Mock Version: 1.2.17 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/seqan.spec'], uid=1001chrootPath='/var/lib/mock/epel-7-x86_64-mockbuilder-2636/root'gid=135timeout=0printOutput=Falselogger=shell=Falseenv={'HOME': '/builddir', 'SHELL': '/bin/bash', 'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'HOSTNAME': 'mock'}user='mockbuild') Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/seqan.spec'] with env {'HOME': '/builddir', 'SHELL': '/bin/bash', 'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'HOSTNAME': 'mock'} and shell False warning: Could not canonicalize hostname: copr-builder-98468967.novalocal Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/seqan-1.4.2-24.el7.centos.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/seqan.spec'], uid=1001chrootPath='/var/lib/mock/epel-7-x86_64-mockbuilder-2636/root'gid=135timeout=0printOutput=Falselogger=shell=Falseprivate_network=Trueenv={'HOME': '/builddir', 'SHELL': '/bin/bash', 'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'HOSTNAME': 'mock'}user='mockbuild') Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/seqan.spec'] with env {'HOME': '/builddir', 'SHELL': '/bin/bash', 'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\x1b]0;\x07"', 'HOSTNAME': 'mock'} and shell False Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.6Geic9 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf seqan-1.4.2 + /usr/bin/gzip -dc /builddir/build/SOURCES/seqan-src-1.4.2.tar.gz + /usr/bin/tar -xf - + STATUS=0 + '[' 0 -ne 0 ']' + cd seqan-1.4.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #0 (seqan-docpath.patch): + echo 'Patch #0 (seqan-docpath.patch):' + /usr/bin/patch -p0 --fuzz=0 + /usr/bin/cat /builddir/build/SOURCES/seqan-docpath.patch patching file util/cmake/SeqAnBuildSystem.cmake Patch #1 (seqan-exclude_splazers_fiona_tests.patch): + echo 'Patch #1 (seqan-exclude_splazers_fiona_tests.patch):' + /usr/bin/patch -p0 --fuzz=0 + /usr/bin/cat /builddir/build/SOURCES/seqan-exclude_splazers_fiona_tests.patch patching file core/apps/splazers/CMakeLists.txt patching file core/apps/fiona/CMakeLists.txt ++ find . -perm /111 -type f '(' -name '*.h' -o -name '*.cpp' ')' + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./util/cmake/SeqAnVersion.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/include/seqan/sequence/iterator_range.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/include/seqan/math/math_rational.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/include/seqan/math/math_operators.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/include/seqan/math/math_common_factor.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/include/seqan/math.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/include/seqan/index_extras.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/demos/tutorial/mini_bowtie/solution5.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/demos/tutorial/mini_bowtie/solution4.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/demos/tutorial/mini_bowtie/solution3.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/demos/tutorial/mini_bowtie/solution2.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/demos/tutorial/mini_bowtie/solution1.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/demos/tutorial/mini_bowtie/mini_bowtie.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/demos/tutorial/first_steps/solution_6.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/demos/tutorial/first_steps/solution_5.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/demos/tutorial/first_steps/solution_4.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/demos/tutorial/first_steps/solution_3.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/demos/tutorial/first_steps/solution_2.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/demos/tutorial/first_steps/solution_1.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/demos/tutorial/first_steps/final_result.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/demos/tutorial/first_steps/code_encapsulation.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/demos/tutorial/first_steps/basic_code_detailed.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/demos/tutorial/first_steps/basic_code.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/demos/tutorial/find_motif_pms1.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/demos/tutorial/find_motif.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/apps/variant_comp/variant_comp.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/apps/variant_comp/variant_comp.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/apps/sgip/sgip_output.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/apps/sgip/sgip_base.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/apps/sgip/sgip.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/apps/sgip/sgip.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/apps/rep_sep/utils.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/apps/rep_sep/rgraph_score.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/apps/rep_sep/rgraph_heuristics.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/apps/rep_sep/rgraph_construction.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/apps/rep_sep/rgraph_base.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/apps/rep_sep/rgraph.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/apps/rep_sep/rep_sep.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/apps/rep_sep/column_scanner.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/apps/rep_sep/assembly_parser.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/apps/razers3/simulate_reads.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/apps/razers3/quality2prob.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/apps/razers3/profile_timeline.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/apps/razers3/parallel_store.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/apps/razers3/compPHSens.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/apps/bs_tools/casbar.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/apps/bs_tools/casbar.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/apps/breakpoint_calculator/parse_alignment.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/apps/breakpoint_calculator/breakpoint_counts.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/apps/breakpoint_calculator/breakpoint_calculator.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./extras/apps/breakpoint_calculator/breakpoint_calculator.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/swift_local/test_find_swift.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/store/test_store_io_bam.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/store/test_store_io.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/store/test_store.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/sequence_journaled/test_sequence_journaled.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/sequence_journaled/test_sequence_journaled.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/sequence/test_string_set.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/sequence/test_sequence_v2.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/sequence/test_sequence.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/sequence/test_segment_beta.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/parallel/test_parallel_splitting.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/parallel/test_parallel_atomic_primitives.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/parallel/test_parallel_atomic_misc.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/parallel/test_parallel_algorithms.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/parallel/test_parallel.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/index/test_sa_bwtwalk.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/index/test_index_helpers.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/index/test_index_fm_stree.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/index/test_index_fm_sparse_string.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/index/test_index_fm_right_array_binary_tree_iterator.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/index/test_index_fm_right_array_binary_tree.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/index/test_index_fm_rank_support_bit_string_iterator.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/index/test_index_fm_rank_support_bit_string.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/index/test_index_fm_rank_dictionary.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/index/test_index_fm_prefix_sum_table.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/index/test_index_fm_compressed_sa_iterator.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/index/test_index_fm_compressed_sa.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/index/test_index_fm.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/index/test_index_fm.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/index/test_crosscompare.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/tests/find/test_find_myers_banded.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/include/seqan/stream/file_stream.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/include/seqan/store/store_io_ucsc.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/include/seqan/store/store_io_gff.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/include/seqan/random/ext_MersenneTwister.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/include/seqan/platform.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/include/seqan/parallel/parallel_splitting.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/include/seqan/parallel/parallel_macros.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/include/seqan/parallel/parallel_atomic_primitives.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/include/seqan/parallel/parallel_atomic_misc.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/include/seqan/parallel.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/include/seqan/misc/misc_name_store_cache.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/include/seqan/index/shape_threshold.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/include/seqan/index/pizzachili_api.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/include/seqan/index/index_fm_sparse_string.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/include/seqan/index/index_fm_right_array_binary_tree_iterator.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/include/seqan/index/index_fm_right_array_binary_tree.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/include/seqan/index/index_fm_rank_support_bit_string_iterator.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/include/seqan/index/index_fm_rank_support_bit_string.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/include/seqan/index/index_fm_rank_dictionary_wt.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/include/seqan/index/index_fm_prefix_sum_table.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/include/seqan/index/index_fm_lf_table.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/include/seqan/index/index_fm_compressed_sa_iterator.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/include/seqan/index/index_fm_compressed_sa.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/include/seqan/index/find_pigeonhole.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/include/seqan/bam_io/cigar.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/string_sets/assignment_4_workshop_solution.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/string_sets/assignment_3b_workshop_solution.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/string_sets/assignment_3_workshop_solution.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/string_sets/assignment_2_solution.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/string_sets/assignment_1_solution.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/sequences_in_depth/assignment_exact_generous_solution.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/sequences/string_assignment_1_solution.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/sequences/segments_assignment_solution.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/sequences/segments_assignment_hint.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/sequences/segments_assignment_2_solution.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/sequences/lexical_assignment_solution.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/rnaseq/genequant_solution5.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/rnaseq/genequant_solution4.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/rnaseq/genequant_solution3.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/rnaseq/genequant_solution2.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/rnaseq/genequant_solution1.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/rnaseq/genequant_assignment5.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/rnaseq/genequant_assignment4.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/rnaseq/genequant_assignment3.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/rnaseq/genequant_assignment2.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/rnaseq/genequant_assignment1.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/read_mapping/minimapper.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/iterators/sequence_iterator_demo.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/iterators/iterators_assignment_4_workshop_solution.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/iterators/iterators_assignment_3_workshop_solution.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/iterators/iterators_assignment_2_solution.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/iterators/iterators_assignment_1_solution.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/index/iterator_solution2.