Warning: Permanently added '54.144.199.235' (ECDSA) to the list of known hosts. Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 2181605 --chroot epel-8-x86_64 --detached Version: 0.50 Task: {'background': False, 'bootstrap': 'off', 'build_id': 2181605, 'buildroot_pkgs': [], 'chroot': 'epel-8-x86_64', 'enable_net': True, 'fedora_review': False, 'git_hash': '1dce112d4a846055959897bd21e4860c724012f0', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/orrisroot/pymol/apbs.git', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'apbs', 'package_version': '3.0.0-7.1.el8.ors', 'project_dirname': 'pymol', 'project_name': 'pymol', 'project_owner': 'orrisroot', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/orrisroot/pymol/epel-8-x86_64/', 'id': 'copr_base', 'name': 'Copr repository'}, {'baseurl': 'https://download.copr.fedorainfracloud.org/results/orrisroot/el8-devel/epel-8-x86_64/', 'id': 'copr_orrisroot_el8_devel_epel_8_basearch', 'name': 'Additional repo copr_orrisroot_el8_devel_epel_8_basearch'}], 'sandbox': 'orrisroot/pymol--orrisroot', 'source_json': {}, 'source_type': None, 'submitter': 'orrisroot', 'task_id': '2181605-epel-8-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/orrisroot/pymol/apbs.git /var/lib/copr-rpmbuild/workspace/workdir-w2pog_r2/apbs --depth 500 --no-single-branch cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/orrisroot/pymol/apbs.git', '/var/lib/copr-rpmbuild/workspace/workdir-w2pog_r2/apbs', '--depth', '500', '--no-single-branch'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-w2pog_r2/apbs'... Running: git checkout 1dce112d4a846055959897bd21e4860c724012f0 cmd: ['git', 'checkout', '1dce112d4a846055959897bd21e4860c724012f0'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-w2pog_r2/apbs rc: 0 stdout: stderr: Note: switching to '1dce112d4a846055959897bd21e4860c724012f0'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 1dce112 automatic import of apbs Running: copr-distgit-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-w2pog_r2/apbs rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading apbs-pdb2pqr-vAPBS-3.0.0.tar.gz INFO: Calling: curl -H Pragma: -o apbs-pdb2pqr-vAPBS-3.0.0.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/orrisroot/pymol/apbs/apbs-pdb2pqr-vAPBS-3.0.0.tar.gz/md5/264433d7b064189b342b3796915c7dde/apbs-pdb2pqr-vAPBS-3.0.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 101M 100 101M 0 0 35.0M 0 0:00:02 0:00:02 --:--:-- 35.0M INFO: Reading stdout from command: md5sum apbs-pdb2pqr-vAPBS-3.0.0.tar.gz Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-w2pog_r2/apbs/apbs.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-w2pog_r2/apbs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1620741126.795941 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 2.10 starting (python version = 3.9.1, NVR = mock-2.10-1.fc33)... Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-w2pog_r2/apbs/apbs.spec) Config(epel-8-x86_64) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/epel-8-x86_64-1620741126.795941/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 2.10 INFO: Mock Version: 2.10 Start: dnf install No matches found for the following disable plugin patterns: local, spacewalk Invalid configuration value: failovermethod=priority in /var/lib/mock/epel-8-x86_64-1620741126.795941/root/etc/dnf/dnf.conf; Configuration: OptionBinding with id "failovermethod" does not exist Invalid configuration value: failovermethod=priority in /var/lib/mock/epel-8-x86_64-1620741126.795941/root/etc/dnf/dnf.conf; Configuration: OptionBinding with id "failovermethod" does not exist Invalid configuration value: failovermethod=priority in /var/lib/mock/epel-8-x86_64-1620741126.795941/root/etc/dnf/dnf.conf; Configuration: OptionBinding with id "failovermethod" does not exist Invalid configuration value: failovermethod=priority in /var/lib/mock/epel-8-x86_64-1620741126.795941/root/etc/dnf/dnf.conf; Configuration: OptionBinding with id "failovermethod" does not exist Invalid configuration value: failovermethod=priority in /var/lib/mock/epel-8-x86_64-1620741126.795941/root/etc/dnf/dnf.conf; Configuration: OptionBinding with id "failovermethod" does not exist Invalid configuration value: failovermethod=priority in /var/lib/mock/epel-8-x86_64-1620741126.795941/root/etc/dnf/dnf.conf; Configuration: OptionBinding with id "failovermethod" does not exist Invalid configuration value: failovermethod=priority in /var/lib/mock/epel-8-x86_64-1620741126.795941/root/etc/dnf/dnf.conf; Configuration: OptionBinding with id "failovermethod" does not exist Invalid configuration value: failovermethod=priority in /var/lib/mock/epel-8-x86_64-1620741126.795941/root/etc/dnf/dnf.conf; Configuration: OptionBinding with id "failovermethod" does not exist Copr repository 106 kB/s | 20 kB 00:00 Additional repo copr_orrisroot_el8_devel_epel_8 314 kB/s | 70 kB 00:00 CentOS-8 - Base 22 MB/s | 2.3 MB 00:00 CentOS-8 - AppStream 27 MB/s | 6.3 MB 00:00 CentOS-8 - PowerTools 9.7 MB/s | 2.0 MB 00:00 CentOS-8 - Extras 52 kB/s | 9.6 kB 00:00 Extra Packages for Enterprise Linux 8 - x86_64 5.7 MB/s | 9.4 MB 00:01 Dependencies resolved. ======================================================================================================================= Package Arch Version Repository Size ======================================================================================================================= Installing: bash  x86_64 4.4.19-12.el8 baseos 1.5 M bzip2  x86_64 1.0.6-26.el8 baseos 60 k centos-linux-release  noarch 8.3-1.2011.el8 baseos 22 k coreutils  x86_64 8.30-8.el8 baseos 1.2 M cpio  x86_64 2.12-8.el8 baseos 265 k diffutils  x86_64 3.6-6.el8 baseos 358 k epel-release  noarch 8-10.el8 epel 22 k epel-rpm-macros  noarch 8-19 epel 23 k fedpkg-minimal  noarch 1.2.0-1.el8 epel 19 k findutils  x86_64 1:4.6.0-20.el8 baseos 528 k gawk  x86_64 4.2.1-1.el8 baseos 1.1 M gcc  x86_64 8.3.1-5.1.el8 appstream 23 M gcc-c++  x86_64 8.3.1-5.1.el8 appstream 12 M grep  x86_64 3.1-6.el8 baseos 274 k gzip  x86_64 1.9-9.el8 baseos 167 k info  x86_64 6.5-6.el8 baseos 198 k make  x86_64 1:4.2.1-10.el8 baseos 498 k patch  x86_64 2.7.6-11.el8 baseos 138 k redhat-rpm-config  noarch 123-1.el8 appstream 84 k rpm-build  x86_64 4.14.3-4.el8 appstream 172 k sed  x86_64 4.5-2.el8 baseos 298 k shadow-utils  x86_64 2:4.6-11.el8 baseos 1.2 M tar  x86_64 2:1.30-5.el8 baseos 838 k unzip  x86_64 6.0-43.el8 baseos 195 k util-linux  x86_64 2.32.1-24.el8 baseos 2.5 M which  x86_64 2.21-12.el8 baseos 49 k xz  x86_64 5.2.4-3.el8 baseos 153 k Installing dependencies: acl  x86_64 2.2.53-1.el8 baseos 81 k annobin  x86_64 9.23-1.el8 appstream 104 k audit-libs  x86_64 3.0-0.17.20191104git1c2f876.el8 baseos 116 k basesystem  noarch 11-5.el8 baseos 10 k binutils  x86_64 2.30-79.el8 baseos 5.7 M brotli  x86_64 1.0.6-2.el8 baseos 322 k bzip2-libs  x86_64 1.0.6-26.el8 baseos 48 k ca-certificates  noarch 2020.2.41-80.0.el8_2 baseos 391 k centos-gpg-keys  noarch 1:8-2.el8 baseos 12 k centos-linux-repos  noarch 8-2.el8 baseos 20 k chkconfig  x86_64 1.13-2.el8 baseos 194 k coreutils-common  x86_64 8.30-8.el8 baseos 2.0 M cpp  x86_64 8.3.1-5.1.el8 appstream 10 M cracklib  x86_64 2.9.6-15.el8 baseos 93 k crypto-policies  noarch 20210209-1.gitbfb6bed.el8_3 baseos 62 k cryptsetup-libs  x86_64 2.3.3-2.el8 baseos 470 k curl  x86_64 7.61.1-14.el8_3.1 baseos 353 k cyrus-sasl-lib  x86_64 2.1.27-5.el8 baseos 123 k dbus  x86_64 1:1.12.8-12.el8_3 baseos 41 k dbus-common  noarch 1:1.12.8-12.el8_3 baseos 45 k dbus-daemon  x86_64 1:1.12.8-12.el8_3 baseos 240 k dbus-libs  x86_64 1:1.12.8-12.el8_3 baseos 183 k dbus-tools  x86_64 1:1.12.8-12.el8_3 baseos 85 k device-mapper  x86_64 8:1.02.171-5.el8 baseos 373 k device-mapper-libs  x86_64 8:1.02.171-5.el8 baseos 406 k dracut  x86_64 049-95.git20200804.el8_3.4 baseos 368 k dwz  x86_64 0.12-9.el8 appstream 109 k efi-srpm-macros  noarch 3-2.el8 appstream 22 k elfutils  x86_64 0.180-1.el8 baseos 542 k elfutils-default-yama-scope  noarch 0.180-1.el8 baseos 48 k elfutils-libelf  x86_64 0.180-1.el8 baseos 215 k elfutils-libs  x86_64 0.180-1.el8 baseos 293 k expat  x86_64 2.2.5-4.el8 baseos 111 k file  x86_64 5.33-16.el8_3.1 baseos 77 k file-libs  x86_64 5.33-16.el8_3.1 baseos 543 k filesystem  x86_64 3.8-3.el8 baseos 1.1 M fpc-srpm-macros  noarch 1.3-1.el8 epel 8.2 k gc  x86_64 7.6.4-3.el8 appstream 109 k gdb-headless  x86_64 8.2-12.el8 appstream 3.7 M gdbm  x86_64 1:1.18-1.el8 baseos 130 k gdbm-libs  x86_64 1:1.18-1.el8 baseos 60 k gettext  x86_64 0.19.8.1-17.el8 baseos 1.1 M gettext-libs  x86_64 0.19.8.1-17.el8 baseos 314 k ghc-srpm-macros  noarch 1.4.2-7.el8 appstream 9.3 k glib2  x86_64 2.56.4-8.el8 baseos 2.5 M glibc  x86_64 2.28-127.el8 baseos 3.6 M glibc-all-langpacks  x86_64 2.28-127.el8 baseos 25 M glibc-common  x86_64 2.28-127.el8 baseos 1.3 M glibc-devel  x86_64 2.28-127.el8 baseos 1.0 M glibc-headers  x86_64 2.28-127.el8 baseos 475 k gmp  x86_64 1:6.1.2-10.el8 baseos 322 k gnupg2  x86_64 2.2.20-2.el8 baseos 2.4 M gnutls  x86_64 3.6.14-8.el8_3 baseos 1.0 M go-srpm-macros  noarch 2-16.el8 appstream 14 k grub2-common  noarch 1:2.02-90.el8_3.1 baseos 885 k grub2-tools  x86_64 1:2.02-90.el8_3.1 baseos 2.0 M grub2-tools-minimal  x86_64 1:2.02-90.el8_3.1 baseos 206 k guile  x86_64 5:2.0.14-7.el8 appstream 3.5 M ima-evm-utils  x86_64 1.1-5.el8 baseos 56 k iptables-libs  x86_64 1.8.4-15.el8_3.3 baseos 106 k isl  x86_64 0.16.1-6.el8 appstream 841 k json-c  x86_64 0.13.1-0.2.el8 baseos 40 k kbd-legacy  noarch 2.0.4-10.el8 baseos 481 k kbd-misc  noarch 2.0.4-10.el8 baseos 1.5 M kernel-headers  x86_64 4.18.0-240.22.1.el8_3 baseos 5.6 M keyutils-libs  x86_64 1.5.10-6.el8 baseos 34 k kmod  x86_64 25-16.el8 baseos 126 k kmod-libs  x86_64 25-16.el8 baseos 68 k krb5-libs  x86_64 1.18.2-5.el8 baseos 837 k libacl  x86_64 2.2.53-1.el8 baseos 35 k libarchive  x86_64 3.3.3-1.el8 copr_orrisroot_el8_devel_epel_8_basearch 359 k libassuan  x86_64 2.5.1-3.el8 baseos 83 k libatomic_ops  x86_64 7.6.2-3.el8 appstream 38 k libattr  x86_64 2.4.48-3.el8 baseos 27 k libbabeltrace  x86_64 1.5.4-3.el8 baseos 200 k libblkid  x86_64 2.32.1-24.el8 baseos 216 k libcap  x86_64 2.26-4.el8 baseos 60 k libcap-ng  x86_64 0.7.9-5.el8 baseos 33 k libcom_err  x86_64 1.45.6-1.el8 baseos 49 k libcroco  x86_64 0.6.12-4.el8_2.1 baseos 113 k libcurl  x86_64 7.61.1-14.el8_3.1 baseos 299 k libdb  x86_64 5.3.28-39.el8 baseos 750 k libdb-utils  x86_64 5.3.28-39.el8 baseos 149 k libfdisk  x86_64 2.32.1-24.el8 baseos 249 k libffi  x86_64 3.1-22.el8 baseos 37 k libgcc  x86_64 8.3.1-5.1.el8 baseos 78 k libgcrypt  x86_64 1.8.5-4.el8 baseos 463 k libgomp  x86_64 8.3.1-5.1.el8 baseos 204 k libgpg-error  x86_64 1.31-1.el8 baseos 242 k libidn2  x86_64 2.2.0-1.el8 baseos 94 k libipt  x86_64 1.6.1-8.el8 appstream 50 k libkcapi  x86_64 1.2.0-2.el8 baseos 48 k libkcapi-hmaccalc  x86_64 1.2.0-2.el8 baseos 31 k libksba  x86_64 1.3.5-7.el8 baseos 135 k libmetalink  x86_64 0.1.3-7.el8 baseos 32 k libmount  x86_64 2.32.1-24.el8 baseos 232 k libmpc  x86_64 1.0.2-9.el8 appstream 59 k libnghttp2  x86_64 1.33.0-3.el8_2.1 baseos 77 k libnsl2  x86_64 1.2.0-2.20180605git4a062cf.el8 baseos 58 k libpcap  x86_64 14:1.9.1-4.el8 baseos 166 k libpkgconf  x86_64 1.4.2-1.el8 baseos 35 k libpsl  x86_64 0.20.2-6.el8 baseos 61 k libpwquality  x86_64 1.4.0-9.el8 baseos 103 k libseccomp  x86_64 2.4.3-1.el8 baseos 67 k libsecret  x86_64 0.18.6-1.el8 baseos 163 k libselinux  x86_64 2.9-4.el8_3 baseos 165 k libsemanage  x86_64 2.9-3.el8 baseos 165 k libsepol  x86_64 2.9-1.el8 baseos 340 k libsigsegv  x86_64 2.11-5.el8 baseos 30 k libsmartcols  x86_64 2.32.1-24.el8 baseos 175 k libssh  x86_64 0.9.4-2.el8 baseos 215 k libssh-config  noarch 0.9.4-2.el8 baseos 18 k libstdc++  x86_64 8.3.1-5.1.el8 baseos 451 k libstdc++-devel  x86_64 8.3.1-5.1.el8 appstream 2.0 M libtasn1  x86_64 4.13-3.el8 baseos 76 k libtirpc  x86_64 1.1.4-4.el8 baseos 113 k libtool-ltdl  x86_64 2.4.6-25.el8 baseos 58 k libunistring  x86_64 0.9.9-3.el8 baseos 422 k libusbx  x86_64 1.0.23-4.el8 baseos 74 k libutempter  x86_64 1.1.6-14.el8 baseos 32 k libuuid  x86_64 2.32.1-24.el8 baseos 95 k libverto  x86_64 0.3.0-5.el8 baseos 24 k libxcrypt  x86_64 4.1.1-4.el8 baseos 73 k libxcrypt-devel  x86_64 4.1.1-4.el8 baseos 25 k libxml2  x86_64 2.9.7-8.el8 baseos 696 k libzstd  x86_64 1.4.4-1.el8 baseos 266 k lua-libs  x86_64 5.3.4-11.el8 baseos 118 k lua-srpm-macros  noarch 1-3.el8 epel 8.1 k lz4-libs  x86_64 1.8.3-2.el8 baseos 66 k mpfr  x86_64 3.1.6-1.el8 baseos 221 k ncurses  x86_64 6.1-7.20180224.el8 baseos 387 k ncurses-base  noarch 6.1-7.20180224.el8 baseos 81 k ncurses-libs  x86_64 6.1-7.20180224.el8 baseos 335 k nettle  x86_64 3.4.1-4.el8_3 baseos 301 k npth  x86_64 1.5-4.el8 baseos 26 k ocaml-srpm-macros  noarch 5-4.el8 appstream 9.4 k openblas-srpm-macros  noarch 2-2.el8 appstream 7.9 k openldap  x86_64 2.4.46-15.el8 baseos 351 k openssl  x86_64 1:1.1.1g-15.el8_3 baseos 707 k openssl-libs  x86_64 1:1.1.1g-15.el8_3 baseos 1.5 M os-prober  x86_64 1.74-6.el8 baseos 51 k p11-kit  x86_64 0.23.14-5.el8_0 baseos 272 k p11-kit-trust  x86_64 0.23.14-5.el8_0 baseos 139 k pam  x86_64 1.3.1-11.el8 baseos 738 k pcre  x86_64 8.42-4.el8 baseos 208 k pcre2  x86_64 10.32-2.el8 baseos 246 k perl-srpm-macros  noarch 1-25.el8 appstream 11 k pkgconf  x86_64 1.4.2-1.el8 baseos 38 k pkgconf-m4  noarch 1.4.2-1.el8 baseos 17 k pkgconf-pkg-config  x86_64 1.4.2-1.el8 baseos 15 k platform-python  x86_64 3.6.8-31.el8 baseos 83 k platform-python-setuptools  noarch 39.2.0-6.el8 baseos 632 k popt  x86_64 1.16-14.el8 baseos 61 k procps-ng  x86_64 3.3.15-3.el8_3.1 baseos 328 k publicsuffix-list-dafsa  noarch 20180723-1.el8 baseos 56 k python-rpm-macros  noarch 3-39.el8 appstream 14 k python-srpm-macros  noarch 3-39.el8 appstream 14 k python2-rpm-macros  noarch 3-38.module_el8.3.0+478+7570e00c appstream 13 k python3-libs  x86_64 3.6.8-31.el8 baseos 7.8 M python3-pip-wheel  noarch 9.0.3-18.el8 baseos 1.0 M python3-rpm-macros  noarch 3-39.el8 appstream 13 k python3-setuptools-wheel  noarch 39.2.0-6.el8 baseos 289 k qt5-srpm-macros  noarch 5.12.5-3.el8 appstream 10 k readline  x86_64 7.0-10.el8 baseos 199 k rpm  x86_64 4.14.3-4.el8 baseos 541 k rpm-build-libs  x86_64 4.14.3-4.el8 baseos 154 k rpm-libs  x86_64 4.14.3-4.el8 baseos 338 k rust-srpm-macros  noarch 5-2.el8 appstream 9.2 k setup  noarch 2.12.2-6.el8 baseos 181 k sqlite-libs  x86_64 3.26.0-11.el8 baseos 580 k systemd-libs  x86_64 239-41.el8_3.2 baseos 1.1 M systemd-pam  x86_64 239-41.el8_3.2 baseos 456 k systemd-udev  x86_64 239-41.el8_3.2 baseos 1.3 M trousers-lib  x86_64 0.3.14-4.el8 baseos 169 k tzdata  noarch 2021a-1.el8 baseos 473 k xkeyboard-config  noarch 2.28-1.el8 appstream 782 k xz-libs  x86_64 5.2.4-3.el8 baseos 94 k zip  x86_64 3.0-23.el8 baseos 270 k zlib  x86_64 1.2.11-16.2.el8_3 baseos 102 k zstd  x86_64 1.4.4-1.el8 appstream 393 k Installing weak dependencies: cracklib-dicts  x86_64 2.9.6-15.el8 baseos 4.0 M crypto-policies-scripts  noarch 20210209-1.gitbfb6bed.el8_3 baseos 67 k elfutils-debuginfod-client  x86_64 0.180-1.el8 baseos 64 k gnupg2-smime  x86_64 2.2.20-2.el8 baseos 283 k grubby  x86_64 8.40-41.el8 baseos 49 k hardlink  x86_64 1:1.3-6.el8 baseos 29 k kbd  x86_64 2.0.4-10.el8 baseos 390 k kpartx  x86_64 0.8.4-5.el8 baseos 108 k libxkbcommon  x86_64 0.9.1-1.el8 appstream 116 k memstrack  x86_64 0.1.11-1.el8 baseos 48 k openssl-pkcs11  x86_64 0.4.10-2.el8 baseos 66 k pigz  x86_64 2.4-4.el8 baseos 79 k pinentry  x86_64 1.1.0-2.el8 appstream 100 k platform-python-pip  noarch 9.0.3-18.el8 baseos 1.7 M shared-mime-info  x86_64 1.9-3.el8 baseos 329 k systemd  x86_64 239-41.el8_3.2 baseos 3.5 M trousers  x86_64 0.3.14-4.el8 baseos 153 k Enabling module streams: python27 2.7 Transaction Summary ======================================================================================================================= Install 224 Packages Total download size: 177 M Installed size: 886 M Downloading Packages: (1/224): acl-2.2.53-1.el8.x86_64.rpm 4.4 MB/s | 81 kB 00:00 (2/224): basesystem-11-5.el8.noarch.rpm 3.4 MB/s | 10 kB 00:00 (3/224): libarchive-3.3.3-1.el8.x86_64.rpm 14 MB/s | 359 kB 00:00 (4/224): audit-libs-3.0-0.17.20191104git1c2f876 4.3 MB/s | 116 kB 00:00 (5/224): brotli-1.0.6-2.el8.x86_64.rpm 37 MB/s | 322 kB 00:00 (6/224): bzip2-1.0.6-26.el8.x86_64.rpm 5.9 MB/s | 60 kB 00:00 (7/224): bzip2-libs-1.0.6-26.el8.x86_64.rpm 5.3 MB/s | 48 kB 00:00 (8/224): ca-certificates-2020.2.41-80.0.el8_2.n 28 MB/s | 391 kB 00:00 (9/224): centos-gpg-keys-8-2.el8.noarch.rpm 3.6 MB/s | 12 kB 00:00 (10/224): centos-linux-release-8.3-1.2011.el8.n 7.6 MB/s | 22 kB 00:00 (11/224): centos-linux-repos-8-2.el8.noarch.rpm 11 MB/s | 20 kB 00:00 (12/224): chkconfig-1.13-2.el8.x86_64.rpm 37 MB/s | 194 kB 00:00 (13/224): binutils-2.30-79.el8.x86_64.rpm 53 MB/s | 5.7 MB 00:00 (14/224): bash-4.4.19-12.el8.x86_64.rpm 9.3 MB/s | 1.5 MB 00:00 (15/224): cpio-2.12-8.el8.x86_64.rpm 56 MB/s | 265 kB 00:00 (16/224): cracklib-2.9.6-15.el8.x86_64.rpm 7.9 MB/s | 93 kB 00:00 (17/224): coreutils-8.30-8.el8.x86_64.rpm 5.8 MB/s | 1.2 MB 00:00 (18/224): crypto-policies-20210209-1.gitbfb6bed 24 MB/s | 62 kB 00:00 (19/224): coreutils-common-8.30-8.el8.x86_64.rp 11 MB/s | 2.0 MB 00:00 (20/224): crypto-policies-scripts-20210209-1.gi 6.1 MB/s | 67 kB 00:00 (21/224): curl-7.61.1-14.el8_3.1.x86_64.rpm 63 MB/s | 353 kB 00:00 (22/224): cryptsetup-libs-2.3.3-2.el8.x86_64.rp 36 MB/s | 470 kB 00:00 (23/224): cyrus-sasl-lib-2.1.27-5.el8.x86_64.rp 16 MB/s | 123 kB 00:00 (24/224): dbus-common-1.12.8-12.el8_3.noarch.rp 7.8 MB/s | 45 kB 00:00 (25/224): dbus-1.12.8-12.el8_3.x86_64.rpm 4.1 MB/s | 41 kB 00:00 (26/224): dbus-libs-1.12.8-12.el8_3.x86_64.rpm 13 MB/s | 183 kB 00:00 (27/224): cracklib-dicts-2.9.6-15.el8.x86_64.rp 25 MB/s | 4.0 MB 00:00 (28/224): dbus-tools-1.12.8-12.el8_3.x86_64.rpm 4.8 MB/s | 85 kB 00:00 (29/224): dbus-daemon-1.12.8-12.el8_3.x86_64.rp 6.5 MB/s | 240 kB 00:00 (30/224): diffutils-3.6-6.el8.x86_64.rpm 28 MB/s | 358 kB 00:00 (31/224): device-mapper-libs-1.02.171-5.el8.x86 23 MB/s | 406 kB 00:00 (32/224): dracut-049-95.git20200804.el8_3.4.x86 31 MB/s | 368 kB 00:00 (33/224): elfutils-debuginfod-client-0.180-1.el 15 MB/s | 64 kB 00:00 (34/224): elfutils-default-yama-scope-0.180-1.e 11 MB/s | 48 kB 00:00 (35/224): device-mapper-1.02.171-5.el8.x86_64.r 8.7 MB/s | 373 kB 00:00 (36/224): elfutils-0.180-1.el8.x86_64.rpm 16 MB/s | 542 kB 00:00 (37/224): elfutils-libelf-0.180-1.el8.x86_64.rp 13 MB/s | 215 kB 00:00 (38/224): expat-2.2.5-4.el8.x86_64.rpm 23 MB/s | 111 kB 00:00 (39/224): file-5.33-16.el8_3.1.x86_64.rpm 15 MB/s | 77 kB 00:00 (40/224): elfutils-libs-0.180-1.el8.x86_64.rpm 13 MB/s | 293 kB 00:00 (41/224): filesystem-3.8-3.el8.x86_64.rpm 49 MB/s | 1.1 MB 00:00 (42/224): file-libs-5.33-16.el8_3.1.x86_64.rpm 19 MB/s | 543 kB 00:00 (43/224): findutils-4.6.0-20.el8.x86_64.rpm 20 MB/s | 528 kB 00:00 (44/224): gdbm-libs-1.18-1.el8.x86_64.rpm 14 MB/s | 60 kB 00:00 (45/224): gdbm-1.18-1.el8.x86_64.rpm 5.4 MB/s | 130 kB 00:00 (46/224): gawk-4.2.1-1.el8.x86_64.rpm 34 MB/s | 1.1 MB 00:00 (47/224): gettext-0.19.8.1-17.el8.x86_64.rpm 41 MB/s | 1.1 MB 00:00 (48/224): gettext-libs-0.19.8.1-17.el8.x86_64.r 22 MB/s | 314 kB 00:00 (49/224): glibc-2.28-127.el8.x86_64.rpm 52 MB/s | 3.6 MB 00:00 (50/224): glibc-common-2.28-127.el8.x86_64.rpm 64 MB/s | 1.3 MB 00:00 (51/224): glibc-devel-2.28-127.el8.x86_64.rpm 41 MB/s | 1.0 MB 00:00 (52/224): glibc-headers-2.28-127.el8.x86_64.rpm 45 MB/s | 475 kB 00:00 (53/224): gmp-6.1.2-10.el8.x86_64.rpm 33 MB/s | 322 kB 00:00 (54/224): glib2-2.56.4-8.el8.x86_64.rpm 10 MB/s | 2.5 MB 00:00 (55/224): gnupg2-smime-2.2.20-2.el8.x86_64.rpm 40 MB/s | 283 kB 00:00 (56/224): gnutls-3.6.14-8.el8_3.x86_64.rpm 65 MB/s | 1.0 MB 00:00 (57/224): grep-3.1-6.el8.x86_64.rpm 34 MB/s | 274 kB 00:00 (58/224): glibc-all-langpacks-2.28-127.el8.x86_ 63 MB/s | 25 MB 00:00 (59/224): grub2-common-2.02-90.el8_3.1.noarch.r 6.3 MB/s | 885 kB 00:00 (60/224): gnupg2-2.2.20-2.el8.x86_64.rpm 8.4 MB/s | 2.4 MB 00:00 (61/224): grub2-tools-minimal-2.02-90.el8_3.1.x 14 MB/s | 206 kB 00:00 (62/224): grubby-8.40-41.el8.x86_64.rpm 7.7 MB/s | 49 kB 00:00 (63/224): hardlink-1.3-6.el8.x86_64.rpm 11 MB/s | 29 kB 00:00 (64/224): gzip-1.9-9.el8.x86_64.rpm 20 MB/s | 167 kB 00:00 (65/224): ima-evm-utils-1.1-5.el8.x86_64.rpm 15 MB/s | 56 kB 00:00 (66/224): grub2-tools-2.02-90.el8_3.1.x86_64.rp 44 MB/s | 2.0 MB 00:00 (67/224): iptables-libs-1.8.4-15.el8_3.3.x86_64 8.8 MB/s | 106 kB 00:00 (68/224): info-6.5-6.el8.x86_64.rpm 12 MB/s | 198 kB 00:00 (69/224): kbd-2.0.4-10.el8.x86_64.rpm 33 MB/s | 390 kB 00:00 (70/224): kbd-misc-2.0.4-10.el8.noarch.rpm 76 MB/s | 1.5 MB 00:00 (71/224): json-c-0.13.1-0.2.el8.x86_64.rpm 1.1 MB/s | 40 kB 00:00 (72/224): kbd-legacy-2.0.4-10.el8.noarch.rpm 13 MB/s | 481 kB 00:00 (73/224): keyutils-libs-1.5.10-6.el8.x86_64.rpm 5.9 MB/s | 34 kB 00:00 (74/224): kmod-libs-25-16.el8.x86_64.rpm 6.5 MB/s | 68 kB 00:00 (75/224): kmod-25-16.el8.x86_64.rpm 8.0 MB/s | 126 kB 00:00 (76/224): kpartx-0.8.4-5.el8.x86_64.rpm 10 MB/s | 108 kB 00:00 (77/224): libacl-2.2.53-1.el8.x86_64.rpm 2.8 MB/s | 35 kB 00:00 (78/224): libassuan-2.5.1-3.el8.x86_64.rpm 5.1 MB/s | 83 kB 00:00 (79/224): kernel-headers-4.18.0-240.22.1.el8_3. 69 MB/s | 5.6 MB 00:00 (80/224): libattr-2.4.48-3.el8.x86_64.rpm 1.1 MB/s | 27 kB 00:00 (81/224): libblkid-2.32.1-24.el8.x86_64.rpm 23 MB/s | 216 kB 00:00 (82/224): libbabeltrace-1.5.4-3.el8.x86_64.rpm 15 MB/s | 200 kB 00:00 (83/224): libcap-2.26-4.el8.x86_64.rpm 16 MB/s | 60 kB 00:00 (84/224): libcap-ng-0.7.9-5.el8.x86_64.rpm 8.7 MB/s | 33 kB 00:00 (85/224): krb5-libs-1.18.2-5.el8.x86_64.rpm 10 MB/s | 837 kB 00:00 (86/224): libcom_err-1.45.6-1.el8.x86_64.rpm 6.7 MB/s | 49 kB 00:00 (87/224): libcroco-0.6.12-4.el8_2.1.x86_64.rpm 12 MB/s | 113 kB 00:00 (88/224): libcurl-7.61.1-14.el8_3.1.x86_64.rpm 13 MB/s | 299 kB 00:00 (89/224): libdb-utils-5.3.28-39.el8.x86_64.rpm 7.5 MB/s | 149 kB 00:00 (90/224): libfdisk-2.32.1-24.el8.x86_64.rpm 27 MB/s | 249 kB 00:00 (91/224): libffi-3.1-22.el8.x86_64.rpm 4.3 MB/s | 37 kB 00:00 (92/224): libgcc-8.3.1-5.1.el8.x86_64.rpm 6.5 MB/s | 78 kB 00:00 (93/224): libgcrypt-1.8.5-4.el8.x86_64.rpm 32 MB/s | 463 kB 00:00 (94/224): libgomp-8.3.1-5.1.el8.x86_64.rpm 25 MB/s | 204 kB 00:00 (95/224): libdb-5.3.28-39.el8.x86_64.rpm 13 MB/s | 750 kB 00:00 (96/224): libgpg-error-1.31-1.el8.x86_64.rpm 19 MB/s | 242 kB 00:00 (97/224): libkcapi-1.2.0-2.el8.x86_64.rpm 9.6 MB/s | 48 kB 00:00 (98/224): libidn2-2.2.0-1.el8.x86_64.rpm 9.2 MB/s | 94 kB 00:00 (99/224): libmetalink-0.1.3-7.el8.x86_64.rpm 9.1 MB/s | 32 kB 00:00 (100/224): libkcapi-hmaccalc-1.2.0-2.el8.x86_64 4.2 MB/s | 31 kB 00:00 (101/224): libksba-1.3.5-7.el8.x86_64.rpm 18 MB/s | 135 kB 00:00 (102/224): libmount-2.32.1-24.el8.x86_64.rpm 35 MB/s | 232 kB 00:00 (103/224): libnghttp2-1.33.0-3.el8_2.1.x86_64.r 12 MB/s | 77 kB 00:00 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memstrack-0.1.11-1.el8.x86_64.rpm 10 MB/s | 48 kB 00:00 (134/224): mpfr-3.1.6-1.el8.x86_64.rpm 31 MB/s | 221 kB 00:00 (135/224): make-4.2.1-10.el8.x86_64.rpm 27 MB/s | 498 kB 00:00 (136/224): ncurses-base-6.1-7.20180224.el8.noar 10 MB/s | 81 kB 00:00 (137/224): ncurses-6.1-7.20180224.el8.x86_64.rp 23 MB/s | 387 kB 00:00 (138/224): ncurses-libs-6.1-7.20180224.el8.x86_ 33 MB/s | 335 kB 00:00 (139/224): npth-1.5-4.el8.x86_64.rpm 4.3 MB/s | 26 kB 00:00 (140/224): nettle-3.4.1-4.el8_3.x86_64.rpm 21 MB/s | 301 kB 00:00 (141/224): openldap-2.4.46-15.el8.x86_64.rpm 32 MB/s | 351 kB 00:00 (142/224): openssl-pkcs11-0.4.10-2.el8.x86_64.r 13 MB/s | 66 kB 00:00 (143/224): os-prober-1.74-6.el8.x86_64.rpm 10 MB/s | 51 kB 00:00 (144/224): openssl-libs-1.1.1g-15.el8_3.x86_64. 64 MB/s | 1.5 MB 00:00 (145/224): p11-kit-0.23.14-5.el8_0.x86_64.rpm 26 MB/s | 272 kB 00:00 (146/224): openssl-1.1.1g-15.el8_3.x86_64.rpm 21 MB/s | 707 kB 00:00 (147/224): p11-kit-trust-0.23.14-5.el8_0.x86_64 11 MB/s | 139 kB 00:00 (148/224): pam-1.3.1-11.el8.x86_64.rpm 50 MB/s | 738 kB 00:00 (149/224): patch-2.7.6-11.el8.x86_64.rpm 9.2 MB/s | 138 kB 00:00 (150/224): pigz-2.4-4.el8.x86_64.rpm 15 MB/s | 79 kB 00:00 (151/224): pkgconf-1.4.2-1.el8.x86_64.rpm 9.2 MB/s | 38 kB 00:00 (152/224): pkgconf-m4-1.4.2-1.el8.noarch.rpm 4.6 MB/s | 17 kB 00:00 (153/224): pcre-8.42-4.el8.x86_64.rpm 7.8 MB/s | 208 kB 00:00 (154/224): pkgconf-pkg-config-1.4.2-1.el8.x86_6 4.8 MB/s | 15 kB 00:00 (155/224): pcre2-10.32-2.el8.x86_64.rpm 9.6 MB/s | 246 kB 00:00 (156/224): platform-python-3.6.8-31.el8.x86_64. 16 MB/s | 83 kB 00:00 (157/224): popt-1.16-14.el8.x86_64.rpm 8.0 MB/s | 61 kB 00:00 (158/224): platform-python-setuptools-39.2.0-6. 31 MB/s | 632 kB 00:00 (159/224): procps-ng-3.3.15-3.el8_3.1.x86_64.rp 27 MB/s | 328 kB 00:00 (160/224): publicsuffix-list-dafsa-20180723-1.e 18 MB/s | 56 kB 00:00 (161/224): platform-python-pip-9.0.3-18.el8.noa 48 MB/s | 1.7 MB 00:00 (162/224): python3-setuptools-wheel-39.2.0-6.el 19 MB/s | 289 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systemd-udev-239-41.el8_3.2.x86_64.r 35 MB/s | 1.3 MB 00:00 (178/224): trousers-0.3.14-4.el8.x86_64.rpm 12 MB/s | 153 kB 00:00 (179/224): tar-1.30-5.el8.x86_64.rpm 34 MB/s | 838 kB 00:00 (180/224): tzdata-2021a-1.el8.noarch.rpm 43 MB/s | 473 kB 00:00 (181/224): unzip-6.0-43.el8.x86_64.rpm 20 MB/s | 195 kB 00:00 (182/224): trousers-lib-0.3.14-4.el8.x86_64.rpm 7.0 MB/s | 169 kB 00:00 (183/224): which-2.21-12.el8.x86_64.rpm 4.8 MB/s | 49 kB 00:00 (184/224): xz-5.2.4-3.el8.x86_64.rpm 14 MB/s | 153 kB 00:00 (185/224): util-linux-2.32.1-24.el8.x86_64.rpm 69 MB/s | 2.5 MB 00:00 (186/224): xz-libs-5.2.4-3.el8.x86_64.rpm 3.8 MB/s | 94 kB 00:00 (187/224): zip-3.0-23.el8.x86_64.rpm 16 MB/s | 270 kB 00:00 (188/224): zlib-1.2.11-16.2.el8_3.x86_64.rpm 21 MB/s | 102 kB 00:00 (189/224): dwz-0.12-9.el8.x86_64.rpm 14 MB/s | 109 kB 00:00 (190/224): efi-srpm-macros-3-2.el8.noarch.rpm 5.2 MB/s | 22 kB 00:00 (191/224): gc-7.6.4-3.el8.x86_64.rpm 16 MB/s | 109 kB 00:00 (192/224): annobin-9.23-1.el8.x86_64.rpm 3.0 MB/s | 104 kB 00:00 (193/224): cpp-8.3.1-5.1.el8.x86_64.rpm 65 MB/s | 10 MB 00:00 (194/224): gdb-headless-8.2-12.el8.x86_64.rpm 50 MB/s | 3.7 MB 00:00 (195/224): ghc-srpm-macros-1.4.2-7.el8.noarch.r 988 kB/s | 9.3 kB 00:00 (196/224): go-srpm-macros-2-16.el8.noarch.rpm 3.8 MB/s | 14 kB 00:00 (197/224): gcc-c++-8.3.1-5.1.el8.x86_64.rpm 41 MB/s | 12 MB 00:00 (198/224): guile-2.0.14-7.el8.x86_64.rpm 34 MB/s | 3.5 MB 00:00 (199/224): libatomic_ops-7.6.2-3.el8.x86_64.rpm 11 MB/s | 38 kB 00:00 (200/224): isl-0.16.1-6.el8.x86_64.rpm 27 MB/s | 841 kB 00:00 (201/224): libipt-1.6.1-8.el8.x86_64.rpm 7.1 MB/s | 50 kB 00:00 (202/224): libstdc++-devel-8.3.1-5.1.el8.x86_64 81 MB/s | 2.0 MB 00:00 (203/224): libmpc-1.0.2-9.el8.x86_64.rpm 2.0 MB/s | 59 kB 00:00 (204/224): gcc-8.3.1-5.1.el8.x86_64.rpm 51 MB/s | 23 MB 00:00 (205/224): ocaml-srpm-macros-5-4.el8.noarch.rpm 107 kB/s | 9.4 kB 00:00 (206/224): libxkbcommon-0.9.1-1.el8.x86_64.rpm 1.2 MB/s | 116 kB 00:00 (207/224): perl-srpm-macros-1-25.el8.noarch.rpm 2.1 MB/s | 11 kB 00:00 (208/224): pinentry-1.1.0-2.el8.x86_64.rpm 20 MB/s | 100 kB 00:00 (209/224): python-rpm-macros-3-39.el8.noarch.rp 3.0 MB/s | 14 kB 00:00 (210/224): python-srpm-macros-3-39.el8.noarch.r 2.7 MB/s | 14 kB 00:00 (211/224): openblas-srpm-macros-2-2.el8.noarch. 546 kB/s | 7.9 kB 00:00 (212/224): python3-rpm-macros-3-39.el8.noarch.r 2.7 MB/s | 13 kB 00:00 (213/224): redhat-rpm-config-123-1.el8.noarch.r 8.0 MB/s | 84 kB 00:00 (214/224): rpm-build-4.14.3-4.el8.x86_64.rpm 39 MB/s | 172 kB 00:00 (215/224): rust-srpm-macros-5-2.el8.noarch.rpm 848 kB/s | 9.2 kB 00:00 (216/224): python2-rpm-macros-3-38.module_el8.3 370 kB/s | 13 kB 00:00 (217/224): qt5-srpm-macros-5.12.5-3.el8.noarch. 236 kB/s | 10 kB 00:00 (218/224): zstd-1.4.4-1.el8.x86_64.rpm 22 MB/s | 393 kB 00:00 (219/224): xkeyboard-config-2.28-1.el8.noarch.r 18 MB/s | 782 kB 00:00 (220/224): epel-rpm-macros-8-19.noarch.rpm 969 kB/s | 23 kB 00:00 (221/224): fedpkg-minimal-1.2.0-1.el8.noarch.rp 7.4 MB/s | 19 kB 00:00 (222/224): fpc-srpm-macros-1.3-1.el8.noarch.rpm 2.1 MB/s | 8.2 kB 00:00 (223/224): epel-release-8-10.el8.noarch.rpm 534 kB/s | 22 kB 00:00 (224/224): lua-srpm-macros-1-3.el8.noarch.rpm 669 kB/s | 8.1 kB 00:00 -------------------------------------------------------------------------------- Total 68 MB/s | 177 MB 00:02 warning: /var/lib/mock/epel-8-x86_64-1620741126.795941/root/var/cache/dnf/baseos-586be817612a3cb1/packages/acl-2.2.53-1.el8.x86_64.rpm: Header V3 RSA/SHA256 Signature, key ID 8483c65d: NOKEY CentOS-8 - Base 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x8483C65D: Userid : "CentOS (CentOS Official Signing Key) " Fingerprint: 99DB 70FA E1D7 CE22 7FB6 4882 05B5 55B3 8483 C65D From : /usr/share/distribution-gpg-keys/centos/RPM-GPG-KEY-CentOS-Official Key imported successfully warning: /var/lib/mock/epel-8-x86_64-1620741126.795941/root/var/cache/dnf/epel-59dc218ad097ee72/packages/epel-release-8-10.el8.noarch.rpm: Header V4 RSA/SHA256 Signature, key ID 2f86d6a1: NOKEY Extra Packages for Enterprise Linux 8 - x86_64 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x2F86D6A1: Userid : "Fedora EPEL (8) " Fingerprint: 94E2 79EB 8D8F 25B2 1810 ADF1 21EA 45AB 2F86 D6A1 From : /usr/share/distribution-gpg-keys/epel/RPM-GPG-KEY-EPEL-8 Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.8-3.el8.x86_64 1/1 Preparing : 1/1 Installing : libgcc-8.3.1-5.1.el8.x86_64 1/224 Running scriptlet: libgcc-8.3.1-5.1.el8.x86_64 1/224 Installing : python-srpm-macros-3-39.el8.noarch 2/224 Installing : python3-setuptools-wheel-39.2.0-6.el8.noarch 3/224 Installing : python3-pip-wheel-9.0.3-18.el8.noarch 4/224 Installing : python-rpm-macros-3-39.el8.noarch 5/224 Installing : fpc-srpm-macros-1.3-1.el8.noarch 6/224 Installing : xkeyboard-config-2.28-1.el8.noarch 7/224 Installing : rust-srpm-macros-5-2.el8.noarch 8/224 Installing : qt5-srpm-macros-5.12.5-3.el8.noarch 9/224 Installing : python3-rpm-macros-3-39.el8.noarch 10/224 Installing : python2-rpm-macros-3-38.module_el8.3.0+478+7570e 11/224 Installing : perl-srpm-macros-1-25.el8.noarch 12/224 Installing : openblas-srpm-macros-2-2.el8.noarch 13/224 Installing : ocaml-srpm-macros-5-4.el8.noarch 14/224 Installing : go-srpm-macros-2-16.el8.noarch 15/224 Installing : 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cracklib-dicts-2.9.6-15.el8.x86_64 153/224 Installing : procps-ng-3.3.15-3.el8_3.1.x86_64 154/224 Installing : krb5-libs-1.18.2-5.el8.x86_64 155/224 Installing : libtirpc-1.1.4-4.el8.x86_64 156/224 Running scriptlet: libtirpc-1.1.4-4.el8.x86_64 156/224 Installing : libnsl2-1.2.0-2.20180605git4a062cf.el8.x86_64 157/224 Running scriptlet: libnsl2-1.2.0-2.20180605git4a062cf.el8.x86_64 157/224 Installing : openssl-pkcs11-0.4.10-2.el8.x86_64 158/224 Installing : gettext-libs-0.19.8.1-17.el8.x86_64 159/224 Installing : libcroco-0.6.12-4.el8_2.1.x86_64 160/224 Running scriptlet: libcroco-0.6.12-4.el8_2.1.x86_64 160/224 Installing : kpartx-0.8.4-5.el8.x86_64 161/224 Installing : device-mapper-8:1.02.171-5.el8.x86_64 162/224 Installing : elfutils-debuginfod-client-0.180-1.el8.x86_64 163/224 Installing : elfutils-default-yama-scope-0.180-1.el8.noarch 164/224 Running scriptlet: elfutils-default-yama-scope-0.180-1.el8.noarch 164/224 Installing : elfutils-libs-0.180-1.el8.x86_64 165/224 Installing : rpm-4.14.3-4.el8.x86_64 166/224 Installing : libfdisk-2.32.1-24.el8.x86_64 167/224 Running scriptlet: libfdisk-2.32.1-24.el8.x86_64 167/224 Installing : libmount-2.32.1-24.el8.x86_64 168/224 Running scriptlet: libmount-2.32.1-24.el8.x86_64 168/224 Installing : dbus-libs-1:1.12.8-12.el8_3.x86_64 169/224 Running scriptlet: dbus-libs-1:1.12.8-12.el8_3.x86_64 169/224 Installing : dbus-tools-1:1.12.8-12.el8_3.x86_64 170/224 Installing : coreutils-8.30-8.el8.x86_64 171/224 Installing : systemd-libs-239-41.el8_3.2.x86_64 172/224 Running scriptlet: systemd-libs-239-41.el8_3.2.x86_64 172/224 Installing : libblkid-2.32.1-24.el8.x86_64 173/224 Running scriptlet: libblkid-2.32.1-24.el8.x86_64 173/224 Installing : device-mapper-libs-8:1.02.171-5.el8.x86_64 174/224 Installing : shadow-utils-2:4.6-11.el8.x86_64 175/224 Running scriptlet: ca-certificates-2020.2.41-80.0.el8_2.noarch 176/224 Installing : ca-certificates-2020.2.41-80.0.el8_2.noarch 176/224 Running scriptlet: ca-certificates-2020.2.41-80.0.el8_2.noarch 176/224 Installing : openssl-libs-1:1.1.1g-15.el8_3.x86_64 177/224 Running scriptlet: openssl-libs-1:1.1.1g-15.el8_3.x86_64 177/224 Installing : libdb-5.3.28-39.el8.x86_64 178/224 Running scriptlet: libdb-5.3.28-39.el8.x86_64 178/224 Installing : rpm-libs-4.14.3-4.el8.x86_64 179/224 Running scriptlet: rpm-libs-4.14.3-4.el8.x86_64 179/224 Installing : kmod-25-16.el8.x86_64 180/224 Installing : kmod-libs-25-16.el8.x86_64 181/224 Running scriptlet: kmod-libs-25-16.el8.x86_64 181/224 Installing : cryptsetup-libs-2.3.3-2.el8.x86_64 182/224 Running scriptlet: cryptsetup-libs-2.3.3-2.el8.x86_64 182/224 Installing : trousers-lib-0.3.14-4.el8.x86_64 183/224 Running scriptlet: trousers-lib-0.3.14-4.el8.x86_64 183/224 Running scriptlet: dbus-daemon-1:1.12.8-12.el8_3.x86_64 184/224 Installing : dbus-daemon-1:1.12.8-12.el8_3.x86_64 184/224 Running scriptlet: dbus-daemon-1:1.12.8-12.el8_3.x86_64 184/224 Running scriptlet: libutempter-1.1.6-14.el8.x86_64 185/224 Installing : libutempter-1.1.6-14.el8.x86_64 185/224 Installing : kbd-2.0.4-10.el8.x86_64 186/224 Installing : libpwquality-1.4.0-9.el8.x86_64 187/224 Installing : pam-1.3.1-11.el8.x86_64 188/224 Running scriptlet: pam-1.3.1-11.el8.x86_64 188/224 Installing : util-linux-2.32.1-24.el8.x86_64 189/224 Running scriptlet: util-linux-2.32.1-24.el8.x86_64 189/224 Installing : gettext-0.19.8.1-17.el8.x86_64 190/224 Running scriptlet: gettext-0.19.8.1-17.el8.x86_64 190/224 Installing : glib2-2.56.4-8.el8.x86_64 191/224 Installing : shared-mime-info-1.9-3.el8.x86_64 192/224 Running scriptlet: shared-mime-info-1.9-3.el8.x86_64 192/224 Installing : systemd-pam-239-41.el8_3.2.x86_64 193/224 Installing : dracut-049-95.git20200804.el8_3.4.x86_64 194/224 Installing : os-prober-1.74-6.el8.x86_64 195/224 Running scriptlet: grub2-tools-1:2.02-90.el8_3.1.x86_64 196/224 Installing : grub2-tools-1:2.02-90.el8_3.1.x86_64 196/224 Running scriptlet: grub2-tools-1:2.02-90.el8_3.1.x86_64 196/224 Installing : gnutls-3.6.14-8.el8_3.x86_64 197/224 Installing : dbus-1:1.12.8-12.el8_3.x86_64 198/224 Running scriptlet: systemd-239-41.el8_3.2.x86_64 199/224 Installing : systemd-239-41.el8_3.2.x86_64 199/224 Running scriptlet: systemd-239-41.el8_3.2.x86_64 199/224 Installing : systemd-udev-239-41.el8_3.2.x86_64 200/224 Running scriptlet: systemd-udev-239-41.el8_3.2.x86_64 200/224 Running scriptlet: trousers-0.3.14-4.el8.x86_64 201/224 Installing : trousers-0.3.14-4.el8.x86_64 201/224 Running scriptlet: trousers-0.3.14-4.el8.x86_64 201/224 Installing : binutils-2.30-79.el8.x86_64 202/224 Running scriptlet: binutils-2.30-79.el8.x86_64 202/224 Installing : gcc-8.3.1-5.1.el8.x86_64 203/224 Running scriptlet: gcc-8.3.1-5.1.el8.x86_64 203/224 Installing : annobin-9.23-1.el8.x86_64 204/224 Installing : libbabeltrace-1.5.4-3.el8.x86_64 205/224 Running scriptlet: libbabeltrace-1.5.4-3.el8.x86_64 205/224 Installing : libsecret-0.18.6-1.el8.x86_64 206/224 Installing : pinentry-1.1.0-2.el8.x86_64 207/224 Running scriptlet: pinentry-1.1.0-2.el8.x86_64 207/224 Installing : ima-evm-utils-1.1-5.el8.x86_64 208/224 Installing : libusbx-1.0.23-4.el8.x86_64 209/224 Installing : gnupg2-smime-2.2.20-2.el8.x86_64 210/224 Installing : gnupg2-2.2.20-2.el8.x86_64 211/224 Installing : rpm-build-libs-4.14.3-4.el8.x86_64 212/224 Running scriptlet: rpm-build-libs-4.14.3-4.el8.x86_64 212/224 Installing : guile-5:2.0.14-7.el8.x86_64 213/224 Running scriptlet: guile-5:2.0.14-7.el8.x86_64 213/224 Installing : gdb-headless-8.2-12.el8.x86_64 214/224 Installing : efi-srpm-macros-3-2.el8.noarch 215/224 Installing : redhat-rpm-config-123-1.el8.noarch 216/224 Installing : lua-srpm-macros-1-3.el8.noarch 217/224 Installing : elfutils-0.180-1.el8.x86_64 218/224 Installing : rpm-build-4.14.3-4.el8.x86_64 219/224 Installing : epel-rpm-macros-8-19.noarch 220/224 Installing : gcc-c++-8.3.1-5.1.el8.x86_64 221/224 Installing : fedpkg-minimal-1.2.0-1.el8.noarch 222/224 Installing : make-1:4.2.1-10.el8.x86_64 223/224 Running scriptlet: make-1:4.2.1-10.el8.x86_64 223/224 Installing : epel-release-8-10.el8.noarch 224/224 Running scriptlet: filesystem-3.8-3.el8.x86_64 224/224 Running scriptlet: glibc-all-langpacks-2.28-127.el8.x86_64 224/224 Running scriptlet: crypto-policies-scripts-20210209-1.gitbfb6bed.el 224/224 Running scriptlet: ca-certificates-2020.2.41-80.0.el8_2.noarch 224/224 Running scriptlet: guile-5:2.0.14-7.el8.x86_64 224/224 Running scriptlet: epel-release-8-10.el8.noarch 224/224 Verifying : libarchive-3.3.3-1.el8.x86_64 1/224 Verifying : acl-2.2.53-1.el8.x86_64 2/224 Verifying : audit-libs-3.0-0.17.20191104git1c2f876.el8.x86_6 3/224 Verifying : basesystem-11-5.el8.noarch 4/224 Verifying : bash-4.4.19-12.el8.x86_64 5/224 Verifying : binutils-2.30-79.el8.x86_64 6/224 Verifying : brotli-1.0.6-2.el8.x86_64 7/224 Verifying : bzip2-1.0.6-26.el8.x86_64 8/224 Verifying : bzip2-libs-1.0.6-26.el8.x86_64 9/224 Verifying : ca-certificates-2020.2.41-80.0.el8_2.noarch 10/224 Verifying : centos-gpg-keys-1:8-2.el8.noarch 11/224 Verifying : centos-linux-release-8.3-1.2011.el8.noarch 12/224 Verifying : centos-linux-repos-8-2.el8.noarch 13/224 Verifying : chkconfig-1.13-2.el8.x86_64 14/224 Verifying : coreutils-8.30-8.el8.x86_64 15/224 Verifying : coreutils-common-8.30-8.el8.x86_64 16/224 Verifying : cpio-2.12-8.el8.x86_64 17/224 Verifying : cracklib-2.9.6-15.el8.x86_64 18/224 Verifying : cracklib-dicts-2.9.6-15.el8.x86_64 19/224 Verifying : crypto-policies-20210209-1.gitbfb6bed.el8_3.noar 20/224 Verifying : crypto-policies-scripts-20210209-1.gitbfb6bed.el 21/224 Verifying : cryptsetup-libs-2.3.3-2.el8.x86_64 22/224 Verifying : curl-7.61.1-14.el8_3.1.x86_64 23/224 Verifying : cyrus-sasl-lib-2.1.27-5.el8.x86_64 24/224 Verifying : dbus-1:1.12.8-12.el8_3.x86_64 25/224 Verifying : dbus-common-1:1.12.8-12.el8_3.noarch 26/224 Verifying : dbus-daemon-1:1.12.8-12.el8_3.x86_64 27/224 Verifying : dbus-libs-1:1.12.8-12.el8_3.x86_64 28/224 Verifying : dbus-tools-1:1.12.8-12.el8_3.x86_64 29/224 Verifying : device-mapper-8:1.02.171-5.el8.x86_64 30/224 Verifying : device-mapper-libs-8:1.02.171-5.el8.x86_64 31/224 Verifying : diffutils-3.6-6.el8.x86_64 32/224 Verifying : dracut-049-95.git20200804.el8_3.4.x86_64 33/224 Verifying : elfutils-0.180-1.el8.x86_64 34/224 Verifying : elfutils-debuginfod-client-0.180-1.el8.x86_64 35/224 Verifying : elfutils-default-yama-scope-0.180-1.el8.noarch 36/224 Verifying : elfutils-libelf-0.180-1.el8.x86_64 37/224 Verifying : elfutils-libs-0.180-1.el8.x86_64 38/224 Verifying : expat-2.2.5-4.el8.x86_64 39/224 Verifying : file-5.33-16.el8_3.1.x86_64 40/224 Verifying : file-libs-5.33-16.el8_3.1.x86_64 41/224 Verifying : filesystem-3.8-3.el8.x86_64 42/224 Verifying : findutils-1:4.6.0-20.el8.x86_64 43/224 Verifying : gawk-4.2.1-1.el8.x86_64 44/224 Verifying : gdbm-1:1.18-1.el8.x86_64 45/224 Verifying : gdbm-libs-1:1.18-1.el8.x86_64 46/224 Verifying : gettext-0.19.8.1-17.el8.x86_64 47/224 Verifying : gettext-libs-0.19.8.1-17.el8.x86_64 48/224 Verifying : glib2-2.56.4-8.el8.x86_64 49/224 Verifying : glibc-2.28-127.el8.x86_64 50/224 Verifying : glibc-all-langpacks-2.28-127.el8.x86_64 51/224 Verifying : glibc-common-2.28-127.el8.x86_64 52/224 Verifying : glibc-devel-2.28-127.el8.x86_64 53/224 Verifying : glibc-headers-2.28-127.el8.x86_64 54/224 Verifying : gmp-1:6.1.2-10.el8.x86_64 55/224 Verifying : gnupg2-2.2.20-2.el8.x86_64 56/224 Verifying : gnupg2-smime-2.2.20-2.el8.x86_64 57/224 Verifying : gnutls-3.6.14-8.el8_3.x86_64 58/224 Verifying : grep-3.1-6.el8.x86_64 59/224 Verifying : grub2-common-1:2.02-90.el8_3.1.noarch 60/224 Verifying : grub2-tools-1:2.02-90.el8_3.1.x86_64 61/224 Verifying : grub2-tools-minimal-1:2.02-90.el8_3.1.x86_64 62/224 Verifying : grubby-8.40-41.el8.x86_64 63/224 Verifying : gzip-1.9-9.el8.x86_64 64/224 Verifying : hardlink-1:1.3-6.el8.x86_64 65/224 Verifying : ima-evm-utils-1.1-5.el8.x86_64 66/224 Verifying : info-6.5-6.el8.x86_64 67/224 Verifying : iptables-libs-1.8.4-15.el8_3.3.x86_64 68/224 Verifying : json-c-0.13.1-0.2.el8.x86_64 69/224 Verifying : kbd-2.0.4-10.el8.x86_64 70/224 Verifying : kbd-legacy-2.0.4-10.el8.noarch 71/224 Verifying : kbd-misc-2.0.4-10.el8.noarch 72/224 Verifying : kernel-headers-4.18.0-240.22.1.el8_3.x86_64 73/224 Verifying : keyutils-libs-1.5.10-6.el8.x86_64 74/224 Verifying : kmod-25-16.el8.x86_64 75/224 Verifying : kmod-libs-25-16.el8.x86_64 76/224 Verifying : kpartx-0.8.4-5.el8.x86_64 77/224 Verifying : krb5-libs-1.18.2-5.el8.x86_64 78/224 Verifying : libacl-2.2.53-1.el8.x86_64 79/224 Verifying : libassuan-2.5.1-3.el8.x86_64 80/224 Verifying : libattr-2.4.48-3.el8.x86_64 81/224 Verifying : libbabeltrace-1.5.4-3.el8.x86_64 82/224 Verifying : libblkid-2.32.1-24.el8.x86_64 83/224 Verifying : libcap-2.26-4.el8.x86_64 84/224 Verifying : libcap-ng-0.7.9-5.el8.x86_64 85/224 Verifying : libcom_err-1.45.6-1.el8.x86_64 86/224 Verifying : libcroco-0.6.12-4.el8_2.1.x86_64 87/224 Verifying : libcurl-7.61.1-14.el8_3.1.x86_64 88/224 Verifying : libdb-5.3.28-39.el8.x86_64 89/224 Verifying : libdb-utils-5.3.28-39.el8.x86_64 90/224 Verifying : libfdisk-2.32.1-24.el8.x86_64 91/224 Verifying : libffi-3.1-22.el8.x86_64 92/224 Verifying : libgcc-8.3.1-5.1.el8.x86_64 93/224 Verifying : libgcrypt-1.8.5-4.el8.x86_64 94/224 Verifying : libgomp-8.3.1-5.1.el8.x86_64 95/224 Verifying : libgpg-error-1.31-1.el8.x86_64 96/224 Verifying : libidn2-2.2.0-1.el8.x86_64 97/224 Verifying : libkcapi-1.2.0-2.el8.x86_64 98/224 Verifying : libkcapi-hmaccalc-1.2.0-2.el8.x86_64 99/224 Verifying : libksba-1.3.5-7.el8.x86_64 100/224 Verifying : libmetalink-0.1.3-7.el8.x86_64 101/224 Verifying : libmount-2.32.1-24.el8.x86_64 102/224 Verifying : libnghttp2-1.33.0-3.el8_2.1.x86_64 103/224 Verifying : libnsl2-1.2.0-2.20180605git4a062cf.el8.x86_64 104/224 Verifying : libpcap-14:1.9.1-4.el8.x86_64 105/224 Verifying : libpkgconf-1.4.2-1.el8.x86_64 106/224 Verifying : libpsl-0.20.2-6.el8.x86_64 107/224 Verifying : libpwquality-1.4.0-9.el8.x86_64 108/224 Verifying : libseccomp-2.4.3-1.el8.x86_64 109/224 Verifying : libsecret-0.18.6-1.el8.x86_64 110/224 Verifying : libselinux-2.9-4.el8_3.x86_64 111/224 Verifying : libsemanage-2.9-3.el8.x86_64 112/224 Verifying : libsepol-2.9-1.el8.x86_64 113/224 Verifying : libsigsegv-2.11-5.el8.x86_64 114/224 Verifying : libsmartcols-2.32.1-24.el8.x86_64 115/224 Verifying : libssh-0.9.4-2.el8.x86_64 116/224 Verifying : libssh-config-0.9.4-2.el8.noarch 117/224 Verifying : libstdc++-8.3.1-5.1.el8.x86_64 118/224 Verifying : libtasn1-4.13-3.el8.x86_64 119/224 Verifying : libtirpc-1.1.4-4.el8.x86_64 120/224 Verifying : libtool-ltdl-2.4.6-25.el8.x86_64 121/224 Verifying : libunistring-0.9.9-3.el8.x86_64 122/224 Verifying : libusbx-1.0.23-4.el8.x86_64 123/224 Verifying : libutempter-1.1.6-14.el8.x86_64 124/224 Verifying : libuuid-2.32.1-24.el8.x86_64 125/224 Verifying : libverto-0.3.0-5.el8.x86_64 126/224 Verifying : libxcrypt-4.1.1-4.el8.x86_64 127/224 Verifying : libxcrypt-devel-4.1.1-4.el8.x86_64 128/224 Verifying : libxml2-2.9.7-8.el8.x86_64 129/224 Verifying : libzstd-1.4.4-1.el8.x86_64 130/224 Verifying : lua-libs-5.3.4-11.el8.x86_64 131/224 Verifying : lz4-libs-1.8.3-2.el8.x86_64 132/224 Verifying : make-1:4.2.1-10.el8.x86_64 133/224 Verifying : memstrack-0.1.11-1.el8.x86_64 134/224 Verifying : mpfr-3.1.6-1.el8.x86_64 135/224 Verifying : ncurses-6.1-7.20180224.el8.x86_64 136/224 Verifying : ncurses-base-6.1-7.20180224.el8.noarch 137/224 Verifying : ncurses-libs-6.1-7.20180224.el8.x86_64 138/224 Verifying : nettle-3.4.1-4.el8_3.x86_64 139/224 Verifying : npth-1.5-4.el8.x86_64 140/224 Verifying : openldap-2.4.46-15.el8.x86_64 141/224 Verifying : openssl-1:1.1.1g-15.el8_3.x86_64 142/224 Verifying : openssl-libs-1:1.1.1g-15.el8_3.x86_64 143/224 Verifying : openssl-pkcs11-0.4.10-2.el8.x86_64 144/224 Verifying : os-prober-1.74-6.el8.x86_64 145/224 Verifying : p11-kit-0.23.14-5.el8_0.x86_64 146/224 Verifying : p11-kit-trust-0.23.14-5.el8_0.x86_64 147/224 Verifying : pam-1.3.1-11.el8.x86_64 