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/index/iterator_solution1.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/index/indices_assignment_2.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/index/indices_assignment_1.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/index/index_search2.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/index/index_search.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/graph/graph_hmm.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/graph/graph_dijkstra.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/graph/graph_algo_scc.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/find/find_index_multiple.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/find/find_assignment3.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/find/find_assignment1.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/annotation_store/assignment_4_solution.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/annotation_store/assignment_3_solution.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/annotation_store/assignment_2_solution.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/annotation_store/assignment_1_solution.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/annotation_store/assignment_1_hint.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/alignments/alignment_pairwise_global_assignment2.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/alignments/alignment_pairwise_global_assignment1.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/alignments/alignment_pairwise_global2.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/alignments/alignment_pairwise_global.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/alignments/alignment_gaps.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/tutorial/alignments/alignment2_align.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/sequence/string2.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/sam2svg.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/howto/filter_similar_sequences.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/gff2gtf.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/demos/annotation_converter.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/apps/stellar/stellar_types.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/apps/stellar/stellar_output.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/apps/stellar/stellar.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/apps/snp_store/snp_store.h + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/apps/snp_store/snp_store.cpp + for i in '`find . -perm /111 -type f \( -name "*.h" -o -name "*.cpp" \)`' + chmod a-x ./core/apps/micro_razers/outputFormat.h + cp -p extras/apps/rep_sep/LICENSE LGPLv3+.txt + cp -p core/apps/rabema/LICENSE GPLv3+.txt + cp -p LICENSE BSD.txt + cp -p extras/apps/seqan_flexbar/INFO extras/apps/seqan_flexbar/README + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.DsvrvA + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + mkdir -p build/Release + pushd build/Release ~/build/BUILD/seqan-1.4.2/build/Release ~/build/BUILD/seqan-1.4.2 + SEQAN_OPT_FLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now' + export 'CXXFLAGS=-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now' + CXXFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now' + export 'LDFLAGS=-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now' + LDFLAGS='-Wl,-z,relro -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -fPIC -Wl,-z,now' + cmake '-DCMAKE_CXX_FLAGS_RELEASE:STRING=-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now' -DCMAKE_INSTALL_PREFIX:PATH=/usr -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_BUILD_TYPE:STRING=Release -DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_APPS -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_APP_VERSION:STRING=1.4.2 -DZLIB_INCLUDE_DIR:PATH=/usr/include '-DZLIB_LIBRARY:FILEPATH=-L/usr/lib64 -lz' -DBZIP2_INCLUDE_DIR:PATH=/usr/include '-DBZIP2_LIBRARY:FILEPATH=-L/usr/lib64 -lbz2' -DLEMON_INCLUDE_DIR:PATH=/usr/include '-DLEMON_LIBRARY:FILEPATH=-L/usr/lib64 -lemon' -DBoost_INCLUDE_DIR:PATH=/usr/include -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python2 -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE ../.. -- The C compiler identification is GNU 4.8.5 -- The CXX compiler identification is GNU 4.8.5 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Initializing SeqAn Build System... -- No revision system found. -- Repository date not determined. -- Repository revision not determined. -- Configuring core -- Configuring core/apps -- Configuring core/apps/tree_recon -- Looking for include file execinfo.h -- Looking for include file execinfo.h - found -- Determined version is 1.4.2 -- Found PythonInterp: /usr/bin/python2 (found version "2.7.5") -- Configuring core/apps/stellar -- Configuring core/apps/splazers -- Configuring core/apps/snp_store -- Boost version: 1.53.0 -- Configuring core/apps/seqcons -- Configuring core/apps/seqan_tcoffee -- Configuring core/apps/samcat -- Configuring core/apps/sam2matrix -- Try OpenMP C flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Try OpenMP CXX flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Configuring core/apps/sak -- Configuring core/apps/razers2 -- Configuring core/apps/razers -- Configuring core/apps/rabema -- Configuring core/apps/pair_align -- Configuring core/apps/micro_razers -- Configuring core/apps/mason -- Configuring core/apps/fiona -- Boost version: 1.53.0 -- Configuring core/apps/dfi -- Configuring extras -- Configuring extras/apps -- Configuring extras/apps/variant_comp -- Configuring extras/apps/sgip -- Performing Test CXX11_FOUND -- Performing Test CXX11_FOUND - Success -- Configuring extras/apps/seqan_flexbar -- Looking for BZ2_bzCompressInit in -L/usr/lib64 -lbz2 -- Looking for BZ2_bzCompressInit in -L/usr/lib64 -lbz2 - not found -- Configuring extras/apps/searchjoin -- Configuring extras/apps/rep_sep -- Configuring extras/apps/razers3 -- Configuring extras/apps/param_chooser -- Configuring sandbox/jagla/apps/ngs_roi -- Configuring extras/apps/mason2 -- Configuring extras/apps/insegt -- Configuring extras/apps/gustaf -- Configuring extras/apps/fx_tools -- Configuring extras/apps/bs_tools -- Boost version: 1.53.0 -- Configuring extras/apps/breakpoint_calculator -- Configuring extras/apps/alf -- Configuring docs -- Configuring manual -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE) -- Sphinx not found, not building sphinx manual as a test. -- Configuring sandbox -- Configuring util/py_lib -- adding nosetests for seqan.dox -- Found Java: /bin/java (found version "1.8.0.77") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_SKIP_INSTALL_RPATH SEQAN_APP_VERSION SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/seqan-1.4.2/build/Release + make all /usr/bin/cmake -H/builddir/build/BUILD/seqan-1.4.2 -B/builddir/build/BUILD/seqan-1.4.2/build/Release --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core /builddir/build/BUILD/seqan-1.4.2/build/Release/core/CMakeFiles/seqan_core.dir/DependInfo.cmake --color= Scanning dependencies of target seqan_core make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `core/CMakeFiles/seqan_core.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 0%] Built target seqan_core make -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake --color= Scanning dependencies of target tree_recon make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 99 [ 2%] Building CXX object core/apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/tree_recon.dir/tree_recon.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp Linking CXX executable ../../../bin/tree_recon cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon && /usr/bin/cmake -E cmake_link_script CMakeFiles/tree_recon.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/tree_recon.dir/tree_recon.cpp.o -o ../../../bin/tree_recon -rdynamic -lrt make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 99 [ 2%] Built target tree_recon make -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake --color= Scanning dependencies of target stellar make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 2%] Building CXX object core/apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/stellar.dir/stellar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp Linking CXX executable ../../../bin/stellar cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar && /usr/bin/cmake -E cmake_link_script CMakeFiles/stellar.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/stellar.dir/stellar.cpp.o -o ../../../bin/stellar -rdynamic -lrt make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 2%] Built target stellar make -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake --color= Scanning dependencies of target splazers make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 95 [ 4%] Building CXX object core/apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/splazers.dir/splazers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp Linking CXX executable ../../../bin/splazers cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers && /usr/bin/cmake -E cmake_link_script CMakeFiles/splazers.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/splazers.dir/splazers.cpp.o -o ../../../bin/splazers -rdynamic -lrt make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 95 [ 4%] Built target splazers make -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake --color= Scanning dependencies of target snp_store make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 94 [ 6%] Building CXX object core/apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/snp_store.dir/snp_store.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp Linking CXX executable ../../../bin/snp_store cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store && /usr/bin/cmake -E cmake_link_script CMakeFiles/snp_store.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/snp_store.dir/snp_store.cpp.o -o ../../../bin/snp_store -rdynamic -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 94 [ 6%] Built target snp_store make -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons/CMakeFiles/seqcons.dir/DependInfo.cmake --color= Scanning dependencies of target seqcons make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 6%] Building CXX object core/apps/seqcons/CMakeFiles/seqcons.dir/seqcons.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/seqcons.dir/seqcons.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp Linking CXX executable ../../../bin/seqcons cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqcons.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/seqcons.dir/seqcons.cpp.o -o ../../../bin/seqcons -rdynamic -lrt make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 6%] Built target seqcons make -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake --color= Scanning dependencies of target seqan_tcoffee make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 90 [ 8%] Building CXX object core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp Linking CXX executable ../../../bin/seqan_tcoffee cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_tcoffee.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -o ../../../bin/seqan_tcoffee -rdynamic -lrt make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 90 [ 8%] Built target seqan_tcoffee make -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake --color= Scanning dependencies of target samcat make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 8%] Building CXX object core/apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/samcat.dir/samcat.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp Linking CXX executable ../../../bin/samcat cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat && /usr/bin/cmake -E cmake_link_script CMakeFiles/samcat.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/samcat.dir/samcat.cpp.o -o ../../../bin/samcat -rdynamic -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 8%] Built target samcat make -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake --color= Scanning dependencies of target sam2matrix make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 87 [ 10%] Building CXX object core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp Linking CXX executable ../../../bin/sam2matrix cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam2matrix.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -o ../../../bin/sam2matrix -rdynamic -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 87 [ 10%] Built target sam2matrix make -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake --color= Scanning dependencies of target sak make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 85 [ 12%] Building CXX object core/apps/sak/CMakeFiles/sak.dir/sak.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/sak.dir/sak.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp Linking CXX executable ../../../bin/sak cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && /usr/bin/cmake -E cmake_link_script CMakeFiles/sak.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/sak.dir/sak.cpp.o -o ../../../bin/sak -rdynamic -lrt make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 85 [ 12%] Built target sak make -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2/CMakeFiles/razers2.dir/DependInfo.cmake --color= Scanning dependencies of target razers2 make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 12%] Building CXX object core/apps/razers2/CMakeFiles/razers2.dir/razers.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/razers2.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 79 [ 14%] Building CXX object core/apps/razers2/CMakeFiles/razers2.dir/param_tabs.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/razers2.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/param_tabs.cpp Linking CXX executable ../../../bin/razers2 cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers2.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/razers2.dir/razers.cpp.o CMakeFiles/razers2.dir/param_tabs.cpp.o -o ../../../bin/razers2 -rdynamic -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 79 [ 14%] Built target razers2 make -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake --color= Scanning dependencies of target razers make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 77 [ 16%] Building CXX object core/apps/razers/CMakeFiles/razers.dir/razers.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/razers.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 78 [ 18%] Building CXX object core/apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/razers.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/param_tabs.cpp Linking CXX executable ../../../bin/razers cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/razers.dir/razers.cpp.o CMakeFiles/razers.dir/param_tabs.cpp.o -o ../../../bin/razers -rdynamic -lrt make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 77 78 [ 18%] Built target razers make -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake --color= Scanning dependencies of target rabema_build_gold_standard make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 75 [ 20%] Building CXX object core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp Linking CXX executable ../../../bin/rabema_build_gold_standard cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_build_gold_standard.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -o ../../../bin/rabema_build_gold_standard -rdynamic -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 75 [ 20%] Built target rabema_build_gold_standard make -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake --color= Scanning dependencies of target rabema_do_search make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 20%] Building CXX object core/apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/rabema_do_search.dir/do_search.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp Linking CXX executable ../../../bin/rabema_do_search cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_do_search.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/rabema_do_search.dir/do_search.cpp.o -o ../../../bin/rabema_do_search -rdynamic -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 20%] Built target rabema_do_search make -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake --color= Scanning dependencies of target rabema_evaluate make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 76 [ 22%] Building CXX object core/apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp Linking CXX executable ../../../bin/rabema_evaluate cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_evaluate.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -o ../../../bin/rabema_evaluate -rdynamic -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 76 [ 22%] Built target rabema_evaluate make -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake --color= Scanning dependencies of target rabema_prepare_sam make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 22%] Building CXX object core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp Linking CXX executable ../../../bin/rabema_prepare_sam cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_prepare_sam.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -o ../../../bin/rabema_prepare_sam -rdynamic -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 22%] Built target rabema_prepare_sam make -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake --color= Scanning dependencies of target pair_align make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 23 [ 25%] Building CXX object core/apps/pair_align/CMakeFiles/pair_align.dir/pair_align.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/pair_align.dir/pair_align.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp Linking CXX executable ../../../bin/pair_align cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align && /usr/bin/cmake -E cmake_link_script CMakeFiles/pair_align.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/pair_align.dir/pair_align.cpp.o -o ../../../bin/pair_align -rdynamic -lrt make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 23 [ 25%] Built target pair_align make -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake --color= Scanning dependencies of target micro_razers make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 25%] Building CXX object core/apps/micro_razers/CMakeFiles/micro_razers.dir/micro_razers.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/micro_razers.dir/micro_razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 22 [ 27%] Building CXX object core/apps/micro_razers/CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/param_tabs.cpp Linking CXX executable ../../../bin/micro_razers cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers && /usr/bin/cmake -E cmake_link_script CMakeFiles/micro_razers.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/micro_razers.dir/micro_razers.cpp.o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -o ../../../bin/micro_razers -rdynamic -lrt make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 22 [ 27%] Built target micro_razers make -f core/apps/mason/CMakeFiles/mason.dir/build.make core/apps/mason/CMakeFiles/mason.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason/CMakeFiles/mason.dir/DependInfo.cmake --color= Scanning dependencies of target mason make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/mason/CMakeFiles/mason.dir/build.make core/apps/mason/CMakeFiles/mason.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 10 [ 29%] Building CXX object core/apps/mason/CMakeFiles/mason.dir/mason.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/mason.dir/mason.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp Linking CXX executable ../../../bin/mason cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/mason.dir/mason.cpp.o -o ../../../bin/mason -rdynamic -lrt make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 10 [ 29%] Built target mason make -f core/apps/fiona/CMakeFiles/compute_gain.dir/build.make core/apps/fiona/CMakeFiles/compute_gain.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/compute_gain.dir/DependInfo.cmake --color= Scanning dependencies of target compute_gain make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/fiona/CMakeFiles/compute_gain.dir/build.make core/apps/fiona/CMakeFiles/compute_gain.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 4 [ 31%] Building CXX object core/apps/fiona/CMakeFiles/compute_gain.dir/compute_gain.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/compute_gain.dir/compute_gain.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp Linking CXX executable ../../../bin/compute_gain cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_gain.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/compute_gain.dir/compute_gain.cpp.o -o ../../../bin/compute_gain -rdynamic -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 4 [ 31%] Built target compute_gain make -f core/apps/fiona/CMakeFiles/fiona.dir/build.make core/apps/fiona/CMakeFiles/fiona.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona.dir/DependInfo.cmake --color= Scanning dependencies of target fiona make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/fiona/CMakeFiles/fiona.dir/build.make core/apps/fiona/CMakeFiles/fiona.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 5 [ 33%] Building CXX object core/apps/fiona/CMakeFiles/fiona.dir/fiona.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/fiona.dir/fiona.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp Linking CXX executable ../../../bin/fiona cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/fiona.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/fiona.dir/fiona.cpp.o -o ../../../bin/fiona -rdynamic -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 5 [ 33%] Built target fiona make -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake --color= Scanning dependencies of target fiona_illumina make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 6 [ 35%] Building CXX object core/apps/fiona/CMakeFiles/fiona_illumina.dir/fiona.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/c++ -DFIONA_ILLUMINA -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/fiona_illumina.dir/fiona.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp Linking CXX executable ../../../bin/fiona_illumina cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/fiona_illumina.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/fiona_illumina.dir/fiona.cpp.o -o ../../../bin/fiona_illumina -rdynamic -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 6 [ 35%] Built target fiona_illumina make -f core/apps/dfi/CMakeFiles/dfi.dir/build.make core/apps/dfi/CMakeFiles/dfi.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi/CMakeFiles/dfi.dir/DependInfo.cmake --color= Scanning dependencies of target dfi make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/dfi/CMakeFiles/dfi.dir/build.make core/apps/dfi/CMakeFiles/dfi.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 35%] Building CXX object core/apps/dfi/CMakeFiles/dfi.dir/dfi.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/dfi.dir/dfi.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp Linking CXX executable ../../../bin/dfi cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi && /usr/bin/cmake -E cmake_link_script CMakeFiles/dfi.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/dfi.dir/dfi.cpp.o -o ../../../bin/dfi -rdynamic -lrt make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 35%] Built target dfi make -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/CMakeFiles/seqan_extras.dir/DependInfo.cmake --color= Scanning dependencies of target seqan_extras make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/CMakeFiles/seqan_extras.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 35%] Built target seqan_extras make -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp/CMakeFiles/variant_comp.dir/DependInfo.cmake --color= Scanning dependencies of target variant_comp make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 100 [ 37%] Building CXX object extras/apps/variant_comp/CMakeFiles/variant_comp.dir/variant_comp.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/variant_comp.dir/variant_comp.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp Linking CXX executable ../../../bin/variant_comp cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp && /usr/bin/cmake -E cmake_link_script CMakeFiles/variant_comp.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/variant_comp.dir/variant_comp.cpp.o -o ../../../bin/variant_comp -rdynamic -lrt make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 100 [ 37%] Built target variant_comp make -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake --color= Scanning dependencies of target sgip make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 37%] Building CXX object extras/apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -std=c++11 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/sgip.dir/sgip.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp Linking CXX executable ../../../bin/sgip cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip && /usr/bin/cmake -E cmake_link_script CMakeFiles/sgip.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -std=c++11 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/sgip.dir/sgip.cpp.o -o ../../../bin/sgip -rdynamic -lrt make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 37%] Built target sgip make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/DependInfo.cmake --color= Scanning dependencies of target seqan_flexlib make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 37%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp Linking CXX static library libseqan_flexlib.a cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -P CMakeFiles/seqan_flexlib.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_flexlib.dir/link.txt --verbose=1 /usr/bin/ar cr libseqan_flexlib.a CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o /usr/bin/ranlib libseqan_flexlib.a make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 37%] Built target seqan_flexlib make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/DependInfo.cmake --color= Scanning dependencies of target seqan_flexbar make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 89 [ 39%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp Linking CXX executable ../../../bin/seqan_flexbar cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_flexbar.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o -o ../../../bin/seqan_flexbar -rdynamic libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 89 [ 39%] Built target seqan_flexbar make -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/DependInfo.cmake --color= Scanning dependencies of target sflexAR make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 91 [ 41%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++ -DFLEX_PROG=ADAPTER_REMOVAL -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp Linking CXX executable ../../../bin/sflexAR cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/sflexAR.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o -o ../../../bin/sflexAR -rdynamic libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 91 [ 41%] Built target sflexAR make -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/DependInfo.cmake --color= Scanning dependencies of target sflexDMulti make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 92 [ 43%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++ -DFLEX_PROG=DEMULTIPLEXING -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp Linking CXX executable ../../../bin/sflexDMulti cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/sflexDMulti.