148/224 Verifying : patch-2.7.6-11.el8.x86_64 149/224 Verifying : pcre-8.42-4.el8.x86_64 150/224 Verifying : pcre2-10.32-2.el8.x86_64 151/224 Verifying : pigz-2.4-4.el8.x86_64 152/224 Verifying : pkgconf-1.4.2-1.el8.x86_64 153/224 Verifying : pkgconf-m4-1.4.2-1.el8.noarch 154/224 Verifying : pkgconf-pkg-config-1.4.2-1.el8.x86_64 155/224 Verifying : platform-python-3.6.8-31.el8.x86_64 156/224 Verifying : platform-python-pip-9.0.3-18.el8.noarch 157/224 Verifying : platform-python-setuptools-39.2.0-6.el8.noarch 158/224 Verifying : popt-1.16-14.el8.x86_64 159/224 Verifying : procps-ng-3.3.15-3.el8_3.1.x86_64 160/224 Verifying : publicsuffix-list-dafsa-20180723-1.el8.noarch 161/224 Verifying : python3-libs-3.6.8-31.el8.x86_64 162/224 Verifying : python3-pip-wheel-9.0.3-18.el8.noarch 163/224 Verifying : python3-setuptools-wheel-39.2.0-6.el8.noarch 164/224 Verifying : readline-7.0-10.el8.x86_64 165/224 Verifying : rpm-4.14.3-4.el8.x86_64 166/224 Verifying : rpm-build-libs-4.14.3-4.el8.x86_64 167/224 Verifying : rpm-libs-4.14.3-4.el8.x86_64 168/224 Verifying : sed-4.5-2.el8.x86_64 169/224 Verifying : setup-2.12.2-6.el8.noarch 170/224 Verifying : shadow-utils-2:4.6-11.el8.x86_64 171/224 Verifying : shared-mime-info-1.9-3.el8.x86_64 172/224 Verifying : sqlite-libs-3.26.0-11.el8.x86_64 173/224 Verifying : systemd-239-41.el8_3.2.x86_64 174/224 Verifying : systemd-libs-239-41.el8_3.2.x86_64 175/224 Verifying : systemd-pam-239-41.el8_3.2.x86_64 176/224 Verifying : systemd-udev-239-41.el8_3.2.x86_64 177/224 Verifying : tar-2:1.30-5.el8.x86_64 178/224 Verifying : trousers-0.3.14-4.el8.x86_64 179/224 Verifying : trousers-lib-0.3.14-4.el8.x86_64 180/224 Verifying : tzdata-2021a-1.el8.noarch 181/224 Verifying : unzip-6.0-43.el8.x86_64 182/224 Verifying : util-linux-2.32.1-24.el8.x86_64 183/224 Verifying : which-2.21-12.el8.x86_64 184/224 Verifying : xz-5.2.4-3.el8.x86_64 185/224 Verifying : xz-libs-5.2.4-3.el8.x86_64 186/224 Verifying : zip-3.0-23.el8.x86_64 187/224 Verifying : zlib-1.2.11-16.2.el8_3.x86_64 188/224 Verifying : annobin-9.23-1.el8.x86_64 189/224 Verifying : cpp-8.3.1-5.1.el8.x86_64 190/224 Verifying : dwz-0.12-9.el8.x86_64 191/224 Verifying : efi-srpm-macros-3-2.el8.noarch 192/224 Verifying : gc-7.6.4-3.el8.x86_64 193/224 Verifying : gcc-8.3.1-5.1.el8.x86_64 194/224 Verifying : gcc-c++-8.3.1-5.1.el8.x86_64 195/224 Verifying : gdb-headless-8.2-12.el8.x86_64 196/224 Verifying : ghc-srpm-macros-1.4.2-7.el8.noarch 197/224 Verifying : go-srpm-macros-2-16.el8.noarch 198/224 Verifying : guile-5:2.0.14-7.el8.x86_64 199/224 Verifying : isl-0.16.1-6.el8.x86_64 200/224 Verifying : libatomic_ops-7.6.2-3.el8.x86_64 201/224 Verifying : libipt-1.6.1-8.el8.x86_64 202/224 Verifying : libmpc-1.0.2-9.el8.x86_64 203/224 Verifying : libstdc++-devel-8.3.1-5.1.el8.x86_64 204/224 Verifying : libxkbcommon-0.9.1-1.el8.x86_64 205/224 Verifying : ocaml-srpm-macros-5-4.el8.noarch 206/224 Verifying : openblas-srpm-macros-2-2.el8.noarch 207/224 Verifying : perl-srpm-macros-1-25.el8.noarch 208/224 Verifying : pinentry-1.1.0-2.el8.x86_64 209/224 Verifying : python-rpm-macros-3-39.el8.noarch 210/224 Verifying : python-srpm-macros-3-39.el8.noarch 211/224 Verifying : python2-rpm-macros-3-38.module_el8.3.0+478+7570e 212/224 Verifying : python3-rpm-macros-3-39.el8.noarch 213/224 Verifying : qt5-srpm-macros-5.12.5-3.el8.noarch 214/224 Verifying : redhat-rpm-config-123-1.el8.noarch 215/224 Verifying : rpm-build-4.14.3-4.el8.x86_64 216/224 Verifying : rust-srpm-macros-5-2.el8.noarch 217/224 Verifying : xkeyboard-config-2.28-1.el8.noarch 218/224 Verifying : zstd-1.4.4-1.el8.x86_64 219/224 Verifying : epel-release-8-10.el8.noarch 220/224 Verifying : epel-rpm-macros-8-19.noarch 221/224 Verifying : fedpkg-minimal-1.2.0-1.el8.noarch 222/224 Verifying : fpc-srpm-macros-1.3-1.el8.noarch 223/224 Verifying : lua-srpm-macros-1-3.el8.noarch 224/224 Installed: acl-2.2.53-1.el8.x86_64 annobin-9.23-1.el8.x86_64 audit-libs-3.0-0.17.20191104git1c2f876.el8.x86_64 basesystem-11-5.el8.noarch bash-4.4.19-12.el8.x86_64 binutils-2.30-79.el8.x86_64 brotli-1.0.6-2.el8.x86_64 bzip2-1.0.6-26.el8.x86_64 bzip2-libs-1.0.6-26.el8.x86_64 ca-certificates-2020.2.41-80.0.el8_2.noarch centos-gpg-keys-1:8-2.el8.noarch centos-linux-release-8.3-1.2011.el8.noarch centos-linux-repos-8-2.el8.noarch chkconfig-1.13-2.el8.x86_64 coreutils-8.30-8.el8.x86_64 coreutils-common-8.30-8.el8.x86_64 cpio-2.12-8.el8.x86_64 cpp-8.3.1-5.1.el8.x86_64 cracklib-2.9.6-15.el8.x86_64 cracklib-dicts-2.9.6-15.el8.x86_64 crypto-policies-20210209-1.gitbfb6bed.el8_3.noarch crypto-policies-scripts-20210209-1.gitbfb6bed.el8_3.noarch cryptsetup-libs-2.3.3-2.el8.x86_64 curl-7.61.1-14.el8_3.1.x86_64 cyrus-sasl-lib-2.1.27-5.el8.x86_64 dbus-1:1.12.8-12.el8_3.x86_64 dbus-common-1:1.12.8-12.el8_3.noarch dbus-daemon-1:1.12.8-12.el8_3.x86_64 dbus-libs-1:1.12.8-12.el8_3.x86_64 dbus-tools-1:1.12.8-12.el8_3.x86_64 device-mapper-8:1.02.171-5.el8.x86_64 device-mapper-libs-8:1.02.171-5.el8.x86_64 diffutils-3.6-6.el8.x86_64 dracut-049-95.git20200804.el8_3.4.x86_64 dwz-0.12-9.el8.x86_64 efi-srpm-macros-3-2.el8.noarch elfutils-0.180-1.el8.x86_64 elfutils-debuginfod-client-0.180-1.el8.x86_64 elfutils-default-yama-scope-0.180-1.el8.noarch elfutils-libelf-0.180-1.el8.x86_64 elfutils-libs-0.180-1.el8.x86_64 epel-release-8-10.el8.noarch epel-rpm-macros-8-19.noarch expat-2.2.5-4.el8.x86_64 fedpkg-minimal-1.2.0-1.el8.noarch file-5.33-16.el8_3.1.x86_64 file-libs-5.33-16.el8_3.1.x86_64 filesystem-3.8-3.el8.x86_64 findutils-1:4.6.0-20.el8.x86_64 fpc-srpm-macros-1.3-1.el8.noarch gawk-4.2.1-1.el8.x86_64 gc-7.6.4-3.el8.x86_64 gcc-8.3.1-5.1.el8.x86_64 gcc-c++-8.3.1-5.1.el8.x86_64 gdb-headless-8.2-12.el8.x86_64 gdbm-1:1.18-1.el8.x86_64 gdbm-libs-1:1.18-1.el8.x86_64 gettext-0.19.8.1-17.el8.x86_64 gettext-libs-0.19.8.1-17.el8.x86_64 ghc-srpm-macros-1.4.2-7.el8.noarch glib2-2.56.4-8.el8.x86_64 glibc-2.28-127.el8.x86_64 glibc-all-langpacks-2.28-127.el8.x86_64 glibc-common-2.28-127.el8.x86_64 glibc-devel-2.28-127.el8.x86_64 glibc-headers-2.28-127.el8.x86_64 gmp-1:6.1.2-10.el8.x86_64 gnupg2-2.2.20-2.el8.x86_64 gnupg2-smime-2.2.20-2.el8.x86_64 gnutls-3.6.14-8.el8_3.x86_64 go-srpm-macros-2-16.el8.noarch grep-3.1-6.el8.x86_64 grub2-common-1:2.02-90.el8_3.1.noarch grub2-tools-1:2.02-90.el8_3.1.x86_64 grub2-tools-minimal-1:2.02-90.el8_3.1.x86_64 grubby-8.40-41.el8.x86_64 guile-5:2.0.14-7.el8.x86_64 gzip-1.9-9.el8.x86_64 hardlink-1:1.3-6.el8.x86_64 ima-evm-utils-1.1-5.el8.x86_64 info-6.5-6.el8.x86_64 iptables-libs-1.8.4-15.el8_3.3.x86_64 isl-0.16.1-6.el8.x86_64 json-c-0.13.1-0.2.el8.x86_64 kbd-2.0.4-10.el8.x86_64 kbd-legacy-2.0.4-10.el8.noarch kbd-misc-2.0.4-10.el8.noarch kernel-headers-4.18.0-240.22.1.el8_3.x86_64 keyutils-libs-1.5.10-6.el8.x86_64 kmod-25-16.el8.x86_64 kmod-libs-25-16.el8.x86_64 kpartx-0.8.4-5.el8.x86_64 krb5-libs-1.18.2-5.el8.x86_64 libacl-2.2.53-1.el8.x86_64 libarchive-3.3.3-1.el8.x86_64 libassuan-2.5.1-3.el8.x86_64 libatomic_ops-7.6.2-3.el8.x86_64 libattr-2.4.48-3.el8.x86_64 libbabeltrace-1.5.4-3.el8.x86_64 libblkid-2.32.1-24.el8.x86_64 libcap-2.26-4.el8.x86_64 libcap-ng-0.7.9-5.el8.x86_64 libcom_err-1.45.6-1.el8.x86_64 libcroco-0.6.12-4.el8_2.1.x86_64 libcurl-7.61.1-14.el8_3.1.x86_64 libdb-5.3.28-39.el8.x86_64 libdb-utils-5.3.28-39.el8.x86_64 libfdisk-2.32.1-24.el8.x86_64 libffi-3.1-22.el8.x86_64 libgcc-8.3.1-5.1.el8.x86_64 libgcrypt-1.8.5-4.el8.x86_64 libgomp-8.3.1-5.1.el8.x86_64 libgpg-error-1.31-1.el8.x86_64 libidn2-2.2.0-1.el8.x86_64 libipt-1.6.1-8.el8.x86_64 libkcapi-1.2.0-2.el8.x86_64 libkcapi-hmaccalc-1.2.0-2.el8.x86_64 libksba-1.3.5-7.el8.x86_64 libmetalink-0.1.3-7.el8.x86_64 libmount-2.32.1-24.el8.x86_64 libmpc-1.0.2-9.el8.x86_64 libnghttp2-1.33.0-3.el8_2.1.x86_64 libnsl2-1.2.0-2.20180605git4a062cf.el8.x86_64 libpcap-14:1.9.1-4.el8.x86_64 libpkgconf-1.4.2-1.el8.x86_64 libpsl-0.20.2-6.el8.x86_64 libpwquality-1.4.0-9.el8.x86_64 libseccomp-2.4.3-1.el8.x86_64 libsecret-0.18.6-1.el8.x86_64 libselinux-2.9-4.el8_3.x86_64 libsemanage-2.9-3.el8.x86_64 libsepol-2.9-1.el8.x86_64 libsigsegv-2.11-5.el8.x86_64 libsmartcols-2.32.1-24.el8.x86_64 libssh-0.9.4-2.el8.x86_64 libssh-config-0.9.4-2.el8.noarch libstdc++-8.3.1-5.1.el8.x86_64 libstdc++-devel-8.3.1-5.1.el8.x86_64 libtasn1-4.13-3.el8.x86_64 libtirpc-1.1.4-4.el8.x86_64 libtool-ltdl-2.4.6-25.el8.x86_64 libunistring-0.9.9-3.el8.x86_64 libusbx-1.0.23-4.el8.x86_64 libutempter-1.1.6-14.el8.x86_64 libuuid-2.32.1-24.el8.x86_64 libverto-0.3.0-5.el8.x86_64 libxcrypt-4.1.1-4.el8.x86_64 libxcrypt-devel-4.1.1-4.el8.x86_64 libxkbcommon-0.9.1-1.el8.x86_64 libxml2-2.9.7-8.el8.x86_64 libzstd-1.4.4-1.el8.x86_64 lua-libs-5.3.4-11.el8.x86_64 lua-srpm-macros-1-3.el8.noarch lz4-libs-1.8.3-2.el8.x86_64 make-1:4.2.1-10.el8.x86_64 memstrack-0.1.11-1.el8.x86_64 mpfr-3.1.6-1.el8.x86_64 ncurses-6.1-7.20180224.el8.x86_64 ncurses-base-6.1-7.20180224.el8.noarch ncurses-libs-6.1-7.20180224.el8.x86_64 nettle-3.4.1-4.el8_3.x86_64 npth-1.5-4.el8.x86_64 ocaml-srpm-macros-5-4.el8.noarch openblas-srpm-macros-2-2.el8.noarch openldap-2.4.46-15.el8.x86_64 openssl-1:1.1.1g-15.el8_3.x86_64 openssl-libs-1:1.1.1g-15.el8_3.x86_64 openssl-pkcs11-0.4.10-2.el8.x86_64 os-prober-1.74-6.el8.x86_64 p11-kit-0.23.14-5.el8_0.x86_64 p11-kit-trust-0.23.14-5.el8_0.x86_64 pam-1.3.1-11.el8.x86_64 patch-2.7.6-11.el8.x86_64 pcre-8.42-4.el8.x86_64 pcre2-10.32-2.el8.x86_64 perl-srpm-macros-1-25.el8.noarch pigz-2.4-4.el8.x86_64 pinentry-1.1.0-2.el8.x86_64 pkgconf-1.4.2-1.el8.x86_64 pkgconf-m4-1.4.2-1.el8.noarch pkgconf-pkg-config-1.4.2-1.el8.x86_64 platform-python-3.6.8-31.el8.x86_64 platform-python-pip-9.0.3-18.el8.noarch platform-python-setuptools-39.2.0-6.el8.noarch popt-1.16-14.el8.x86_64 procps-ng-3.3.15-3.el8_3.1.x86_64 publicsuffix-list-dafsa-20180723-1.el8.noarch python-rpm-macros-3-39.el8.noarch python-srpm-macros-3-39.el8.noarch python2-rpm-macros-3-38.module_el8.3.0+478+7570e00c.noarch python3-libs-3.6.8-31.el8.x86_64 python3-pip-wheel-9.0.3-18.el8.noarch python3-rpm-macros-3-39.el8.noarch python3-setuptools-wheel-39.2.0-6.el8.noarch qt5-srpm-macros-5.12.5-3.el8.noarch readline-7.0-10.el8.x86_64 redhat-rpm-config-123-1.el8.noarch rpm-4.14.3-4.el8.x86_64 rpm-build-4.14.3-4.el8.x86_64 rpm-build-libs-4.14.3-4.el8.x86_64 rpm-libs-4.14.3-4.el8.x86_64 rust-srpm-macros-5-2.el8.noarch sed-4.5-2.el8.x86_64 setup-2.12.2-6.el8.noarch shadow-utils-2:4.6-11.el8.x86_64 shared-mime-info-1.9-3.el8.x86_64 sqlite-libs-3.26.0-11.el8.x86_64 systemd-239-41.el8_3.2.x86_64 systemd-libs-239-41.el8_3.2.x86_64 systemd-pam-239-41.el8_3.2.x86_64 systemd-udev-239-41.el8_3.2.x86_64 tar-2:1.30-5.el8.x86_64 trousers-0.3.14-4.el8.x86_64 trousers-lib-0.3.14-4.el8.x86_64 tzdata-2021a-1.el8.noarch unzip-6.0-43.el8.x86_64 util-linux-2.32.1-24.el8.x86_64 which-2.21-12.el8.x86_64 xkeyboard-config-2.28-1.el8.noarch xz-5.2.4-3.el8.x86_64 xz-libs-5.2.4-3.el8.x86_64 zip-3.0-23.el8.x86_64 zlib-1.2.11-16.2.el8_3.x86_64 zstd-1.4.4-1.el8.x86_64 Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: libselinux-2.9-4.el8_3.x86_64 gdbm-libs-1.18-1.el8.x86_64 libtasn1-4.13-3.el8.x86_64 grub2-tools-minimal-2.02-90.el8_3.1.x86_64 audit-libs-3.0-0.17.20191104git1c2f876.el8.x86_64 libkcapi-hmaccalc-1.2.0-2.el8.x86_64 gnutls-3.6.14-8.el8_3.x86_64 elfutils-default-yama-scope-0.180-1.el8.noarch libsemanage-2.9-3.el8.x86_64 libunistring-0.9.9-3.el8.x86_64 acl-2.2.53-1.el8.x86_64 efi-srpm-macros-3-2.el8.noarch dbus-daemon-1.12.8-12.el8_3.x86_64 dbus-1.12.8-12.el8_3.x86_64 gdbm-1.18-1.el8.x86_64 cracklib-2.9.6-15.el8.x86_64 qt5-srpm-macros-5.12.5-3.el8.noarch sqlite-libs-3.26.0-11.el8.x86_64 setup-2.12.2-6.el8.noarch pkgconf-m4-1.4.2-1.el8.noarch file-libs-5.33-16.el8_3.1.x86_64 json-c-0.13.1-0.2.el8.x86_64 ncurses-base-6.1-7.20180224.el8.noarch glibc-devel-2.28-127.el8.x86_64 elfutils-debuginfod-client-0.180-1.el8.x86_64 kbd-misc-2.0.4-10.el8.noarch libuuid-2.32.1-24.el8.x86_64 platform-python-setuptools-39.2.0-6.el8.noarch elfutils-libs-0.180-1.el8.x86_64 patch-2.7.6-11.el8.x86_64 gcc-c++-8.3.1-5.1.el8.x86_64 grub2-tools-2.02-90.el8_3.1.x86_64 kmod-libs-25-16.el8.x86_64 zip-3.0-23.el8.x86_64 python3-pip-wheel-9.0.3-18.el8.noarch python-rpm-macros-3-39.el8.noarch fpc-srpm-macros-1.3-1.el8.noarch mpfr-3.1.6-1.el8.x86_64 expat-2.2.5-4.el8.x86_64 libmpc-1.0.2-9.el8.x86_64 file-5.33-16.el8_3.1.x86_64 ocaml-srpm-macros-5-4.el8.noarch libxcrypt-devel-4.1.1-4.el8.x86_64 go-srpm-macros-2-16.el8.noarch kpartx-0.8.4-5.el8.x86_64 gettext-libs-0.19.8.1-17.el8.x86_64 pam-1.3.1-11.el8.x86_64 systemd-239-41.el8_3.2.x86_64 cpp-8.3.1-5.1.el8.x86_64 chkconfig-1.13-2.el8.x86_64 p11-kit-0.23.14-5.el8_0.x86_64 grubby-8.40-41.el8.x86_64 shared-mime-info-1.9-3.el8.x86_64 libtirpc-1.1.4-4.el8.x86_64 findutils-4.6.0-20.el8.x86_64 grep-3.1-6.el8.x86_64 epel-release-8-10.el8.noarch glibc-all-langpacks-2.28-127.el8.x86_64 epel-rpm-macros-8-19.noarch device-mapper-libs-1.02.171-5.el8.x86_64 rpm-build-4.14.3-4.el8.x86_64 gpg-pubkey-2f86d6a1-5cf7cefb binutils-2.30-79.el8.x86_64 libpwquality-1.4.0-9.el8.x86_64 gmp-6.1.2-10.el8.x86_64 filesystem-3.8-3.el8.x86_64 gnupg2-smime-2.2.20-2.el8.x86_64 nettle-3.4.1-4.el8_3.x86_64 hardlink-1.3-6.el8.x86_64 systemd-libs-239-41.el8_3.2.x86_64 libssh-0.9.4-2.el8.x86_64 centos-linux-repos-8-2.el8.noarch libkcapi-1.2.0-2.el8.x86_64 cpio-2.12-8.el8.x86_64 fedpkg-minimal-1.2.0-1.el8.noarch libcroco-0.6.12-4.el8_2.1.x86_64 util-linux-2.32.1-24.el8.x86_64 systemd-pam-239-41.el8_3.2.x86_64 ghc-srpm-macros-1.4.2-7.el8.noarch gcc-8.3.1-5.1.el8.x86_64 pkgconf-1.4.2-1.el8.x86_64 libxcrypt-4.1.1-4.el8.x86_64 libatomic_ops-7.6.2-3.el8.x86_64 libcurl-7.61.1-14.el8_3.1.x86_64 libsigsegv-2.11-5.el8.x86_64 libbabeltrace-1.5.4-3.el8.x86_64 libgomp-8.3.1-5.1.el8.x86_64 zstd-1.4.4-1.el8.x86_64 cryptsetup-libs-2.3.3-2.el8.x86_64 tar-1.30-5.el8.x86_64 gawk-4.2.1-1.el8.x86_64 libipt-1.6.1-8.el8.x86_64 libpcap-1.9.1-4.el8.x86_64 gzip-1.9-9.el8.x86_64 glibc-common-2.28-127.el8.x86_64 pcre-8.42-4.el8.x86_64 curl-7.61.1-14.el8_3.1.x86_64 ima-evm-utils-1.1-5.el8.x86_64 pcre2-10.32-2.el8.x86_64 libssh-config-0.9.4-2.el8.noarch pigz-2.4-4.el8.x86_64 openldap-2.4.46-15.el8.x86_64 krb5-libs-1.18.2-5.el8.x86_64 shadow-utils-4.6-11.el8.x86_64 iptables-libs-1.8.4-15.el8_3.3.x86_64 libgcrypt-1.8.5-4.el8.x86_64 libattr-2.4.48-3.el8.x86_64 rpm-4.14.3-4.el8.x86_64 libgpg-error-1.31-1.el8.x86_64 libseccomp-2.4.3-1.el8.x86_64 ncurses-libs-6.1-7.20180224.el8.x86_64 crypto-policies-scripts-20210209-1.gitbfb6bed.el8_3.noarch dwz-0.12-9.el8.x86_64 dbus-common-1.12.8-12.el8_3.noarch libpsl-0.20.2-6.el8.x86_64 libnsl2-1.2.0-2.20180605git4a062cf.el8.x86_64 gc-7.6.4-3.el8.x86_64 lua-libs-5.3.4-11.el8.x86_64 xz-libs-5.2.4-3.el8.x86_64 npth-1.5-4.el8.x86_64 libsecret-0.18.6-1.el8.x86_64 bzip2-libs-1.0.6-26.el8.x86_64 lz4-libs-1.8.3-2.el8.x86_64 glibc-headers-2.28-127.el8.x86_64 libtool-ltdl-2.4.6-25.el8.x86_64 info-6.5-6.el8.x86_64 xz-5.2.4-3.el8.x86_64 libfdisk-2.32.1-24.el8.x86_64 dbus-libs-1.12.8-12.el8_3.x86_64 coreutils-8.30-8.el8.x86_64 libksba-1.3.5-7.el8.x86_64 cracklib-dicts-2.9.6-15.el8.x86_64 python3-setuptools-wheel-39.2.0-6.el8.noarch libassuan-2.5.1-3.el8.x86_64 dbus-tools-1.12.8-12.el8_3.x86_64 python-srpm-macros-3-39.el8.noarch centos-gpg-keys-8-2.el8.noarch openssl-pkcs11-0.4.10-2.el8.x86_64 python3-rpm-macros-3-39.el8.noarch unzip-6.0-43.el8.x86_64 brotli-1.0.6-2.el8.x86_64 openssl-1.1.1g-15.el8_3.x86_64 trousers-lib-0.3.14-4.el8.x86_64 memstrack-0.1.11-1.el8.x86_64 glibc-2.28-127.el8.x86_64 isl-0.16.1-6.el8.x86_64 which-2.21-12.el8.x86_64 elfutils-0.180-1.el8.x86_64 gnupg2-2.2.20-2.el8.x86_64 cyrus-sasl-lib-2.1.27-5.el8.x86_64 rpm-libs-4.14.3-4.el8.x86_64 libpkgconf-1.4.2-1.el8.x86_64 platform-python-pip-9.0.3-18.el8.noarch libxml2-2.9.7-8.el8.x86_64 openssl-libs-1.1.1g-15.el8_3.x86_64 dracut-049-95.git20200804.el8_3.4.x86_64 libzstd-1.4.4-1.el8.x86_64 readline-7.0-10.el8.x86_64 bzip2-1.0.6-26.el8.x86_64 basesystem-11-5.el8.noarch ca-certificates-2020.2.41-80.0.el8_2.noarch gdb-headless-8.2-12.el8.x86_64 libutempter-1.1.6-14.el8.x86_64 rpm-build-libs-4.14.3-4.el8.x86_64 ncurses-6.1-7.20180224.el8.x86_64 trousers-0.3.14-4.el8.x86_64 libcom_err-1.45.6-1.el8.x86_64 zlib-1.2.11-16.2.el8_3.x86_64 libarchive-3.3.3-1.el8.x86_64 glib2-2.56.4-8.el8.x86_64 keyutils-libs-1.5.10-6.el8.x86_64 kbd-2.0.4-10.el8.x86_64 bash-4.4.19-12.el8.x86_64 annobin-9.23-1.el8.x86_64 tzdata-2021a-1.el8.noarch coreutils-common-8.30-8.el8.x86_64 libusbx-1.0.23-4.el8.x86_64 kernel-headers-4.18.0-240.22.1.el8_3.x86_64 libmetalink-0.1.3-7.el8.x86_64 libdb-utils-5.3.28-39.el8.x86_64 popt-1.16-14.el8.x86_64 libnghttp2-1.33.0-3.el8_2.1.x86_64 device-mapper-1.02.171-5.el8.x86_64 libblkid-2.32.1-24.el8.x86_64 elfutils-libelf-0.180-1.el8.x86_64 libxkbcommon-0.9.1-1.el8.x86_64 libdb-5.3.28-39.el8.x86_64 guile-2.0.14-7.el8.x86_64 make-4.2.1-10.el8.x86_64 os-prober-1.74-6.el8.x86_64 procps-ng-3.3.15-3.el8_3.1.x86_64 xkeyboard-config-2.28-1.el8.noarch openblas-srpm-macros-2-2.el8.noarch libsepol-2.9-1.el8.x86_64 libidn2-2.2.0-1.el8.x86_64 libsmartcols-2.32.1-24.el8.x86_64 python2-rpm-macros-3-38.module_el8.3.0+478+7570e00c.noarch gettext-0.19.8.1-17.el8.x86_64 systemd-udev-239-41.el8_3.2.x86_64 gpg-pubkey-8483c65d-5ccc5b19 diffutils-3.6-6.el8.x86_64 libverto-0.3.0-5.el8.x86_64 libgcc-8.3.1-5.1.el8.x86_64 centos-linux-release-8.3-1.2011.el8.noarch libcap-2.26-4.el8.x86_64 crypto-policies-20210209-1.gitbfb6bed.el8_3.noarch libcap-ng-0.7.9-5.el8.x86_64 pinentry-1.1.0-2.el8.x86_64 perl-srpm-macros-1-25.el8.noarch sed-4.5-2.el8.x86_64 rust-srpm-macros-5-2.el8.noarch p11-kit-trust-0.23.14-5.el8_0.x86_64 lua-srpm-macros-1-3.el8.noarch publicsuffix-list-dafsa-20180723-1.el8.noarch python3-libs-3.6.8-31.el8.x86_64 platform-python-3.6.8-31.el8.x86_64 kmod-25-16.el8.x86_64 kbd-legacy-2.0.4-10.el8.noarch pkgconf-pkg-config-1.4.2-1.el8.x86_64 libmount-2.32.1-24.el8.x86_64 libffi-3.1-22.el8.x86_64 grub2-common-2.02-90.el8_3.1.noarch libacl-2.2.53-1.el8.x86_64 libstdc++-8.3.1-5.1.el8.x86_64 libstdc++-devel-8.3.1-5.1.el8.x86_64 redhat-rpm-config-123-1.el8.noarch Start: buildsrpm Start: rpmbuild -bs warning: bogus date in %changelog: Thu Nov 04 2009 Tim Fenn - 1.2.0-1 Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/apbs-3.0.0-7.1.el8.ors.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/epel-8-x86_64-1620741126.795941/root/var/log/dnf.rpm.log /var/lib/mock/epel-8-x86_64-1620741126.795941/root/var/log/dnf.librepo.log /var/lib/mock/epel-8-x86_64-1620741126.795941/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-w2pog_r2/apbs/apbs.spec) Config(child) 1 minutes 29 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/apbs-3.0.0-7.1.el8.ors.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1620741126.795941 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 2.10 starting (python version = 3.9.1, NVR = mock-2.10-1.fc33)... Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/apbs-3.0.0-7.1.el8.ors.src.rpm) Config(epel-8-x86_64) Start: clean chroot Finish: clean chroot Start: chroot init INFO: mounting tmpfs at /var/lib/mock/epel-8-x86_64-1620741126.795941/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 2.10 INFO: Mock Version: 2.10 Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk Invalid configuration value: failovermethod=priority in /var/lib/mock/epel-8-x86_64-1620741126.795941/root/etc/dnf/dnf.conf; Configuration: OptionBinding with id "failovermethod" does not exist Invalid configuration value: failovermethod=priority in /var/lib/mock/epel-8-x86_64-1620741126.795941/root/etc/dnf/dnf.conf; Configuration: OptionBinding with id "failovermethod" does not exist Invalid configuration value: failovermethod=priority in /var/lib/mock/epel-8-x86_64-1620741126.795941/root/etc/dnf/dnf.conf; Configuration: OptionBinding with id "failovermethod" does not exist Invalid configuration value: failovermethod=priority in /var/lib/mock/epel-8-x86_64-1620741126.795941/root/etc/dnf/dnf.conf; Configuration: OptionBinding with id "failovermethod" does not exist Invalid configuration value: failovermethod=priority in /var/lib/mock/epel-8-x86_64-1620741126.795941/root/etc/dnf/dnf.conf; Configuration: OptionBinding with id "failovermethod" does not exist Invalid configuration value: failovermethod=priority in /var/lib/mock/epel-8-x86_64-1620741126.795941/root/etc/dnf/dnf.conf; Configuration: OptionBinding with id "failovermethod" does not exist Invalid configuration value: failovermethod=priority in /var/lib/mock/epel-8-x86_64-1620741126.795941/root/etc/dnf/dnf.conf; Configuration: OptionBinding with id "failovermethod" does not exist Invalid configuration value: failovermethod=priority in /var/lib/mock/epel-8-x86_64-1620741126.795941/root/etc/dnf/dnf.conf; Configuration: OptionBinding with id "failovermethod" does not exist Copr repository 70 kB/s | 3.6 kB 00:00 Additional repo copr_orrisroot_el8_devel_epel_8 63 kB/s | 3.6 kB 00:00 CentOS-8 - Base 21 MB/s | 2.3 MB 00:00 CentOS-8 - AppStream 16 MB/s | 6.3 MB 00:00 CentOS-8 - PowerTools 8.7 MB/s | 2.0 MB 00:00 CentOS-8 - Extras 42 kB/s | 9.6 kB 00:00 Extra Packages for Enterprise Linux 8 - x86_64 27 kB/s | 4.7 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for apbs-3.0.0-7.1.el8.ors.src.rpm Start: build setup for apbs-3.0.0-7.1.el8.ors.src.rpm warning: bogus date in %changelog: Thu Nov 04 2009 Tim Fenn - 1.2.0-1 Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/apbs-3.0.0-7.1.el8.ors.src.rpm No matches found for the following disable plugin patterns: local, spacewalk Invalid configuration value: failovermethod=priority in /var/lib/mock/epel-8-x86_64-1620741126.795941/root/etc/dnf/dnf.conf; Configuration: OptionBinding with id "failovermethod" does not exist Invalid configuration value: failovermethod=priority in /var/lib/mock/epel-8-x86_64-1620741126.795941/root/etc/dnf/dnf.conf; Configuration: OptionBinding with id "failovermethod" does not exist Invalid configuration value: failovermethod=priority in /var/lib/mock/epel-8-x86_64-1620741126.795941/root/etc/dnf/dnf.conf; Configuration: OptionBinding with id "failovermethod" does not exist Invalid configuration value: failovermethod=priority in /var/lib/mock/epel-8-x86_64-1620741126.795941/root/etc/dnf/dnf.conf; Configuration: OptionBinding with id "failovermethod" does not exist Invalid configuration value: failovermethod=priority in /var/lib/mock/epel-8-x86_64-1620741126.795941/root/etc/dnf/dnf.conf; Configuration: OptionBinding with id "failovermethod" does not exist Invalid configuration value: failovermethod=priority in /var/lib/mock/epel-8-x86_64-1620741126.795941/root/etc/dnf/dnf.conf; Configuration: OptionBinding with id "failovermethod" does not exist Invalid configuration value: failovermethod=priority in /var/lib/mock/epel-8-x86_64-1620741126.795941/root/etc/dnf/dnf.conf; Configuration: OptionBinding with id "failovermethod" does not exist Invalid configuration value: failovermethod=priority in /var/lib/mock/epel-8-x86_64-1620741126.795941/root/etc/dnf/dnf.conf; Configuration: OptionBinding with id "failovermethod" does not exist Copr repository 94 kB/s | 3.6 kB 00:00 Additional repo copr_orrisroot_el8_devel_epel_8 101 kB/s | 3.6 kB 00:00 CentOS-8 - Base 21 kB/s | 3.9 kB 00:00 CentOS-8 - AppStream 22 kB/s | 4.3 kB 00:00 CentOS-8 - PowerTools 25 kB/s | 4.3 kB 00:00 CentOS-8 - Extras 8.8 kB/s | 1.5 kB 00:00 Extra Packages for Enterprise Linux 8 - x86_64 28 kB/s | 4.7 kB 00:00 Package gcc-c++-8.3.1-5.1.el8.x86_64 is already installed. Package make-1:4.2.1-10.el8.x86_64 is already installed. Dependencies resolved. ====================================================================================================================================== Package Arch Version Repository Size ====================================================================================================================================== Installing: cmake  x86_64 3.18.2-9.el8 copr_orrisroot_el8_devel_epel_8_basearch 9.8 M doxygen  x86_64 1:1.8.14-12.el8 powertools 3.9 M graphviz  x86_64 2.40.1-40.el8 appstream 1.7 M maloc-devel  x86_64 1.5-22.el8 copr_base 194 k python3-numpy  x86_64 1:1.14.3-9.el8 appstream 3.7 M python3-sphinx  noarch 1:1.7.6-1.el8 powertools 1.7 M python36-devel  x86_64 3.6.8-2.module_el8.3.0+562+e162826a appstream 16 k swig  x86_64 3.0.12-19.module_el8.3.0+557+3d058e38 appstream 1.5 M texlive-collection-latexrecommended  noarch 7:20180414-19.el8 appstream 24 k zlib-devel  x86_64 1.2.11-16.2.el8_3 baseos 58 k Installing dependencies: ImageMagick-libs  x86_64 6.9.10.86-1.el8 epel 2.3 M LibRaw  x86_64 0.19.5-2.el8 appstream 316 k Lmod  x86_64 8.2.7-1.el8 epel 236 k OpenEXR-libs  x86_64 2.2.0-11.el8 appstream 675 k adobe-mappings-cmap  noarch 20171205-3.el8 appstream 2.1 M adobe-mappings-cmap-deprecated  noarch 20171205-3.el8 appstream 119 k adobe-mappings-pdf  noarch 20180407-1.el8 appstream 707 k atk  x86_64 2.28.1-1.el8 appstream 272 k avahi-libs  x86_64 0.7-19.el8 baseos 62 k cairo  x86_64 1.15.12-3.el8 appstream 721 k cmake-data  noarch 3.18.2-9.el8 copr_orrisroot_el8_devel_epel_8_basearch 1.6 M cmake-filesystem  x86_64 3.18.2-9.el8 copr_orrisroot_el8_devel_epel_8_basearch 44 k cmake-rpm-macros  noarch 3.18.2-9.el8 copr_orrisroot_el8_devel_epel_8_basearch 43 k cups-libs  x86_64 1:2.2.6-38.el8 baseos 433 k emacs-filesystem  noarch 1:26.1-5.el8 baseos 69 k fftw-libs-double  x86_64 3.3.5-11.el8 appstream 992 k fontawesome-fonts  noarch 4.7.0-4.el8 appstream 203 k fontawesome-fonts-web  noarch 4.7.0-4.el8 powertools 429 k fontconfig  x86_64 2.13.1-3.el8 baseos 275 k fontpackages-filesystem  noarch 1.44-22.el8 baseos 16 k freetype  x86_64 2.9.1-4.el8_3.1 baseos 394 k fribidi  x86_64 1.0.4-8.el8 appstream 89 k gd  x86_64 2.2.5-7.el8 appstream 144 k gdk-pixbuf2  x86_64 2.36.12-5.el8 baseos 467 k gdk-pixbuf2-modules  x86_64 2.36.12-5.el8 appstream 109 k ghostscript  x86_64 9.25-7.el8 appstream 82 k google-droid-sans-fonts  noarch 20120715-13.el8 appstream 2.5 M google-roboto-slab-fonts  noarch 1.100263-0.7.20150923git.el8 powertools 238 k graphite2  x86_64 1.3.10-10.el8 appstream 122 k groff-base  x86_64 1.22.3-18.el8 baseos 1.0 M gtk-update-icon-cache  x86_64 3.22.30-6.el8 appstream 32 k gtk2  x86_64 2.24.32-4.el8 appstream 3.4 M harfbuzz  x86_64 1.7.5-3.el8 appstream 295 k harfbuzz-icu  x86_64 1.7.5-3.el8 appstream 24 k hicolor-icon-theme  noarch 0.17-2.el8 appstream 49 k ilmbase  x86_64 2.2.0-11.el8 appstream 115 k jasper-libs  x86_64 2.0.14-4.el8 appstream 167 k jbig2dec-libs  x86_64 0.14-4.el8_2 appstream 67 k jbigkit-libs  x86_64 2.1-14.el8 appstream 55 k lato-fonts  noarch 2.015-5.el8 appstream 3.3 M lcms2  x86_64 2.9-2.el8 appstream 165 k libICE  x86_64 1.0.9-15.el8 appstream 74 k libSM  x86_64 1.2.3-1.el8 appstream 48 k libX11  x86_64 1.6.8-3.el8 appstream 611 k libX11-common  noarch 1.6.8-3.el8 appstream 158 k libXau  x86_64 1.0.9-3.el8 appstream 37 k libXaw  x86_64 1.0.13-10.el8 appstream 194 k libXcomposite  x86_64 0.4.4-14.el8 appstream 28 k libXcursor  x86_64 1.1.15-3.el8 appstream 36 k libXdamage  x86_64 1.1.4-14.el8 appstream 27 k libXext  x86_64 1.3.4-1.el8 appstream 45 k libXfixes  x86_64 5.0.3-7.el8 appstream 25 k libXft  x86_64 2.3.3-1.el8 appstream 67 k libXi  x86_64 1.7.10-1.el8 appstream 49 k libXinerama  x86_64 1.1.4-1.el8 appstream 16 k libXmu  x86_64 1.1.3-1.el8 appstream 75 k libXpm  x86_64 3.5.12-8.el8 appstream 58 k libXrandr  x86_64 1.5.2-1.el8 appstream 34 k libXrender  x86_64 0.9.10-7.el8 appstream 33 k libXt  x86_64 1.1.5-12.el8 appstream 186 k libXxf86misc  x86_64 1.0.4-1.el8 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7:20180414-19.el8 appstream 81 M texlive-courier  noarch 7:20180414-19.el8 appstream 523 k texlive-crop  noarch 7:20180414-19.el8 appstream 221 k texlive-csquotes  noarch 7:20180414-19.el8 appstream 351 k texlive-ctable  noarch 7:20180414-19.el8 appstream 716 k texlive-currfile  noarch 7:20180414-19.el8 appstream 195 k texlive-dvipdfmx  x86_64 7:20180414-19.el8 appstream 2.9 M texlive-dvips  x86_64 7:20180414-19.el8 appstream 1.4 M texlive-ec  noarch 7:20180414-19.el8 appstream 514 k texlive-enctex  noarch 7:20180414-19.el8 appstream 307 k texlive-enumitem  noarch 7:20180414-19.el8 appstream 374 k texlive-eso-pic  noarch 7:20180414-19.el8 appstream 276 k texlive-etex  noarch 7:20180414-19.el8 appstream 219 k texlive-etex-pkg  noarch 7:20180414-19.el8 appstream 30 k texlive-etoolbox  noarch 7:20180414-19.el8 appstream 262 k texlive-euenc  noarch 7:20180414-19.el8 appstream 172 k texlive-euler  noarch 7:20180414-19.el8 appstream 259 k texlive-euro  noarch 7:20180414-19.el8 appstream 223 k texlive-eurosym  noarch 7:20180414-19.el8 appstream 439 k texlive-extsizes  noarch 7:20180414-19.el8 appstream 229 k texlive-fancybox  noarch 7:20180414-19.el8 appstream 304 k texlive-fancyhdr  noarch 7:20180414-19.el8 appstream 422 k texlive-fancyref  noarch 7:20180414-19.el8 appstream 130 k texlive-fancyvrb  noarch 7:20180414-19.el8 appstream 476 k texlive-filecontents  noarch 7:20180414-19.el8 appstream 257 k texlive-filehook  noarch 7:20180414-19.el8 appstream 282 k texlive-finstrut  noarch 7:20180414-19.el8 appstream 199 k texlive-fix2col  noarch 7:20180414-19.el8 appstream 234 k texlive-float  noarch 7:20180414-19.el8 appstream 137 k texlive-fontspec  noarch 7:20180414-19.el8 appstream 913 k texlive-footmisc  noarch 7:20180414-19.el8 appstream 348 k texlive-fp  noarch 7:20180414-19.el8 appstream 52 k texlive-fpl  noarch 7:20180414-19.el8 appstream 391 k texlive-geometry  noarch 7:20180414-19.el8 appstream 221 k texlive-glyphlist  noarch 7:20180414-19.el8 appstream 50 k texlive-graphics  noarch 7:20180414-19.el8 appstream 2.0 M texlive-graphics-cfg  noarch 7:20180414-19.el8 appstream 26 k texlive-graphics-def  noarch 7:20180414-19.el8 appstream 35 k texlive-gsftopk  x86_64 7:20180414-19.el8 appstream 46 k texlive-helvetic  noarch 7:20180414-19.el8 appstream 629 k texlive-hyperref  noarch 7:20180414-19.el8 appstream 3.4 M texlive-hyph-utf8  noarch 7:20180414-19.el8 appstream 313 k texlive-hyphen-base  noarch 7:20180414-19.el8 appstream 47 k texlive-ifetex  noarch 7:20180414-19.el8 appstream 154 k texlive-ifluatex  noarch 7:20180414-19.el8 appstream 146 k texlive-iftex  noarch 7:20180414-19.el8 appstream 56 k texlive-ifxetex  noarch 7:20180414-19.el8 appstream 187 k texlive-index  noarch 7:20180414-19.el8 appstream 190 k texlive-jknapltx  noarch 7:20180414-19.el8 appstream 39 k texlive-kastrup  noarch 7:20180414-19.el8 appstream 161 k texlive-knuth-lib  noarch 7:20180414-19.el8 appstream 59 k texlive-knuth-local  noarch 7:20180414-19.el8 appstream 52 k 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texlive-pgf  noarch 7:20180414-19.el8 appstream 11 M texlive-plain  noarch 7:20180414-19.el8 appstream 125 k texlive-powerdot  noarch 7:20180414-19.el8 appstream 985 k texlive-psfrag  noarch 7:20180414-19.el8 appstream 97 k texlive-pslatex  noarch 7:20180414-19.el8 appstream 32 k texlive-psnfss  noarch 7:20180414-19.el8 appstream 529 k texlive-pspicture  noarch 7:20180414-19.el8 appstream 68 k texlive-pst-3d  noarch 7:20180414-19.el8 appstream 127 k texlive-pst-arrow  noarch 7:20180414-19.el8 appstream 155 k texlive-pst-blur  noarch 7:20180414-19.el8 appstream 105 k texlive-pst-coil  noarch 7:20180414-19.el8 appstream 276 k texlive-pst-eps  noarch 7:20180414-19.el8 appstream 106 k texlive-pst-fill  noarch 7:20180414-19.el8 appstream 1.1 M texlive-pst-grad  noarch 7:20180414-19.el8 appstream 240 k texlive-pst-math  noarch 7:20180414-19.el8 appstream 195 k texlive-pst-node  noarch 7:20180414-19.el8 appstream 436 k texlive-pst-plot  noarch 7:20180414-19.el8 appstream 1.2 M texlive-pst-slpe  noarch 7:20180414-19.el8 appstream 269 k texlive-pst-text  noarch 7:20180414-19.el8 appstream 141 k texlive-pst-tools  noarch 7:20180414-19.el8 appstream 119 k texlive-pst-tree  noarch 7:20180414-19.el8 appstream 182 k texlive-pstricks  noarch 7:20180414-19.el8 appstream 6.9 M texlive-pstricks-add  noarch 7:20180414-19.el8 appstream 4.9 M texlive-pxfonts  noarch 7:20180414-19.el8 appstream 923 k texlive-qstest  noarch 7:20180414-19.el8 appstream 244 k texlive-rcs  noarch 7:20180414-19.el8 appstream 157 k texlive-rsfs  noarch 7:20180414-19.el8 appstream 85 k texlive-sansmath  noarch 7:20180414-19.el8 appstream 205 k texlive-sauerj  noarch 7:20180414-19.el8 appstream 568 k texlive-section  noarch 7:20180414-19.el8 appstream 380 k texlive-seminar  noarch 7:20180414-19.el8 appstream 401 k texlive-sepnum  noarch 7:20180414-19.el8 appstream 372 k texlive-setspace  noarch 7:20180414-19.el8 appstream 32 k texlive-showexpl  noarch 7:20180414-19.el8 appstream 610 k texlive-soul  noarch 7:20180414-19.el8 appstream 334 k texlive-stmaryrd  noarch 7:20180414-19.el8 appstream 273 k texlive-subfig  noarch 7:20180414-19.el8 appstream 481 k texlive-symbol  noarch 7:20180414-19.el8 appstream 63 k texlive-tetex  noarch 7:20180414-19.el8 appstream 402 k texlive-tex  x86_64 7:20180414-19.el8 appstream 194 k texlive-tex-gyre  noarch 7:20180414-19.el8 appstream 12 M texlive-tex-gyre-math  noarch 7:20180414-19.el8 appstream 1.8 M texlive-tex-ini-files  noarch 7:20180414-19.el8 appstream 29 k texlive-texconfig  noarch 7:20180414-19.el8 appstream 39 k texlive-texlive-common-doc  noarch 7:20180414-19.el8 appstream 151 k texlive-texlive-docindex  noarch 7:20180414-19.el8 appstream 288 k texlive-texlive-en  noarch 7:20180414-19.el8 appstream 1.5 M texlive-texlive-msg-translations  noarch 7:20180414-19.el8 appstream 151 k texlive-texlive-scripts  noarch 7:20180414-19.el8 appstream 42 k texlive-texlive.infra  noarch 7:20180414-19.el8 appstream 280 k texlive-textcase  noarch 7:20180414-19.el8 appstream 179 k texlive-thumbpdf  noarch 7:20180414-19.el8 appstream 53 k texlive-times  noarch 7:20180414-19.el8 appstream 352 k texlive-tipa  noarch 7:20180414-19.el8 appstream 5.1 M texlive-tools  noarch 7:20180414-19.el8 appstream 5.1 M texlive-txfonts  noarch 7:20180414-19.el8 appstream 1.4 M texlive-type1cm  noarch 7:20180414-19.el8 appstream 344 k texlive-typehtml  noarch 7:20180414-19.el8 appstream 183 k texlive-ucs  noarch 7:20180414-19.el8 appstream 1.3 M texlive-underscore  noarch 7:20180414-19.el8 appstream 269 k texlive-unicode-data  noarch 7:20180414-19.el8 appstream 293 k texlive-unicode-math  noarch 7:20180414-19.el8 appstream 2.0 M texlive-updmap-map  noarch 7:20180414-19.el8 appstream 1.2 M texlive-url  noarch 7:20180414-19.el8 appstream 290 k texlive-utopia  noarch 7:20180414-19.el8 appstream 245 k texlive-varwidth  noarch 7:20180414-19.el8 appstream 54 k texlive-wasy  noarch 7:20180414-19.el8 appstream 195 k texlive-wasy2-ps  noarch 7:20180414-19.el8 appstream 240 k texlive-wasysym  noarch 7:20180414-19.el8 appstream 117 k texlive-xcolor  noarch 7:20180414-19.el8 appstream 703 k texlive-xdvi  x86_64 7:20180414-19.el8 appstream 362 k texlive-xetex  x86_64 7:20180414-19.el8 appstream 1.5 M texlive-xetexconfig  noarch 7:20180414-19.el8 appstream 24 k texlive-xkeyval  noarch 7:20180414-19.el8 appstream 422 k texlive-xunicode  noarch 7:20180414-19.el8 appstream 52 k texlive-zapfchan  noarch 7:20180414-19.el8 appstream 111 k texlive-zapfding  noarch 7:20180414-19.el8 appstream 73 k urw-base35-bookman-fonts  noarch 20170801-10.el8 appstream 857 k urw-base35-c059-fonts  noarch 20170801-10.el8 appstream 884 k urw-base35-d050000l-fonts  noarch 20170801-10.el8 appstream 79 k urw-base35-fonts  noarch 20170801-10.el8 appstream 12 k urw-base35-fonts-common  noarch 20170801-10.el8 appstream 23 k urw-base35-gothic-fonts  noarch 20170801-10.el8 appstream 654 k urw-base35-nimbus-mono-ps-fonts  noarch 20170801-10.el8 appstream 801 k urw-base35-nimbus-roman-fonts  noarch 20170801-10.el8 appstream 865 k urw-base35-nimbus-sans-fonts  noarch 20170801-10.el8 appstream 1.3 M urw-base35-p052-fonts  noarch 20170801-10.el8 appstream 982 k urw-base35-standard-symbols-ps-fonts  noarch 20170801-10.el8 appstream 44 k urw-base35-z003-fonts  noarch 20170801-10.el8 appstream 279 k vim-filesystem  noarch 2:8.0.1763-15.el8 appstream 48 k xorg-x11-font-utils  x86_64 1:7.5-40.el8 appstream 103 k xorg-x11-fonts-ISO8859-1-100dpi  noarch 7.5-19.el8 appstream 1.1 M xorg-x11-server-utils  x86_64 7.7-27.el8 appstream 198 k zziplib  x86_64 0.13.68-8.el8 appstream 91 k Installing weak dependencies: ImageMagick  x86_64 6.9.10.86-1.el8 epel 195 k perl-IO-Socket-IP  noarch 0.39-5.el8 appstream 47 k perl-IO-Socket-SSL  noarch 2.066-4.module_el8.3.0+410+ff426aa3 appstream 298 k perl-Mozilla-CA  noarch 20160104-7.module_el8.3.0+416+dee7bcef appstream 15 k Enabling module streams: perl 5.26 perl-IO-Socket-SSL 2.066 perl-libwww-perl 6.34 python36 3.6 swig 3.0 Transaction Summary ====================================================================================================================================== Install 424 Packages Total download size: 470 M Installed size: 1.0 G Downloading Packages: (1/424): maloc-1.5-22.el8.x86_64.rpm 2.1 MB/s | 97 kB 00:00 (2/424): maloc-devel-1.5-22.el8.x86_64.rpm 3.3 MB/s | 194 kB 00:00 (3/424): cmake-filesystem-3.18.2-9.el8.x86_64.r 640 kB/s | 44 kB 00:00 (4/424): cmake-data-3.18.2-9.el8.noarch.rpm 16 MB/s | 1.6 MB 00:00 (5/424): libuv-1.40.0-1.el8.x86_64.rpm 23 MB/s | 154 kB 00:00 (6/424): avahi-libs-0.7-19.el8.x86_64.rpm 8.1 MB/s | 62 kB 00:00 (7/424): cmake-rpm-macros-3.18.2-9.el8.noarch.r 1.0 MB/s | 43 kB 00:00 (8/424): cups-libs-2.2.6-38.el8.x86_64.rpm 39 MB/s | 433 kB 00:00 (9/424): fontconfig-2.13.1-3.el8.x86_64.rpm 34 MB/s | 275 kB 00:00 (10/424): fontpackages-filesystem-1.44-22.el8.n 1.3 MB/s | 16 kB 00:00 (11/424): freetype-2.9.1-4.el8_3.1.x86_64.rpm 25 MB/s | 394 kB 00:00 (12/424): emacs-filesystem-26.1-5.el8.noarch.rp 1.6 MB/s | 69 kB 00:00 (13/424): gdk-pixbuf2-2.36.12-5.el8.x86_64.rpm 60 MB/s | 467 kB 00:00 (14/424): libgfortran-8.3.1-5.1.el8.x86_64.rpm 54 MB/s | 639 kB 00:00 (15/424): groff-base-1.22.3-18.el8.x86_64.rpm 36 MB/s | 1.0 MB 00:00 (16/424): libpng-1.6.34-5.el8.x86_64.rpm 23 MB/s | 126 kB 00:00 (17/424): libquadmath-8.3.1-5.1.el8.x86_64.rpm 12 MB/s | 169 kB 00:00 (18/424): perl-Carp-1.42-396.el8.noarch.rpm 3.8 MB/s | 30 kB 00:00 (19/424): perl-Data-Dumper-2.167-399.el8.x86_64 15 MB/s | 58 kB 00:00 (20/424): perl-Encode-2.97-3.el8.x86_64.rpm 59 MB/s | 1.5 MB 00:00 (21/424): perl-Errno-1.28-416.el8.x86_64.rpm 20 MB/s | 76 kB 00:00 (22/424): perl-Exporter-5.72-396.el8.noarch.rpm 2.4 MB/s | 34 kB 00:00 (23/424): perl-File-Path-2.15-2.el8.noarch.rpm 8.7 MB/s | 38 kB 00:00 (24/424): libicu-60.3-2.el8_1.x86_64.rpm 68 MB/s | 8.8 MB 00:00 (25/424): perl-File-Temp-0.230.600-1.el8.noarch 1.6 MB/s | 63 kB 00:00 (26/424): perl-HTTP-Tiny-0.074-1.el8.noarch.rpm 18 MB/s | 58 kB 00:00 (27/424): perl-Getopt-Long-2.50-4.el8.noarch.rp 5.7 MB/s | 63 kB 00:00 (28/424): perl-IO-1.38-416.el8.x86_64.rpm 18 MB/s | 141 kB 00:00 (29/424): perl-MIME-Base64-3.15-396.el8.x86_64. 8.1 MB/s | 31 kB 00:00 (30/424): perl-PathTools-3.74-1.el8.x86_64.rpm 21 MB/s | 90 kB 00:00 (31/424): perl-Pod-Escapes-1.07-395.el8.noarch. 4.4 MB/s | 20 kB 00:00 (32/424): perl-Pod-Perldoc-3.28-396.el8.noarch. 17 MB/s | 86 kB 00:00 (33/424): perl-Pod-Usage-1.69-395.el8.noarch.rp 11 MB/s | 34 kB 00:00 (34/424): perl-Pod-Simple-3.35-395.el8.noarch.r 28 MB/s | 213 kB 00:00 (35/424): perl-Scalar-List-Utils-1.49-2.el8.x86 17 MB/s | 68 kB 00:00 (36/424): perl-Socket-2.027-3.el8.x86_64.rpm 10 MB/s | 59 kB 00:00 (37/424): perl-Storable-3.11-3.el8.x86_64.rpm 12 MB/s | 98 kB 00:00 (38/424): perl-Term-ANSIColor-4.06-396.el8.noar 10 MB/s | 46 kB 00:00 (39/424): perl-Term-Cap-1.17-395.el8.noarch.rpm 7.8 MB/s | 23 kB 00:00 (40/424): perl-Text-ParseWords-3.30-395.el8.noa 5.3 MB/s | 18 kB 00:00 (41/424): perl-Time-Local-1.280-1.el8.noarch.rp 12 MB/s | 34 kB 00:00 (42/424): perl-Unicode-Normalize-1.25-396.el8.x 13 MB/s | 82 kB 00:00 (43/424): perl-constant-1.33-396.el8.noarch.rpm 9.9 MB/s | 25 kB 00:00 (44/424): perl-Text-Tabs+Wrap-2013.0523-395.el8 1.5 MB/s | 24 kB 00:00 (45/424): perl-libs-5.26.3-416.el8.x86_64.rpm 30 MB/s | 1.6 MB 00:00 (46/424): perl-macros-5.26.3-416.el8.x86_64.rpm 10 MB/s | 72 kB 00:00 (47/424): perl-parent-0.237-1.el8.noarch.rpm 4.2 MB/s | 20 kB 00:00 (48/424): cmake-3.18.2-9.el8.x86_64.rpm 19 MB/s | 9.8 MB 00:00 (49/424): perl-podlators-4.11-1.el8.noarch.rpm 2.8 MB/s | 118 kB 00:00 (50/424): perl-threads-2.21-2.el8.x86_64.rpm 6.5 MB/s | 61 kB 00:00 (51/424): perl-threads-shared-1.58-2.el8.x86_64 3.0 MB/s | 48 kB 00:00 (52/424): python3-chardet-3.0.4-7.el8.noarch.rp 13 MB/s | 195 kB 00:00 (53/424): python3-idna-2.5-5.el8.noarch.rpm 11 MB/s | 97 kB 00:00 (54/424): python3-pyparsing-2.1.10-7.el8.noarch 19 MB/s | 142 kB 00:00 (55/424): python3-requests-2.20.0-2.1.el8_1.noa 11 MB/s | 123 kB 00:00 (56/424): python3-setuptools-39.2.0-6.el8.noarc 12 MB/s | 163 kB 00:00 (57/424): python3-pysocks-1.6.8-3.el8.noarch.rp 971 kB/s | 34 kB 00:00 (58/424): python3-six-1.11.0-8.el8.noarch.rpm 7.3 MB/s | 38 kB 00:00 (59/424): python3-urllib3-1.24.2-4.el8.noarch.r 15 MB/s | 176 kB 00:00 (60/424): tcl-8.6.8-2.el8.x86_64.rpm 58 MB/s | 1.1 MB 00:00 (61/424): zlib-devel-1.2.11-16.2.el8_3.x86_64.r 3.4 MB/s | 58 kB 00:00 (62/424): LibRaw-0.19.5-2.el8.x86_64.rpm 18 MB/s | 316 kB 00:00 (63/424): perl-interpreter-5.26.3-416.el8.x86_6 26 MB/s | 6.3 MB 00:00 (64/424): adobe-mappings-cmap-deprecated-201712 20 MB/s | 119 kB 00:00 (65/424): adobe-mappings-cmap-20171205-3.el8.no 35 MB/s | 2.1 MB 00:00 (66/424): adobe-mappings-pdf-20180407-1.el8.noa 36 MB/s | 707 kB 00:00 (67/424): atk-2.28.1-1.el8.x86_64.rpm 31 MB/s | 272 kB 00:00 (68/424): OpenEXR-libs-2.2.0-11.el8.x86_64.rpm 7.7 MB/s | 675 kB 00:00 (69/424): cairo-1.15.12-3.el8.x86_64.rpm 48 MB/s | 721 kB 00:00 (70/424): fontawesome-fonts-4.7.0-4.el8.noarch. 21 MB/s | 203 kB 00:00 (71/424): fribidi-1.0.4-8.el8.x86_64.rpm 11 MB/s | 89 kB 00:00 (72/424): gd-2.2.5-7.el8.x86_64.rpm 16 MB/s | 144 kB 00:00 (73/424): gdk-pixbuf2-modules-2.36.12-5.el8.x86 12 MB/s | 109 kB 00:00 (74/424): ghostscript-9.25-7.el8.x86_64.rpm 20 MB/s | 82 kB 00:00 (75/424): graphite2-1.3.10-10.el8.x86_64.rpm 34 MB/s | 122 kB 00:00 (76/424): fftw-libs-double-3.3.5-11.el8.x86_64. 17 MB/s | 992 kB 00:00 (77/424): google-droid-sans-fonts-20120715-13.e 57 MB/s | 2.5 MB 00:00 (78/424): gtk-update-icon-cache-3.22.30-6.el8.x 1.8 MB/s | 32 kB 00:00 (79/424): harfbuzz-1.7.5-3.el8.x86_64.rpm 26 MB/s | 295 kB 00:00 (80/424): harfbuzz-icu-1.7.5-3.el8.x86_64.rpm 1.6 MB/s | 24 kB 00:00 (81/424): hicolor-icon-theme-0.17-2.el8.noarch. 