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o -o ../../../bin/sflexDMulti -rdynamic libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 92 [ 43%] Built target sflexDMulti make -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/DependInfo.cmake --color= Scanning dependencies of target sflexFilter make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 43%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++ -DFLEX_PROG=FILTERING -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp Linking CXX executable ../../../bin/sflexFilter cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/sflexFilter.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o -o ../../../bin/sflexFilter -rdynamic libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 43%] Built target sflexFilter make -f extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/DependInfo.cmake --color= Scanning dependencies of target sflexQC make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 93 [ 45%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/seqan_flexbar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++ -DFLEX_PROG=QUALITY_CONTROL -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/sflexQC.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp Linking CXX executable ../../../bin/sflexQC cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/sflexQC.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/sflexQC.dir/seqan_flexbar.cpp.o -o ../../../bin/sflexQC -rdynamic libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 93 [ 45%] Built target sflexQC make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/DependInfo.cmake --color= Scanning dependencies of target test_sflex_adapter make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 45%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp Linking CXX executable ../../../bin/test_sflex_adapter cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_adapter.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o -o ../../../bin/test_sflex_adapter -rdynamic -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 45%] Built target test_sflex_adapter make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/DependInfo.cmake --color= Scanning dependencies of target test_sflex_demultiplex make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 97 [ 47%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp Linking CXX executable ../../../bin/test_sflex_demultiplex cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_demultiplex.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o -o ../../../bin/test_sflex_demultiplex -rdynamic -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 97 [ 47%] Built target test_sflex_demultiplex make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/DependInfo.cmake --color= Scanning dependencies of target test_sflex_general_processing make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 98 [ 50%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp Linking CXX executable ../../../bin/test_sflex_general_processing cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_general_processing.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o -o ../../../bin/test_sflex_general_processing -rdynamic -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 98 [ 50%] Built target test_sflex_general_processing make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/DependInfo.cmake --color= Scanning dependencies of target test_sflex_trimming make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 50%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp Linking CXX executable ../../../bin/test_sflex_trimming cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_trimming.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o -o ../../../bin/test_sflex_trimming -rdynamic -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 50%] Built target test_sflex_trimming make -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/join.dir/DependInfo.cmake --color= Scanning dependencies of target join make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 50%] Building CXX object extras/apps/searchjoin/CMakeFiles/join.dir/join.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/join.dir/join.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp Linking CXX executable ../../../bin/join cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/join.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/join.dir/join.cpp.o -o ../../../bin/join -rdynamic -lrt make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 50%] Built target join make -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/search.dir/DependInfo.cmake --color= Scanning dependencies of target search make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 88 [ 52%] Building CXX object extras/apps/searchjoin/CMakeFiles/search.dir/search.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/search.dir/search.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp Linking CXX executable ../../../bin/search cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/search.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/search.dir/search.cpp.o -o ../../../bin/search -rdynamic -lrt make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 88 [ 52%] Built target search make -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake --color= Scanning dependencies of target rep_sep make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 82 [ 54%] Building CXX object extras/apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/rep_sep.dir/rep_sep.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp Linking CXX executable ../../../bin/rep_sep cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep && /usr/bin/cmake -E cmake_link_script CMakeFiles/rep_sep.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/rep_sep.dir/rep_sep.cpp.o -o ../../../bin/rep_sep -rdynamic -lrt make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 82 [ 54%] Built target rep_sep make -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake --color= Scanning dependencies of target razers3 make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 80 [ 56%] Building CXX object extras/apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/razers3.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 56%] Building CXX object extras/apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/razers3.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/param_tabs.cpp Linking CXX executable ../../../bin/razers3 cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/razers3.dir/razers.cpp.o CMakeFiles/razers3.dir/param_tabs.cpp.o -o ../../../bin/razers3 -rdynamic -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 80 [ 56%] Built target razers3 make -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake --color= Scanning dependencies of target razers3_quality2prob make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 81 [ 58%] Building CXX object extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp Linking CXX executable ../../../bin/razers3_quality2prob cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_quality2prob.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -o ../../../bin/razers3_quality2prob -rdynamic -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 81 [ 58%] Built target razers3_quality2prob make -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake --color= Scanning dependencies of target razers3_simulate_reads make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 58%] Building CXX object extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp Linking CXX executable ../../../bin/razers3_simulate_reads cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_simulate_reads.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -std=c++11 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -o ../../../bin/razers3_simulate_reads -rdynamic -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 58%] Built target razers3_simulate_reads make -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake --color= Scanning dependencies of target param_chooser make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 58%] Building CXX object extras/apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/param_chooser.dir/param_chooser.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp Linking CXX executable ../../../bin/param_chooser cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/param_chooser.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/param_chooser.dir/param_chooser.cpp.o -o ../../../bin/param_chooser -rdynamic -lrt make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 58%] Built target param_chooser make -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake --color= Scanning dependencies of target test_funcs_param_chooser make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 96 [ 60%] Building CXX object extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp Linking CXX executable ../../../bin/test_funcs_param_chooser cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_funcs_param_chooser.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -o ../../../bin/test_funcs_param_chooser -rdynamic make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 96 [ 60%] Built target test_funcs_param_chooser make -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake --color= Scanning dependencies of target bam2roi make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 1 [ 62%] Building CXX object extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/bam2roi.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/bam2roi.dir/bam2roi.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 62%] Building CXX object extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/roi_builder.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/bam2roi.dir/roi_builder.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp Linking CXX executable ../../../bin/bam2roi cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/bam2roi.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/bam2roi.dir/bam2roi.cpp.o CMakeFiles/bam2roi.dir/roi_builder.cpp.o -o ../../../bin/bam2roi -rdynamic -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 1 [ 62%] Built target bam2roi make -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake --color= Scanning dependencies of target roi_feature_projection make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 83 [ 64%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 64%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 84 [ 66%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.cpp Linking CXX executable ../../../bin/roi_feature_projection cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_feature_projection.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -o ../../../bin/roi_feature_projection -rdynamic -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 83 84 [ 66%] Built target roi_feature_projection make -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake --color= Scanning dependencies of target roi_plot_thumbnails make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 66%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp Linking CXX executable ../../../bin/roi_plot_thumbnails cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_plot_thumbnails.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -o ../../../bin/roi_plot_thumbnails -rdynamic -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 66%] Built target roi_plot_thumbnails make -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake --color= Scanning dependencies of target mason_sim make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 13 [ 68%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 68%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 14 [ 70%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/mason_sim.dir/mason_options.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_options.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 15 [ 72%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 72%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/mason_sim.dir/simulate_454.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 16 [ 75%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/mason_sim.dir/simulate_base.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 75%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 17 [ 77%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 18 [ 79%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 79%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp Linking CXX static library libmason_sim.a cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -P CMakeFiles/mason_sim.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_sim.dir/link.txt --verbose=1 /usr/bin/ar cr libmason_sim.a CMakeFiles/mason_sim.dir/external_split_merge.cpp.o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o CMakeFiles/mason_sim.dir/mason_options.cpp.o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o CMakeFiles/mason_sim.dir/simulate_454.cpp.o CMakeFiles/mason_sim.dir/simulate_base.cpp.o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o /usr/bin/ranlib libmason_sim.a make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 13 14 15 16 17 18 [ 79%] Built target mason_sim make -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake --color= Scanning dependencies of target mason_frag_sequencing make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 79%] Building CXX object extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp Linking CXX executable ../../../bin/mason_frag_sequencing cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_frag_sequencing.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -o ../../../bin/mason_frag_sequencing -rdynamic -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 79%] Built target mason_frag_sequencing make -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake --color= Scanning dependencies of target mason_genome make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 11 [ 81%] Building CXX object extras/apps/mason2/CMakeFiles/mason_genome.dir/mason_genome.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/mason_genome.dir/mason_genome.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp Linking CXX executable ../../../bin/mason_genome cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_genome.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/mason_genome.dir/mason_genome.cpp.o -o ../../../bin/mason_genome -rdynamic -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 11 [ 81%] Built target mason_genome make -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake --color= Scanning dependencies of target mason_materializer make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 12 [ 83%] Building CXX object extras/apps/mason2/CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp Linking CXX executable ../../../bin/mason_materializer cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_materializer.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -o ../../../bin/mason_materializer -rdynamic -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 12 [ 83%] Built target mason_materializer make -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake --color= Scanning dependencies of target mason_methylation make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 83%] Building CXX object extras/apps/mason2/CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp Linking CXX executable ../../../bin/mason_methylation cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_methylation.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -o ../../../bin/mason_methylation -rdynamic -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 83%] Built target mason_methylation make -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake --color= Scanning dependencies of target mason_simulator make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 19 [ 85%] Building CXX object extras/apps/mason2/CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp Linking CXX executable ../../../bin/mason_simulator cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_simulator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -o ../../../bin/mason_simulator -rdynamic -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 19 [ 85%] Built target mason_simulator make -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake --color= Scanning dependencies of target mason_splicing make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 20 [ 87%] Building CXX object extras/apps/mason2/CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp Linking CXX executable ../../../bin/mason_splicing cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_splicing.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -o ../../../bin/mason_splicing -rdynamic -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 20 [ 87%] Built target mason_splicing make -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake --color= Scanning dependencies of target mason_tests make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 87%] Building CXX object extras/apps/mason2/CMakeFiles/mason_tests.dir/mason_tests.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/mason_tests.dir/mason_tests.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp Linking CXX executable ../../../bin/mason_tests cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_tests.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/mason_tests.dir/mason_tests.cpp.o -o ../../../bin/mason_tests -rdynamic -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 87%] Built target mason_tests make -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake --color= Scanning dependencies of target mason_variator make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 21 [ 89%] Building CXX object extras/apps/mason2/CMakeFiles/mason_variator.dir/mason_variator.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/mason_variator.dir/mason_variator.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp Linking CXX executable ../../../bin/mason_variator cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_variator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/mason_variator.dir/mason_variator.cpp.o -o ../../../bin/mason_variator -rdynamic -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 21 [ 89%] Built target mason_variator make -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake --color= Scanning dependencies of target insegt make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 9 [ 91%] Building CXX object extras/apps/insegt/CMakeFiles/insegt.dir/insegt.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/insegt.dir/insegt.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp Linking CXX executable ../../../bin/insegt cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt && /usr/bin/cmake -E cmake_link_script CMakeFiles/insegt.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/insegt.dir/insegt.cpp.o -o ../../../bin/insegt -rdynamic -lrt make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 9 [ 91%] Built target insegt make -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf/CMakeFiles/gustaf.dir/DependInfo.cmake --color= Scanning dependencies of target gustaf make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 8 [ 93%] Building CXX object extras/apps/gustaf/CMakeFiles/gustaf.dir/gustaf.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/gustaf.dir/gustaf.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp Linking CXX executable ../../../bin/gustaf cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf && /usr/bin/cmake -E cmake_link_script CMakeFiles/gustaf.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/gustaf.dir/gustaf.cpp.o -o ../../../bin/gustaf -rdynamic -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 8 [ 93%] Built target gustaf make -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/DependInfo.cmake --color= Scanning dependencies of target fx_bam_coverage make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 7 [ 95%] Building CXX object extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp Linking CXX executable ../../../bin/fx_bam_coverage cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_bam_coverage.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -o ../../../bin/fx_bam_coverage -rdynamic -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 7 [ 95%] Built target fx_bam_coverage make -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/DependInfo.cmake --color= Scanning dependencies of target fx_fastq_stats make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 95%] Building CXX object extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp Linking CXX executable ../../../bin/fx_fastq_stats cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_fastq_stats.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -fopenmp -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -o ../../../bin/fx_fastq_stats -rdynamic -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 95%] Built target fx_fastq_stats make -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/bisar.dir/DependInfo.cmake --color= Scanning dependencies of target bisar make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 2 [ 97%] Building CXX object extras/apps/bs_tools/CMakeFiles/bisar.dir/bisar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/bisar.dir/bisar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp Linking CXX executable ../../../bin/bisar cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bisar.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/bisar.dir/bisar.cpp.o -o ../../../bin/bisar -rdynamic -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 2 [ 97%] Built target bisar make -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/casbar.dir/DependInfo.cmake --color= Scanning dependencies of target casbar make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 97%] Building CXX object extras/apps/bs_tools/CMakeFiles/casbar.dir/casbar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/casbar.dir/casbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp Linking CXX executable ../../../bin/casbar cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/casbar.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/casbar.dir/casbar.cpp.o -o ../../../bin/casbar -rdynamic -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 97%] Built target casbar make -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/four2three.dir/DependInfo.cmake --color= Scanning dependencies of target four2three make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 97%] Building CXX object extras/apps/bs_tools/CMakeFiles/four2three.dir/four2three.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/c++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/four2three.dir/four2three.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp Linking CXX executable ../../../bin/four2three cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/four2three.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/four2three.dir/four2three.cpp.o -o ../../../bin/four2three -rdynamic -lrt -L/usr/lib64 -lz make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 97%] Built target four2three make -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/DependInfo.cmake --color= Scanning dependencies of target breakpoint_calculator make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 3 [100%] Building CXX object extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp Linking CXX executable ../../../bin/breakpoint_calculator cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator && /usr/bin/cmake -E cmake_link_script CMakeFiles/breakpoint_calculator.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o -o ../../../bin/breakpoint_calculator -rdynamic -lrt make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 3 [100%] Built target breakpoint_calculator make -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf/CMakeFiles/alf.dir/DependInfo.cmake --color= Scanning dependencies of target alf make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [100%] Building CXX object extras/apps/alf/CMakeFiles/alf.dir/alf.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf && /usr/bin/c++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -o CMakeFiles/alf.dir/alf.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp Linking CXX executable ../../../bin/alf cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf && /usr/bin/cmake -E cmake_link_script CMakeFiles/alf.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -pedantic -Wno-variadic-macros -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -m64 -mtune=generic -fPIC -Wl,-z,now -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ CMakeFiles/alf.dir/alf.cpp.o -o ../../../bin/alf -rdynamic -lrt make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [100%] Built target alf make[1]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 0 + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Aon9Aq + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64 ++ dirname /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64 + cd seqan-1.4.2 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64 -C build/Release 'INSTALL=install -p' make: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -H/builddir/build/BUILD/seqan-1.4.2 -B/builddir/build/BUILD/seqan-1.4.2/build/Release --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core /builddir/build/BUILD/seqan-1.4.2/build/Release/core/CMakeFiles/seqan_core.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `core/CMakeFiles/seqan_core.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 0%] Built target seqan_core /usr/bin/make -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `core/apps/tree_recon/CMakeFiles/tree_recon.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 99 [ 2%] Built target tree_recon /usr/bin/make -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `core/apps/stellar/CMakeFiles/stellar.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 2%] Built target stellar /usr/bin/make -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `core/apps/splazers/CMakeFiles/splazers.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 95 [ 4%] Built target splazers /usr/bin/make -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `core/apps/snp_store/CMakeFiles/snp_store.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 94 [ 6%] Built target snp_store /usr/bin/make -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons/CMakeFiles/seqcons.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `core/apps/seqcons/CMakeFiles/seqcons.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 6%] Built target seqcons /usr/bin/make -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 90 [ 8%] Built target seqan_tcoffee /usr/bin/make -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `core/apps/samcat/CMakeFiles/samcat.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 8%] Built target samcat /usr/bin/make -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 87 [ 10%] Built target sam2matrix /usr/bin/make -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `core/apps/sak/CMakeFiles/sak.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 85 [ 12%] Built target sak /usr/bin/make -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2/CMakeFiles/razers2.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `core/apps/razers2/CMakeFiles/razers2.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 79 [ 14%] Built target razers2 /usr/bin/make -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `core/apps/razers/CMakeFiles/razers.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 77 78 [ 18%] Built target razers /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 75 [ 20%] Built target rabema_build_gold_standard /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `core/apps/rabema/CMakeFiles/rabema_do_search.