5.2 MB/s | 49 kB 00:00 (82/424): ilmbase-2.2.0-11.el8.x86_64.rpm 5.3 MB/s | 115 kB 00:00 (83/424): graphviz-2.40.1-40.el8.x86_64.rpm 16 MB/s | 1.7 MB 00:00 (84/424): jasper-libs-2.0.14-4.el8.x86_64.rpm 14 MB/s | 167 kB 00:00 (85/424): jbig2dec-libs-0.14-4.el8_2.x86_64.rpm 17 MB/s | 67 kB 00:00 (86/424): jbigkit-libs-2.1-14.el8.x86_64.rpm 5.0 MB/s | 55 kB 00:00 (87/424): lcms2-2.9-2.el8.x86_64.rpm 6.5 MB/s | 165 kB 00:00 (88/424): libICE-1.0.9-15.el8.x86_64.rpm 18 MB/s | 74 kB 00:00 (89/424): libSM-1.2.3-1.el8.x86_64.rpm 16 MB/s | 48 kB 00:00 (90/424): libX11-1.6.8-3.el8.x86_64.rpm 49 MB/s | 611 kB 00:00 (91/424): libX11-common-1.6.8-3.el8.noarch.rpm 28 MB/s | 158 kB 00:00 (92/424): libXau-1.0.9-3.el8.x86_64.rpm 13 MB/s | 37 kB 00:00 (93/424): lato-fonts-2.015-5.el8.noarch.rpm 42 MB/s | 3.3 MB 00:00 (94/424): libXaw-1.0.13-10.el8.x86_64.rpm 12 MB/s | 194 kB 00:00 (95/424): libXcomposite-0.4.4-14.el8.x86_64.rpm 5.4 MB/s | 28 kB 00:00 (96/424): libXcursor-1.1.15-3.el8.x86_64.rpm 9.6 MB/s | 36 kB 00:00 (97/424): libXdamage-1.1.4-14.el8.x86_64.rpm 6.2 MB/s | 27 kB 00:00 (98/424): libXext-1.3.4-1.el8.x86_64.rpm 11 MB/s | 45 kB 00:00 (99/424): libXft-2.3.3-1.el8.x86_64.rpm 19 MB/s | 67 kB 00:00 (100/424): libXfixes-5.0.3-7.el8.x86_64.rpm 3.9 MB/s | 25 kB 00:00 (101/424): libXinerama-1.1.4-1.el8.x86_64.rpm 7.0 MB/s | 16 kB 00:00 (102/424): libXi-1.7.10-1.el8.x86_64.rpm 8.3 MB/s | 49 kB 00:00 (103/424): libXmu-1.1.3-1.el8.x86_64.rpm 14 MB/s | 75 kB 00:00 (104/424): libXrandr-1.5.2-1.el8.x86_64.rpm 8.3 MB/s | 34 kB 00:00 (105/424): libXpm-3.5.12-8.el8.x86_64.rpm 6.3 MB/s | 58 kB 00:00 (106/424): libXrender-0.9.10-7.el8.x86_64.rpm 9.3 MB/s | 33 kB 00:00 (107/424): libXt-1.1.5-12.el8.x86_64.rpm 36 MB/s | 186 kB 00:00 (108/424): libXxf86misc-1.0.4-1.el8.x86_64.rpm 5.2 MB/s | 23 kB 00:00 (109/424): libdatrie-0.2.9-7.el8.x86_64.rpm 12 MB/s | 33 kB 00:00 (110/424): libXxf86vm-1.1.4-9.el8.x86_64.rpm 3.2 MB/s | 19 kB 00:00 (111/424): libfontenc-1.1.3-8.el8.x86_64.rpm 3.6 MB/s | 37 kB 00:00 (112/424): libidn-1.34-5.el8.x86_64.rpm 47 MB/s | 239 kB 00:00 (113/424): 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Verifying : python3-sphinx-1:1.7.6-1.el8.noarch 415/424 Verifying : python3-sphinx-theme-alabaster-0.7.9-7.el8.noarc 416/424 Verifying : python3-sphinx_rtd_theme-0.3.1-3.el8.noarch 417/424 Verifying : python3-sphinxcontrib-websupport-1.0.1-10.201803 418/424 Verifying : python3-whoosh-2.7.4-9.el8.noarch 419/424 Verifying : ImageMagick-6.9.10.86-1.el8.x86_64 420/424 Verifying : ImageMagick-libs-6.9.10.86-1.el8.x86_64 421/424 Verifying : Lmod-8.2.7-1.el8.x86_64 422/424 Verifying : libraqm-0.7.0-4.el8.x86_64 423/424 Verifying : lua-term-0.07-9.el8.x86_64 424/424 Installed: ImageMagick-6.9.10.86-1.el8.x86_64 ImageMagick-libs-6.9.10.86-1.el8.x86_64 LibRaw-0.19.5-2.el8.x86_64 Lmod-8.2.7-1.el8.x86_64 OpenEXR-libs-2.2.0-11.el8.x86_64 adobe-mappings-cmap-20171205-3.el8.noarch adobe-mappings-cmap-deprecated-20171205-3.el8.noarch adobe-mappings-pdf-20180407-1.el8.noarch atk-2.28.1-1.el8.x86_64 avahi-libs-0.7-19.el8.x86_64 cairo-1.15.12-3.el8.x86_64 cmake-3.18.2-9.el8.x86_64 cmake-data-3.18.2-9.el8.noarch cmake-filesystem-3.18.2-9.el8.x86_64 cmake-rpm-macros-3.18.2-9.el8.noarch cups-libs-1:2.2.6-38.el8.x86_64 doxygen-1:1.8.14-12.el8.x86_64 emacs-filesystem-1:26.1-5.el8.noarch fftw-libs-double-3.3.5-11.el8.x86_64 fontawesome-fonts-4.7.0-4.el8.noarch fontawesome-fonts-web-4.7.0-4.el8.noarch fontconfig-2.13.1-3.el8.x86_64 fontpackages-filesystem-1.44-22.el8.noarch freetype-2.9.1-4.el8_3.1.x86_64 fribidi-1.0.4-8.el8.x86_64 gd-2.2.5-7.el8.x86_64 gdk-pixbuf2-2.36.12-5.el8.x86_64 gdk-pixbuf2-modules-2.36.12-5.el8.x86_64 ghostscript-9.25-7.el8.x86_64 google-droid-sans-fonts-20120715-13.el8.noarch google-roboto-slab-fonts-1.100263-0.7.20150923git.el8.noarch graphite2-1.3.10-10.el8.x86_64 graphviz-2.40.1-40.el8.x86_64 groff-base-1.22.3-18.el8.x86_64 gtk-update-icon-cache-3.22.30-6.el8.x86_64 gtk2-2.24.32-4.el8.x86_64 harfbuzz-1.7.5-3.el8.x86_64 harfbuzz-icu-1.7.5-3.el8.x86_64 hicolor-icon-theme-0.17-2.el8.noarch ilmbase-2.2.0-11.el8.x86_64 jasper-libs-2.0.14-4.el8.x86_64 jbig2dec-libs-0.14-4.el8_2.x86_64 jbigkit-libs-2.1-14.el8.x86_64 lato-fonts-2.015-5.el8.noarch lcms2-2.9-2.el8.x86_64 libICE-1.0.9-15.el8.x86_64 libSM-1.2.3-1.el8.x86_64 libX11-1.6.8-3.el8.x86_64 libX11-common-1.6.8-3.el8.noarch libXau-1.0.9-3.el8.x86_64 libXaw-1.0.13-10.el8.x86_64 libXcomposite-0.4.4-14.el8.x86_64 libXcursor-1.1.15-3.el8.x86_64 libXdamage-1.1.4-14.el8.x86_64 libXext-1.3.4-1.el8.x86_64 libXfixes-5.0.3-7.el8.x86_64 libXft-2.3.3-1.el8.x86_64 libXi-1.7.10-1.el8.x86_64 libXinerama-1.1.4-1.el8.x86_64 libXmu-1.1.3-1.el8.x86_64 libXpm-3.5.12-8.el8.x86_64 libXrandr-1.5.2-1.el8.x86_64 libXrender-0.9.10-7.el8.x86_64 libXt-1.1.5-12.el8.x86_64 libXxf86misc-1.0.4-1.el8.x86_64 libXxf86vm-1.1.4-9.el8.x86_64 libdatrie-0.2.9-7.el8.x86_64 libfontenc-1.1.3-8.el8.x86_64 libgfortran-8.3.1-5.1.el8.x86_64 libgs-9.25-7.el8.x86_64 libicu-60.3-2.el8_1.x86_64 libidn-1.34-5.el8.x86_64 libijs-0.35-5.el8.x86_64 libjpeg-turbo-1.5.3-10.el8.x86_64 libmcpp-2.7.2-20.el8.x86_64 libpaper-1.1.24-22.el8.x86_64 libpng-2:1.6.34-5.el8.x86_64 libquadmath-8.3.1-5.1.el8.x86_64 libraqm-0.7.0-4.el8.x86_64 librsvg2-2.42.7-4.el8.x86_64 libthai-0.1.27-2.el8.x86_64 libtiff-4.0.9-18.el8.x86_64 libuv-1:1.40.0-1.el8.x86_64 libwebp-1.0.0-1.el8.x86_64 libwmf-lite-0.2.9-8.el8_0.x86_64 libxcb-1.13.1-1.el8.x86_64 lua-5.3.4-11.el8.x86_64 lua-filesystem-1.6.3-7.el8.x86_64 lua-json-1.3.2-9.el8.noarch lua-lpeg-1.0.1-6.el8.x86_64 lua-posix-33.3.1-9.el8.x86_64 lua-term-0.07-9.el8.x86_64 maloc-1.5-22.el8.x86_64 maloc-devel-1.5-22.el8.x86_64 mcpp-2.7.2-20.el8.x86_64 nspr-4.25.0-2.el8_2.x86_64 nss-3.53.1-17.el8_3.x86_64 nss-softokn-3.53.1-17.el8_3.x86_64 nss-softokn-freebl-3.53.1-17.el8_3.x86_64 nss-sysinit-3.53.1-17.el8_3.x86_64 nss-util-3.53.1-17.el8_3.x86_64 openblas-0.3.3-5.el8.x86_64 openblas-threads-0.3.3-5.el8.x86_64 openjpeg2-2.3.1-6.el8.x86_64 pango-1.42.4-6.el8.x86_64 perl-Carp-1.42-396.el8.noarch perl-Data-Dumper-2.167-399.el8.x86_64 perl-Digest-1.17-395.el8.noarch perl-Digest-MD5-2.55-396.el8.x86_64 perl-Encode-4:2.97-3.el8.x86_64 perl-Errno-1.28-416.el8.x86_64 perl-Exporter-5.72-396.el8.noarch perl-File-Path-2.15-2.el8.noarch perl-File-Temp-0.230.600-1.el8.noarch perl-Filter-2:1.58-2.el8.x86_64 perl-Getopt-Long-1:2.50-4.el8.noarch perl-HTTP-Tiny-0.074-1.el8.noarch perl-IO-1.38-416.el8.x86_64 perl-IO-Socket-IP-0.39-5.el8.noarch perl-IO-Socket-SSL-2.066-4.module_el8.3.0+410+ff426aa3.noarch perl-MIME-Base64-3.15-396.el8.x86_64 perl-Mozilla-CA-20160104-7.module_el8.3.0+416+dee7bcef.noarch perl-Net-SSLeay-1.88-1.module_el8.3.0+410+ff426aa3.x86_64 perl-PathTools-3.74-1.el8.x86_64 perl-Pod-Escapes-1:1.07-395.el8.noarch perl-Pod-Perldoc-3.28-396.el8.noarch perl-Pod-Simple-1:3.35-395.el8.noarch perl-Pod-Usage-4:1.69-395.el8.noarch perl-Scalar-List-Utils-3:1.49-2.el8.x86_64 perl-SelfLoader-1.23-416.el8.noarch perl-Socket-4:2.027-3.el8.x86_64 perl-Storable-1:3.11-3.el8.x86_64 perl-Term-ANSIColor-4.06-396.el8.noarch perl-Term-Cap-1.17-395.el8.noarch perl-Text-ParseWords-3.30-395.el8.noarch perl-Text-Tabs+Wrap-2013.0523-395.el8.noarch perl-Text-Unidecode-1.30-5.el8.noarch perl-Time-Local-1:1.280-1.el8.noarch perl-Tk-804.034-2.el8.x86_64 perl-URI-1.73-3.el8.noarch perl-Unicode-Normalize-1.25-396.el8.x86_64 perl-XML-Parser-2.44-11.el8.x86_64 perl-XML-XPath-1.42-3.el8.noarch perl-constant-1.33-396.el8.noarch perl-encoding-4:2.22-3.el8.x86_64 perl-interpreter-4:5.26.3-416.el8.x86_64 perl-libnet-3.11-3.el8.noarch perl-libs-4:5.26.3-416.el8.x86_64 perl-macros-4:5.26.3-416.el8.x86_64 perl-open-1.11-416.el8.noarch perl-parent-1:0.237-1.el8.noarch perl-podlators-4.11-1.el8.noarch perl-threads-1:2.21-2.el8.x86_64 perl-threads-shared-1.58-2.el8.x86_64 pixman-0.38.4-1.el8.x86_64 platform-python-devel-3.6.8-31.el8.x86_64 poppler-0.66.0-27.el8.x86_64 poppler-data-0.4.9-1.el8.noarch python-sphinx-locale-1:1.7.6-1.el8.noarch python3-babel-2.5.1-5.el8.noarch python3-chardet-3.0.4-7.el8.noarch python3-docutils-0.14-12.module_el8.3.0+562+e162826a.noarch python3-idna-2.5-5.el8.noarch python3-imagesize-1.0.0-2.el8.noarch python3-jinja2-2.10.1-2.el8_0.noarch python3-markupsafe-0.23-19.el8.x86_64 python3-mock-2.0.0-11.el8.noarch python3-numpy-1:1.14.3-9.el8.x86_64 python3-packaging-16.8-9.el8.noarch python3-pip-9.0.3-18.el8.noarch python3-pygments-2.2.0-20.module_el8.3.0+562+e162826a.noarch python3-pyparsing-2.1.10-7.el8.noarch python3-pysocks-1.6.8-3.el8.noarch python3-pytz-2017.2-9.el8.noarch python3-requests-2.20.0-2.1.el8_1.noarch python3-rpm-generators-5-6.el8.noarch python3-setuptools-39.2.0-6.el8.noarch python3-six-1.11.0-8.el8.noarch python3-snowballstemmer-1.2.1-6.el8.noarch python3-sphinx-1:1.7.6-1.el8.noarch python3-sphinx-theme-alabaster-0.7.9-7.el8.noarch python3-sphinx_rtd_theme-0.3.1-3.el8.noarch python3-sphinxcontrib-websupport-1.0.1-10.20180316git.el8.noarch python3-sqlalchemy-1.3.2-2.module_el8.3.0+562+e162826a.x86_64 python3-urllib3-1.24.2-4.el8.noarch python3-whoosh-2.7.4-9.el8.noarch python36-3.6.8-2.module_el8.3.0+562+e162826a.x86_64 python36-devel-3.6.8-2.module_el8.3.0+562+e162826a.x86_64 python36-rpm-macros-3.6.8-2.module_el8.3.0+562+e162826a.noarch swig-3.0.12-19.module_el8.3.0+557+3d058e38.x86_64 tcl-1:8.6.8-2.el8.x86_64 teckit-2.5.8-1.el8.x86_64 texlive-ae-7:20180414-19.el8.noarch texlive-algorithms-7:20180414-19.el8.noarch texlive-amscls-7:20180414-19.el8.noarch texlive-amsfonts-7:20180414-19.el8.noarch texlive-amsmath-7:20180414-19.el8.noarch texlive-anysize-7:20180414-19.el8.noarch texlive-attachfile-7:20180414-19.el8.noarch texlive-avantgar-7:20180414-19.el8.noarch texlive-babel-7:20180414-19.el8.noarch texlive-babel-english-7:20180414-19.el8.noarch texlive-babelbib-7:20180414-19.el8.noarch texlive-base-7:20180414-19.el8.noarch texlive-beamer-7:20180414-19.el8.noarch texlive-bera-7:20180414-19.el8.noarch texlive-beton-7:20180414-19.el8.noarch texlive-bibtex-7:20180414-19.el8.x86_64 texlive-bookman-7:20180414-19.el8.noarch texlive-booktabs-7:20180414-19.el8.noarch texlive-breakurl-7:20180414-19.el8.noarch texlive-breqn-7:20180414-19.el8.noarch texlive-caption-7:20180414-19.el8.noarch texlive-carlisle-7:20180414-19.el8.noarch texlive-charter-7:20180414-19.el8.noarch texlive-chngcntr-7:20180414-19.el8.noarch texlive-cite-7:20180414-19.el8.noarch texlive-cm-7:20180414-19.el8.noarch texlive-cm-super-7:20180414-19.el8.noarch texlive-cmap-7:20180414-19.el8.noarch texlive-cmextra-7:20180414-19.el8.noarch texlive-collection-basic-7:20180414-19.el8.noarch texlive-collection-fontsrecommended-7:20180414-19.el8.noarch texlive-collection-latex-7:20180414-19.el8.noarch texlive-collection-latexrecommended-7:20180414-19.el8.noarch texlive-colortbl-7:20180414-19.el8.noarch texlive-context-7:20180414-19.el8.noarch texlive-courier-7:20180414-19.el8.noarch texlive-crop-7:20180414-19.el8.noarch texlive-csquotes-7:20180414-19.el8.noarch texlive-ctable-7:20180414-19.el8.noarch texlive-currfile-7:20180414-19.el8.noarch texlive-dvipdfmx-7:20180414-19.el8.x86_64 texlive-dvips-7:20180414-19.el8.x86_64 texlive-ec-7:20180414-19.el8.noarch texlive-enctex-7:20180414-19.el8.noarch texlive-enumitem-7:20180414-19.el8.noarch texlive-eso-pic-7:20180414-19.el8.noarch texlive-etex-7:20180414-19.el8.noarch texlive-etex-pkg-7:20180414-19.el8.noarch texlive-etoolbox-7:20180414-19.el8.noarch texlive-euenc-7:20180414-19.el8.noarch texlive-euler-7:20180414-19.el8.noarch texlive-euro-7:20180414-19.el8.noarch texlive-eurosym-7:20180414-19.el8.noarch texlive-extsizes-7:20180414-19.el8.noarch texlive-fancybox-7:20180414-19.el8.noarch texlive-fancyhdr-7:20180414-19.el8.noarch texlive-fancyref-7:20180414-19.el8.noarch texlive-fancyvrb-7:20180414-19.el8.noarch texlive-filecontents-7:20180414-19.el8.noarch texlive-filehook-7:20180414-19.el8.noarch texlive-finstrut-7:20180414-19.el8.noarch texlive-fix2col-7:20180414-19.el8.noarch texlive-float-7:20180414-19.el8.noarch texlive-fontspec-7:20180414-19.el8.noarch texlive-footmisc-7:20180414-19.el8.noarch texlive-fp-7:20180414-19.el8.noarch texlive-fpl-7:20180414-19.el8.noarch texlive-geometry-7:20180414-19.el8.noarch texlive-glyphlist-7:20180414-19.el8.noarch texlive-graphics-7:20180414-19.el8.noarch texlive-graphics-cfg-7:20180414-19.el8.noarch texlive-graphics-def-7:20180414-19.el8.noarch texlive-gsftopk-7:20180414-19.el8.x86_64 texlive-helvetic-7:20180414-19.el8.noarch texlive-hyperref-7:20180414-19.el8.noarch texlive-hyph-utf8-7:20180414-19.el8.noarch texlive-hyphen-base-7:20180414-19.el8.noarch texlive-ifetex-7:20180414-19.el8.noarch texlive-ifluatex-7:20180414-19.el8.noarch texlive-iftex-7:20180414-19.el8.noarch texlive-ifxetex-7:20180414-19.el8.noarch texlive-index-7:20180414-19.el8.noarch texlive-jknapltx-7:20180414-19.el8.noarch texlive-kastrup-7:20180414-19.el8.noarch texlive-knuth-lib-7:20180414-19.el8.noarch texlive-knuth-local-7:20180414-19.el8.noarch texlive-koma-script-7:20180414-19.el8.noarch texlive-kpathsea-7:20180414-19.el8.x86_64 texlive-l3experimental-7:20180414-19.el8.noarch texlive-l3kernel-7:20180414-19.el8.noarch texlive-l3packages-7:20180414-19.el8.noarch texlive-latex-7:20180414-19.el8.noarch texlive-latex-fonts-7:20180414-19.el8.noarch texlive-latexconfig-7:20180414-19.el8.noarch texlive-lib-7:20180414-19.el8.x86_64 texlive-lineno-7:20180414-19.el8.noarch texlive-listings-7:20180414-19.el8.noarch texlive-lm-7:20180414-19.el8.noarch texlive-lm-math-7:20180414-19.el8.noarch texlive-ltabptch-7:20180414-19.el8.noarch texlive-ltxmisc-7:20180414-19.el8.noarch texlive-lua-alt-getopt-7:20180414-19.el8.noarch texlive-lualatex-math-7:20180414-19.el8.noarch texlive-lualibs-7:20180414-19.el8.noarch texlive-luaotfload-7:20180414-19.el8.noarch texlive-luatex-7:20180414-19.el8.x86_64 texlive-luatexbase-7:20180414-19.el8.noarch texlive-makeindex-7:20180414-19.el8.x86_64 texlive-manfnt-font-7:20180414-19.el8.noarch texlive-marginnote-7:20180414-19.el8.noarch texlive-marvosym-7:20180414-19.el8.noarch texlive-mathpazo-7:20180414-19.el8.noarch texlive-mathtools-7:20180414-19.el8.noarch texlive-mdwtools-7:20180414-19.el8.noarch texlive-memoir-7:20180414-19.el8.noarch texlive-metafont-7:20180414-19.el8.x86_64 texlive-metalogo-7:20180414-19.el8.noarch texlive-metapost-7:20180414-19.el8.x86_64 texlive-mflogo-7:20180414-19.el8.noarch texlive-mflogo-font-7:20180414-19.el8.noarch texlive-mfnfss-7:20180414-19.el8.noarch texlive-mfware-7:20180414-19.el8.x86_64 texlive-microtype-7:20180414-19.el8.noarch texlive-mparhack-7:20180414-19.el8.noarch texlive-mptopdf-7:20180414-19.el8.noarch texlive-ms-7:20180414-19.el8.noarch texlive-multido-7:20180414-19.el8.noarch texlive-natbib-7:20180414-19.el8.noarch texlive-ncntrsbk-7:20180414-19.el8.noarch texlive-ntgclass-7:20180414-19.el8.noarch texlive-oberdiek-7:20180414-19.el8.noarch texlive-palatino-7:20180414-19.el8.noarch texlive-paralist-7:20180414-19.el8.noarch texlive-parallel-7:20180414-19.el8.noarch texlive-parskip-7:20180414-19.el8.noarch texlive-pdfpages-7:20180414-19.el8.noarch texlive-pdftex-7:20180414-19.el8.x86_64 texlive-pgf-7:20180414-19.el8.noarch texlive-plain-7:20180414-19.el8.noarch texlive-powerdot-7:20180414-19.el8.noarch texlive-psfrag-7:20180414-19.el8.noarch texlive-pslatex-7:20180414-19.el8.noarch texlive-psnfss-7:20180414-19.el8.noarch texlive-pspicture-7:20180414-19.el8.noarch texlive-pst-3d-7:20180414-19.el8.noarch texlive-pst-arrow-7:20180414-19.el8.noarch texlive-pst-blur-7:20180414-19.el8.noarch texlive-pst-coil-7:20180414-19.el8.noarch texlive-pst-eps-7:20180414-19.el8.noarch texlive-pst-fill-7:20180414-19.el8.noarch texlive-pst-grad-7:20180414-19.el8.noarch texlive-pst-math-7:20180414-19.el8.noarch texlive-pst-node-7:20180414-19.el8.noarch texlive-pst-plot-7:20180414-19.el8.noarch texlive-pst-slpe-7:20180414-19.el8.noarch texlive-pst-text-7:20180414-19.el8.noarch texlive-pst-tools-7:20180414-19.el8.noarch texlive-pst-tree-7:20180414-19.el8.noarch texlive-pstricks-7:20180414-19.el8.noarch texlive-pstricks-add-7:20180414-19.el8.noarch texlive-pxfonts-7:20180414-19.el8.noarch texlive-qstest-7:20180414-19.el8.noarch texlive-rcs-7:20180414-19.el8.noarch texlive-rsfs-7:20180414-19.el8.noarch texlive-sansmath-7:20180414-19.el8.noarch texlive-sauerj-7:20180414-19.el8.noarch texlive-section-7:20180414-19.el8.noarch texlive-seminar-7:20180414-19.el8.noarch texlive-sepnum-7:20180414-19.el8.noarch texlive-setspace-7:20180414-19.el8.noarch texlive-showexpl-7:20180414-19.el8.noarch texlive-soul-7:20180414-19.el8.noarch texlive-stmaryrd-7:20180414-19.el8.noarch texlive-subfig-7:20180414-19.el8.noarch texlive-symbol-7:20180414-19.el8.noarch texlive-tetex-7:20180414-19.el8.noarch texlive-tex-7:20180414-19.el8.x86_64 texlive-tex-gyre-7:20180414-19.el8.noarch texlive-tex-gyre-math-7:20180414-19.el8.noarch texlive-tex-ini-files-7:20180414-19.el8.noarch texlive-texconfig-7:20180414-19.el8.noarch texlive-texlive-common-doc-7:20180414-19.el8.noarch texlive-texlive-docindex-7:20180414-19.el8.noarch texlive-texlive-en-7:20180414-19.el8.noarch texlive-texlive-msg-translations-7:20180414-19.el8.noarch texlive-texlive-scripts-7:20180414-19.el8.noarch texlive-texlive.infra-7:20180414-19.el8.noarch texlive-textcase-7:20180414-19.el8.noarch texlive-thumbpdf-7:20180414-19.el8.noarch texlive-times-7:20180414-19.el8.noarch texlive-tipa-7:20180414-19.el8.noarch texlive-tools-7:20180414-19.el8.noarch texlive-txfonts-7:20180414-19.el8.noarch texlive-type1cm-7:20180414-19.el8.noarch texlive-typehtml-7:20180414-19.el8.noarch texlive-ucs-7:20180414-19.el8.noarch texlive-underscore-7:20180414-19.el8.noarch texlive-unicode-data-7:20180414-19.el8.noarch texlive-unicode-math-7:20180414-19.el8.noarch texlive-updmap-map-7:20180414-19.el8.noarch texlive-url-7:20180414-19.el8.noarch texlive-utopia-7:20180414-19.el8.noarch texlive-varwidth-7:20180414-19.el8.noarch texlive-wasy-7:20180414-19.el8.noarch texlive-wasy2-ps-7:20180414-19.el8.noarch texlive-wasysym-7:20180414-19.el8.noarch texlive-xcolor-7:20180414-19.el8.noarch texlive-xdvi-7:20180414-19.el8.x86_64 texlive-xetex-7:20180414-19.el8.x86_64 texlive-xetexconfig-7:20180414-19.el8.noarch texlive-xkeyval-7:20180414-19.el8.noarch texlive-xunicode-7:20180414-19.el8.noarch texlive-zapfchan-7:20180414-19.el8.noarch texlive-zapfding-7:20180414-19.el8.noarch urw-base35-bookman-fonts-20170801-10.el8.noarch urw-base35-c059-fonts-20170801-10.el8.noarch urw-base35-d050000l-fonts-20170801-10.el8.noarch urw-base35-fonts-20170801-10.el8.noarch urw-base35-fonts-common-20170801-10.el8.noarch urw-base35-gothic-fonts-20170801-10.el8.noarch urw-base35-nimbus-mono-ps-fonts-20170801-10.el8.noarch urw-base35-nimbus-roman-fonts-20170801-10.el8.noarch urw-base35-nimbus-sans-fonts-20170801-10.el8.noarch urw-base35-p052-fonts-20170801-10.el8.noarch urw-base35-standard-symbols-ps-fonts-20170801-10.el8.noarch urw-base35-z003-fonts-20170801-10.el8.noarch vim-filesystem-2:8.0.1763-15.el8.noarch xorg-x11-font-utils-1:7.5-40.el8.x86_64 xorg-x11-fonts-ISO8859-1-100dpi-7.5-19.el8.noarch xorg-x11-server-utils-7.7-27.el8.x86_64 zlib-devel-1.2.11-16.2.el8_3.x86_64 zziplib-0.13.68-8.el8.x86_64 Complete! Finish: build setup for apbs-3.0.0-7.1.el8.ors.src.rpm Start: rpmbuild apbs-3.0.0-7.1.el8.ors.src.rpm warning: bogus date in %changelog: Thu Nov 04 2009 Tim Fenn - 1.2.0-1 Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.9XYRpk + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf apbs-pdb2pqr-vAPBS-3.0.0 + /usr/bin/gzip -dc /builddir/build/SOURCES/apbs-pdb2pqr-vAPBS-3.0.0.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd apbs-pdb2pqr-vAPBS-3.0.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (apbs-cmake.patch):' Patch #0 (apbs-cmake.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .apbs-cmake --fuzz=0 patching file apbs/CMakeLists.txt patching file apbs/src/CMakeLists.txt patching file apbs/tools/manip/CMakeLists.txt patching file apbs/tools/mesh/CMakeLists.txt + cp -p apbs/contrib/iapbs/COPYING apbs/contrib/iapbs/iapbs-COPYING + cp -p /builddir/build/SOURCES/apbs-LGPL_V2 apbs/contrib/iapbs/iapbs-LGPLv2 + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.rlcob0 + umask 022 + cd /builddir/build/BUILD + cd apbs-pdb2pqr-vAPBS-3.0.0 + export 'CFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm' + export 'CXXFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm' + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -S apbs -DBUILD_DOC:BOOL=OFF -DCMAKE_BUILD_TYPE:STRING=Release -DENABLE_iAPBS:BOOL=ON -DENABLE_OPENMP:BOOL=ON -DENABLE_VERBOSE_DEBUG:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DENABLE_FETK:BOOL=OFF -DENABLE_PYTHON:BOOL=ON CMake Deprecation Warning at CMakeLists.txt:11 (cmake_policy): The OLD behavior for policy CMP0054 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- The C compiler identification is GNU 8.3.1 -- The CXX compiler identification is GNU 8.3.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Setting project paths -- Setting lookup paths for headers and libraries -- Computing machine epsilon values -- Floating point epsilon is 2.220446e-16 -- Double precision epsilon is 2.220446e-16 -- Looking for time -- Looking for time - found -- Looking for rand -- Looking for rand - found -- Looking for srand -- Looking for srand - found -- Inline functions enabled -- Checking for OpenMP -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- OpenMP support enabled -- Adding apbs_generic -- With source files nosh.c;mgparm.c;femparm.c;pbamparm.c;pbsamparm.c;pbeparm.c;bemparm.c;geoflowparm.c;apolparm.c;vacc.c;valist.c;vatom.c;vpbe.c;vcap.c;vclist.c;vstring.c;vparam.c;vgreen.c -- With external header files nosh.h;mgparm.h;femparm.h;pbamparm.h;pbsamparm.h;pbeparm.h;bemparm.h;geoflowparm.h;apolparm.h;vacc.h;valist.h;vatom.h;vpbe.h;vcap.h;vclist.h;vstring.h;vparam.h;vgreen.h;vmatrix.h;vhal.h;vunit.h -- With internal header files -- With library dependencies m;stdc++;maloc;-fopenmp -- Added apbs_generic -- Adding apbs_pmgc -- With source files buildAd.c;buildBd.c;buildGd.c;buildPd.c;cgd.c;gsd.c;matvecd.c;mgcsd.c;mgdrvd.c;mgsubd.c;mikpckd.c;mlinpckd.c;mypdec.c;newtond.c;newdrvd.c;powerd.c;smoothd.c;mgfasd.c -- With external header files buildAd.h;buildBd.h;buildGd.h;buildPd.h;cgd.h;gsd.h;matvecd.h;mgcsd.h;mgdrvd.h;mgsubd.h;mikpckd.h;mlinpckd.h;mypdec.h;newtond.h;newdrvd.h;powerd.h;smoothd.h;mgfasd.h -- With internal header files -- With library dependencies m;stdc++;maloc;-fopenmp -- Added apbs_pmgc -- Adding apbs_mg -- With source files vgrid.c;vmgrid.c;vopot.c;vpmg.c;vpmgp.c -- With external header files vgrid.h;vmgrid.h;vopot.h;vpmg.h;vpmgp.h -- With internal header files -- With library dependencies m;stdc++;maloc;-fopenmp;apbs_generic;apbs_pmgc -- Added apbs_mg -- Adding apbs_routines -- With source files routines.c -- With external header files -- With internal header files -- With library dependencies m;stdc++;maloc;-fopenmp -- Added apbs_routines -- External Headers: -- -- APBS Libraries: m;stdc++;maloc;-fopenmp -- Internal Libraries: apbs_generic;apbs_pmgc;apbs_mg;apbs_routines -- -- -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -- Supplemental tools enabled -- Building mesh -- libraries: apbs -- Building manip -- libraries: apbs -- Found SWIG: /usr/bin/swig (found version "3.0.12") -- Found Python3: /usr/bin/python3.6 (found version "3.6.8") found components: Interpreter Development Development.Module Development.Embed -- ******* Python3 FOUND -- ***** Python3 include path is: /usr/include/python3.6m -- ***** Python3 library path is: /usr/lib64/libpython3.6m.so -- ***** Python3 library dir is: /usr/lib64 -- Building of iAPBS interface enabled -- Found Python3: /usr/bin/python3.6 (found version "3.6.8") found components: Interpreter -- ******* Python3 FOUND /usr/bin/python3.6 -- TEST born_test COMMAND /usr/bin/python3.6 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs -t born -- TEST actin-dimer-auto_test COMMAND /usr/bin/python3.6 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs -t actin-dimer-auto -- TEST actin-dimer-parallel_test COMMAND /usr/bin/python3.6 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs -t actin-dimer-parallel -- TEST alkanes_test COMMAND /usr/bin/python3.6 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs -t alkanes -- TEST FKBP_test COMMAND /usr/bin/python3.6 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs -t FKBP -- TEST hca-bind_test COMMAND /usr/bin/python3.6 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs -t hca-bind -- TEST ionize_test COMMAND /usr/bin/python3.6 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs -t ionize -- TEST ion-pmf_test COMMAND /usr/bin/python3.6 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs -t ion-pmf -- TEST ion-protein_test COMMAND /usr/bin/python3.6 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs -t ion-protein -- TEST pka-lig_test COMMAND /usr/bin/python3.6 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs -t pka-lig -- TEST point-pmf_test COMMAND /usr/bin/python3.6 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs -t point-pmf -- TEST solv_test COMMAND /usr/bin/python3.6 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs -t solv -- TEST geoflow_test COMMAND /usr/bin/python3.6 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs -t geoflow -- TEST bem_test COMMAND /usr/bin/python3.6 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs -t bem -- TEST bem-pKa_test COMMAND /usr/bin/python3.6 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs -t bem-pKa -- TEST bem-binding-energy_test COMMAND /usr/bin/python3.6 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs -t bem-binding-energy -- TEST pbam_test COMMAND /usr/bin/python3.6 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs -t pbam -- TEST pbsam_test COMMAND /usr/bin/python3.6 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs -t pbsam -- TEST protein-rna_test COMMAND /usr/bin/python3.6 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/apbs_tester.py -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tests/test_cases.cfg -e /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs -t protein-rna -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_SKIP_INSTALL_RPATH LIB_SUFFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 + /usr/lib/rpm/cmake-build . -j2 make: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/cmake -S/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs -B/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/CMakeFiles /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/depend /usr/bin/make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/CMakeFiles/apbs_routines.dir/DependInfo.cmake --color= make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/mg /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/mg/CMakeFiles/apbs_mg.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/CMakeFiles/apbs_routines.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/CMakeFiles/apbs_routines.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/CMakeFiles/apbs_routines.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/mg/CMakeFiles/apbs_mg.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/mg/CMakeFiles/apbs_mg.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/mg/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/mg/CMakeFiles/apbs_mg.dir/depend.internal". Scanning dependencies of target apbs_routines make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' Scanning dependencies of target apbs_mg make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 1%] Building C object src/CMakeFiles/apbs_routines.dir/routines.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_routines.dir/routines.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c [ 2%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/mg && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vgrid.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vgrid.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'loadDielMaps': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:296:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (ii=0; ii<(nx*ny*nz); ii++) ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:298:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' sum = sum*hx*hy*hzed; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:331:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (ii=0; ii<(nx*ny*nz); ii++) ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:333:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' sum = sum*hx*hy*hzed; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:420:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (ii=0; ii<(nx*ny*nz); ii++) ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:422:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' sum = sum*hx*hy*hzed; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:454:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (ii=0; ii<(nx*ny*nz); ii++) ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:456:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' sum = sum*hx*hy*hzed; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vgrid.c: In function 'Vgrid_readDXBIN': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vgrid.c:816:6: warning: variable 'isBinary' set but not used [-Wunused-but-set-variable] int isBinary = 0; ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vgrid.c:813:18: warning: unused variable 'itmp' [-Wunused-variable] size_t i, j, k, itmp, u; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'initMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1234:12: warning: variable 'iparm' set but not used [-Wunused-but-set-variable] iparm, ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'energyMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1584:13: warning: variable 'mgparm' set but not used [-Wunused-but-set-variable] MGparm *mgparm; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vgrid.c: In function 'Vgrid_writeUHBD': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vgrid.c:1697:36: warning: variable 'hy' set but not used [-Wunused-but-set-variable] double xmin, ymin, zmin, hzed, hy, hx; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vgrid.c:1697:30: warning: variable 'hzed' set but not used [-Wunused-but-set-variable] double xmin, ymin, zmin, hzed, hy, hx; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writematMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1803:10: warning: variable 'mxtype' set but not used [-Wunused-but-set-variable] char mxtype[3]; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vgrid.c: In function 'Vgrid_readDXBIN': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vgrid.c:853:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(tok, VMAX_BUFSIZE, fd); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'printApolForce': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:3485:12: warning: variable 'scalar' set but not used [-Wunused-but-set-variable] scalar, ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:3484:12: warning: variable 'temp' set but not used [-Wunused-but-set-variable] double temp, ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'initAPOL': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4496:12: warning: variable 'sav' set but not used [-Wunused-but-set-variable] sav, /**< @todo document */ ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4495:12: warning: variable 'sasa' set but not used [-Wunused-but-set-variable] double sasa, /**< @todo document */ ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4489:12: warning: unused variable 'ts' [-Wunused-variable] time_t ts; /**< Temporary timing variable for debugging (PCE) */ ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'forceAPOL': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4753:13: warning: unused variable 'apos' [-Wunused-variable] *apos; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4737:46: warning: unused variable 'ts_sub' [-Wunused-variable] time_t ts, ts_main, ts_sub; ^~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writematMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1826:34: warning: '-PE' directive writing 3 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] sprintf(writematstem, "%s-PE%d", pbeparm->writematstem,nosh->proc_rank); ^~~ In file included from /usr/include/stdio.h:873, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1038 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1840:30: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(outpath, "%s.%s", writematstem, "mat"); ^~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writedataFlat': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1906:44: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] double conversion, ltenergy, gtenergy, scalar; ^~~~~~ [ 3%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writedataXML': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2140:44: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] double conversion, ltenergy, gtenergy, scalar; ^~~~~~ cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/mg && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vmgrid.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vmgrid.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vmgrid.c: In function 'Vmgrid_addGrid': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vmgrid.c:198:12: warning: unused variable 'tgrad' [-Wunused-variable] double tgrad[3]; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vmgrid.c:197:15: warning: unused variable 'rc' [-Wunused-variable] int i, j, rc; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vmgrid.c:197:12: warning: unused variable 'j' [-Wunused-variable] int i, j, rc; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vmgrid.c:197:9: warning: unused variable 'i' [-Wunused-variable] int i, j, rc; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writedataMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2676:30: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(outpath, "%s.%s", writestem, "dxbin"); ^~ ~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2720:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(outpath, "%s.%s", writestem, "txt"); ^~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2711:38: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(outpath, "%s.%s", writestem, "dx.gz"); ^~ ~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2694:38: warning: '%s' directive writing 4 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(outpath, "%s.%s", writestem, "mcsf"); ^~ ~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 6 and 1029 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2687:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(outpath, "%s.%s", writestem, "ucd"); ^~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2701:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(outpath, "%s.%s", writestem, "grd"); ^~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2666:38: warning: '%s' directive writing 2 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(outpath, "%s.%s", writestem, "dx"); ^~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 4 and 1027 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 4%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/mg && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vopot.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vopot.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vopot.c: In function 'Vopot_curvature': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vopot.c:219:26: warning: variable 'eps_w' set but not used [-Wunused-but-set-variable] double u, T, charge, eps_w, xkappa, dist, size, val, *position, zkappa2; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vopot.c:219:18: warning: variable 'charge' set but not used [-Wunused-but-set-variable] double u, T, charge, eps_w, xkappa, dist, size, val, *position, zkappa2; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vopot.c:219:15: warning: variable 'T' set but not used [-Wunused-but-set-variable] double u, T, charge, eps_w, xkappa, dist, size, val, *position, zkappa2; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'returnEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2762:12: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] scalar; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vopot.c:269:23: warning: 'val' may be used uninitialized in this function [-Wmaybe-uninitialized] u = u + val; ~~^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'printEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2795:12: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] scalar; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'printElecEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2863:12: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] scalar; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'printApolEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2970:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] gtenergy += (scalar * ((apolparm->gamma*apolparm->sasa) + ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (apolparm->press*apolparm->sav) + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (apolparm->wcaEnergy))); ~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/mg && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vpmg.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'Vpmg_ctor2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:157:61: warning: variable 'zkappa2' set but not used [-Wunused-but-set-variable] double ionConc[MAXION], ionQ[MAXION], ionRadii[MAXION], zkappa2, zks2; ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'Vpmg_qmEnergySMPBE': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1503:12: warning: variable 'zks2' set but not used [-Wunused-but-set-variable] zks2; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'Vpmg_qfEnergyPoint': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1712:13: warning: variable 'pvec' set but not used [-Wunused-but-set-variable] double *pvec; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1709:24: warning: variable 'zmax' set but not used [-Wunused-but-set-variable] double xmax, ymax, zmax, xmin, ymin, zmin, hx, hy, hzed, ifloat, jfloat; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1709:18: warning: variable 'ymax' set but not used [-Wunused-but-set-variable] double xmax, ymax, zmax, xmin, ymin, zmin, hx, hy, hzed, ifloat, jfloat; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1709:12: warning: variable 'xmax' set but not used [-Wunused-but-set-variable] double xmax, ymax, zmax, xmin, ymin, zmin, hx, hy, hzed, ifloat, jfloat; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'Vpmg_qfAtomEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1794:36: warning: variable 'zmax' set but not used [-Wunused-but-set-variable] double xmax, xmin, ymax, ymin, zmax, zmin, hx, hy, hzed, ifloat, jfloat; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1794:24: warning: variable 'ymax' set but not used [-Wunused-but-set-variable] double xmax, xmin, ymax, ymin, zmax, zmin, hx, hy, hzed, ifloat, jfloat; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1794:12: warning: variable 'xmax' set but not used [-Wunused-but-set-variable] double xmax, xmin, ymax, ymin, zmax, zmin, hx, hy, hzed, ifloat, jfloat; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'focusFillBound': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1953:12: warning: variable 'charge' set but not used [-Wunused-but-set-variable] charge, ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1952:13: warning: variable 'apos' set but not used [-Wunused-but-set-variable] *apos, ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1951:12: warning: variable 'size' set but not used [-Wunused-but-set-variable] size, ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1950:12: warning: variable 'xkappa' set but not used [-Wunused-but-set-variable] xkappa, ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcfl2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:2668:40: warning: variable 'qzy' set but not used [-Wunused-but-set-variable] double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:2668:36: warning: variable 'qzx' set but not used [-Wunused-but-set-variable] double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:2668:24: warning: variable 'qyx' set but not used [-Wunused-but-set-variable] double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcCalcOrig': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:2832:34: warning: unused variable 'debye' [-Wunused-variable] double *dipole, *quadrupole, debye, eps_p; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:2832:22: warning: variable 'quadrupole' set but not used [-Wunused-but-set-variable] double *dipole, *quadrupole, debye, eps_p; ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:2832:13: warning: variable 'dipole' set but not used [-Wunused-but-set-variable] double *dipole, *quadrupole, debye, eps_p; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcflnew': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3415:31: warning: variable 'eps_p' set but not used [-Wunused-but-set-variable] double dist, pre1, eps_w, eps_p, T, xkappa; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3410:29: warning: unused variable 'z1' [-Wunused-variable] int x0, x1, y0, y1, z0, z1; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3410:25: warning: unused variable 'z0' [-Wunused-variable] int x0, x1, y0, y1, z0, z1; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3410:21: warning: unused variable 'y1' [-Wunused-variable] int x0, x1, y0, y1, z0, z1; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3410:17: warning: unused variable 'y0' [-Wunused-variable] int x0, x1, y0, y1, z0, z1; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3410:13: warning: unused variable 'x1' [-Wunused-variable] int x0, x1, y0, y1, z0, z1; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3410:9: warning: unused variable 'x0' [-Wunused-variable] int x0, x1, y0, y1, z0, z1; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3409:13: warning: unused variable 'k' [-Wunused-variable] int i,j,k, iatom, igrid; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3409:11: warning: unused variable 'j' [-Wunused-variable] int i,j,k, iatom, igrid; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3409:9: warning: unused variable 'i' [-Wunused-variable] int i,j,k, iatom, igrid; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'multipolebc': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3492:19: warning: variable 'kr3' set but not used [-Wunused-but-set-variable] double kr,kr2,kr3; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcfl_sdh': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3608:40: warning: variable 'qzy' set but not used [-Wunused-but-set-variable] double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3608:36: warning: variable 'qzx' set but not used [-Wunused-but-set-variable] double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3608:24: warning: variable 'qyx' set but not used [-Wunused-but-set-variable] double qxx,qxy,qxz,qyx,qyy,qyz,qzx,qzy,qzz; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3604:22: warning: unused variable 'quadrupole' [-Wunused-variable] double *dipole, *quadrupole; ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3604:13: warning: unused variable 'dipole' [-Wunused-variable] double *dipole, *quadrupole; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcfl_mdh': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3875:41: warning: variable 'eps_p' set but not used [-Wunused-but-set-variable] double size, charge, xkappa, eps_w, eps_p, T, pre1, dist; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3874:22: warning: unused variable 'quadrupole' [-Wunused-variable] double *dipole, *quadrupole; ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3874:13: warning: unused variable 'dipole' [-Wunused-variable] double *dipole, *quadrupole; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcfl_mem': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4008:24: warning: unused variable 'edge_L' [-Wunused-variable] double A, B, C, D, edge_L, l; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4007:38: warning: unused variable 'z_shift' [-Wunused-variable] double dist, val, z_low, z_high, z_shift; ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4007:12: warning: unused variable 'dist' [-Wunused-variable] double dist, val, z_low, z_high, z_shift; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcfl_map': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4177:38: warning: variable 'hzed' set but not used [-Wunused-but-set-variable] double position[3], pot, hx, hy, hzed; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4177:34: warning: variable 'hy' set but not used [-Wunused-but-set-variable] double position[3], pot, hx, hy, hzed; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4177:30: warning: variable 'hx' set but not used [-Wunused-but-set-variable] double position[3], pot, hx, hy, hzed; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4176:11: warning: unused variable 'pbe' [-Wunused-variable] Vpbe *pbe; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoCoefMap': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4492:46: warning: unused variable 'pot' [-Wunused-variable] double ionstr, position[3], tkappa, eps, pot, hx, hy, hzed; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoCoefMolIon': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4638:16: warning: variable 'surfMeth' set but not used [-Wunused-but-set-variable] Vsurf_Meth surfMeth; ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4630:11: warning: variable 'acc' set but not used [-Wunused-but-set-variable] Vacc *acc; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoCoefMolDielNoSmooth': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:4746:30: warning: unused