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 20%] Built target rabema_do_search /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 76 [ 22%] Built target rabema_evaluate /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 22%] Built target rabema_prepare_sam /usr/bin/make -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `core/apps/pair_align/CMakeFiles/pair_align.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 23 [ 25%] Built target pair_align /usr/bin/make -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `core/apps/micro_razers/CMakeFiles/micro_razers.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 22 [ 27%] Built target micro_razers /usr/bin/make -f core/apps/mason/CMakeFiles/mason.dir/build.make core/apps/mason/CMakeFiles/mason.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason/CMakeFiles/mason.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/mason/CMakeFiles/mason.dir/build.make core/apps/mason/CMakeFiles/mason.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `core/apps/mason/CMakeFiles/mason.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 10 [ 29%] Built target mason /usr/bin/make -f core/apps/fiona/CMakeFiles/compute_gain.dir/build.make core/apps/fiona/CMakeFiles/compute_gain.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/compute_gain.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/fiona/CMakeFiles/compute_gain.dir/build.make core/apps/fiona/CMakeFiles/compute_gain.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `core/apps/fiona/CMakeFiles/compute_gain.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 4 [ 31%] Built target compute_gain /usr/bin/make -f core/apps/fiona/CMakeFiles/fiona.dir/build.make core/apps/fiona/CMakeFiles/fiona.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/fiona/CMakeFiles/fiona.dir/build.make core/apps/fiona/CMakeFiles/fiona.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `core/apps/fiona/CMakeFiles/fiona.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 5 [ 33%] Built target fiona /usr/bin/make -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `core/apps/fiona/CMakeFiles/fiona_illumina.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 6 [ 35%] Built target fiona_illumina /usr/bin/make -f core/apps/dfi/CMakeFiles/dfi.dir/build.make core/apps/dfi/CMakeFiles/dfi.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi/CMakeFiles/dfi.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/dfi/CMakeFiles/dfi.dir/build.make core/apps/dfi/CMakeFiles/dfi.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `core/apps/dfi/CMakeFiles/dfi.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 35%] Built target dfi /usr/bin/make -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/CMakeFiles/seqan_extras.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/CMakeFiles/seqan_extras.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 35%] Built target seqan_extras /usr/bin/make -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp/CMakeFiles/variant_comp.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 100 [ 37%] Built target variant_comp /usr/bin/make -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/sgip/CMakeFiles/sgip.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 37%] Built target sgip /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 37%] Built target seqan_flexlib /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 89 [ 39%] Built target seqan_flexbar /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 91 [ 41%] Built target sflexAR /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 92 [ 43%] Built target sflexDMulti /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 43%] Built target sflexFilter /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 93 [ 45%] Built target sflexQC /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 45%] Built target test_sflex_adapter /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 97 [ 47%] Built target test_sflex_demultiplex /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 98 [ 50%] Built target test_sflex_general_processing /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 50%] Built target test_sflex_trimming /usr/bin/make -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/join.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/searchjoin/CMakeFiles/join.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 50%] Built target join /usr/bin/make -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/search.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/searchjoin/CMakeFiles/search.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 88 [ 52%] Built target search /usr/bin/make -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 82 [ 54%] Built target rep_sep /usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/razers3/CMakeFiles/razers3.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 80 [ 56%] Built target razers3 /usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 81 [ 58%] Built target razers3_quality2prob /usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 58%] Built target razers3_simulate_reads /usr/bin/make -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 58%] Built target param_chooser /usr/bin/make -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 96 [ 60%] Built target test_funcs_param_chooser /usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 1 [ 62%] Built target bam2roi /usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 83 84 [ 66%] Built target roi_feature_projection /usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 66%] Built target roi_plot_thumbnails /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/mason2/CMakeFiles/mason_sim.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 13 14 15 16 17 18 [ 79%] Built target mason_sim /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 79%] Built target mason_frag_sequencing /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/mason2/CMakeFiles/mason_genome.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 11 [ 81%] Built target mason_genome /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/mason2/CMakeFiles/mason_materializer.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 12 [ 83%] Built target mason_materializer /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/mason2/CMakeFiles/mason_methylation.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 83%] Built target mason_methylation /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/mason2/CMakeFiles/mason_simulator.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 19 [ 85%] Built target mason_simulator /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/mason2/CMakeFiles/mason_splicing.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 20 [ 87%] Built target mason_splicing /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/mason2/CMakeFiles/mason_tests.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 87%] Built target mason_tests /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/mason2/CMakeFiles/mason_variator.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 21 [ 89%] Built target mason_variator /usr/bin/make -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/insegt/CMakeFiles/insegt.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 9 [ 91%] Built target insegt /usr/bin/make -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf/CMakeFiles/gustaf.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/gustaf/CMakeFiles/gustaf.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 8 [ 93%] Built target gustaf /usr/bin/make -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 7 [ 95%] Built target fx_bam_coverage /usr/bin/make -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 95%] Built target fx_fastq_stats /usr/bin/make -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/bisar.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/bs_tools/CMakeFiles/bisar.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 2 [ 97%] Built target bisar /usr/bin/make -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/casbar.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/bs_tools/CMakeFiles/casbar.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 97%] Built target casbar /usr/bin/make -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/four2three.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/bs_tools/CMakeFiles/four2three.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 97%] Built target four2three /usr/bin/make -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 3 [100%] Built target breakpoint_calculator /usr/bin/make -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/depend make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf/CMakeFiles/alf.dir/DependInfo.cmake --color= make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/build make[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for `extras/apps/alf/CMakeFiles/alf.dir/build'. make[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [100%] Built target alf make[1]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' make[1]: Nothing to be done for `preinstall'. make[1]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/tree_recon -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/tree_recon/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/tree_recon/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/tree_recon/example/example.dist -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/stellar -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/stellar/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/stellar/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/stellar/example/NC_001474.fasta -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/stellar/example/NC_001477.fasta -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/stellar/example/reads.fasta -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/splazers -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/splazers/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/splazers/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/splazers/example/genome.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/splazers/example/reads.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/splazers/example/reads.fa.result -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/snp_store -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/snp_store/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/snp_store/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/snp_store/example/exampleGenome.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/snp_store/example/exampleReads.gff -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/seqcons -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/seqcons/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/seqcons/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/seqan_tcoffee -- Installing: 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`/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -H/builddir/build/BUILD/seqan-1.4.2 -B/builddir/build/BUILD/seqan-1.4.2/build/Release --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/gmake -f CMakeFiles/Makefile2 sak_doc gmake[2]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -H/builddir/build/BUILD/seqan-1.4.2 -B/builddir/build/BUILD/seqan-1.4.2/build/Release --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 2 /usr/bin/gmake -f CMakeFiles/Makefile2 core/apps/sak/CMakeFiles/sak_doc.dir/all gmake[3]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/gmake -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/depend gmake[4]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core /builddir/build/BUILD/seqan-1.4.2/build/Release/core/CMakeFiles/seqan_core.dir/DependInfo.cmake --color= gmake[4]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/gmake -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/build gmake[4]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' gmake[4]: Nothing to be done for `core/CMakeFiles/seqan_core.dir/build'. gmake[4]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [ 0%] Built target seqan_core /usr/bin/gmake -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/depend gmake[4]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake --color= gmake[4]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/gmake -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/build gmake[4]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' gmake[4]: Nothing to be done for `core/apps/sak/CMakeFiles/sak.dir/build'. gmake[4]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 85 [ 50%] Built target sak /usr/bin/gmake -f core/apps/sak/CMakeFiles/sak_doc.dir/build.make core/apps/sak/CMakeFiles/sak_doc.dir/depend gmake[4]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak_doc.dir/DependInfo.cmake --color= Scanning dependencies of target sak_doc gmake[4]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/gmake -f core/apps/sak/CMakeFiles/sak_doc.dir/build.make core/apps/sak/CMakeFiles/sak_doc.dir/build gmake[4]: Entering directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 86 [100%] Generating README.sak.txt cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && ../../../bin/sak --export-help=txt > README.sak.txt /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles [100%] Generating sak.1 cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && ../../../bin/sak --export-help=man > sak.1 gmake[4]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 86 [100%] Built target sak_doc gmake[3]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 0 gmake[2]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' gmake[1]: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' -- Installing: 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-- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/fx_tools/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/bisar -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/casbar -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/four2three -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/bs_tools/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/bs_tools/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/breakpoint_calculator -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/breakpoint_calculator/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/breakpoint_calculator/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/breakpoint_calculator/example/alignment.maf -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/alf -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/alf/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/alf/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/alf/example/small.fasta make: Leaving directory `/builddir/build/BUILD/seqan-1.4.2/build/Release' + mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/include/seqan + cp -pr extras/include/seqan/LICENSE extras/include/seqan/align_extend extras/include/seqan/align_extend.h extras/include/seqan/align_profile extras/include/seqan/align_profile.h extras/include/seqan/align_split extras/include/seqan/align_split.h extras/include/seqan/alignment_free extras/include/seqan/alignment_free.h extras/include/seqan/bam_io extras/include/seqan/basic extras/include/seqan/basic_extras.h extras/include/seqan/bed_io extras/include/seqan/bed_io.h extras/include/seqan/find extras/include/seqan/find_extras.h extras/include/seqan/find_motif extras/include/seqan/find_motif.h extras/include/seqan/index extras/include/seqan/index_extras.h extras/include/seqan/journaled_set extras/include/seqan/journaled_set.h extras/include/seqan/math extras/include/seqan/math.h extras/include/seqan/misc extras/include/seqan/misc_extras.h extras/include/seqan/parse_lm extras/include/seqan/parse_lm.h extras/include/seqan/roi_io extras/include/seqan/roi_io.h extras/include/seqan/sequence extras/include/seqan/sequence_extras.h extras/include/seqan/statistics extras/include/seqan/statistics.h extras/include/seqan/translation extras/include/seqan/translation.h extras/include/seqan/vcf_io extras/include/seqan/vcf_io.h /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/include/seqan + cp -pr core/include/seqan/LICENSE core/include/seqan/align core/include/seqan/align.h core/include/seqan/arg_parse core/include/seqan/arg_parse.h core/include/seqan/bam_io core/include/seqan/bam_io.h core/include/seqan/basic core/include/seqan/basic.h core/include/seqan/consensus core/include/seqan/consensus.h core/include/seqan/file core/include/seqan/file.h core/include/seqan/find core/include/seqan/find.h core/include/seqan/gff_io core/include/seqan/gff_io.h core/include/seqan/graph_algorithms core/include/seqan/graph_algorithms.h core/include/seqan/graph_align core/include/seqan/graph_align.h core/include/seqan/graph_msa core/include/seqan/graph_msa.h core/include/seqan/graph_types core/include/seqan/graph_types.h core/include/seqan/index core/include/seqan/index.h core/include/seqan/map core/include/seqan/map.h core/include/seqan/misc core/include/seqan/modifier core/include/seqan/modifier.h core/include/seqan/parallel core/include/seqan/parallel.h core/include/seqan/pipe core/include/seqan/pipe.h core/include/seqan/platform core/include/seqan/platform.h core/include/seqan/random core/include/seqan/random.h core/include/seqan/score core/include/seqan/score.h core/include/seqan/seeds core/include/seqan/seeds.h core/include/seqan/seq_io core/include/seqan/seq_io.h core/include/seqan/sequence core/include/seqan/sequence.h core/include/seqan/sequence_journaled core/include/seqan/sequence_journaled.h core/include/seqan/store core/include/seqan/store.h core/include/seqan/stream core/include/seqan/stream.h core/include/seqan/system core/include/seqan/system.h core/include/seqan/version.h /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/include/seqan + mkdir -p seqandoc + cp -pr /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/alf /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/breakpoint_calculator /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/bs_tools /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/dfi /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/fiona /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/fx_tools /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/gustaf /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/insegt /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/mason /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/mason2 /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/micro_razers /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/ngs_roi /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/pair_align /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/param_chooser /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/rabema /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/razers /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/razers2 /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/razers3 /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/rep_sep /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/sak /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/sam2matrix /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/samcat /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/searchjoin /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/seqan_flexbar /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/seqan_tcoffee /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/seqcons /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/sgip /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/snp_store /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/splazers /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/stellar /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/tree_recon /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan/variant_comp seqandoc + rm -rf /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan + rm -f 'seqandoc/*.txt' + mv /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/join /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/searchjoin ++ find /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin -perm /644 -type f '(' -name '*.sh' ')' + for i in '`find /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin -perm /644 -type f \( -name "*.sh" \)`' + chmod a+x /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/roi_plot_9.sh + for i in '`find /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin -perm /644 -type f \( -name "*.sh" \)`' + chmod a+x /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/roi_sort.sh + for i in '`find /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin -perm /644 -type f \( -name "*.sh" \)`' + chmod a+x /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/gff_sort.sh + for i in '`find /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin -perm /644 -type f \( -name "*.sh" \)`' + chmod a+x /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/bed_sort.sh + /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 /builddir/build/BUILD/seqan-1.4.2 extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/searchjoin extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/alf extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/breakpoint_calculator extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/four2three extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/casbar extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/bisar extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/fx_bam_coverage extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/gustaf extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/insegt extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/mason_simulator extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/mason_materializer extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/mason_variator extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/mason_frag_sequencing extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/mason_genome extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/roi_plot_thumbnails extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/roi_feature_projection extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/bam2roi extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/param_chooser extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/razers3 extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/rep_sep extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/seqan_flexbar extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/sgip extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/variant_comp extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/dfi extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/compute_gain extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/fiona extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/mason extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/micro_razers extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/pair_align extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/rabema_evaluate extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/rabema_build_gold_standard extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/rabema_prepare_sam extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/razers extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/razers2 extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/sak extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/sam2matrix extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/samcat extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/seqan_tcoffee extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/seqcons extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/snp_store extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/splazers extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/stellar extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/bin/tree_recon /usr/lib/rpm/sepdebugcrcfix: Updated 43 CRC32s, 0 CRC32s did match. 24471 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-compress + /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/lib/rpm/redhat/brp-java-repack-jars Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.nThvZL + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + pushd build/Release ~/build/BUILD/seqan-1.4.2/build/Release ~/build/BUILD/seqan-1.4.2 + ctest --force-new-ctest-process -VV -j2 UpdateCTestConfiguration from :/builddir/build/BUILD/seqan-1.4.2/build/Release/DartConfiguration.tcl UpdateCTestConfiguration from :/builddir/build/BUILD/seqan-1.4.2/build/Release/DartConfiguration.tcl Test project /builddir/build/BUILD/seqan-1.4.2/build/Release Constructing a list of tests Done constructing a list of tests Checking test dependency graph... Checking test dependency graph end test 1 Start 1: app_test_tree_recon 1: Test command: /usr/bin/python2 "/builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tests/run_tests.py" "/builddir/build/BUILD/seqan-1.4.2" "/builddir/build/BUILD/seqan-1.4.2/build/Release" 1: Test timeout computed to be: 9.99988e+06 test 2 Start 2: app_test_stellar 2: Test command: /usr/bin/python2 "/builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/tests/run_tests.py" "/builddir/build/BUILD/seqan-1.4.2" "/builddir/build/BUILD/seqan-1.4.2/build/Release" 2: Test timeout computed to be: 9.99988e+06 1: Executing test for tree_recomb 1: ============================== 1: 1: tree_recomb -m /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tests/example1.dist -o /tmp/tmp1A95L5/example1.dot OK 1: tree_recomb -m /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tests/example2.dist -o /tmp/tmp1A95L5/example2.dot OK 1: tree_recomb -m /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tests/example3.dist -o /tmp/tmp1A95L5/example3.dot OK 1: tree_recomb -b nj -m /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tests/example1.dist -o /tmp/tmp1A95L5/example1.nj.dot OK 1: tree_recomb -b min -m /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tests/example1.dist -o /tmp/tmp1A95L5/example1.min.dot OK 1: tree_recomb -b max -m /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tests/example1.dist -o /tmp/tmp1A95L5/example1.max.dot OK 1: tree_recomb -b wavg -m /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tests/example1.dist -o /tmp/tmp1A95L5/example1.wavg.dot OK 1: DELETING TEMP DIR /tmp/tmp1A95L5 1: tree_recomb -b nj -m /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tests/example2.dist -o /tmp/tmp1A95L5/example2.nj.dot OK 1: tree_recomb -b min -m /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tests/example2.dist -o /tmp/tmp1A95L5/example2.min.dot OK 1: tree_recomb -b max -m /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tests/example2.dist -o /tmp/tmp1A95L5/example2.max.dot OK 1: tree_recomb -b avg -m /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tests/example2.dist -o /tmp/tmp1A95L5/example2.avg.dot OK 1: tree_recomb -b wavg -m /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tests/example2.dist -o /tmp/tmp1A95L5/example2.wavg.dot OK 1: tree_recomb -b nj -m /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tests/example3.dist -o /tmp/tmp1A95L5/example3.nj.dot OK 1: tree_recomb -b min -m /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tests/example3.dist -o /tmp/tmp1A95L5/example3.min.dot OK 1: tree_recomb -b max -m /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tests/example3.dist -o /tmp/tmp1A95L5/example3.max.dot OK 1: tree_recomb -b avg -m /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tests/example3.dist -o /tmp/tmp1A95L5/example3.avg.dot OK 1: tree_recomb -b wavg -m /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tests/example3.dist -o /tmp/tmp1A95L5/example3.wavg.dot OK 1: tree_recomb -m /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tests/example1.dist -o /tmp/tmp1A95L5/example1.dot OK 1: tree_recomb -m /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tests/example1.dist -o /tmp/tmp1A95L5/example1.newick OK 1: tree_recomb -m /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tests/example2.dist -o /tmp/tmp1A95L5/example2.dot OK 1: tree_recomb -m /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tests/example2.dist -o /tmp/tmp1A95L5/example2.newick OK 1: tree_recomb -m /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tests/example3.dist -o /tmp/tmp1A95L5/example3.dot OK 1: tree_recomb -m /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tests/example3.dist -o /tmp/tmp1A95L5/example3.newick OK 1: ============================== 1: total tests: 23 1: failed tests: 0 1: successful tests: 23 1: ============================== 1/28 Test #1: app_test_tree_recon .............. Passed 0.30 sec test 3 Start 3: app_test_snp_store 3: Test command: /usr/bin/python2 "/builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/tests/run_tests.py" "/builddir/build/BUILD/seqan-1.4.2" "/builddir/build/BUILD/seqan-1.4.2/build/Release" 3: Test timeout computed to be: 9.99988e+06 3: Executing test for snp_store 3: ========================= 3: 3: snp_store /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/tests/human-chr22-inf2.