variable 'deps' [-Wunused-variable] double srad, epsw, epsp, deps, area; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoCoefSpline': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5031:47: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable] double dx2, dy2, dz2, stot2, itot2, rtot, rtot2, splineWin, w3i; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoCharge': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5289:15: warning: unused variable 'rc' [-Wunused-variable] Vrc_Codes rc; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoChargeMap': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5346:49: warning: variable 'hzed' set but not used [-Wunused-but-set-variable] double position[3], charge, zmagic, hx, hy, hzed; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5346:45: warning: variable 'hy' set but not used [-Wunused-but-set-variable] double position[3], charge, zmagic, hx, hy, hzed; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5346:41: warning: variable 'hx' set but not used [-Wunused-but-set-variable] double position[3], charge, zmagic, hx, hy, hzed; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'Vpmg_force': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5829:12: warning: unused variable 'npF' [-Wunused-variable] double npF[3]; /* Non-polar boundary force */ ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'Vpmg_ibForce': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5854:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable] double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5854:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable] double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5854:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable] double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:5848:13: warning: variable 'alist' set but not used [-Wunused-but-set-variable] Valist *alist; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'Vpmg_dbForce': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6019:55: warning: variable 'kT' set but not used [-Wunused-but-set-variable] double rtot, dx, gpos[3], tgrad[3], dbFmag, epsw, kT; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6019:18: warning: variable 'dx' set but not used [-Wunused-but-set-variable] double rtot, dx, gpos[3], tgrad[3], dbFmag, epsw, kT; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6018:66: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable] double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6018:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable] double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6018:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable] double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6018:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable] double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax, rtot2, epsp; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'qfForceSpline2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6453:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable] double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6453:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable] double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6453:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable] double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'qfForceSpline4': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6576:15: warning: unused variable 'k' [-Wunused-variable] int i, j, k, ii, jj, kk; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6576:12: warning: unused variable 'j' [-Wunused-variable] int i, j, k, ii, jj, kk; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6568:24: warning: variable 'zlen' set but not used [-Wunused-but-set-variable] double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6568:18: warning: variable 'ylen' set but not used [-Wunused-but-set-variable] double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6568:12: warning: variable 'xlen' set but not used [-Wunused-but-set-variable] double xlen, ylen, zlen, xmin, ymin, zmin, xmax, ymax, zmax; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'markFrac': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6692:39: warning: variable 'a000' set but not used [-Wunused-but-set-variable] double dx, dx2, dy, dy2, dz, dz2, a000, a001, a010, a100, r2; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'zlapSolve': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6912:12: warning: unused variable 'norm' [-Wunused-variable] double norm, coef, proj, eigx, eigy, eigz; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'Vpmg_solveLaplace': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7044:35: warning: variable 'n' set but not used [-Wunused-but-set-variable] int i, j, k, ijk, nx, ny, nz, n, dilo, dihi, djlo, djhi, dklo, dkhi; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7044:18: warning: unused variable 'ijk' [-Wunused-variable] int i, j, k, ijk, nx, ny, nz, n, dilo, dihi, djlo, djhi, dklo, dkhi; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoPermanentMultipole': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:58: warning: unused variable 'mqzz' [-Wunused-variable] double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:53: warning: unused variable 'mqzy' [-Wunused-variable] double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:48: warning: unused variable 'mqzx' [-Wunused-variable] double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:43: warning: unused variable 'mqyy' [-Wunused-variable] double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:38: warning: unused variable 'mqyx' [-Wunused-variable] double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:33: warning: unused variable 'mqxx' [-Wunused-variable] double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:29: warning: unused variable 'muz' [-Wunused-variable] double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:25: warning: unused variable 'muy' [-Wunused-variable] double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:21: warning: unused variable 'mux' [-Wunused-variable] double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:18: warning: unused variable 'mc' [-Wunused-variable] double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7263:12: warning: unused variable 'debye' [-Wunused-variable] double debye,mc,mux,muy,muz,mqxx,mqyx,mqyy,mqzx,mqzy,mqzz; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7262:24: warning: unused variable 'mr2' [-Wunused-variable] double mir,mjr,mkr,mr2; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7262:20: warning: unused variable 'mkr' [-Wunused-variable] double mir,mjr,mkr,mr2; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7262:16: warning: unused variable 'mjr' [-Wunused-variable] double mir,mjr,mkr,mr2; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7262:12: warning: unused variable 'mir' [-Wunused-variable] double mir,mjr,mkr,mr2; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7258:9: warning: unused variable 'i' [-Wunused-variable] int i, ii, jj, kk, nx, ny, nz, iatom; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7253:47: warning: unused variable 'qave' [-Wunused-variable] double c,ux,uy,uz,qxx,qyx,qyy,qzx,qzy,qzz,qave; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7252:29: warning: unused variable 'quad' [-Wunused-variable] double charge, *dipole,*quad; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7252:21: warning: unused variable 'dipole' [-Wunused-variable] double charge, *dipole,*quad; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoCoefSpline4': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:9948:47: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable] double dx2, dy2, dz2, stot2, itot2, rtot, rtot2, splineWin; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:9946:42: warning: unused variable 'w2i' [-Wunused-variable] double irad, dx, dy, dz, epsw, epsp, w2i; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoPermanentInduced': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10278:9: warning: unused variable 'i' [-Wunused-variable] int i, ii, jj, kk, nx, ny, nz, iatom; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10273:47: warning: unused variable 'qave' [-Wunused-variable] double c,ux,uy,uz,qxx,qyx,qyy,qzx,qzy,qzz,qave; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10272:29: warning: unused variable 'quad' [-Wunused-variable] double charge, *dipole,*quad; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10272:21: warning: unused variable 'dipole' [-Wunused-variable] double charge, *dipole,*quad; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'fillcoCoefSpline3': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10441:27: warning: variable 'e5' set but not used [-Wunused-but-set-variable] double e, e2, e3, e4, e5; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10439:47: warning: variable 'rtot2' set but not used [-Wunused-but-set-variable] double dx2, dy2, dz2, stot2, itot2, rtot, rtot2, splineWin; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10437:42: warning: unused variable 'w2i' [-Wunused-variable] double irad, dx, dy, dz, epsw, epsp, w2i; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcolcomp': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10746:55: warning: variable 'mxlv' set but not used [-Wunused-but-set-variable] int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10746:47: warning: unused variable 'maxlev' [-Wunused-variable] int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10746:39: warning: unused variable 'ierror' [-Wunused-variable] int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10746:15: warning: variable 'niwk' set but not used [-Wunused-but-set-variable] int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10746:9: warning: variable 'nrwk' set but not used [-Wunused-but-set-variable] int nrwk, niwk, nx, ny, nz, nlev, ierror, maxlev, mxlv; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10743:29: warning: unused variable 'i' [-Wunused-variable] int nrow, ncol, nnzero, i; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10743:21: warning: unused variable 'nnzero' [-Wunused-variable] int nrow, ncol, nnzero, i; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10743:15: warning: unused variable 'ncol' [-Wunused-variable] int nrow, ncol, nnzero, i; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10743:9: warning: unused variable 'nrow' [-Wunused-variable] int nrow, ncol, nnzero, i; ^~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:73: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcolcomp2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10804:5: note: in expansion of macro 'MAT2' MAT2(iz, 50, nlev); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcolcomp3': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10836:5: note: in expansion of macro 'MAT2' MAT2(ac, *nx * *ny * *nz, 1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: In function 'bcolcomp4': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10874:5: note: in expansion of macro 'MAT3' MAT3(oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10873:5: note: in expansion of macro 'MAT3' MAT3(cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10872:5: note: in expansion of macro 'MAT3' MAT3(uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10871:5: note: in expansion of macro 'MAT3' MAT3(oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10870:5: note: in expansion of macro 'MAT3' MAT3(oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:10866:27: warning: variable 'nrow' set but not used [-Wunused-but-set-variable] int inonz, iirow, nn, nrow, ncol, nonz, irow, n; ^~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:73: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:7229:16: warning: 'd3bspline4' defined but not used [-Wunused-function] VPUBLIC double d3bspline4(double x) { ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:6684:15: warning: 'markFrac' defined but not used [-Wunused-function] VPRIVATE void markFrac( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:3868:15: warning: 'bcfl_mdh' defined but not used [-Wunused-function] VPRIVATE void bcfl_mdh(Vpmg *thee){ ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:2828:15: warning: 'bcCalcOrig' defined but not used [-Wunused-function] VPRIVATE void bcCalcOrig(Vpmg *thee) { ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:2547:17: warning: 'bcfl1sp' defined but not used [-Wunused-function] VPRIVATE double bcfl1sp(double size, double *apos, double charge, ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.c:1148:17: warning: 'Vpmg_polarizEnergy' defined but not used [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy(Vpmg *thee, ^~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 5%] Built target apbs_routines /usr/bin/make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/generic /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/generic/CMakeFiles/apbs_generic.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/generic/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/generic/CMakeFiles/apbs_generic.dir/depend.internal". Scanning dependencies of target apbs_generic make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 7%] Building C object src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/nosh.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c: In function 'NOsh_setupCalcGEOFLOWMANUAL': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:2683:15: warning: variable 'apolparm' set but not used [-Wunused-but-set-variable] APOLparm *apolparm = VNULL; ^~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:57: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:57: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.c:57: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ [ 8%] Building C object src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/mgparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/mgparm.c [ 9%] Building C object src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/femparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/femparm.c [ 10%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/pbamparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c: In function 'PBAMparm_parseRandorient': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:305:17: warning: unused variable 'name' [-Wunused-variable] const char* name = "randorient"; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c: In function 'PBAMparm_parse3Dmap': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:373:10: warning: unused variable 'tok' [-Wunused-variable] char tok[VMAX_BUFSIZE]; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.c:372:17: warning: unused variable 'name' [-Wunused-variable] const char* name = "3dmap"; ^~~~ [ 11%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/pbsamparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.c: In function 'PBSAMparm_ctor2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.c:79:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.c: In function 'PBSAMparm_parseMSMS': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.c:183:6: warning: unused variable 'td' [-Wunused-variable] int td; ^~ [ 12%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/pbeparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbeparm.c [ 14%] Building C object src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/bemparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c: In function 'BEMparm_ctor2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c:79:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c: In function 'BEMparm_check': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c:127:36: warning: unused variable 'nlev' [-Wunused-variable] int i, tdime[3], ti, tnlev[3], nlev; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c:127:26: warning: unused variable 'tnlev' [-Wunused-variable] int i, tdime[3], ti, tnlev[3], nlev; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c:127:22: warning: unused variable 'ti' [-Wunused-variable] int i, tdime[3], ti, tnlev[3], nlev; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c:127:12: warning: unused variable 'tdime' [-Wunused-variable] int i, tdime[3], ti, tnlev[3], nlev; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c:127:9: warning: unused variable 'i' [-Wunused-variable] int i, tdime[3], ti, tnlev[3], nlev; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c: In function 'BEMparm_copy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/bemparm.c:176:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ [ 15%] Building C object src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/geoflowparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.c: In function 'GEOFLOWparm_ctor2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.c:79:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ [ 16%] Building C object src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/apolparm.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/apolparm.c [ 17%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vacc.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c [ 18%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/mg && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_mg.dir/vpmgp.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmgp.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c: In function 'VaccSurf_dtor': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:841:11: warning: variable 'mem' set but not used [-Wunused-but-set-variable] Vmem *mem; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c: In function 'Vacc_splineAccGradAtomNorm3': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1104:27: warning: variable 'e5' set but not used [-Wunused-but-set-variable] double e, e2, e3, e4, e5; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c: In function 'Vacc_atomdSASA': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1338:12: warning: variable 'ts' set but not used [-Wunused-but-set-variable] time_t ts; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1335:15: warning: variable 'ref' set but not used [-Wunused-but-set-variable] VaccSurf *ref; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c: In function 'Vacc_totalAtomdSASA': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1395:15: warning: variable 'ref' set but not used [-Wunused-but-set-variable] VaccSurf *ref; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1392:23: warning: variable 'tRad' set but not used [-Wunused-but-set-variable] double *temp_Pos, tRad; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1391:9: warning: variable 'iatom' set but not used [-Wunused-but-set-variable] int iatom; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c: In function 'Vacc_totalAtomdSAV': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1454:15: warning: variable 'ref' set but not used [-Wunused-but-set-variable] VaccSurf *ref; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1451:23: warning: variable 'tRad' set but not used [-Wunused-but-set-variable] double *temp_Pos, tRad; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1450:9: warning: variable 'iatom' set but not used [-Wunused-but-set-variable] int iatom; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c: In function 'Vacc_wcaEnergyAtom': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1584:9: warning: variable 'npts' set but not used [-Wunused-but-set-variable] int npts[3]; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c: In function 'Vacc_wcaForceAtom': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1807:12: warning: variable 'ts' set but not used [-Wunused-but-set-variable] time_t ts; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vacc.c:1764:9: warning: variable 'npts' set but not used [-Wunused-but-set-variable] npts[3], ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmgp.c: In function 'Vpmgp_size': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmgp.c:204:87: warning: unused variable 'iretot' [-Wunused-variable] int nxf, nyf, nzf, level, num_nf_oper, num_narrc_oper, n_band, nc_band, num_band, iretot; ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 18%] Built target apbs_mg /usr/bin/make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/pmgc /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/pmgc/CMakeFiles/apbs_pmgc.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/pmgc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/pmgc/CMakeFiles/apbs_pmgc.dir/depend.internal". Scanning dependencies of target apbs_pmgc make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 20%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildAd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c: In function 'VbuildA': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:66:5: note: in expansion of macro 'MAT2' MAT2(ac, *nx * *ny * *nz, 14); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c: In function 'VbuildA_fv': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzcf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:167:5: note: in expansion of macro 'MAT3' MAT3(gzcf, *nx, *ny, 2); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gycf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:166:5: note: in expansion of macro 'MAT3' MAT3(gycf, *nx, *nz, 2); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxcf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:165:5: note: in expansion of macro 'MAT3' MAT3(gxcf, *ny, *nz, 2); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:164:5: note: in expansion of macro 'MAT3' MAT3( oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:163:5: note: in expansion of macro 'MAT3' MAT3( oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:162:5: note: in expansion of macro 'MAT3' MAT3( uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a3cf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:161:5: note: in expansion of macro 'MAT3' MAT3(a3cf, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a2cf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:160:5: note: in expansion of macro 'MAT3' MAT3(a2cf, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a1cf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:159:5: note: in expansion of macro 'MAT3' MAT3(a1cf, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:158:5: note: in expansion of macro 'MAT3' MAT3( oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_ccf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:157:5: note: in expansion of macro 'MAT3' MAT3( ccf, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:156:5: note: in expansion of macro 'MAT3' MAT3( cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fcf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:155:5: note: in expansion of macro 'MAT3' MAT3( fcf, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildAd.c:154:5: note: in expansion of macro 'MAT3' MAT3( fc, *nx, *ny, *nz); ^~~~ [ 21%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildBd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c: In function 'Vbuildband': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:65:5: note: in expansion of macro 'MAT2' MAT2(ac, *nx * *ny * *nz, 1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c: In function 'Vbuildband1_7': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:133:5: note: in expansion of macro 'MAT3' MAT3(uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:132:5: note: in expansion of macro 'MAT3' MAT3(oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:131:5: note: in expansion of macro 'MAT3' MAT3(oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:130:5: note: in expansion of macro 'MAT3' MAT3(oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_acB' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:128:5: note: in expansion of macro 'MAT2' MAT2(acB, *lda, *ny-1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c: In function 'Vbuildband1_27': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:213:5: note: in expansion of macro 'MAT3' MAT3(uSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:212:5: note: in expansion of macro 'MAT3' MAT3(uSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:211:5: note: in expansion of macro 'MAT3' MAT3(uNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:210:5: note: in expansion of macro 'MAT3' MAT3(uNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:208:5: note: in expansion of macro 'MAT3' MAT3( uS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:207:5: note: in expansion of macro 'MAT3' MAT3( uN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:206:5: note: in expansion of macro 'MAT3' MAT3( uW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:205:5: note: in expansion of macro 'MAT3' MAT3( uE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:203:5: note: in expansion of macro 'MAT3' MAT3(oNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:202:5: note: in expansion of macro 'MAT3' MAT3(oNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:200:5: note: in expansion of macro 'MAT3' MAT3( uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:199:5: note: in expansion of macro 'MAT3' MAT3( oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:198:5: note: in expansion of macro 'MAT3' MAT3( oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:197:5: note: in expansion of macro 'MAT3' MAT3( oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_acB' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildBd.c:195:5: note: in expansion of macro 'MAT2' MAT2(acB, *lda, *ny-1); ^~~~ [ 22%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildGd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c: In function 'VbuildG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:64:5: note: in expansion of macro 'MAT2' MAT2( ac, *nxc * *nyc * *nzc, 27); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_acFF' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:63:5: note: in expansion of macro 'MAT2' MAT2(acFF, *nxf * *nyf * *nzf, 27); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pcFF' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:62:5: note: in expansion of macro 'MAT2' MAT2(pcFF, *nxc * *nyc * *nzc, 27); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c: In function 'VbuildG_1': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:216:5: note: in expansion of macro 'MAT3' MAT3(dPSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:215:5: note: in expansion of macro 'MAT3' MAT3(dPSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:214:5: note: in expansion of macro 'MAT3' MAT3(dPNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:213:5: note: in expansion of macro 'MAT3' MAT3(dPNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:212:5: note: in expansion of macro 'MAT3' MAT3( dPW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:211:5: note: in expansion of macro 'MAT3' MAT3( dPE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:210:5: note: in expansion of macro 'MAT3' MAT3( dPS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:209:5: note: in expansion of macro 'MAT3' MAT3( dPN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:208:5: note: in expansion of macro 'MAT3' MAT3( dPC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:206:5: note: in expansion of macro 'MAT3' MAT3(uPSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:205:5: note: in expansion of macro 'MAT3' MAT3(uPSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:204:5: note: in expansion of macro 'MAT3' MAT3(uPNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:203:5: note: in expansion of macro 'MAT3' MAT3(uPNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:202:5: note: in expansion of macro 'MAT3' MAT3( uPW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:201:5: note: in expansion of macro 'MAT3' MAT3( uPE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:200:5: note: in expansion of macro 'MAT3' MAT3( uPS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:199:5: note: in expansion of macro 'MAT3' MAT3( uPN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:198:5: note: in expansion of macro 'MAT3' MAT3( uPC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:196:5: note: in expansion of macro 'MAT3' MAT3(oPSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:195:5: note: in expansion of macro 'MAT3' MAT3(oPSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:194:5: note: in expansion of macro 'MAT3' MAT3(oPNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:193:5: note: in expansion of macro 'MAT3' MAT3(oPNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:192:5: note: in expansion of macro 'MAT3' MAT3( oPW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:191:5: note: in expansion of macro 'MAT3' MAT3( oPE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:190:5: note: in expansion of macro 'MAT3' MAT3( oPS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:189:5: note: in expansion of macro 'MAT3' MAT3( oPN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:188:5: note: in expansion of macro 'MAT3' MAT3( oPC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:186:5: note: in expansion of macro 'MAT3' MAT3(XuSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:185:5: note: in expansion of macro 'MAT3' MAT3(XuSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:184:5: note: in expansion of macro 'MAT3' MAT3(XuNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:183:5: note: in expansion of macro 'MAT3' MAT3(XuNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:182:5: note: in expansion of macro 'MAT3' MAT3( XuS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:181:5: note: in expansion of macro 'MAT3' MAT3( XuN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:180:5: note: in expansion of macro 'MAT3' MAT3( XuW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:179:5: note: in expansion of macro 'MAT3' MAT3( XuE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:177:5: note: in expansion of macro 'MAT3' MAT3(XoNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:176:5: note: in expansion of macro 'MAT3' MAT3(XoNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:174:5: note: in expansion of macro 'MAT3' MAT3( XuC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:172:5: note: in expansion of macro 'MAT3' MAT3( XoN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:171:5: note: in expansion of macro 'MAT3' MAT3( XoE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:170:5: note: in expansion of macro 'MAT3' MAT3( XoC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:168:5: note: in expansion of macro 'MAT3' MAT3( oC, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:164:21: warning: variable 'nzm1' set but not used [-Wunused-but-set-variable] int nxm1, nym1, nzm1; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:164:15: warning: variable 'nym1' set but not used [-Wunused-but-set-variable] int nxm1, nym1, nzm1; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:164:9: warning: variable 'nxm1' set but not used [-Wunused-but-set-variable] int nxm1, nym1, nzm1; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:163:33: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable] int iim1, iip1, jjm1, jjp1, kkm1, kkp1; ^~~~ [ 23%] Building C object src/generic/CMakeFiles/apbs_generic.dir/valist.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/valist.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/valist.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c: In function 'VbuildG_7': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:532:5: note: in expansion of macro 'MAT3' MAT3(dPSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:531:5: note: in expansion of macro 'MAT3' MAT3(dPSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:530:5: note: in expansion of macro 'MAT3' MAT3(dPNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:529:5: note: in expansion of macro 'MAT3' MAT3(dPNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:528:5: note: in expansion of macro 'MAT3' MAT3( dPW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:527:5: note: in expansion of macro 'MAT3' MAT3( dPE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:526:5: note: in expansion of macro 'MAT3' MAT3( dPS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:525:5: note: in expansion of macro 'MAT3' MAT3( dPN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:524:5: note: in expansion of macro 'MAT3' MAT3( dPC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:522:5: note: in expansion of macro 'MAT3' MAT3(uPSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:521:5: note: in expansion of macro 'MAT3' MAT3(uPSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:520:5: note: in expansion of macro 'MAT3' MAT3(uPNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:519:5: note: in expansion of macro 'MAT3' MAT3(uPNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:518:5: note: in expansion of macro 'MAT3' MAT3( uPW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:517:5: note: in expansion of macro 'MAT3' MAT3( uPE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:516:5: note: in expansion of macro 'MAT3' MAT3( uPS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:515:5: note: in expansion of macro 'MAT3' MAT3( uPN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:514:5: note: in expansion of macro 'MAT3' MAT3( uPC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:512:5: note: in expansion of macro 'MAT3' MAT3(oPSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:511:5: note: in expansion of macro 'MAT3' MAT3(oPSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:510:5: note: in expansion of macro 'MAT3' MAT3(oPNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:509:5: note: in expansion of macro 'MAT3' MAT3(oPNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:508:5: note: in expansion of macro 'MAT3' MAT3( oPW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:507:5: note: in expansion of macro 'MAT3' MAT3( oPE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:506:5: note: in expansion of macro 'MAT3' MAT3( oPS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:505:5: note: in expansion of macro 'MAT3' MAT3( oPN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:504:5: note: in expansion of macro 'MAT3' MAT3( oPC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:502:5: note: in expansion of macro 'MAT3' MAT3(XuSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:501:5: note: in expansion of macro 'MAT3' MAT3(XuSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:500:5: note: in expansion of macro 'MAT3' MAT3(XuNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:499:5: note: in expansion of macro 'MAT3' MAT3(XuNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:498:5: note: in expansion of macro 'MAT3' MAT3( XuS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:497:5: note: in expansion of macro 'MAT3' MAT3( XuN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:496:5: note: in expansion of macro 'MAT3' MAT3( XuW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:495:5: note: in expansion of macro 'MAT3' MAT3( XuE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:494:5: note: in expansion of macro 'MAT3' MAT3( XuC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:492:5: note: in expansion of macro 'MAT3' MAT3(XoNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:491:5: note: in expansion of macro 'MAT3' MAT3(XoNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:490:5: note: in expansion of macro 'MAT3' MAT3( XoN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:489:5: note: in expansion of macro 'MAT3' MAT3( XoE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:488:5: note: in expansion of macro 'MAT3' MAT3( XoC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:486:5: note: in expansion of macro 'MAT3' MAT3( uC, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:484:5: note: in expansion of macro 'MAT3' MAT3( oN, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:483:5: note: in expansion of macro 'MAT3' MAT3( oE, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:482:5: note: in expansion of macro 'MAT3' MAT3( oC, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:473:21: warning: variable 'nzm1' set but not used [-Wunused-but-set-variable] int nxm1, nym1, nzm1; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:473:15: warning: variable 'nym1' set but not used [-Wunused-but-set-variable] int nxm1, nym1, nzm1; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:473:9: warning: variable 'nxm1' set but not used [-Wunused-but-set-variable] int nxm1, nym1, nzm1; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:472:9: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable] int kkm1, kkp1; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:469:28: warning: variable 'kp2' set but not used [-Wunused-but-set-variable] int km1, kp1, km2, kp2; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:469:22: warning: variable 'km2' set but not used [-Wunused-but-set-variable] int km1, kp1, km2, kp2; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:468:28: warning: variable 'jp2' set but not used [-Wunused-but-set-variable] int jm1, jp1, jm2, jp2; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:467:28: warning: variable 'ip2' set but not used [-Wunused-but-set-variable] int im1, ip1, im2, ip2; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/valist.c: In function 'Valist_readPQR': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/valist.c:618:10: warning: unused variable 'chs' [-Wunused-variable] char chs[VMAX_BUFSIZE]; ^~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c: In function 'VbuildG_27': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1380:5: note: in expansion of macro 'MAT3' MAT3(dPSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1379:5: note: in expansion of macro 'MAT3' MAT3(dPSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1378:5: note: in expansion of macro 'MAT3' MAT3(dPNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1377:5: note: in expansion of macro 'MAT3' MAT3(dPNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1376:5: note: in expansion of macro 'MAT3' MAT3( dPW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1375:5: note: in expansion of macro 'MAT3' MAT3( dPE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1374:5: note: in expansion of macro 'MAT3' MAT3( dPS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1373:5: note: in expansion of macro 'MAT3' MAT3( dPN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1372:5: note: in expansion of macro 'MAT3' MAT3( dPC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1370:5: note: in expansion of macro 'MAT3' MAT3(uPSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1369:5: note: in expansion of macro 'MAT3' MAT3(uPSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1368:5: note: in expansion of macro 'MAT3' MAT3(uPNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1367:5: note: in expansion of macro 'MAT3' MAT3(uPNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1366:5: note: in expansion of macro 'MAT3' MAT3( uPW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1365:5: note: in expansion of macro 'MAT3' MAT3( uPE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1364:5: note: in expansion of macro 'MAT3' MAT3( uPS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1363:5: note: in expansion of macro 'MAT3' MAT3( uPN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1362:5: note: in expansion of macro 'MAT3' MAT3( uPC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1360:5: note: in expansion of macro 'MAT3' MAT3(oPSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1359:5: note: in expansion of macro 'MAT3' MAT3(oPSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1358:5: note: in expansion of macro 'MAT3' MAT3(oPNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1357:5: note: in expansion of macro 'MAT3' MAT3(oPNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1356:5: note: in expansion of macro 'MAT3' MAT3( oPW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1355:5: note: in expansion of macro 'MAT3' MAT3( oPE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1354:5: note: in expansion of macro 'MAT3' MAT3( oPS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1353:5: note: in expansion of macro 'MAT3' MAT3( oPN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1352:5: note: in expansion of macro 'MAT3' MAT3( oPC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1350:5: note: in expansion of macro 'MAT3' MAT3(XuSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1349:5: note: in expansion of macro 'MAT3' MAT3(XuSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1348:5: note: in expansion of macro 'MAT3' MAT3(XuNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1347:5: note: in expansion of macro 'MAT3' MAT3(XuNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1346:5: note: in expansion of macro 'MAT3' MAT3( XuS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1345:5: note: in expansion of macro 'MAT3' MAT3( XuN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1344:5: note: in expansion of macro 'MAT3' MAT3( XuW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1343:5: note: in expansion of macro 'MAT3' MAT3( XuE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XuC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1342:5: note: in expansion of macro 'MAT3' MAT3( XuC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1340:5: note: in expansion of macro 'MAT3' MAT3(XoNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1339:5: note: in expansion of macro 'MAT3' MAT3(XoNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1338:5: note: in expansion of macro 'MAT3' MAT3( XoN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1337:5: note: in expansion of macro 'MAT3' MAT3( XoE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_XoC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1336:5: note: in expansion of macro 'MAT3' MAT3( XoC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1334:5: note: in expansion of macro 'MAT3' MAT3( uSW, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1333:5: note: in expansion of macro 'MAT3' MAT3( uSE, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1332:5: note: in expansion of macro 'MAT3' MAT3( uNW, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1331:5: note: in expansion of macro 'MAT3' MAT3( uNE, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1330:5: note: in expansion of macro 'MAT3' MAT3( uS, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1329:5: note: in expansion of macro 'MAT3' MAT3( uN, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1328:5: note: in expansion of macro 'MAT3' MAT3( uW, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1327:5: note: in expansion of macro 'MAT3' MAT3( uE, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1326:5: note: in expansion of macro 'MAT3' MAT3( uC, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1324:5: note: in expansion of macro 'MAT3' MAT3( oNW, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1323:5: note: in expansion of macro 'MAT3' MAT3( oNE, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1322:5: note: in expansion of macro 'MAT3' MAT3( oN, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1321:5: note: in expansion of macro 'MAT3' MAT3( oE, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1320:5: note: in expansion of macro 'MAT3' MAT3( oC, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1277:21: warning: variable 'nzm1' set but not used [-Wunused-but-set-variable] int nxm1, nym1, nzm1; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1277:15: warning: variable 'nym1' set but not used [-Wunused-but-set-variable] int nxm1, nym1, nzm1; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1277:9: warning: variable 'nxm1' set but not used [-Wunused-but-set-variable] int nxm1, nym1, nzm1; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1276:9: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable] int kkm1, kkp1; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1273:28: warning: variable 'kp2' set but not used [-Wunused-but-set-variable] int km1, kp1, km2, kp2; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildGd.c:1273:22: warning: variable 'km2' set but not used [-Wunused-but-set-variable] int km1, kp1, km2, kp2; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/valist.c: In function 'Valist_readXML': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/valist.c:834:17: warning: 'radius' may be used uninitialized in this function [-Wmaybe-uninitialized] Vatom_setRadius(nextAtom, radius); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/valist.c:833:17: warning: 'charge' may be used uninitialized in this function [-Wmaybe-uninitialized] Vatom_setCharge(nextAtom, charge); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/valist.c:831:48: warning: 'z' may be used uninitialized in this function [-Wmaybe-uninitialized] pos[0] = x; pos[1] = y; pos[2] = z; ~~~~~~~^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/valist.c:831:36: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized] pos[0] = x; pos[1] = y; pos[2] = z; ~~~~~~~^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/valist.c:831:24: warning: 'x' may be used uninitialized in this function [-Wmaybe-uninitialized] pos[0] = x; pos[1] = y; pos[2] = z; ~~~~~~~^~~ [ 24%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vatom.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vatom.c [ 25%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vpbe.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vpbe.c [ 27%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vcap.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vcap.c [ 28%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vclist.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vclist.c [ 29%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vstring.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vstring.c [ 30%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vparam.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vparam.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vparam.c: In function 'Vparam_readXMLFile': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vparam.c:389:69: warning: 'nalloc' may be used uninitialized in this function [-Wmaybe-uninitialized] tatoms = (Vparam_AtomData*)Vmem_malloc(thee->vmem, 2*nalloc, sizeof(Vparam_AtomData)); ~^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vparam.c:309:18: warning: 'natoms' may be used uninitialized in this function [-Wmaybe-uninitialized] int i, ires, natoms, nalloc, ralloc; ^~~~~~ [ 31%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/generic && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_generic.dir/vgreen.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c: In function 'Vgreen_coulomb_direct': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:229:31: warning: unused variable 'fz' [-Wunused-variable] double *q, qtemp, fx, fy, fz; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:229:27: warning: unused variable 'fy' [-Wunused-variable] double *q, qtemp, fx, fy, fz; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:229:23: warning: unused variable 'fx' [-Wunused-variable] double *q, qtemp, fx, fy, fz; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:229:16: warning: unused variable 'qtemp' [-Wunused-variable] double *q, qtemp, fx, fy, fz; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:229:13: warning: unused variable 'q' [-Wunused-variable] double *q, qtemp, fx, fy, fz; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c: In function 'Vgreen_coulomb': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:264:9: warning: unused variable 'iatom' [-Wunused-variable] int iatom, ipos; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:263:31: warning: unused variable 'fz' [-Wunused-variable] double *q, qtemp, fx, fy, fz; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:263:27: warning: unused variable 'fy' [-Wunused-variable] double *q, qtemp, fx, fy, fz; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:263:23: warning: unused variable 'fx' [-Wunused-variable] double *q, qtemp, fx, fy, fz; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:263:16: warning: unused variable 'qtemp' [-Wunused-variable] double *q, qtemp, fx, fy, fz; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:263:13: warning: unused variable 'q' [-Wunused-variable] double *q, qtemp, fx, fy, fz; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:262:45: warning: unused variable 'scale' [-Wunused-variable] double *apos, charge, dist, dx, dy, dz, scale; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:262:41: warning: unused variable 'dz' [-Wunused-variable] double *apos, charge, dist, dx, dy, dz, scale; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:262:37: warning: unused variable 'dy' [-Wunused-variable] double *apos, charge, dist, dx, dy, dz, scale; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:262:33: warning: unused variable 'dx' [-Wunused-variable] double *apos, charge, dist, dx, dy, dz, scale; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:262:27: warning: unused variable 'dist' [-Wunused-variable] double *apos, charge, dist, dx, dy, dz, scale; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:262:19: warning: unused variable 'charge' [-Wunused-variable] double *apos, charge, dist, dx, dy, dz, scale; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:262:13: warning: unused variable 'apos' [-Wunused-variable] double *apos, charge, dist, dx, dy, dz, scale; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:261:12: warning: unused variable 'atom' [-Wunused-variable] Vatom *atom; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c: In function 'Vgreen_coulombD_direct': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:316:16: warning: unused variable 'qtemp' [-Wunused-variable] double *q, qtemp; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:316:13: warning: unused variable 'q' [-Wunused-variable] double *q, qtemp; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c: In function 'Vgreen_coulombD': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:368:9: warning: unused variable 'iatom' [-Wunused-variable] int iatom, ipos; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:367:16: warning: unused variable 'qtemp' [-Wunused-variable] double *q, qtemp; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:367:13: warning: unused variable 'q' [-Wunused-variable] double *q, qtemp; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:366:60: warning: unused variable 'scale' [-Wunused-variable] double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:366:56: warning: unused variable 'dx' [-Wunused-variable] double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:366:52: warning: unused variable 'dz' [-Wunused-variable] double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:366:48: warning: unused variable 'dy' [-Wunused-variable] double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:366:40: warning: unused variable 'idist3' [-Wunused-variable] double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:366:33: warning: unused variable 'dist2' [-Wunused-variable] double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:366:27: warning: unused variable 'dist' [-Wunused-variable] double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:366:19: warning: unused variable 'charge' [-Wunused-variable] double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:366:13: warning: unused variable 'apos' [-Wunused-variable] double *apos, charge, dist, dist2, idist3, dy, dz, dx, scale; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:365:12: warning: unused variable 'atom' [-Wunused-variable] Vatom *atom; ^~~~ At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:525:14: warning: 'treecalc' defined but not used [-Wunused-function] VPRIVATE int treecalc(Vgreen *thee, double *xtar, double *ytar, double *ztar, ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:505:14: warning: 'treecleanup' defined but not used [-Wunused-function] VPRIVATE int treecleanup(Vgreen *thee) { ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vgreen.c:425:14: warning: 'treesetup' defined but not used [-Wunused-function] VPRIVATE int treesetup(Vgreen *thee) { ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 31%] Built target apbs_generic /usr/bin/make -f tools/python/CMakeFiles/apbslib_swig_compilation.dir/build.make tools/python/CMakeFiles/apbslib_swig_compilation.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/CMakeFiles/apbslib_swig_compilation.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/CMakeFiles/apbslib_swig_compilation.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/CMakeFiles/apbslib_swig_compilation.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/CMakeFiles/apbslib_swig_compilation.dir/depend.internal". Scanning dependencies of target apbslib_swig_compilation make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/python/CMakeFiles/apbslib_swig_compilation.dir/build.make tools/python/CMakeFiles/apbslib_swig_compilation.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 32%] Swig compile apbslib.i for python cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python && /usr/bin/cmake -E make_directory /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/CMakeFiles/_apbslib.dir cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python && /usr/bin/cmake -E touch /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON.stamp cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python && /usr/bin/cmake -E env SWIG_LIB=/usr/share/swig/3.0.12 /usr/bin/swig -python -outdir /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python -interface _apbslib -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -I/usr/include/python3.6m -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python -o /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python/apbslib.i make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 32%] Built target apbslib_swig_compilation /usr/bin/make -f contrib/iapbs/src/CMakeFiles/iapbs.dir/build.make contrib/iapbs/src/CMakeFiles/iapbs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/contrib/iapbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/contrib/iapbs/src/CMakeFiles/iapbs.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/contrib/iapbs/src/CMakeFiles/iapbs.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/contrib/iapbs/src/CMakeFiles/iapbs.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/contrib/iapbs/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/contrib/iapbs/src/CMakeFiles/iapbs.dir/depend.internal". Scanning dependencies of target iapbs make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f contrib/iapbs/src/CMakeFiles/iapbs.dir/build.make contrib/iapbs/src/CMakeFiles/iapbs.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 34%] Building C object contrib/iapbs/src/CMakeFiles/iapbs.dir/apbs_driver.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/contrib/iapbs/src && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/. -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/iapbs.dir/apbs_driver.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c: In function 'apbsdrv_': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:278:5: warning: multi-line comment [-Wcomment] // Vnm_print(1,"\nError you must provide a parameter file if you\n" \ ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:110:21: warning: unused variable 'isolve' [-Wunused-variable] int rank, size, isolve, debug, natom; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:98:11: warning: unused variable 'gm' [-Wunused-variable] void *gm[NOSH_MAXMOL]; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:97:11: warning: variable 'fetk' set but not used [-Wunused-but-set-variable] void *fetk[NOSH_MAXCALC]; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:85:14: warning: unused variable 'feparm' [-Wunused-variable] FEMparm *feparm = VNULL; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c: In function 'setupString': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:938:64: warning: implicit declaration of function 'getpid'; did you mean 'getenv'? [-Wimplicit-function-declaration] sprintf(string, "%swrite pot dx iapbs-pot-%d\n", string, getpid()); ^~~~~~ getenv /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:938:15: warning: passing argument 1 to restrict-qualified parameter aliases with argument 3 [-Wrestrict] sprintf(string, "%swrite pot dx iapbs-pot-%d\n", string, getpid()); ^~~~~~ ~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:11: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:11: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:11: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:11: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c: In function 'setupString': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:938:26: warning: 'write pot dx iapbs-pot-' directive writing 23 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(string, "%swrite pot dx iapbs-pot-%d\n", string, getpid()); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:11: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 26 and 4131 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c: In function 'getElecEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:1038:32: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] double ltenergy, gtenergy, scalar; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c: In function 'apbsdrv_': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src/apbs_driver.c:549:42: warning: 'outputformat' may be used uninitialized in this function [-Wmaybe-uninitialized] if ((pbeparm->calcenergy == PCE_COMPS) && (outputformat != OUTPUT_NULL)){ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 35%] Linking C static library ../../../lib/libiapbs.a cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/contrib/iapbs/src && /usr/bin/cmake -P CMakeFiles/iapbs.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/contrib/iapbs/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/iapbs.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libiapbs.a CMakeFiles/iapbs.dir/apbs_driver.c.o /usr/bin/ranlib ../../../lib/libiapbs.a make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 35%] Built target iapbs [ 36%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/buildPd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c: In function 'VbuildP': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:67:5: note: in expansion of macro 'MAT2' MAT2(ac, *nxf * *nyf * *nzf, 1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:66:5: note: in expansion of macro 'MAT2' MAT2(pc, *nxc * *nyc * *nzc, 1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c: In function 'VbuildP_trilin': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:101:5: note: in expansion of macro 'MAT2' MAT2(pc, *nxc * *nyc * *nzc, 1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c: In function 'VbuildPb_trilin': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:163:5: note: in expansion of macro 'MAT3' MAT3(dPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:162:5: note: in expansion of macro 'MAT3' MAT3(dPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:161:5: note: in expansion of macro 'MAT3' MAT3(dPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:160:5: note: in expansion of macro 'MAT3' MAT3(dPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:158:5: note: in expansion of macro 'MAT3' MAT3( dPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:157:5: note: in expansion of macro 'MAT3' MAT3( dPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:156:5: note: in expansion of macro 'MAT3' MAT3( dPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:155:5: note: in expansion of macro 'MAT3' MAT3( dPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:154:5: note: in expansion of macro 'MAT3' MAT3( dPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:152:5: note: in expansion of macro 'MAT3' MAT3(uPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:151:5: note: in expansion of macro 'MAT3' MAT3(uPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:150:5: note: in expansion of macro 'MAT3' MAT3(uPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:149:5: note: in expansion of macro 'MAT3' MAT3(uPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:147:5: note: in expansion of macro 'MAT3' MAT3( uPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:146:5: note: in expansion of macro 'MAT3' MAT3( uPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:145:5: note: in expansion of macro 'MAT3' MAT3( uPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:144:5: note: in expansion of macro 'MAT3' MAT3( uPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:143:5: note: in expansion of macro 'MAT3' MAT3( uPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:141:5: note: in expansion of macro 'MAT3' MAT3(oPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:140:5: note: in expansion of macro 'MAT3' MAT3(oPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:139:5: note: in expansion of macro 'MAT3' MAT3(oPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:138:5: note: in expansion of macro 'MAT3' MAT3(oPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:136:5: note: in expansion of macro 'MAT3' MAT3( oPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:135:5: note: in expansion of macro 'MAT3' MAT3( oPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:134:5: note: in expansion of macro 'MAT3' MAT3( oPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:133:5: note: in expansion of macro 'MAT3' MAT3( oPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:132:5: note: in expansion of macro 'MAT3' MAT3( oPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c: In function 'VbuildP_op7': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:212:5: note: in expansion of macro 'MAT2' MAT2(pc, *nxc * *nyc * *nzc, 1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:211:5: note: in expansion of macro 'MAT2' MAT2(ac, *nxf * *nyf * *nzf, 1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c: In function 'VbuildPb_op7': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:287:5: note: in expansion of macro 'MAT3' MAT3(dPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:286:5: note: in expansion of macro 'MAT3' MAT3(dPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:285:5: note: in expansion of macro 'MAT3' MAT3(dPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:284:5: note: in expansion of macro 'MAT3' MAT3(dPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:283:5: note: in expansion of macro 'MAT3' MAT3( dPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:282:5: note: in expansion of macro 'MAT3' MAT3( dPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:281:5: note: in expansion of macro 'MAT3' MAT3( dPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:280:5: note: in expansion of macro 'MAT3' MAT3( dPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:279:5: note: in expansion of macro 'MAT3' MAT3( dPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:278:5: note: in expansion of macro 'MAT3' MAT3(uPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:277:5: note: in expansion of macro 'MAT3' MAT3(uPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:276:5: note: in expansion of macro 'MAT3' MAT3(uPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:275:5: note: in expansion of macro 'MAT3' MAT3(uPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:274:5: note: in expansion of macro 'MAT3' MAT3( uPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:273:5: note: in expansion of macro 'MAT3' MAT3( uPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:272:5: note: in expansion of macro 'MAT3' MAT3( uPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:271:5: note: in expansion of macro 'MAT3' MAT3( uPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:270:5: note: in expansion of macro 'MAT3' MAT3( uPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:269:5: note: in expansion of macro 'MAT3' MAT3(oPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:268:5: note: in expansion of macro 'MAT3' MAT3(oPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:267:5: note: in expansion of macro 'MAT3' MAT3(oPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:266:5: note: in expansion of macro 'MAT3' MAT3(oPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:265:5: note: in expansion of macro 'MAT3' MAT3( oPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:264:5: note: in expansion of macro 'MAT3' MAT3( oPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:263:5: note: in expansion of macro 'MAT3' MAT3( oPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:262:5: note: in expansion of macro 'MAT3' MAT3( oPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:261:5: note: in expansion of macro 'MAT3' MAT3( oPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:260:5: note: in expansion of macro 'MAT3' MAT3( uC, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:259:5: note: in expansion of macro 'MAT3' MAT3( oN, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:258:5: note: in expansion of macro 'MAT3' MAT3( oE, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:257:5: note: in expansion of macro 'MAT3' MAT3( oC, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:255:32: warning: variable 'eighth' set but not used [-Wunused-but-set-variable] double won, half, quarter, eighth; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:255:23: warning: variable 'quarter' set but not used [-Wunused-but-set-variable] double won, half, quarter, eighth; ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:255:17: warning: variable 'half' set but not used [-Wunused-but-set-variable] double won, half, quarter, eighth; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:253:15: warning: variable 'kkp1' set but not used [-Wunused-but-set-variable] int kkm1, kkp1; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:253:9: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable] int kkm1, kkp1; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:252:15: warning: variable 'jjp1' set but not used [-Wunused-but-set-variable] int jjm1, jjp1; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:252:9: warning: variable 'jjm1' set but not used [-Wunused-but-set-variable] int jjm1, jjp1; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:251:15: warning: variable 'iip1' set but not used [-Wunused-but-set-variable] int iim1, iip1; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:251:9: warning: variable 'iim1' set but not used [-Wunused-but-set-variable] int iim1, iip1; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:250:16: warning: variable 'kp2' set but not used [-Wunused-but-set-variable] int km2, kp2; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:250:10: warning: variable 'km2' set but not used [-Wunused-but-set-variable] int km2, kp2; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:248:16: warning: variable 'jp2' set but not used [-Wunused-but-set-variable] int jm2, jp2; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:248:10: warning: variable 'jm2' set but not used [-Wunused-but-set-variable] int jm2, jp2; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:246:16: warning: variable 'ip2' set but not used [-Wunused-but-set-variable] int im2, ip2; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:246:10: warning: variable 'im2' set but not used [-Wunused-but-set-variable] int im2, ip2; ^~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c: In function 'VbuildP_op27': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:728:5: note: in expansion of macro 'MAT2' MAT2(pc, *nxc * *nyc * *nzc, 1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:727:5: note: in expansion of macro 'MAT2' MAT2(ac, *nxf * *nyf * *nzf, 1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c: In function 'VbuildPb_op27': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:818:7: note: in expansion of macro 'MAT3' MAT3(dPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:817:7: note: in expansion of macro 'MAT3' MAT3(dPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:816:7: note: in expansion of macro 'MAT3' MAT3(dPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:815:7: note: in expansion of macro 'MAT3' MAT3(dPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:814:7: note: in expansion of macro 'MAT3' MAT3( dPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:813:7: note: in expansion of macro 'MAT3' MAT3( dPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:812:7: note: in expansion of macro 'MAT3' MAT3( dPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:811:7: note: in expansion of macro 'MAT3' MAT3( dPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:810:7: note: in expansion of macro 'MAT3' MAT3( dPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:809:7: note: in expansion of macro 'MAT3' MAT3(uPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:808:7: note: in expansion of macro 'MAT3' MAT3(uPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:807:7: note: in expansion of macro 'MAT3' MAT3(uPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:806:7: note: in expansion of macro 'MAT3' MAT3(uPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:805:7: note: in expansion of macro 'MAT3' MAT3( uPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:804:7: note: in expansion of macro 'MAT3' MAT3( uPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:803:7: note: in expansion of macro 'MAT3' MAT3( uPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:802:7: note: in expansion of macro 'MAT3' MAT3( uPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:801:7: note: in expansion of macro 'MAT3' MAT3( uPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:800:7: note: in expansion of macro 'MAT3' MAT3(oPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:799:7: note: in expansion of macro 'MAT3' MAT3(oPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:798:7: note: in expansion of macro 'MAT3' MAT3(oPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:797:7: note: in expansion of macro 'MAT3' MAT3(oPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:796:7: note: in expansion of macro 'MAT3' MAT3( oPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:795:7: note: in expansion of macro 'MAT3' MAT3( oPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:794:7: note: in expansion of macro 'MAT3' MAT3( oPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:793:7: note: in expansion of macro 'MAT3' MAT3( oPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:792:7: note: in expansion of macro 'MAT3' MAT3( oPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:791:7: note: in expansion of macro 'MAT3' MAT3( uSW, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:790:7: note: in expansion of macro 'MAT3' MAT3( uSE, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:789:7: note: in expansion of macro 'MAT3' MAT3( uNW, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:788:7: note: in expansion of macro 'MAT3' MAT3( uNE, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:787:7: note: in expansion of macro 'MAT3' MAT3( uS, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:786:7: note: in expansion of macro 'MAT3' MAT3( uN, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:785:7: note: in expansion of macro 'MAT3' MAT3( uW, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:784:7: note: in expansion of macro 'MAT3' MAT3( uE, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:783:7: note: in expansion of macro 'MAT3' MAT3( oNW, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:782:7: note: in expansion of macro 'MAT3' MAT3( oNE, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:781:7: note: in expansion of macro 'MAT3' MAT3( uC, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:780:7: note: in expansion of macro 'MAT3' MAT3( oN, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:779:7: note: in expansion of macro 'MAT3' MAT3( oE, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:778:7: note: in expansion of macro 'MAT3' MAT3( oC, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:776:34: warning: variable 'eighth' set but not used [-Wunused-but-set-variable] double won, half, quarter, eighth; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:776:25: warning: variable 'quarter' set but not used [-Wunused-but-set-variable] double won, half, quarter, eighth; ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:776:19: warning: variable 'half' set but not used [-Wunused-but-set-variable] double won, half, quarter, eighth; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:774:17: warning: variable 'kkp1' set but not used [-Wunused-but-set-variable] int kkm1, kkp1; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:774:11: warning: variable 'kkm1' set but not used [-Wunused-but-set-variable] int kkm1, kkp1; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:773:17: warning: variable 'jjp1' set but not used [-Wunused-but-set-variable] int jjm1, jjp1; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:773:11: warning: variable 'jjm1' set but not used [-Wunused-but-set-variable] int jjm1, jjp1; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:772:17: warning: variable 'iip1' set but not used [-Wunused-but-set-variable] int iim1, iip1; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:772:11: warning: variable 'iim1' set but not used [-Wunused-but-set-variable] int iim1, iip1; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:771:18: warning: variable 'kp2' set but not used [-Wunused-but-set-variable] int km2, kp2; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:771:12: warning: variable 'km2' set but not used [-Wunused-but-set-variable] int km2, kp2; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:769:18: warning: variable 'jp2' set but not used [-Wunused-but-set-variable] int jm2, jp2; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:769:12: warning: variable 'jm2' set but not used [-Wunused-but-set-variable] int jm2, jp2; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:767:18: warning: variable 'ip2' set but not used [-Wunused-but-set-variable] int im2, ip2; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/buildPd.c:767:12: warning: variable 'im2' set but not used [-Wunused-but-set-variable] int im2, ip2; ^~~ [ 37%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/cgd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/cgd.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/cgd.c: In function 'Vcghs': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/cgd.c:99:24: warning: 'rhok1' may be used uninitialized in this function [-Wmaybe-uninitialized] beta = rhok2 / rhok1; ~~~~~~^~~~~~~ [ 38%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/gsd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c: In function 'Vgsrb': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:67:5: note: in expansion of macro 'MAT2' MAT2(ac, *nx * *ny * *nz, 1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c: In function 'Vgsrb7x': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:116:5: note: in expansion of macro 'MAT3' MAT3(oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:115:5: note: in expansion of macro 'MAT3' MAT3(uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:114:5: note: in expansion of macro 'MAT3' MAT3(oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:113:5: note: in expansion of macro 'MAT3' MAT3(oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:111:5: note: in expansion of macro 'MAT3' MAT3( r, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_r' [-Wunused-variable] int dy_##mat = dy; \ ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:111:5: note: in expansion of macro 'MAT3' MAT3( r, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_r' [-Wunused-variable] int dx_##mat = dx; \ ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:111:5: note: in expansion of macro 'MAT3' MAT3( r, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w2' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:110:5: note: in expansion of macro 'MAT3' MAT3(w2, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w2' [-Wunused-variable] int dy_##mat = dy; \ ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:110:5: note: in expansion of macro 'MAT3' MAT3(w2, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w2' [-Wunused-variable] int dx_##mat = dx; \ ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:110:5: note: in expansion of macro 'MAT3' MAT3(w2, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:109:5: note: in expansion of macro 'MAT3' MAT3(w1, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w1' [-Wunused-variable] int dy_##mat = dy; \ ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:109:5: note: in expansion of macro 'MAT3' MAT3(w1, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w1' [-Wunused-variable] int dx_##mat = dx; \ ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:109:5: note: in expansion of macro 'MAT3' MAT3(w1, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:108:5: note: in expansion of macro 'MAT3' MAT3( x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:107:5: note: in expansion of macro 'MAT3' MAT3(fc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:106:5: note: in expansion of macro 'MAT3' MAT3(cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c: In function 'Vgsrb27x': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:208:5: note: in expansion of macro 'MAT3' MAT3(uSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:207:5: note: in expansion of macro 'MAT3' MAT3(uSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:206:5: note: in expansion of macro 'MAT3' MAT3(uNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:205:5: note: in expansion of macro 'MAT3' MAT3(uNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:204:5: note: in expansion of macro 'MAT3' MAT3( uS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:203:5: note: in expansion of macro 'MAT3' MAT3( uN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:202:5: note: in expansion of macro 'MAT3' MAT3( uW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:201:5: note: in expansion of macro 'MAT3' MAT3( uE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:199:5: note: in expansion of macro 'MAT3' MAT3(oNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:198:5: note: in expansion of macro 'MAT3' MAT3(oNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:196:5: note: in expansion of macro 'MAT3' MAT3(oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:195:5: note: in expansion of macro 'MAT3' MAT3(uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:194:5: note: in expansion of macro 'MAT3' MAT3(oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:193:5: note: in expansion of macro 'MAT3' MAT3(oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:191:5: note: in expansion of macro 'MAT3' MAT3( r, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_r' [-Wunused-variable] int dy_##mat = dy; \ ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:191:5: note: in expansion of macro 'MAT3' MAT3( r, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_r' [-Wunused-variable] int dx_##mat = dx; \ ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:191:5: note: in expansion of macro 'MAT3' MAT3( r, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w2' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:190:5: note: in expansion of macro 'MAT3' MAT3(w2, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w2' [-Wunused-variable] int dy_##mat = dy; \ ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:190:5: note: in expansion of macro 'MAT3' MAT3(w2, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w2' [-Wunused-variable] int dx_##mat = dx; \ ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:190:5: note: in expansion of macro 'MAT3' MAT3(w2, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:189:5: note: in expansion of macro 'MAT3' MAT3(w1, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_w1' [-Wunused-variable] int dy_##mat = dy; \ ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:189:5: note: in expansion of macro 'MAT3' MAT3(w1, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_w1' [-Wunused-variable] int dx_##mat = dx; \ ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:189:5: note: in expansion of macro 'MAT3' MAT3(w1, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:188:5: note: in expansion of macro 'MAT3' MAT3( x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:187:5: note: in expansion of macro 'MAT3' MAT3(fc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:186:5: note: in expansion of macro 'MAT3' MAT3( cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:182:9: warning: variable 'istep' set but not used [-Wunused-but-set-variable] int istep; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:180:17: warning: variable 'k2' set but not used [-Wunused-but-set-variable] int i2, j2, k2; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:180:13: warning: variable 'j2' set but not used [-Wunused-but-set-variable] int i2, j2, k2; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:180:9: warning: variable 'i2' set but not used [-Wunused-but-set-variable] int i2, j2, k2; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:179:17: warning: variable 'k1' set but not used [-Wunused-but-set-variable] int i1, j1, k1; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:179:13: warning: variable 'j1' set but not used [-Wunused-but-set-variable] int i1, j1, k1; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/gsd.c:179:9: warning: variable 'i1' set but not used [-Wunused-but-set-variable] int i1, j1, k1; ^~ [ 40%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/matvecd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c [ 41%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgcsd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgcsd.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.h:55, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vmatvec7': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:87:5: note: in expansion of macro 'MAT2' MAT2(ac, *nx * *ny * *nz, 1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vmatvec7_1s': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:112:5: note: in expansion of macro 'MAT3' MAT3(y, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:111:5: note: in expansion of macro 'MAT3' MAT3(x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:110:5: note: in expansion of macro 'MAT3' MAT3(oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:109:5: note: in expansion of macro 'MAT3' MAT3(cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:108:5: note: in expansion of macro 'MAT3' MAT3(uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:107:5: note: in expansion of macro 'MAT3' MAT3(oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:106:5: note: in expansion of macro 'MAT3' MAT3(oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vmatvec27': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:139:5: note: in expansion of macro 'MAT2' MAT2(ac, *nx * *ny * *nz, 1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vmatvec27_1s': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:184:5: note: in expansion of macro 'MAT3' MAT3(uSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:183:5: note: in expansion of macro 'MAT3' MAT3(uSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:182:5: note: in expansion of macro 'MAT3' MAT3(uNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:181:5: note: in expansion of macro 'MAT3' MAT3(uNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:180:5: note: in expansion of macro 'MAT3' MAT3(uS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:179:5: note: in expansion of macro 'MAT3' MAT3(uN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:178:5: note: in expansion of macro 'MAT3' MAT3(uW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:177:5: note: in expansion of macro 'MAT3' MAT3(uE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:176:5: note: in expansion of macro 'MAT3' MAT3(uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:174:5: note: in expansion of macro 'MAT3' MAT3(oNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:173:5: note: in expansion of macro 'MAT3' MAT3(oNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:172:5: note: in expansion of macro 'MAT3' MAT3(oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:171:5: note: in expansion of macro 'MAT3' MAT3(oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:170:5: note: in expansion of macro 'MAT3' MAT3(oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:168:5: note: in expansion of macro 'MAT3' MAT3(y, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:167:5: note: in expansion of macro 'MAT3' MAT3(x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:166:5: note: in expansion of macro 'MAT3' MAT3(cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vnmatvec7': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:263:5: note: in expansion of macro 'MAT2' MAT2(ac, *nx * *ny * *nz, 1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vnmatvecd7_1s': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:292:5: note: in expansion of macro 'MAT3' MAT3(w1, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:291:5: note: in expansion of macro 'MAT3' MAT3( y, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:290:5: note: in expansion of macro 'MAT3' MAT3( x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:289:5: note: in expansion of macro 'MAT3' MAT3(oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:288:5: note: in expansion of macro 'MAT3' MAT3(cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable] int dy_##mat = dy; \ ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:288:5: note: in expansion of macro 'MAT3' MAT3(cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable] int dx_##mat = dx; \ ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:288:5: note: in expansion of macro 'MAT3' MAT3(cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:287:5: note: in expansion of macro 'MAT3' MAT3(uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:286:5: note: in expansion of macro 'MAT3' MAT3(oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:285:5: note: in expansion of macro 'MAT3' MAT3(oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vnmatvec27': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:322:5: note: in expansion of macro 'MAT2' MAT2(ac, *nx * *ny * *nz, 1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vnmatvecd27_1s': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:370:5: note: in expansion of macro 'MAT3' MAT3( w1, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:369:5: note: in expansion of macro 'MAT3' MAT3( y, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:368:5: note: in expansion of macro 'MAT3' MAT3( x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:367:5: note: in expansion of macro 'MAT3' MAT3( oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:366:5: note: in expansion of macro 'MAT3' MAT3( cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable] int dy_##mat = dy; \ ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:366:5: note: in expansion of macro 'MAT3' MAT3( cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable] int dx_##mat = dx; \ ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:366:5: note: in expansion of macro 'MAT3' MAT3( cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:365:5: note: in expansion of macro 'MAT3' MAT3(uSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:364:5: note: in expansion of macro 'MAT3' MAT3(uSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:363:5: note: in expansion of macro 'MAT3' MAT3(uNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:362:5: note: in expansion of macro 'MAT3' MAT3(uNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:361:5: note: in expansion of macro 'MAT3' MAT3( uS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:360:5: note: in expansion of macro 'MAT3' MAT3( uN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:359:5: note: in expansion of macro 'MAT3' MAT3( uW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:358:5: note: in expansion of macro 'MAT3' MAT3( uE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:357:5: note: in expansion of macro 'MAT3' MAT3(oNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:356:5: note: in expansion of macro 'MAT3' MAT3(oNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:355:5: note: in expansion of macro 'MAT3' MAT3( uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:354:5: note: in expansion of macro 'MAT3' MAT3( oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:353:5: note: in expansion of macro 'MAT3' MAT3( oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vmresid7': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:451:5: note: in expansion of macro 'MAT2' MAT2(ac, *nx * *ny * *nz, 1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vmresid7_1s': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:476:5: note: in expansion of macro 'MAT3' MAT3(r, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:475:5: note: in expansion of macro 'MAT3' MAT3(x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:474:5: note: in expansion of macro 'MAT3' MAT3(oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:473:5: note: in expansion of macro 'MAT3' MAT3(fc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:472:5: note: in expansion of macro 'MAT3' MAT3(cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:471:5: note: in expansion of macro 'MAT3' MAT3(uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:470:5: note: in expansion of macro 'MAT3' MAT3(oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:469:5: note: in expansion of macro 'MAT3' MAT3(oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vmresid27': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:503:5: note: in expansion of macro 'MAT2' MAT2(ac, *nx * *ny * *nz, 1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vmresid27_1s': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:550:5: note: in expansion of macro 'MAT3' MAT3(uSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:549:5: note: in expansion of macro 'MAT3' MAT3(uSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:548:5: note: in expansion of macro 'MAT3' MAT3(uNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:547:5: note: in expansion of macro 'MAT3' MAT3(uNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:546:5: note: in expansion of macro 'MAT3' MAT3(uS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:545:5: note: in expansion of macro 'MAT3' MAT3(uN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:544:5: note: in expansion of macro 'MAT3' MAT3(uW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:543:5: note: in expansion of macro 'MAT3' MAT3(uE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:542:5: note: in expansion of macro 'MAT3' MAT3(uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:540:5: note: in expansion of macro 'MAT3' MAT3(oNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:539:5: note: in expansion of macro 'MAT3' MAT3(oNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:538:5: note: in expansion of macro 'MAT3' MAT3(oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:537:5: note: in expansion of macro 'MAT3' MAT3(oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:536:5: note: in expansion of macro 'MAT3' MAT3(oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:534:5: note: in expansion of macro 'MAT3' MAT3(r, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:533:5: note: in expansion of macro 'MAT3' MAT3(x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:532:5: note: in expansion of macro 'MAT3' MAT3(fc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:531:5: note: in expansion of macro 'MAT3' MAT3(cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vnmresid7': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:623:5: note: in expansion of macro 'MAT2' MAT2(ac, *nx * *ny * *nz, 1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vnmresid7_1s': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:650:5: note: in expansion of macro 'MAT3' MAT3(w1, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:649:5: note: in expansion of macro 'MAT3' MAT3( r, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:648:5: note: in expansion of macro 'MAT3' MAT3( x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:647:5: note: in expansion of macro 'MAT3' MAT3(oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:646:5: note: in expansion of macro 'MAT3' MAT3(fc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:645:5: note: in expansion of macro 'MAT3' MAT3(cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable] int dy_##mat = dy; \ ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:645:5: note: in expansion of macro 'MAT3' MAT3(cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable] int dx_##mat = dx; \ ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:645:5: note: in expansion of macro 'MAT3' MAT3(cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:644:5: note: in expansion of macro 'MAT3' MAT3(uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:643:5: note: in expansion of macro 'MAT3' MAT3(oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:642:5: note: in expansion of macro 'MAT3' MAT3(oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vnmresid27': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:681:5: note: in expansion of macro 'MAT2' MAT2(ac, *nx * *ny * *nz, 1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vnmresid27_1s': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_w1' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:727:5: note: in expansion of macro 'MAT3' MAT3( w1, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_r' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:726:5: note: in expansion of macro 'MAT3' MAT3( r, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:725:5: note: in expansion of macro 'MAT3' MAT3( x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:724:5: note: in expansion of macro 'MAT3' MAT3(uSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:723:5: note: in expansion of macro 'MAT3' MAT3(uSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:722:5: note: in expansion of macro 'MAT3' MAT3(uNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:721:5: note: in expansion of macro 'MAT3' MAT3(uNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:720:5: note: in expansion of macro 'MAT3' MAT3( uS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:719:5: note: in expansion of macro 'MAT3' MAT3( uN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:718:5: note: in expansion of macro 'MAT3' MAT3( uW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:717:5: note: in expansion of macro 'MAT3' MAT3( uE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:716:5: note: in expansion of macro 'MAT3' MAT3(oNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:715:5: note: in expansion of macro 'MAT3' MAT3(oNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:714:5: note: in expansion of macro 'MAT3' MAT3( uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:713:5: note: in expansion of macro 'MAT3' MAT3( oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:712:5: note: in expansion of macro 'MAT3' MAT3( oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:711:5: note: in expansion of macro 'MAT3' MAT3( fc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:710:5: note: in expansion of macro 'MAT3' MAT3( cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_cc' [-Wunused-variable] int dy_##mat = dy; \ ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:710:5: note: in expansion of macro 'MAT3' MAT3( cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_cc' [-Wunused-variable] int dx_##mat = dx; \ ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:710:5: note: in expansion of macro 'MAT3' MAT3( cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:709:5: note: in expansion of macro 'MAT3' MAT3( oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vrestrc': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:786:5: note: in expansion of macro 'MAT2' MAT2(pc, *nxc * *nyc * *nzc, 1 ); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vrestrc2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:852:5: note: in expansion of macro 'MAT3' MAT3(dPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:851:5: note: in expansion of macro 'MAT3' MAT3(dPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:850:5: note: in expansion of macro 'MAT3' MAT3(dPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:849:5: note: in expansion of macro 'MAT3' MAT3(dPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:847:5: note: in expansion of macro 'MAT3' MAT3(dPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:846:5: note: in expansion of macro 'MAT3' MAT3(dPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:845:5: note: in expansion of macro 'MAT3' MAT3(dPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:844:5: note: in expansion of macro 'MAT3' MAT3(dPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:843:5: note: in expansion of macro 'MAT3' MAT3(dPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:841:5: note: in expansion of macro 'MAT3' MAT3(uPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:840:5: note: in expansion of macro 'MAT3' MAT3(uPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:839:5: note: in expansion of macro 'MAT3' MAT3(uPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:838:5: note: in expansion of macro 'MAT3' MAT3(uPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:836:5: note: in expansion of macro 'MAT3' MAT3(uPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:835:5: note: in expansion of macro 'MAT3' MAT3(uPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:834:5: note: in expansion of macro 'MAT3' MAT3(uPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:833:5: note: in expansion of macro 'MAT3' MAT3(uPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:832:5: note: in expansion of macro 'MAT3' MAT3(uPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:830:5: note: in expansion of macro 'MAT3' MAT3(oPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:829:5: note: in expansion of macro 'MAT3' MAT3(oPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:828:5: note: in expansion of macro 'MAT3' MAT3(oPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:827:5: note: in expansion of macro 'MAT3' MAT3(oPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:825:5: note: in expansion of macro 'MAT3' MAT3(oPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:824:5: note: in expansion of macro 'MAT3' MAT3(oPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:823:5: note: in expansion of macro 'MAT3' MAT3(oPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:822:5: note: in expansion of macro 'MAT3' MAT3(oPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:821:5: note: in expansion of macro 'MAT3' MAT3(oPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xout' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:819:5: note: in expansion of macro 'MAT3' MAT3(xout, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xin' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:818:5: note: in expansion of macro 'MAT3' MAT3(xin, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:816:12: warning: variable 'dimfac' set but not used [-Wunused-but-set-variable] double dimfac; ^~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.h:55, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'VinterpPMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_pc' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:920:5: note: in expansion of macro 'MAT2' MAT2(pc, *nxc * *nyc * *nzc, 1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'VinterpPMG2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:982:5: note: in expansion of macro 'MAT3' MAT3(dPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:981:5: note: in expansion of macro 'MAT3' MAT3(dPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:980:5: note: in expansion of macro 'MAT3' MAT3(dPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:979:5: note: in expansion of macro 'MAT3' MAT3(dPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:977:5: note: in expansion of macro 'MAT3' MAT3( dPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:976:5: note: in expansion of macro 'MAT3' MAT3( dPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:975:5: note: in expansion of macro 'MAT3' MAT3( dPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:974:5: note: in expansion of macro 'MAT3' MAT3( dPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_dPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:973:5: note: in expansion of macro 'MAT3' MAT3( dPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:971:5: note: in expansion of macro 'MAT3' MAT3(uPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:970:5: note: in expansion of macro 'MAT3' MAT3(uPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:969:5: note: in expansion of macro 'MAT3' MAT3(uPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:968:5: note: in expansion of macro 'MAT3' MAT3(uPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:966:5: note: in expansion of macro 'MAT3' MAT3( uPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:965:5: note: in expansion of macro 'MAT3' MAT3( uPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:964:5: note: in expansion of macro 'MAT3' MAT3( uPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:963:5: note: in expansion of macro 'MAT3' MAT3( uPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:962:5: note: in expansion of macro 'MAT3' MAT3( uPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:960:5: note: in expansion of macro 'MAT3' MAT3(oPSW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:959:5: note: in expansion of macro 'MAT3' MAT3(oPSE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:958:5: note: in expansion of macro 'MAT3' MAT3(oPNW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:957:5: note: in expansion of macro 'MAT3' MAT3(oPNE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:955:5: note: in expansion of macro 'MAT3' MAT3( oPW, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:954:5: note: in expansion of macro 'MAT3' MAT3( oPE, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:953:5: note: in expansion of macro 'MAT3' MAT3( oPS, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:952:5: note: in expansion of macro 'MAT3' MAT3( oPN, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oPC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:951:5: note: in expansion of macro 'MAT3' MAT3( oPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:78:9: warning: unused variable 'dy_oPC' [-Wunused-variable] int dy_##mat = dy; \ ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:951:5: note: in expansion of macro 'MAT3' MAT3( oPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:77:9: warning: unused variable 'dx_oPC' [-Wunused-variable] int dx_##mat = dx; \ ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:951:5: note: in expansion of macro 'MAT3' MAT3( oPC, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xout' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:949:5: note: in expansion of macro 'MAT3' MAT3(xout, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xin' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:948:5: note: in expansion of macro 'MAT3' MAT3( xin, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c: In function 'Vextrac': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xout' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:1086:5: note: in expansion of macro 'MAT3' MAT3(xout, *nxc, *nyc, *nzc); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_xin' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/matvecd.c:1085:5: note: in expansion of macro 'MAT3' MAT3( xin, *nxf, *nyf, *nzf); ^~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgcsd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgcsd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgcsd.c: In function 'Vmvcs': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgcsd.c:99:5: note: in expansion of macro 'MAT2' MAT2(iz, 50, 1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgcsd.c:303:13: warning: 'rsnrm' may be used uninitialized in this function [-Wmaybe-uninitialized] Vprtstp(*iok, *iters, rsnrm, rsden, orsnrm); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgcsd.c:562:37: warning: 'rsden' may be used uninitialized in this function [-Wmaybe-uninitialized] } while (*iters<*itmax && (rsnrm/rsden) > *errtol); ~~~~~~^~~~~~~ [ 42%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c: In function 'Vmgdriv': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:85:9: warning: unused variable 'ierror' [-Wunused-variable] int ierror = 0; ^~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.h:62, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c: In function 'Vmgdriv2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:267:5: note: in expansion of macro 'MAT2' MAT2(iz, 50, nlev); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:234:12: warning: unused variable 'tsolve' [-Wunused-variable] double tsolve = 0.0; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:233:12: warning: unused variable 'tsetupc' [-Wunused-variable] double tsetupc = 0.0; ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:232:12: warning: unused variable 'tsetupf' [-Wunused-variable] double tsetupf = 0.0; ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:231:12: warning: unused variable 'oh' [-Wunused-variable] double oh = 0.0; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:230:12: warning: unused variable 'bf' [-Wunused-variable] double bf = 0.0; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:226:12: warning: unused variable 'epsmac' [-Wunused-variable] double epsmac = 0.0; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c: In function 'Vmgsz': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:580:22: warning: 'num_narrc_oper' may be used uninitialized in this function [-Wmaybe-uninitialized] int num_nf_oper, num_narrc_oper; ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:656:13: warning: 'n_band' may be used uninitialized in this function [-Wmaybe-uninitialized] *iretot = num_narr * *narr ~~~~~~~~~~~~~~~~ + (num_nf + num_nf_oper) * *nf ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + (num_narrc + num_narrc_oper) * *narrc ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + n_band ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgdrvd.c:654:41: warning: 'num_nf_oper' may be used uninitialized in this function [-Wmaybe-uninitialized] + (num_nf + num_nf_oper) * *nf ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ [ 43%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgsubd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c: In function 'Vbuildops': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:83:5: note: in expansion of macro 'MAT2' MAT2(iz, 50, *nlev); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c: In function 'Vbuildstr': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:266:5: note: in expansion of macro 'MAT2' MAT2(iz, 50, *nlev); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c: In function 'Vbuildcopy0': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fcf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:628:5: note: in expansion of macro 'MAT3' MAT3( fcf, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_ccf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:627:5: note: in expansion of macro 'MAT3' MAT3( ccf, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_tcf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:626:5: note: in expansion of macro 'MAT3' MAT3( tcf, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a3cf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:625:5: note: in expansion of macro 'MAT3' MAT3(a3cf, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a2cf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:624:5: note: in expansion of macro 'MAT3' MAT3(a2cf, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a1cf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:623:5: note: in expansion of macro 'MAT3' MAT3(a1cf, *nxf, *nyf, *nzf); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzcf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:622:5: note: in expansion of macro 'MAT3' MAT3(gzcf, *nxf, *nyf, 4); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gycf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:621:5: note: in expansion of macro 'MAT3' MAT3(gycf, *nxf, *nzf, 4); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxcf' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:620:5: note: in expansion of macro 'MAT3' MAT3(gxcf, *nyf, *nzf, 4); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_tc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:619:5: note: in expansion of macro 'MAT3' MAT3( tc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_fc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:618:5: note: in expansion of macro 'MAT3' MAT3( fc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_cc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:617:5: note: in expansion of macro 'MAT3' MAT3( cc, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a3c' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:616:5: note: in expansion of macro 'MAT3' MAT3( a3c, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a2c' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:615:5: note: in expansion of macro 'MAT3' MAT3( a2c, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_a1c' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:614:5: note: in expansion of macro 'MAT3' MAT3( a1c, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:613:5: note: in expansion of macro 'MAT3' MAT3( gzc, *nx, *ny, 4); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gyc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:612:5: note: in expansion of macro 'MAT3' MAT3( gyc, *nx, *nz, 4); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:611:5: note: in expansion of macro 'MAT3' MAT3( gxc, *ny, *nz, 4); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c: In function 'Vbuildalg': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgsubd.c:914:5: note: in expansion of macro 'MAT2' MAT2(iz, 50, *nlev); ^~~~ [ 44%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mikpckd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vxcopy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:60:5: note: in expansion of macro 'MAT3' MAT3(y, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:59:5: note: in expansion of macro 'MAT3' MAT3(x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vxcopy_small': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:78:5: note: in expansion of macro 'MAT3' MAT3(y, *nx - 2, *ny - 2, *nz - 2); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:77:5: note: in expansion of macro 'MAT3' MAT3(x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vxcopy_large': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:99:5: note: in expansion of macro 'MAT3' MAT3(y, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:98:5: note: in expansion of macro 'MAT3' MAT3(x, *nx - 2, *ny - 2, *nz - 2); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vxaxpy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:117:5: note: in expansion of macro 'MAT3' MAT3(y, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:116:5: note: in expansion of macro 'MAT3' MAT3(x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vxnrm1': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:136:5: note: in expansion of macro 'MAT3' MAT3(x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vxnrm2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:157:5: note: in expansion of macro 'MAT3' MAT3(x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vxdot': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_y' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:182:5: note: in expansion of macro 'MAT3' MAT3(y, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:181:5: note: in expansion of macro 'MAT3' MAT3(x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vazeros': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:198:9: warning: unused variable 'nproc' [-Wunused-variable] int nproc = 1; ^~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'VfboundPMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gzc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:218:5: note: in expansion of macro 'MAT3' MAT3(gzc, *nx, *ny, 2); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gyc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:217:5: note: in expansion of macro 'MAT3' MAT3(gyc, *nx, *nz, 2); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_gxc' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:216:5: note: in expansion of macro 'MAT3' MAT3(gxc, *ny, *nz, 2); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:215:5: note: in expansion of macro 'MAT3' MAT3( x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'VfboundPMG00': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:262:5: note: in expansion of macro 'MAT3' MAT3( x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vaxrand': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:295:12: warning: variable 'xdum' set but not used [-Wunused-but-set-variable] double xdum; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:293:33: warning: variable 'iflag' set but not used [-Wunused-but-set-variable] int n, i, ii, ipara, ivect, iflag; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:293:26: warning: variable 'ivect' set but not used [-Wunused-but-set-variable] int n, i, ii, ipara, ivect, iflag; ^~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.h:58, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vxscal': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_x' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:322:5: note: in expansion of macro 'MAT3' MAT3(x, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vprtmatd': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_ac' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:337:5: note: in expansion of macro 'MAT2' MAT2(ac, *nx * *ny * *nz, 1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vprtmatd7': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:370:5: note: in expansion of macro 'MAT3' MAT3(uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:369:5: note: in expansion of macro 'MAT3' MAT3(oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:368:5: note: in expansion of macro 'MAT3' MAT3(oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:367:5: note: in expansion of macro 'MAT3' MAT3(oC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c: In function 'Vprtmatd27': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:415:5: note: in expansion of macro 'MAT3' MAT3(uSW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uSE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:414:5: note: in expansion of macro 'MAT3' MAT3(uSE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:413:5: note: in expansion of macro 'MAT3' MAT3(uNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:412:5: note: in expansion of macro 'MAT3' MAT3(uNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uS' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:411:5: note: in expansion of macro 'MAT3' MAT3( uS, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:410:5: note: in expansion of macro 'MAT3' MAT3( uN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:409:5: note: in expansion of macro 'MAT3' MAT3( uW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:408:5: note: in expansion of macro 'MAT3' MAT3( uE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNW' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:407:5: note: in expansion of macro 'MAT3' MAT3(oNW, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oNE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:406:5: note: in expansion of macro 'MAT3' MAT3(oNE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_uC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:405:5: note: in expansion of macro 'MAT3' MAT3( uC, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oN' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:404:5: note: in expansion of macro 'MAT3' MAT3( oN, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oE' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:403:5: note: in expansion of macro 'MAT3' MAT3( oE, *nx, *ny, *nz); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_oC' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mikpckd.c:402:5: note: in expansion of macro 'MAT3' MAT3( oC, *nx, *ny, *nz); ^~~~ [ 45%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mlinpckd.c [ 47%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mypdec.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mlinpckd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mlinpckd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mlinpckd.c: In function 'Vdpbsl': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_abd' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mlinpckd.c:62:5: note: in expansion of macro 'MAT2' MAT2(abd, *lda, 1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mlinpckd.c: In function 'Vdpbfa': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_abd' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mlinpckd.c:199:5: note: in expansion of macro 'MAT2' MAT2(abd, *lda, 1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c: In function 'Vmypdefinitsmpbe': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:96:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c: In function 'Vc_vecsmpbe': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:223:26: warning: variable 'ivect' set but not used [-Wunused-but-set-variable] int n, i, ii, ipara, ivect; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:223:19: warning: variable 'ipara' set but not used [-Wunused-but-set-variable] int n, i, ii, ipara, ivect; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:223:15: warning: unused variable 'ii' [-Wunused-variable] int n, i, ii, ipara, ivect; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:222:9: warning: unused variable 'iion' [-Wunused-variable] int iion; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:219:28: warning: unused variable 'fact' [-Wunused-variable] double argument, poly, fact; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:219:22: warning: unused variable 'poly' [-Wunused-variable] double argument, poly, fact; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:219:12: warning: unused variable 'argument' [-Wunused-variable] double argument, poly, fact; ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:218:29: warning: unused variable 'am_pos' [-Wunused-variable] double am_zero, am_neg, am_pos; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:218:21: warning: unused variable 'am_neg' [-Wunused-variable] double am_zero, am_neg, am_pos; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:217:18: warning: unused variable 'zu2' [-Wunused-variable] double zcf2, zu2; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:217:12: warning: unused variable 'zcf2' [-Wunused-variable] double zcf2, zu2; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:216:9: warning: unused variable 'ideg' [-Wunused-variable] int ideg; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c: In function 'Vdc_vec': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:345:9: warning: unused variable 'n' [-Wunused-variable] int n = *nx * *ny * *nz; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:344:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c: In function 'Vdc_vecpmg': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:360:28: warning: unused variable 'fact' [-Wunused-variable] double argument, poly, fact; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:360:22: warning: unused variable 'poly' [-Wunused-variable] double argument, poly, fact; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:357:9: warning: unused variable 'ideg' [-Wunused-variable] int ideg, iion; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c: In function 'Vdc_vecsmpbe': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:433:16: warning: variable 'ivect' set but not used [-Wunused-but-set-variable] int ipara, ivect; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:433:9: warning: variable 'ipara' set but not used [-Wunused-but-set-variable] int ipara, ivect; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:432:15: warning: unused variable 'ii' [-Wunused-variable] int n, i, ii; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:429:28: warning: unused variable 'fact' [-Wunused-variable] double argument, poly, fact; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:429:22: warning: unused variable 'poly' [-Wunused-variable] double argument, poly, fact; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:429:12: warning: unused variable 'argument' [-Wunused-variable] double argument, poly, fact; ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:428:29: warning: unused variable 'am_pos' [-Wunused-variable] double am_zero, am_neg, am_pos; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:428:21: warning: unused variable 'am_neg' [-Wunused-variable] double am_zero, am_neg, am_pos; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:427:18: warning: unused variable 'zu2' [-Wunused-variable] double zcf2, zu2; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:427:12: warning: unused variable 'zcf2' [-Wunused-variable] double zcf2, zu2; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:426:15: warning: unused variable 'iion' [-Wunused-variable] int ideg, iion; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mypdec.c:426:9: warning: unused variable 'ideg' [-Wunused-variable] int ideg, iion; ^~~~ [ 48%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/newtond.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newtond.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newtond.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newtond.c:56: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newtond.c: In function 'Vfnewton': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newtond.c:77:5: note: in expansion of macro 'MAT2' MAT2( iz, 50, 1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newtond.c: In function 'Vnewton': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newtond.c:187:5: note: in expansion of macro 'MAT2' MAT2(iz, 50, 1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newtond.c: In function 'Vgetjac': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newtond.c:560:5: note: in expansion of macro 'MAT2' MAT2(iz, 50, 1); ^~~~ [ 49%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/newdrvd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c: In function 'Vnewdriv': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:86:9: warning: unused variable 'maxlev' [-Wunused-variable] int maxlev; /// @todo: Doc ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:85:9: warning: unused variable 'ierror' [-Wunused-variable] int ierror; /// @todo: Doc ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c: In function 'Vnewdriv2': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:223:9: warning: unused variable 'i' [-Wunused-variable] int i; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:221:12: warning: unused variable 'orsnrm_t' [-Wunused-variable] double orsnrm_t; ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:220:12: warning: unused variable 'rsden_t' [-Wunused-variable] double rsden_t; ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:219:12: warning: unused variable 'rsnrm_t' [-Wunused-variable] double rsnrm_t; ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:218:9: warning: unused variable 'iters_t' [-Wunused-variable] int iters_t; ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:217:9: warning: unused variable 'iok_t' [-Wunused-variable] int iok_t; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:215:9: warning: unused variable 'numlev' [-Wunused-variable] int numlev; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:210:12: warning: unused variable 'tsolve' [-Wunused-variable] double tsolve; /// @todo: Doc ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:209:12: warning: unused variable 'tsetupc' [-Wunused-variable] double tsetupc; /// @todo: Doc ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:208:12: warning: unused variable 'tsetupf' [-Wunused-variable] double tsetupf; /// @todo: Doc ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:207:12: warning: unused variable 'oh' [-Wunused-variable] double oh; /// @todo: Doc ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:206:12: warning: unused variable 'bf' [-Wunused-variable] double bf; /// @todo: Doc ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:204:12: warning: variable 'omegal' set but not used [-Wunused-but-set-variable] double omegal; /// @todo: Doc ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/newdrvd.c:202:12: warning: unused variable 'epsmac' [-Wunused-variable] double epsmac; /// @todo: Doc ^~~~~~ [ 50%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/powerd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c [ 51%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/smoothd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/smoothd.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c: In function 'Vpower': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c:74:5: note: in expansion of macro 'MAT2' MAT2(iz, 50, 1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c:71:9: warning: unused variable 'skipIters' [-Wunused-variable] int skipIters = 0; ^~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c: In function 'Vipower': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c:188:5: note: in expansion of macro 'MAT2' MAT2(iz, 50, 1); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c: In function 'Vmpower': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/powerd.c:311:5: note: in expansion of macro 'MAT2' MAT2(iz, 50, 1); ^~~~ [ 52%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/pmgc && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/apbs_pmgc.dir/mgfasd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/smoothd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c: In function 'Vfmvfas': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c:79:5: note: in expansion of macro 'MAT2' MAT2(iz, 50, *nlev); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c:74:12: warning: variable 'errd' set but not used [-Wunused-but-set-variable] double errd; ^~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/smoothd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.h:57, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c:55: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c: In function 'Vmvfas': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:66:9: warning: unused variable 'dy_iz' [-Wunused-variable] int dy_##mat = dy ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c:182:5: note: in expansion of macro 'MAT2' MAT2(iz, 50, *nlev); ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c:171:33: warning: unused variable 'ivariv' [-Wunused-variable] int itmax_s, iters_s, nuuu, ivariv, mgsmoo_s, iresid; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c:359:13: warning: 'rsnrm' may be used uninitialized in this function [-Wmaybe-uninitialized] Vprtstp(*iok, *iters, rsnrm, rsden, orsnrm); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc/mgfasd.c:597:24: warning: 'rsden' may be used uninitialized in this function [-Wmaybe-uninitialized] if ((rsnrm / rsden) <= *errtol) ~~~~~~~^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 52%] Built target apbs_pmgc /usr/bin/make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/depend /usr/bin/make -f tools/python/CMakeFiles/_apbslib.dir/build.make tools/python/CMakeFiles/_apbslib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/CMakeFiles/_apbslib.dir/DependInfo.cmake --color= cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/CMakeFiles/apbs.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/CMakeFiles/_apbslib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/CMakeFiles/_apbslib.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/CMakeFiles/_apbslib.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/CMakeFiles/apbs.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/CMakeFiles/apbs.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/CMakeFiles/apbs.dir/depend.internal". Scanning dependencies of target apbs make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 54%] Linking C shared library ../lib/libapbs.so cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs.dir/link.txt --verbose=1 Scanning dependencies of target _apbslib make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/python/CMakeFiles/_apbslib.dir/build.make tools/python/CMakeFiles/_apbslib.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/cc -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libapbs.so.1 -o ../lib/libapbs.so.1 generic/CMakeFiles/apbs_generic.dir/nosh.c.o generic/CMakeFiles/apbs_generic.dir/mgparm.c.o generic/CMakeFiles/apbs_generic.dir/femparm.c.o generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o generic/CMakeFiles/apbs_generic.dir/bemparm.c.o generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o generic/CMakeFiles/apbs_generic.dir/apolparm.c.o generic/CMakeFiles/apbs_generic.dir/vacc.c.o generic/CMakeFiles/apbs_generic.dir/valist.c.o generic/CMakeFiles/apbs_generic.dir/vatom.c.o generic/CMakeFiles/apbs_generic.dir/vpbe.c.o generic/CMakeFiles/apbs_generic.dir/vcap.c.o generic/CMakeFiles/apbs_generic.dir/vclist.c.o generic/CMakeFiles/apbs_generic.dir/vstring.c.o generic/CMakeFiles/apbs_generic.dir/vparam.c.o generic/CMakeFiles/apbs_generic.dir/vgreen.c.o pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o mg/CMakeFiles/apbs_mg.dir/vgrid.c.o mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o mg/CMakeFiles/apbs_mg.dir/vopot.c.o mg/CMakeFiles/apbs_mg.dir/vpmg.c.o mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o [ 55%] Building C object tools/python/CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python && /usr/bin/cc -D_apbslib_EXPORTS -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -I/usr/include/python3.6m -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIC -fopenmp -o CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src && /usr/bin/cmake -E cmake_symlink_library ../lib/libapbs.so.1 ../lib/libapbs.so.1 ../lib/libapbs.so make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 55%] Built target apbs /usr/bin/make -f src/CMakeFiles/apbs-bin.dir/build.make src/CMakeFiles/apbs-bin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/CMakeFiles/apbs-bin.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/CMakeFiles/apbs-bin.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/CMakeFiles/apbs-bin.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/CMakeFiles/apbs-bin.dir/depend.internal". Scanning dependencies of target apbs-bin make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f src/CMakeFiles/apbs-bin.dir/build.make src/CMakeFiles/apbs-bin.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 56%] Building C object src/CMakeFiles/apbs-bin.dir/main.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/apbs-bin.dir/main.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c: In function 'getPotentials': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3601:12: warning: unused variable 'rc' [-Wunused-variable] int i, rc, nx, ny, nz; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c: In function 'getForces': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3655:31: warning: unused variable 'npholder' [-Wunused-variable] PyObject *npvalues, *np, *npholder; ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3655:26: warning: unused variable 'np' [-Wunused-variable] PyObject *npvalues, *np, *npholder; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3655:15: warning: unused variable 'npvalues' [-Wunused-variable] PyObject *npvalues, *np, *npholder; ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c:117:11: warning: unused variable 'gm' [-Wunused-variable] void *gm[NOSH_MAXMOL]; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c:116:11: warning: variable 'fetk' set but not used [-Wunused-but-set-variable] void *fetk[NOSH_MAXCALC]; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c:96:18: warning: unused variable 'geoflowparm' [-Wunused-variable] GEOFLOWparm *geoflowparm = VNULL; ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c:92:14: warning: unused variable 'feparm' [-Wunused-variable] FEMparm *feparm = VNULL; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c:86:17: warning: unused variable 'te' [-Wunused-variable] clock_t ts, te; ^~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3048: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c: At top level: In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c:70: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c:70: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c:70: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/main.c:70: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3048: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3048: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c:3048: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ [ 57%] Building C object src/CMakeFiles/apbs-bin.dir/routines.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/apbs-bin.dir/routines.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'loadDielMaps': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:296:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (ii=0; ii<(nx*ny*nz); ii++) ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:298:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' sum = sum*hx*hy*hzed; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:331:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (ii=0; ii<(nx*ny*nz); ii++) ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:333:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' sum = sum*hx*hy*hzed; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:420:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (ii=0; ii<(nx*ny*nz); ii++) ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:422:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' sum = sum*hx*hy*hzed; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:454:9: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (ii=0; ii<(nx*ny*nz); ii++) ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:456:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' sum = sum*hx*hy*hzed; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'initMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1234:12: warning: variable 'iparm' set but not used [-Wunused-but-set-variable] iparm, ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'energyMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1584:13: warning: variable 'mgparm' set but not used [-Wunused-but-set-variable] MGparm *mgparm; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writematMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1803:10: warning: variable 'mxtype' set but not used [-Wunused-but-set-variable] char mxtype[3]; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'printApolForce': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:3485:12: warning: variable 'scalar' set but not used [-Wunused-but-set-variable] scalar, ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:3484:12: warning: variable 'temp' set but not used [-Wunused-but-set-variable] double temp, ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'initAPOL': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4496:12: warning: variable 'sav' set but not used [-Wunused-but-set-variable] sav, /**< @todo document */ ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4495:12: warning: variable 'sasa' set but not used [-Wunused-but-set-variable] double sasa, /**< @todo document */ ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4489:12: warning: unused variable 'ts' [-Wunused-variable] time_t ts; /**< Temporary timing variable for debugging (PCE) */ ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'forceAPOL': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4753:13: warning: unused variable 'apos' [-Wunused-variable] *apos; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:4737:46: warning: unused variable 'ts_sub' [-Wunused-variable] time_t ts, ts_main, ts_sub; ^~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writematMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1826:34: warning: '-PE' directive writing 3 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] sprintf(writematstem, "%s-PE%d", pbeparm->writematstem,nosh->proc_rank); ^~~ In file included from /usr/include/stdio.h:873, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1038 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1840:30: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(outpath, "%s.%s", writematstem, "mat"); ^~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writedataFlat': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:1906:44: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] double conversion, ltenergy, gtenergy, scalar; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writedataXML': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2140:44: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] double conversion, ltenergy, gtenergy, scalar; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'writedataMG': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2676:30: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(outpath, "%s.%s", writestem, "dxbin"); ^~ ~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2720:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(outpath, "%s.%s", writestem, "txt"); ^~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2711:38: warning: '%s' directive writing 5 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(outpath, "%s.%s", writestem, "dx.gz"); ^~ ~~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 7 and 1030 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2694:38: warning: '%s' directive writing 4 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(outpath, "%s.%s", writestem, "mcsf"); ^~ ~~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 6 and 1029 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2687:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(outpath, "%s.%s", writestem, "ucd"); ^~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2701:38: warning: '%s' directive writing 3 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(outpath, "%s.%s", writestem, "grd"); ^~ ~~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 5 and 1028 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2666:38: warning: '%s' directive writing 2 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(outpath, "%s.%s", writestem, "dx"); ^~ ~~~~ In file included from /usr/include/stdio.h:873, from /usr/include/maloc/maloc_base.h:80, from /usr/include/maloc/maloc.h:38, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:67, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.h:64, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:54: /usr/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 4 and 1027 bytes into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'returnEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2762:12: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] scalar; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'printEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2795:12: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] scalar; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'printElecEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2863:12: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] scalar; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c: In function 'printApolEnergy': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/routines.c:2970:29: warning: 'scalar' may be used uninitialized in this function [-Wmaybe-uninitialized] gtenergy += (scalar * ((apolparm->gamma*apolparm->sasa) + ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (apolparm->press*apolparm->sav) + ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ (apolparm->wcaEnergy))); ~~~~~~~~~~~~~~~~~~~~~~~ [ 58%] Linking C executable ../bin/apbs cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs-bin.dir/link.txt --verbose=1 /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -rdynamic CMakeFiles/apbs-bin.dir/main.c.o CMakeFiles/apbs-bin.dir/routines.c.o -o ../bin/apbs -lm -lstdc++ -lmaloc -fopenmp ../lib/libapbs.so.1 make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 58%] Built target apbs-bin /usr/bin/make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/value.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/value.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/value.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/value.dir/depend.internal". Scanning dependencies of target value make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 60%] Building C object tools/mesh/CMakeFiles/value.dir/value.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/value.dir/value.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/value.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/value.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/value.c:37:9: warning: unused variable 'inorm' [-Wunused-variable] int inorm; ^~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/value.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/value.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/value.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/value.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/value.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ [ 61%] Linking C executable ../bin/value cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/value.dir/link.txt --verbose=1 /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/value.dir/value.c.o -o ../bin/value ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 61%] Built target value /usr/bin/make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/mgmesh.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/mgmesh.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/mgmesh.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/mgmesh.dir/depend.internal". Scanning dependencies of target mgmesh make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 62%] Building C object tools/mesh/CMakeFiles/mgmesh.dir/mgmesh.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/mgmesh.dir/mgmesh.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mgmesh.c [ 63%] Linking C shared library ../../lib/_apbslib.so cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_apbslib.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,_apbslib.so -o ../../lib/_apbslib.so CMakeFiles/_apbslib.dir/CMakeFiles/_apbslib.dir/apbslibPYTHON_wrap.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/pbamparm.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/pbsamparm.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/vacc.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/valist.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/vatom.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/vpbe.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/vcap.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/vclist.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/vstring.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o ../../src/generic/CMakeFiles/apbs_generic.dir/vgreen.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/buildPd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/cgd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/gsd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/matvecd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/mgcsd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/mgsubd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/mikpckd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/mypdec.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/newdrvd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/powerd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/smoothd.c.o ../../src/pmgc/CMakeFiles/apbs_pmgc.dir/mgfasd.c.o ../../src/mg/CMakeFiles/apbs_mg.dir/vgrid.c.o ../../src/mg/CMakeFiles/apbs_mg.dir/vmgrid.c.o ../../src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o ../../src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o ../../src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o ../../src/CMakeFiles/apbs_routines.dir/routines.c.o -lm -lstdc++ -lmaloc -fopenmp /usr/lib64/libpython3.6m.so In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mgmesh.c:10: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mgmesh.c:10: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mgmesh.c:10: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mgmesh.c:10: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ [ 64%] Linking C executable ../bin/mgmesh cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mgmesh.dir/link.txt --verbose=1 /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mgmesh.dir/mgmesh.c.o -o ../bin/mgmesh ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python && /usr/bin/cmake -E copy /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/apbslib.py /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/../pdb2pqr/pdb2pka cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python && /usr/bin/cmake -E copy /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/lib/_apbslib.so /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/../pdb2pqr/pdb2pka make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 64%] Built target mgmesh /usr/bin/make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/depend [ 64%] Built target _apbslib make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/dxmath.dir/DependInfo.cmake --color= /usr/bin/make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/mergedx.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/dxmath.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/dxmath.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/dxmath.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/mergedx.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/mergedx.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/mergedx.dir/depend.internal". Scanning dependencies of target dxmath Scanning dependencies of target mergedx make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/build make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 65%] Building C object tools/mesh/CMakeFiles/dxmath.dir/dxmath.c.o [ 67%] Building C object tools/mesh/CMakeFiles/mergedx.dir/mergedx.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/mergedx.dir/mergedx.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx.c cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/dxmath.dir/dxmath.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dxmath.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dxmath.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dxmath.c:41:10: warning: unused variable 'format' [-Wunused-variable] char format[VMAX_BUFSIZE]; ^~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dxmath.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dxmath.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dxmath.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dxmath.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dxmath.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx.c:81:13: warning: 'nz' may be used uninitialized in this function [-Wmaybe-uninitialized] mgrid = Vgrid_ctor(nx, ny, nz, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, VNULL); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx.c:81:13: warning: 'ny' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx.c:81:13: warning: 'nx' may be used uninitialized in this function [-Wmaybe-uninitialized] [ 68%] Linking C executable ../bin/dxmath cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/dxmath.dir/link.txt --verbose=1 /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/dxmath.dir/dxmath.c.o -o ../bin/dxmath ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 68%] Built target dxmath /usr/bin/make -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/smooth.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/smooth.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/smooth.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/smooth.dir/depend.internal". Scanning dependencies of target smooth make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/smooth.dir/build.make tools/mesh/CMakeFiles/smooth.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 69%] Building C object tools/mesh/CMakeFiles/smooth.dir/smooth.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/smooth.dir/smooth.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/smooth.c [ 70%] Linking C executable ../bin/mergedx cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mergedx.dir/link.txt --verbose=1 /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mergedx.dir/mergedx.c.o -o ../bin/mergedx ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/smooth.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/smooth.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/smooth.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/smooth.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 70%] Built target mergedx /usr/bin/make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/similarity.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/similarity.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/similarity.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/similarity.dir/depend.internal". Scanning dependencies of target similarity make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/smooth.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/smooth.c:163:8: warning: 'format' may be used uninitialized in this function [-Wmaybe-uninitialized] if (format == VDF_DX) { ^ [ 71%] Building C object tools/mesh/CMakeFiles/similarity.dir/similarity.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/similarity.dir/similarity.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c [ 72%] Linking C executable ../bin/smooth cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/smooth.dir/link.txt --verbose=1 /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/smooth.dir/smooth.c.o -o ../bin/smooth ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c:13: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 72%] Built target smooth /usr/bin/make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/multivalue.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/multivalue.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/multivalue.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/multivalue.dir/depend.internal". Scanning dependencies of target multivalue make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 74%] Building C object tools/mesh/CMakeFiles/multivalue.dir/multivalue.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/multivalue.dir/multivalue.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/multivalue.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/similarity.c:422:10: warning: 'format' may be used uninitialized in this function [-Wmaybe-uninitialized] if (!readGrid(&scalar1, scalar1Path, format)) { ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/multivalue.c:46: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/multivalue.c:46: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/multivalue.c:46: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/multivalue.c:46: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ [ 75%] Linking C executable ../bin/multivalue cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/multivalue.dir/link.txt --verbose=1 /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/multivalue.dir/multivalue.c.o -o ../bin/multivalue ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp [ 76%] Linking C executable ../bin/similarity cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/similarity.dir/link.txt --verbose=1 /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/similarity.dir/similarity.c.o -o ../bin/similarity ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 76%] Built target multivalue /usr/bin/make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/benchmark.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/benchmark.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/benchmark.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/benchmark.dir/depend.internal". Scanning dependencies of target benchmark make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 77%] Building C object tools/mesh/CMakeFiles/benchmark.dir/benchmark.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/benchmark.dir/benchmark.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 77%] Built target similarity /usr/bin/make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend.internal". /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:28:12: warning: unused variable 'grid' [-Wunused-variable] Vgrid *grid; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:18:58: warning: unused variable 'sum' [-Wunused-variable] double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:18:51: warning: unused variable 'value' [-Wunused-variable] double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:18:44: warning: unused variable 'pt' [-Wunused-variable] double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:18:38: warning: variable 'zmin' set but not used [-Wunused-but-set-variable] double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:18:32: warning: variable 'ymin' set but not used [-Wunused-but-set-variable] double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:18:26: warning: variable 'xmin' set but not used [-Wunused-but-set-variable] double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:18:20: warning: variable 'hzed' set but not used [-Wunused-but-set-variable] double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; ^~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:18:16: warning: variable 'hx' set but not used [-Wunused-but-set-variable] double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:18:12: warning: variable 'hy' set but not used [-Wunused-but-set-variable] double hy, hx, hzed, xmin, ymin, zmin, pt[3], value, sum, dtmp; ^~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:17:27: warning: unused variable 'k' [-Wunused-variable] int nx, ny, nz, i, j, k, itmp; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:17:24: warning: unused variable 'j' [-Wunused-variable] int nx, ny, nz, i, j, k, itmp; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:17:21: warning: unused variable 'i' [-Wunused-variable] int nx, ny, nz, i, j, k, itmp; ^ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ Scanning dependencies of target uhbd_asc2bin In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/benchmark.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 78%] Building C object tools/mesh/CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c [ 80%] Linking C executable ../bin/benchmark cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/benchmark.dir/link.txt --verbose=1 /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/benchmark.dir/benchmark.c.o -o ../bin/benchmark ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:3: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/vmatrix.h:79:9: warning: unused variable 'dz_grid' [-Wunused-variable] int dz_##mat = dz ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:24:5: note: in expansion of macro 'MAT3' MAT3(grid, MXGRD, MXGRD, MXGRD); ^~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:3: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:3: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:3: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:3: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:30:5: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%s", flnm); ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:42:5: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result] scanf("%s", newfile); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:54:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%s", title); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:57:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%lf", &scale); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:60:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%lf", &dum2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:63:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%d", &grdflg); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:66:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%d", &idum2); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:69:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%d", &km); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:72:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%d", &one); ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:75:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%d", &km); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:78:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%d", &im); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:81:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%d", &jm); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:84:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%d", &km); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:87:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%lf", &h); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:90:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%lf", &ox); ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:93:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%lf", &oy); ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:96:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%lf", &oz); ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:99:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%lf", &dum3); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:102:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%lf", &dum4); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:105:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%lf", &dum5); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:108:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%lf", &dum6); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:111:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%lf", &dum7); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:114:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%lf", &dum8); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:117:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%d", &idum3); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:120:5: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%d", &idum4); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:125:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%d", &kk); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:128:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%d", &im); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:131:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%d", &jm); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/uhbd_asc2bin.c:138:17: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(inFile, "%lf", RAT3(grid, i, j, k)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 80%] Built target benchmark /usr/bin/make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/analysis.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/analysis.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/analysis.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/analysis.dir/depend.internal". Scanning dependencies of target analysis make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 81%] Linking C executable ../bin/uhbd_asc2bin cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/uhbd_asc2bin.dir/link.txt --verbose=1 [ 82%] Building C object tools/mesh/CMakeFiles/analysis.dir/analysis.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/analysis.dir/analysis.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -o ../bin/uhbd_asc2bin ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:14: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:14: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:14: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:14: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 82%] Built target uhbd_asc2bin /usr/bin/make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/dx2mol.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/dx2mol.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/dx2mol.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/dx2mol.dir/depend.internal". Scanning dependencies of target dx2mol make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:292:5: warning: 'minG2pt[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] Vnm_print(1, "Min gradient-squared value location = (%4.3f, %4.3f, %4.3f)\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ minG2pt[0], minG2pt[1], minG2pt[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:292:5: warning: 'minG2pt[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:292:5: warning: 'minG2pt[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:284:5: warning: 'minSpt[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] Vnm_print(1, "Min scalar value location = (%4.3f, %4.3f, %4.3f)\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ minSpt[0], minSpt[1], minSpt[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:288:5: warning: 'maxG2pt[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] Vnm_print(1, "Max gradient-squared value location = (%4.3f, %4.3f, %4.3f)\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ maxG2pt[0], maxG2pt[1], maxG2pt[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:288:5: warning: 'maxG2pt[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:288:5: warning: 'maxG2pt[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:280:5: warning: 'maxSpt[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] Vnm_print(1, "Max scalar value location = (%4.3f, %4.3f, %4.3f)\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ maxSpt[0], maxSpt[1], maxSpt[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:280:5: warning: 'maxSpt[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:284:5: warning: 'minSpt[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] Vnm_print(1, "Min scalar value location = (%4.3f, %4.3f, %4.3f)\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ minSpt[0], minSpt[1], minSpt[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:284:5: warning: 'minSpt[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:290:5: warning: 'minG2' may be used uninitialized in this function [-Wmaybe-uninitialized] Vnm_print(1, "Min gradient-squared value = %1.12E\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ minG2); ~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:286:5: warning: 'maxG2' may be used uninitialized in this function [-Wmaybe-uninitialized] Vnm_print(1, "Max gradient-squared value = %1.12E\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ maxG2); ~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:278:5: warning: 'maxS' may be used uninitialized in this function [-Wmaybe-uninitialized] Vnm_print(1, "Max scalar value = %1.12E\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ maxS); ~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:280:5: warning: 'maxSpt[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] Vnm_print(1, "Max scalar value location = (%4.3f, %4.3f, %4.3f)\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ maxSpt[0], maxSpt[1], maxSpt[2]); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/analysis.c:182:14: warning: 'format' may be used uninitialized in this function [-Wmaybe-uninitialized] if (!readGrid(&mask, maskPath, format)) { ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 83%] Building C object tools/mesh/CMakeFiles/dx2mol.dir/dx2mol.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/dx2mol.dir/dx2mol.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2mol.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2mol.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2mol.c:28:12: warning: unused variable 'avg' [-Wunused-variable] double avg; ^~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2mol.c:19: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2mol.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2mol.c:19: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2mol.c:19: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2mol.c:19: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ [ 84%] Linking C executable ../bin/analysis cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysis.dir/link.txt --verbose=1 /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/analysis.dir/analysis.c.o -o ../bin/analysis ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp [ 85%] Linking C executable ../bin/dx2mol cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/dx2mol.dir/link.txt --verbose=1 /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/dx2mol.dir/dx2mol.c.o -o ../bin/dx2mol ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 85%] Built target analysis /usr/bin/make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/mergedx2.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/mergedx2.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/mergedx2.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/mergedx2.dir/depend.internal". Scanning dependencies of target mergedx2 make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 87%] Building C object tools/mesh/CMakeFiles/mergedx2.dir/mergedx2.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/mergedx2.dir/mergedx2.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx2.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 87%] Built target dx2mol /usr/bin/make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/dx2uhbd.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/dx2uhbd.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/dx2uhbd.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/dx2uhbd.dir/depend.internal". Scanning dependencies of target dx2uhbd make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 88%] Building C object tools/mesh/CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx2.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx2.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx2.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/mergedx2.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c:25:10: warning: unused variable 'avg' [-Wunused-variable] double avg; ^~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c:24:19: warning: unused variable 'k' [-Wunused-variable] size_t u, i, j, k, nx, ny, nz; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c:24:16: warning: unused variable 'j' [-Wunused-variable] size_t u, i, j, k, nx, ny, nz; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c:24:13: warning: unused variable 'i' [-Wunused-variable] size_t u, i, j, k, nx, ny, nz; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c:24:10: warning: unused variable 'u' [-Wunused-variable] size_t u, i, j, k, nx, ny, nz; ^ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c:17: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c:17: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c:17: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/dx2uhbd.c:17: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ [ 89%] Linking C executable ../bin/dx2uhbd cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/dx2uhbd.dir/link.txt --verbose=1 /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o -o ../bin/dx2uhbd ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 89%] Built target dx2uhbd /usr/bin/make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/del2dx.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/del2dx.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/del2dx.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/del2dx.dir/depend.internal". Scanning dependencies of target del2dx make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 90%] Building C object tools/mesh/CMakeFiles/del2dx.dir/del2dx.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/del2dx.dir/del2dx.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:45:57: warning: variable 'extent' set but not used [-Wunused-but-set-variable] float val, xmax, scale, oldmid[3], temp, xdata, range, extent, origin[3], delta[3]; ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:45:43: warning: unused variable 'xdata' [-Wunused-variable] float val, xmax, scale, oldmid[3], temp, xdata, range, extent, origin[3], delta[3]; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:45:8: warning: unused variable 'val' [-Wunused-variable] float val, xmax, scale, oldmid[3], temp, xdata, range, extent, origin[3], delta[3]; ^~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:16: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:16: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:16: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:16: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:76:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&igrid, 1, sizeof(int), pfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:89:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(buffer, 1, sizeof(char) * 10, pfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:97:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(data, tot_grid, sizeof(float), pfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:103:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&scale, 1, sizeof(float), pfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/del2dx.c:106:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(oldmid, 3, sizeof(float), pfile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 91%] Linking C executable ../bin/del2dx cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/del2dx.dir/link.txt --verbose=1 /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/del2dx.dir/del2dx.c.o -o ../bin/del2dx ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp [ 92%] Linking C executable ../bin/mergedx2 cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mergedx2.dir/link.txt --verbose=1 /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mergedx2.dir/mergedx2.c.o -o ../bin/mergedx2 ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 92%] Built target del2dx /usr/bin/make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/tensor2dx.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/tensor2dx.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/tensor2dx.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/tensor2dx.dir/depend.internal". Scanning dependencies of target tensor2dx make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 94%] Building C object tools/mesh/CMakeFiles/tensor2dx.dir/tensor2dx.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/tensor2dx.dir/tensor2dx.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 94%] Built target mergedx2 /usr/bin/make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/manip /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/manip/CMakeFiles/born.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/manip/CMakeFiles/born.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/manip/CMakeFiles/born.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/manip/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/manip/CMakeFiles/born.dir/depend.internal". Scanning dependencies of target born make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 95%] Building C object tools/manip/CMakeFiles/born.dir/born.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/manip && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/born.dir/born.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/born.c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:42:12: warning: unused variable 'index' [-Wunused-variable] int i,j,k,index,icol; ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:42:10: warning: unused variable 'k' [-Wunused-variable] int i,j,k,index,icol; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:42:8: warning: unused variable 'j' [-Wunused-variable] int i,j,k,index,icol; ^ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:14: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c: At top level: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:14: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:14: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:14: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:97:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pfile1,"%lf %lf %lf",&origin_xyz[0],&origin_xyz[1],&origin_xyz[2]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:98:2: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pfile1,"%lf %lf %lf",&gspace[0],&gspace[1],&gspace[2]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:137:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pfile2,"%i %i %i",&itmp[0],&itmp[1],&itmp[2]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:138:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pfile2,"%lf %lf %lf",&datapt[0],&tmp[1],&tmp[2]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:139:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pfile2,"%lf %lf %lf",&tmp[0],&datapt[1],&tmp[2]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:140:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pfile2,"%lf %lf %lf",&tmp[0],&tmp[1],&datapt[2]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:155:7: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pfile2,"%i %i %i",&itmp[0],&itmp[1],&itmp[2]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:156:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pfile2,"%lf %lf %lf",&datapt[0],&tmp[1],&tmp[2]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:157:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pfile2,"%lf %lf %lf",&tmp[0],&datapt[1],&tmp[2]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh/tensor2dx.c:158:3: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(pfile2,"%lf %lf %lf",&tmp[0],&tmp[1],&datapt[2]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/born.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/born.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/born.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/born.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ [ 96%] Linking C executable ../bin/tensor2dx cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/tensor2dx.dir/link.txt --verbose=1 /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/tensor2dx.dir/tensor2dx.c.o -o ../bin/tensor2dx ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 96%] Built target tensor2dx /usr/bin/make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/manip /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/manip/CMakeFiles/coulomb.dir/DependInfo.cmake --color= [ 97%] Linking C executable ../bin/born Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/manip/CMakeFiles/coulomb.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/manip/CMakeFiles/coulomb.dir/depend.internal". Dependee "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/manip/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/manip/CMakeFiles/coulomb.dir/depend.internal". cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/manip && /usr/bin/cmake -E cmake_link_script CMakeFiles/born.dir/link.txt --verbose=1 Scanning dependencies of target coulomb make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/build /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/born.dir/born.c.o -o ../bin/born ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 98%] Building C object tools/manip/CMakeFiles/coulomb.dir/coulomb.c.o cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/manip && /usr/bin/cc -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src -I/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -fPIE -fopenmp -o CMakeFiles/coulomb.dir/coulomb.c.o -c /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/coulomb.c make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/coulomb.c: In function 'main': /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/coulomb.c:20:12: warning: unused variable 'j' [-Wunused-variable] int i, j; ^ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/coulomb.c:18:34: warning: unused variable 'disp' [-Wunused-variable] double *pos, energy, zmagic, disp[3], force[3]; ^~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:77, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/coulomb.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/coulomb.c: At top level: [ 98%] Built target born /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:169:20: warning: 'GEOFLOWparm_parseVDW' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseVDW(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/geoflowparm.h:171:20: warning: 'GEOFLOWparm_parseETOL' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes GEOFLOWparm_parseETOL(GEOFLOWparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:78, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/coulomb.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:251:20: warning: 'PBAMparm_parseSalt' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseSalt(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:260:20: warning: 'PBAMparm_parseRunType' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunType(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:269:20: warning: 'PBAMparm_parseRunName' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRunName(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:278:20: warning: 'PBAMparm_parseRandorient' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseRandorient(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:287:20: warning: 'PBAMparm_parsePBCS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parsePBCS(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:296:20: warning: 'PBAMparm_parseUnits' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseUnits(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:305:20: warning: 'PBAMparm_parse3Dmap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parse3Dmap(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:314:20: warning: 'PBAMparm_parseGrid2D' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGrid2D(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:323:20: warning: 'PBAMparm_parseDX' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDX(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:332:20: warning: 'PBAMparm_parseGridPts' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseGridPts(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:341:20: warning: 'PBAMparm_parseTermcombine' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseTermcombine(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:350:20: warning: 'PBAMparm_parseDiff' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseDiff(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbamparm.h:359:20: warning: 'PBAMparm_parseXYZ' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBAMparm_parseXYZ(PBAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/nosh.h:79, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:70, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/coulomb.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:199:20: warning: 'PBSAMparm_parseTolsp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseTolsp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:208:20: warning: 'PBSAMparm_parseSurf' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseSurf(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:217:20: warning: 'PBSAMparm_parseImat' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseImat(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:226:20: warning: 'PBSAMparm_parseExp' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseExp(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic/pbsamparm.h:235:20: warning: 'PBSAMparm_parseMSMS' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes PBSAMparm_parseMSMS(PBSAMparm *thee, Vio *sock); ^~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/apbs.h:93, from /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip/coulomb.c:8: /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:811:15: warning: 'bcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:834:15: warning: 'bcolcomp2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:863:15: warning: 'bcolcomp3' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp3( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:885:15: warning: 'bcolcomp4' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcolcomp4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:910:15: warning: 'pcolcomp' declared 'static' but never defined [-Wunused-function] VPRIVATE void pcolcomp( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:933:17: warning: 'bspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline2( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:942:17: warning: 'dbspline2' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline2( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:951:17: warning: 'VFCHI4' declared 'static' but never defined [-Wunused-function] VPRIVATE double VFCHI4( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:961:17: warning: 'bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double bspline4( ^~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:970:17: warning: 'dbspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double dbspline4( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:979:17: warning: 'd2bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d2bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:988:17: warning: 'd3bspline4' declared 'static' but never defined [-Wunused-function] VPRIVATE double d3bspline4( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:998:17: warning: 'Vpmg_polarizEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_polarizEnergy( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1009:17: warning: 'Vpmg_qfEnergyPoint' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyPoint( ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1020:17: warning: 'Vpmg_qfEnergyVolume' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qfEnergyVolume( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1031:15: warning: 'Vpmg_splineSelect' declared 'static' but never defined [-Wunused-function] VPRIVATE void Vpmg_splineSelect( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1047:15: warning: 'focusFillBound' declared 'static' but never defined [-Wunused-function] VPRIVATE void focusFillBound( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1058:15: warning: 'bcfl1' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl1( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1080:15: warning: 'bcfl2' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcfl2( ^~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1109:15: warning: 'multipolebc' declared 'static' but never defined [-Wunused-function] VPRIVATE void multipolebc( ^~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1126:17: warning: 'bcfl1sp' declared 'static' but never defined [-Wunused-function] VPRIVATE double bcfl1sp( ^~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1139:15: warning: 'bcCalc' declared 'static' but never defined [-Wunused-function] VPRIVATE void bcCalc( ^~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1147:15: warning: 'fillcoCoef' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoef( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1155:15: warning: 'fillcoCoefMap' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMap( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1164:15: warning: 'fillcoCoefMol' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMol( ^~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1173:15: warning: 'fillcoCoefMolIon' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolIon( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1182:15: warning: 'fillcoCoefMolDiel' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDiel( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1191:15: warning: 'fillcoCoefMolDielNoSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielNoSmooth( ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1208:15: warning: 'fillcoCoefMolDielSmooth' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefMolDielSmooth( ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1217:15: warning: 'fillcoCoefSpline' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline( ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1226:15: warning: 'fillcoCoefSpline3' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline3( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1235:15: warning: 'fillcoCoefSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoCoefSpline4( ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1244:20: warning: 'fillcoCharge' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoCharge( ^~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1253:20: warning: 'fillcoChargeMap' declared 'static' but never defined [-Wunused-function] VPRIVATE Vrc_Codes fillcoChargeMap( ^~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1261:15: warning: 'fillcoChargeSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline1( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1269:15: warning: 'fillcoChargeSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoChargeSpline2( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1277:15: warning: 'fillcoPermanentMultipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoPermanentMultipole( ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1285:15: warning: 'fillcoInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoInducedDipole( ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1294:15: warning: 'fillcoNLInducedDipole' declared 'static' but never defined [-Wunused-function] VPRIVATE void fillcoNLInducedDipole( ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1304:15: warning: 'extEnergy' declared 'static' but never defined [-Wunused-function] VPRIVATE void extEnergy( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1317:15: warning: 'qfForceSpline1' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline1( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1327:15: warning: 'qfForceSpline2' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline2( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1337:15: warning: 'qfForceSpline4' declared 'static' but never defined [-Wunused-function] VPRIVATE void qfForceSpline4( ^~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1351:15: warning: 'zlapSolve' declared 'static' but never defined [-Wunused-function] VPRIVATE void zlapSolve( ^~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1364:15: warning: 'markSphere' declared 'static' but never defined [-Wunused-function] VPRIVATE void markSphere( ^~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1384:17: warning: 'Vpmg_qmEnergySMPBE' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergySMPBE(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg/vpmg.h:1385:17: warning: 'Vpmg_qmEnergyNONLIN' declared 'static' but never defined [-Wunused-function] VPRIVATE double Vpmg_qmEnergyNONLIN(Vpmg *thee, int extFlag); ^~~~~~~~~~~~~~~~~~~ [100%] Linking C executable ../bin/coulomb cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/manip && /usr/bin/cmake -E cmake_link_script CMakeFiles/coulomb.dir/link.txt --verbose=1 /usr/bin/cc -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fopenmp -lm -fPIC -DNDEBUG -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/coulomb.dir/coulomb.c.o -o ../bin/coulomb ../../lib/libapbs.so.1 -lm -lstdc++ -lmaloc -fopenmp make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [100%] Built target coulomb make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/CMakeFiles 0 make: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.rOuRJK + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64 ++ dirname /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64 + cd apbs-pdb2pqr-vAPBS-3.0.0 + /usr/lib/rpm/cmake-install . /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64 make: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/cmake -S/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs -B/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/CMakeFiles /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/CMakeFiles/apbs_routines.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f src/CMakeFiles/apbs_routines.dir/build.make src/CMakeFiles/apbs_routines.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Nothing to be done for 'src/CMakeFiles/apbs_routines.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 1%] Built target apbs_routines /usr/bin/make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/mg /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/mg /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/mg/CMakeFiles/apbs_mg.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f src/mg/CMakeFiles/apbs_mg.dir/build.make src/mg/CMakeFiles/apbs_mg.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Nothing to be done for 'src/mg/CMakeFiles/apbs_mg.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 7%] Built target apbs_mg /usr/bin/make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/generic /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/generic /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Nothing to be done for 'src/generic/CMakeFiles/apbs_generic.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 28%] Built target apbs_generic /usr/bin/make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src/pmgc /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/pmgc /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Nothing to be done for 'src/pmgc/CMakeFiles/apbs_pmgc.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 49%] Built target apbs_pmgc /usr/bin/make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/CMakeFiles/apbs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f src/CMakeFiles/apbs.dir/build.make src/CMakeFiles/apbs.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Nothing to be done for 'src/CMakeFiles/apbs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 50%] Built target apbs /usr/bin/make -f src/CMakeFiles/apbs-bin.dir/build.make src/CMakeFiles/apbs-bin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/src/CMakeFiles/apbs-bin.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f src/CMakeFiles/apbs-bin.dir/build.make src/CMakeFiles/apbs-bin.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Nothing to be done for 'src/CMakeFiles/apbs-bin.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 54%] Built target apbs-bin /usr/bin/make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/value.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/value.dir/build.make tools/mesh/CMakeFiles/value.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/value.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 56%] Built target value /usr/bin/make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/mgmesh.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/mgmesh.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 58%] Built target mgmesh /usr/bin/make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/dxmath.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/dxmath.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 61%] Built target dxmath /usr/bin/make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/mergedx.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Nothing to be done for 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'/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/smooth.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 65%] Built target smooth /usr/bin/make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/similarity.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/similarity.dir/build.make tools/mesh/CMakeFiles/similarity.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/similarity.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 68%] Built target similarity /usr/bin/make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/multivalue.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/multivalue.dir/build.make tools/mesh/CMakeFiles/multivalue.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/multivalue.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 70%] Built target multivalue /usr/bin/make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/benchmark.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/benchmark.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 72%] Built target benchmark /usr/bin/make -f tools/mesh/CMakeFiles/uhbd_asc2bin.dir/build.make tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh 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/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/analysis.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/analysis.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 77%] Built target analysis /usr/bin/make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/dx2mol.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/dx2mol.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 80%] Built target dx2mol /usr/bin/make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/mergedx2.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/mergedx2.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 82%] Built target mergedx2 /usr/bin/make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/dx2uhbd.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/dx2uhbd.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 84%] Built target dx2uhbd /usr/bin/make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/del2dx.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/del2dx.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 87%] Built target del2dx /usr/bin/make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/mesh/CMakeFiles/tensor2dx.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/mesh/CMakeFiles/tensor2dx.dir/build.make tools/mesh/CMakeFiles/tensor2dx.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Nothing to be done for 'tools/mesh/CMakeFiles/tensor2dx.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 89%] Built target tensor2dx /usr/bin/make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/manip /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/manip/CMakeFiles/born.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/manip/CMakeFiles/born.dir/build.make tools/manip/CMakeFiles/born.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Nothing to be done for 'tools/manip/CMakeFiles/born.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 91%] Built target born /usr/bin/make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/manip /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/manip /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/manip/CMakeFiles/coulomb.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/manip/CMakeFiles/coulomb.dir/build.make tools/manip/CMakeFiles/coulomb.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Nothing to be done for 'tools/manip/CMakeFiles/coulomb.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 94%] Built target coulomb /usr/bin/make -f tools/python/CMakeFiles/apbslib_swig_compilation.dir/build.make tools/python/CMakeFiles/apbslib_swig_compilation.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/CMakeFiles/apbslib_swig_compilation.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/python/CMakeFiles/apbslib_swig_compilation.dir/build.make tools/python/CMakeFiles/apbslib_swig_compilation.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Nothing to be done for 'tools/python/CMakeFiles/apbslib_swig_compilation.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 95%] Built target apbslib_swig_compilation /usr/bin/make -f tools/python/CMakeFiles/_apbslib.dir/build.make tools/python/CMakeFiles/_apbslib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/tools/python /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/tools/python/CMakeFiles/_apbslib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f tools/python/CMakeFiles/_apbslib.dir/build.make tools/python/CMakeFiles/_apbslib.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Nothing to be done for 'tools/python/CMakeFiles/_apbslib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [ 97%] Built target _apbslib /usr/bin/make -f contrib/iapbs/src/CMakeFiles/iapbs.dir/build.make contrib/iapbs/src/CMakeFiles/iapbs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' cd /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/apbs/contrib/iapbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/contrib/iapbs/src /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/contrib/iapbs/src/CMakeFiles/iapbs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/make -f contrib/iapbs/src/CMakeFiles/iapbs.dir/build.make contrib/iapbs/src/CMakeFiles/iapbs.dir/build make[2]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[2]: Nothing to be done for 'contrib/iapbs/src/CMakeFiles/iapbs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' [100%] Built target iapbs make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/apbs/tools/bin -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/apbs/tools/bin/coulomb -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/apbs/tools/bin/born -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/apbs/tools/bin/tensor2dx -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/apbs/tools/bin/mergedx2 -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/apbs/tools/bin/del2dx -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/apbs/tools/bin/dx2uhbd -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/apbs/tools/bin/dx2mol -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/apbs/tools/bin/analysis -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/apbs/tools/bin/uhbd_asc2bin -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/apbs/tools/bin/benchmark -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/apbs/tools/bin/similarity -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/apbs/tools/bin/multivalue -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/apbs/tools/bin/smooth -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/apbs/tools/bin/mergedx -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/apbs/tools/bin/dxmath -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/apbs/tools/bin/mgmesh -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/apbs/tools/bin/value -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/lib64/libapbs.so.1 -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/lib64/libapbs.so -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/apbscfg.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/apbs.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/routines.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/generic/nosh.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/generic/mgparm.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/generic/femparm.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/generic/pbamparm.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/generic/pbsamparm.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/generic/pbeparm.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/generic/bemparm.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/generic/geoflowparm.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/generic/apolparm.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/generic/vacc.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/generic/valist.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/generic/vatom.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/generic/vpbe.h -- Installing: 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/builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/pmgc/buildBd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/pmgc/buildGd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/pmgc/buildPd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/pmgc/cgd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/pmgc/gsd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/pmgc/matvecd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/pmgc/mgcsd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/pmgc/mgdrvd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/pmgc/mgsubd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/pmgc/mikpckd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/pmgc/mlinpckd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/pmgc/mypdec.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/pmgc/newtond.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/pmgc/newdrvd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/pmgc/powerd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/pmgc/smoothd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/pmgc/mgfasd.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/mg/vgrid.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/mg/vmgrid.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/mg/vopot.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/mg/vpmg.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/apbs/mg/vpmgp.h -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/mgmesh -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/smooth -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/dxmath -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/mergedx -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/mergedx2 -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/value -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/multivalue -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/benchmark -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/similarity -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/analysis -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/dx2mol -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/dx2uhbd -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/del2dx -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/tensor2dx -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/uhbd_asc2bin -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/coulomb -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/born -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/lib/libiapbs.a -- Installing: /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/include/iapbs/apbs_driver.h make: Leaving directory '/builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0' + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/coulomb + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/coulomb /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-coulomb + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/coulomb + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/born + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/born /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-born + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/born + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/mgmesh + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/mgmesh /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-mgmesh + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/mgmesh + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/dxmath + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/dxmath /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-dxmath + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/dxmath + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/mergedx2 + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/mergedx2 /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-mergedx2 + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/mergedx2 + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/mergedx + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/mergedx /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-mergedx + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/mergedx + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/value + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/value /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-value + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/value + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/uhbd_asc2bin + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/uhbd_asc2bin /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-uhbd_asc2bin + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/uhbd_asc2bin + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/smooth + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/smooth /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-smooth + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/smooth + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/dx2mol + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/dx2mol /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-dx2mol + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/dx2mol + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/dx2uhbd + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/dx2uhbd /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-dx2uhbd + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/dx2uhbd + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/similarity + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/similarity /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-similarity + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/similarity + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/multivalue + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/multivalue /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-multivalue + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/multivalue + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/benchmark + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/benchmark /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-benchmark + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/benchmark + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/analysis + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/analysis /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-analysis + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/analysis + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/del2dx + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/del2dx /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-del2dx + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/del2dx + for bin in /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/{coulomb,born,mgmesh,dxmath,mergedx2,mergedx,value,uhbd_asc2bin,smooth,dx2mol,dx2uhbd,similarity,multivalue,benchmark,analysis,del2dx,tensor2dx} ++ basename /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/tensor2dx + cp -p /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/tensor2dx /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-tensor2dx + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/tensor2dx + mkdir -p /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/lib64/python3.6/site-packages/apbs + install -pm 755 apbs/tools/manip/psize.py /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/lib64/python3.6/site-packages/apbs/ + pathfix.py -pn -i /usr/bin/python3.6 /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/lib64/python3.6/site-packages/apbs/psize.py /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/lib64/python3.6/site-packages/apbs/psize.py: updating + ln -s /usr/lib64/python3.6/site-packages/apbs/psize.py /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-psize.py + install -pm 755 lib/_apbslib.so /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/lib64/python3.6/site-packages/apbs/ + rm -rf /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/apbs ++ find /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64 -type f '(' -name '*.a' ')' + for i in `find /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64 -type f \( -name "*.a" \)` + rm -f /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/lib/libiapbs.a + /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m -i --build-id-seed 3.0.0-7.1.el8.ors --unique-debug-suffix -3.0.0-7.1.el8.ors.x86_64 --unique-debug-src-base apbs-3.0.0-7.1.el8.ors.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/apbs-pdb2pqr-vAPBS-3.0.0 extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-analysis extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-benchmark extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-born extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-coulomb extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-del2dx extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-dx2mol extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-dx2uhbd extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-dxmath extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-mergedx extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-mergedx2 extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-mgmesh extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-multivalue extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-similarity extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-smooth extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-tensor2dx extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-uhbd_asc2bin extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/bin/apbs-value extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/lib64/libapbs.so.1 extracting debug info from /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/lib64/python3.6/site-packages/apbs/_apbslib.so /usr/lib/rpm/sepdebugcrcfix: Updated 20 CRC32s, 0 CRC32s did match. 5169 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile '' 1 Bytecompiling .py files below /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/lib/debug/usr/lib64/python3.6 using /usr/libexec/platform-python Bytecompiling .py files below /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/lib64/python3.6 using /usr/libexec/platform-python + /usr/lib/rpm/brp-python-hardlink + PYTHON3=/usr/bin/python3.6 + /usr/lib/rpm/redhat/brp-mangle-shebangs Processing files: apbs-3.0.0-7.1.el8.ors.x86_64 Provides: apbs = 3.0.0-7.1.el8.ors apbs(x86-64) = 3.0.0-7.1.el8.ors Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libapbs.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgomp.so.1()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libmaloc.so.1()(64bit) libpthread.so.0()(64bit) libstdc++.so.6()(64bit) rtld(GNU_HASH) Processing files: apbs-tools-3.0.0-7.1.el8.ors.x86_64 Provides: apbs-tools = 3.0.0-7.1.el8.ors apbs-tools(x86-64) = 3.0.0-7.1.el8.ors Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libapbs.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgomp.so.1()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libmaloc.so.1()(64bit) libpthread.so.0()(64bit) libstdc++.so.6()(64bit) rtld(GNU_HASH) Processing files: apbs-libs-3.0.0-7.1.el8.ors.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.xU4l1G + umask 022 + cd /builddir/build/BUILD + cd apbs-pdb2pqr-vAPBS-3.0.0 + DOCDIR=/builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/doc/apbs-libs + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/doc/apbs-libs + cp -pr apbs/README.md /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/doc/apbs-libs + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.MZtokD + umask 022 + cd /builddir/build/BUILD + cd apbs-pdb2pqr-vAPBS-3.0.0 + LICENSEDIR=/builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/licenses/apbs-libs + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/licenses/apbs-libs + cp -pr apbs/LICENSE.md /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/licenses/apbs-libs + cp -pr apbs/COPYING /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/licenses/apbs-libs + cp -pr apbs/contrib/iapbs/iapbs-COPYING /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/licenses/apbs-libs + cp -pr apbs/contrib/iapbs/iapbs-LGPLv2 /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/licenses/apbs-libs + exit 0 Provides: apbs-libs = 3.0.0-7.1.el8.ors apbs-libs(x86-64) = 3.0.0-7.1.el8.ors libapbs.so.1()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/python3.6 libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libmaloc.so.1()(64bit) libpthread.so.0()(64bit) libpython3.6m.so.1.0()(64bit) libstdc++.so.6()(64bit) python(abi) = 3.6 rtld(GNU_HASH) Processing files: apbs-devel-3.0.0-7.1.el8.ors.x86_64 Provides: apbs-devel = 3.0.0-7.1.el8.ors apbs-devel(x86-64) = 3.0.0-7.1.el8.ors Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libapbs.so.1()(64bit) Processing files: apbs-doc-3.0.0-7.1.el8.ors.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.0uhtSA + umask 022 + cd /builddir/build/BUILD + cd apbs-pdb2pqr-vAPBS-3.0.0 + DOCDIR=/builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/doc/apbs-doc + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/doc/apbs-doc + cp -pr doc/_build/html /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/doc/apbs-doc + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.cVRqvy + umask 022 + cd /builddir/build/BUILD + cd apbs-pdb2pqr-vAPBS-3.0.0 + LICENSEDIR=/builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/licenses/apbs-doc + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/licenses/apbs-doc + cp -pr doc/apbs/license.rst /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64/usr/share/licenses/apbs-doc + exit 0 Provides: apbs-doc = 3.0.0-7.1.el8.ors Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: apbs-debugsource-3.0.0-7.1.el8.ors.x86_64 Provides: apbs-debugsource = 3.0.0-7.1.el8.ors apbs-debugsource(x86-64) = 3.0.0-7.1.el8.ors Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: apbs-debuginfo-3.0.0-7.1.el8.ors.x86_64 Provides: apbs-debuginfo = 3.0.0-7.1.el8.ors apbs-debuginfo(x86-64) = 3.0.0-7.1.el8.ors debuginfo(build-id) = 5e56bfab3ffe7e958c81fe8f9225143f1dbfbe41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: apbs-debugsource(x86-64) = 3.0.0-7.1.el8.ors Processing files: apbs-tools-debuginfo-3.0.0-7.1.el8.ors.x86_64 Provides: apbs-tools-debuginfo = 3.0.0-7.1.el8.ors apbs-tools-debuginfo(x86-64) = 3.0.0-7.1.el8.ors debuginfo(build-id) = 1d0efec6968dd3083f027569424a235d3166465e debuginfo(build-id) = 21c6d6f37dc91f4dbb29fbfcf8234feef23ba4eb debuginfo(build-id) = 23ecb6e062005c4edc9896e1a73f067d2f9d53af debuginfo(build-id) = 403d9dce69cb677016f865fb472990f1663c51e4 debuginfo(build-id) = 55255bfea2d21b77523213a8924ca12c5585ec39 debuginfo(build-id) = 5bf833c32ef54d6bf942cefe08ac3d6db1d0f91e debuginfo(build-id) = 6433635f03abdf8dd327150353f56c21ff4b1a8a debuginfo(build-id) = 6e36c5a030e4abdefe0aee9a18efb2ff0078afe8 debuginfo(build-id) = 98fa65575be18e2dcb5320bb37c78c4b41e0ad33 debuginfo(build-id) = ad7eac10d58324341c3d3a08820255e6282be961 debuginfo(build-id) = b534d82b0d3cdfefcbdcc8a254ef39082b616429 debuginfo(build-id) = c0c25fd9334e30d086fd44f7e12e20dceac6be48 debuginfo(build-id) = d3523ac2038bd39344bba01b269819f613cd5b54 debuginfo(build-id) = dd14d82c8b6c0b955fab54ae6fc20fa770901e59 debuginfo(build-id) = e32a9cd1807f26be95960bc2b9c6c80bea934406 debuginfo(build-id) = ee7dac88384cc6f58089a23f4b7c4ee87c799940 debuginfo(build-id) = fb72971c9cf3658e5f96ea112690cf7ea4b93ce6 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: apbs-debugsource(x86-64) = 3.0.0-7.1.el8.ors Processing files: apbs-libs-debuginfo-3.0.0-7.1.el8.ors.x86_64 Provides: apbs-libs-debuginfo = 3.0.0-7.1.el8.ors apbs-libs-debuginfo(x86-64) = 3.0.0-7.1.el8.ors debuginfo(build-id) = 82f711075842dda5c232e6c758e71f1d4db22a7b debuginfo(build-id) = 84573bb79b7c35efeb8563a44133869deb607ef5 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: apbs-debugsource(x86-64) = 3.0.0-7.1.el8.ors Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64 Wrote: /builddir/build/RPMS/apbs-3.0.0-7.1.el8.ors.x86_64.rpm Wrote: /builddir/build/RPMS/apbs-tools-3.0.0-7.1.el8.ors.x86_64.rpm Wrote: /builddir/build/RPMS/apbs-libs-3.0.0-7.1.el8.ors.x86_64.rpm Wrote: /builddir/build/RPMS/apbs-devel-3.0.0-7.1.el8.ors.x86_64.rpm Wrote: /builddir/build/RPMS/apbs-doc-3.0.0-7.1.el8.ors.noarch.rpm Wrote: /builddir/build/RPMS/apbs-debugsource-3.0.0-7.1.el8.ors.x86_64.rpm Wrote: /builddir/build/RPMS/apbs-debuginfo-3.0.0-7.1.el8.ors.x86_64.rpm Wrote: /builddir/build/RPMS/apbs-tools-debuginfo-3.0.0-7.1.el8.ors.x86_64.rpm Wrote: /builddir/build/RPMS/apbs-libs-debuginfo-3.0.0-7.1.el8.ors.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.zJApwJ + umask 022 + cd /builddir/build/BUILD + cd apbs-pdb2pqr-vAPBS-3.0.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/apbs-3.0.0-7.1.el8.ors.x86_64 + exit 0 Finish: rpmbuild apbs-3.0.0-7.1.el8.ors.src.rpm Finish: build phase for apbs-3.0.0-7.1.el8.ors.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/epel-8-x86_64-1620741126.795941/root/var/log/dnf.rpm.log /var/lib/mock/epel-8-x86_64-1620741126.795941/root/var/log/dnf.librepo.log /var/lib/mock/epel-8-x86_64-1620741126.795941/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/apbs-3.0.0-7.1.el8.ors.src.rpm) Config(child) 2 minutes 50 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run