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/tests/human-reads2.gff -o /tmp/tmpGa0erv/snps_default.vcf -id /tmp/tmpGa0erv/indels_default.gff OK 3: snp_store /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/tests/human-chr22-inf2.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/tests/human-reads2.sam -re -o /tmp/tmpGa0erv/snps_realign.vcf -id /tmp/tmpGa0erv/indels_realign.gff OK 3: snp_store /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/tests/human-chr22-inf2.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/tests/human-reads2.sam -it 1 -re -oa -mp 1 -m maq -hq -o /tmp/tmpGa0erv/snps_realign_m1mp1oa.vcf -id /tmp/tmpGa0erv/indels_realign_m1mp1oa.gff OK 3: DELETING TEMP DIR /tmp/tmpGa0erv 3: snp_store /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/tests/human-chr22-inf2.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/tests/human-reads2.gff -it 2 -re -oa -mp 1 -hq -o /tmp/tmpGa0erv/snps_realign_m0mp1oa.vcf -id /tmp/tmpGa0erv/indels_realign_m0mp1oa.gff OK 3: snp_store /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/tests/human-chr22-inf2.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/tests/human-reads2.sam -it 1 -ipt 0.1 -osc -re -oa -hq -o /tmp/tmpGa0erv/snps_realign_m0mp1oa_it1ipt01.vcf -id /tmp/tmpGa0erv/indels_realign_m0mp1oa_it1ipt01.gff OK 3: ============================== 3: total tests: 5 3: failed tests: 0 3: successful tests: 5 3: ============================== 2/28 Test #3: app_test_snp_store ............... Passed 12.44 sec test 4 Start 4: app_test_seqan_tcoffee 4: Test command: /usr/bin/python2 "/builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/run_tests.py" "/builddir/build/BUILD/seqan-1.4.2" "/builddir/build/BUILD/seqan-1.4.2/build/Release" 4: Test timeout computed to be: 9.99988e+06 4: Executing test for seqan_tcoffee 4: ================================ 4: 4: seqan_tcoffee -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmpFNj1Ge/1aab.fasta OK 4: seqan_tcoffee -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmpFNj1Ge/1ad2.fasta OK 4: seqan_tcoffee -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmpFNj1Ge/2trx.fasta OK 4: seqan_tcoffee -a protein -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmpFNj1Ge/1aab.protein.fasta OK 4: seqan_tcoffee -a protein -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmpFNj1Ge/1ad2.protein.fasta OK 4: seqan_tcoffee -a protein -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmpFNj1Ge/2trx.protein.fasta OK 4: seqan_tcoffee -m global -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmpFNj1Ge/1aab.mglobal.fasta OK 4: seqan_tcoffee -m local -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmpFNj1Ge/1aab.mlocal.fasta OK 4: seqan_tcoffee -m overlap -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmpFNj1Ge/1aab.moverlap.fasta OK 4: seqan_tcoffee -m lcs -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmpFNj1Ge/1aab.mlcs.fasta OK 4: seqan_tcoffee -m global -m local -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmpFNj1Ge/1aab.mglobal.mlocal.fasta OK 4: seqan_tcoffee -m local -m overlap -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmpFNj1Ge/1aab.mlocal.moverlap.fasta OK 4: seqan_tcoffee -m global -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmpFNj1Ge/1ad2.mglobal.fasta OK 4: seqan_tcoffee -m local -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmpFNj1Ge/1ad2.mlocal.fasta OK 4: seqan_tcoffee -m overlap -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmpFNj1Ge/1ad2.moverlap.fasta OK 4: seqan_tcoffee -m lcs -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmpFNj1Ge/1ad2.mlcs.fasta OK 4: seqan_tcoffee -m global -m local -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmpFNj1Ge/1ad2.mglobal.mlocal.fasta OK 4: seqan_tcoffee -m local -m overlap -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmpFNj1Ge/1ad2.mlocal.moverlap.fasta OK 4: seqan_tcoffee -m global -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmpFNj1Ge/2trx.mglobal.fasta OK 4: seqan_tcoffee -m local -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmpFNj1Ge/2trx.mlocal.fasta OK 4: seqan_tcoffee -m overlap -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmpFNj1Ge/2trx.moverlap.fasta OK 4: seqan_tcoffee -m lcs -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmpFNj1Ge/2trx.mlcs.fasta OK 4: seqan_tcoffee -m global -m local -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmpFNj1Ge/2trx.mglobal.mlocal.fasta OK 4: seqan_tcoffee -m local -m overlap -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmpFNj1Ge/2trx.mlocal.moverlap.fasta OK 4: seqan_tcoffee -g -20 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmpFNj1Ge/1aab.g-20.fasta OK 4: seqan_tcoffee -e -5 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmpFNj1Ge/1aab.e-5.fasta OK 4: seqan_tcoffee -ms 10 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmpFNj1Ge/1aab.ms10.fasta OK 4: seqan_tcoffee -mm -8 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmpFNj1Ge/1aab.mm-8.fasta OK 4: seqan_tcoffee -g -20 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmpFNj1Ge/1ad2.g-20.fasta OK 4: seqan_tcoffee -e -5 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmpFNj1Ge/1ad2.e-5.fasta OK 4: seqan_tcoffee -ms 10 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmpFNj1Ge/1ad2.ms10.fasta OK 4: seqan_tcoffee -mm -8 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmpFNj1Ge/1ad2.mm-8.fasta OK 4: seqan_tcoffee -g -20 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmpFNj1Ge/2trx.g-20.fasta OK 4: seqan_tcoffee -e -5 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmpFNj1Ge/2trx.e-5.fasta OK 4: seqan_tcoffee -ms 10 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmpFNj1Ge/2trx.ms10.fasta OK 4: seqan_tcoffee -mm -8 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmpFNj1Ge/2trx.mm-8.fasta OK 4: seqan_tcoffee -ma /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/VTML200I -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmpFNj1Ge/1aab.maVTML200.fasta OK 4: seqan_tcoffee -ma /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/VTML200I -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmpFNj1Ge/1ad2.maVTML200.fasta OK 4: seqan_tcoffee -ma /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/VTML200I -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmpFNj1Ge/2trx.maVTML200.fasta OK 4: seqan_tcoffee -u /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1aab.newick -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmpFNj1Ge/1aab.u.fasta OK 4: seqan_tcoffee -u /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1ad2.newick -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmpFNj1Ge/1ad2.u.fasta OK 4: seqan_tcoffee -u /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/2trx.newick -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmpFNj1Ge/2trx.u.fasta OK 4: seqan_tcoffee -b nj -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmpFNj1Ge/1aab.bnj.fasta OK 4: seqan_tcoffee -b min -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmpFNj1Ge/1aab.bmin.fasta OK 4: seqan_tcoffee -b max -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmpFNj1Ge/1aab.bmax.fasta OK 4: seqan_tcoffee -b avg -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmpFNj1Ge/1aab.bavg.fasta OK 4: seqan_tcoffee -b wavg -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1aab.fa -o /tmp/tmpFNj1Ge/1aab.bwavg.fasta OK 4: seqan_tcoffee -b nj -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmpFNj1Ge/1ad2.bnj.fasta OK 4: seqan_tcoffee -b min -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmpFNj1Ge/1ad2.bmin.fasta OK 4: seqan_tcoffee -b max -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmpFNj1Ge/1ad2.bmax.fasta OK 4: seqan_tcoffee -b avg -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmpFNj1Ge/1ad2.bavg.fasta OK 4: seqan_tcoffee -b wavg -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1ad2.fa -o /tmp/tmpFNj1Ge/1ad2.bwavg.fasta OK 4: seqan_tcoffee -b nj -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmpFNj1Ge/2trx.bnj.fasta OK 4: seqan_tcoffee -b min -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmpFNj1Ge/2trx.bmin.fasta OK 4: seqan_tcoffee -b max -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmpFNj1Ge/2trx.bmax.fasta OK 4: seqan_tcoffee -b avg -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmpFNj1Ge/2trx.bavg.fasta OK 4: seqan_tcoffee -b wavg -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/2trx.fa -o /tmp/tmpFNj1Ge/2trx.bwavg.fasta OK 4: seqan_tcoffee -i /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1aab.fasta OK 4: seqan_tcoffee -i /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/1ad2.fasta OK 4: seqan_tcoffee -i /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/2trx.fasta OK 4: seqan_tcoffee -a dna -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/adeno2.fa -o /tmp/tmpFNj1Ge/adeno2.fasta OK 4: seqan_tcoffee -a dna -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/adeno3.fa -o /tmp/tmpFNj1Ge/adeno3.fasta OK 4: seqan_tcoffee -a dna -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/adeno4.fa -o /tmp/tmpFNj1Ge/adeno4.fasta OK 4: seqan_tcoffee -a rna -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/adeno2-rna.fa -o /tmp/tmpFNj1Ge/adeno2-rna.fasta OK 4: seqan_tcoffee -a rna -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/adeno3-rna.fa -o /tmp/tmpFNj1Ge/adeno3-rna.fasta OK 4: DELETING TEMP DIR /tmp/tmpFNj1Ge 4: seqan_tcoffee -a rna -s /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/tests/adeno4-rna.fa -o /tmp/tmpFNj1Ge/adeno4-rna.fasta OK 4: ============================== 4: total tests: 66 4: failed tests: 0 4: successful tests: 66 4: ============================== 3/28 Test #4: app_test_seqan_tcoffee ........... Passed 1.20 sec test 5 Start 5: app_test_samcat 5: Test command: /usr/bin/python2 "/builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/tests/run_tests.py" "/builddir/build/BUILD/seqan-1.4.2" "/builddir/build/BUILD/seqan-1.4.2/build/Release" 5: Test timeout computed to be: 9.99988e+06 5: Executing test for samcat 5: ========================= 5: 5: /builddir/build/BUILD/seqan-1.4.2/build/Release/bin/samcat /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/tests/ex1_a1.sam /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/tests/ex1_a2.sam /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/tests/ex1_a3.sam -o /tmp/tmpx41_iS/ex1_merged.sam 5: OK 5: /builddir/build/BUILD/seqan-1.4.2/build/Release/bin/samcat /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/tests/ex1_a1.sam /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/tests/ex1_a2.sam /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/tests/ex1_a3.sam -o /tmp/tmpx41_iS/ex1_merged.bam 5: OK 5: ============================== 5: total tests: 2 5: failed tests: 0 5: successful tests: 2 5: ============================== 5: DELETING TEMP DIR /tmp/tmpx41_iS 4/28 Test #5: app_test_samcat .................. Passed 0.16 sec test 6 Start 6: app_test_sam2matrix 6: Test command: /usr/bin/python2 "/builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/tests/run_tests.py" "/builddir/build/BUILD/seqan-1.4.2" "/builddir/build/BUILD/seqan-1.4.2/build/Release" 6: Test timeout computed to be: 9.99988e+06 6: Executing test for sam2matrix 6: ============================= 6: 6: sam2matrix -m /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/tests/ecoli.sam -m /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/tests/ehec.sam -r /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/tests/ecoli_0.50_ehec_0.50.fastq -rf ecoli.fasta -rf ehec.fasta -o /tmp/tmpFjkLt7/test_sam2matrix.tsv OK 6: ============================== 6: total tests: 1 6: failed tests: 0 6: successful tests: 1 6: ============================== 6: DELETING TEMP DIR /tmp/tmpFjkLt7 5/28 Test #6: app_test_sam2matrix .............. Passed 0.10 sec test 7 Start 7: app_test_sak 7: Test command: /usr/bin/python2 "/builddir/build/BUILD/seqan-1.4.2/core/apps/sak/tests/run_tests.py" "/builddir/build/BUILD/seqan-1.4.2" "/builddir/build/BUILD/seqan-1.4.2/build/Release" 7: Test timeout computed to be: 9.99988e+06 7: Executing test for sak 7: ====================== 7: 7: /builddir/build/BUILD/seqan-1.4.2/build/Release/bin/sak /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/tests/adeno.fasta -o /tmp/tmpiZfKGe/adeno.all.fa 7: OK 7: /builddir/build/BUILD/seqan-1.4.2/build/Release/bin/sak /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/tests/adeno.fasta -s 1 -o /tmp/tmpiZfKGe/adeno.seq1.fa 7: OK 7: /builddir/build/BUILD/seqan-1.4.2/build/Release/bin/sak /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/tests/adeno.fasta -ss 1-2 -o /tmp/tmpiZfKGe/adeno.seq1-2.fa 7: OK 7: /builddir/build/BUILD/seqan-1.4.2/build/Release/bin/sak /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/tests/adeno.fasta -s 3 -o /tmp/tmpiZfKGe/adeno.seq3.fa 7: OK 7: /builddir/build/BUILD/seqan-1.4.2/build/Release/bin/sak /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/tests/adeno.fasta -sn gi|9626621 -o /tmp/tmpiZfKGe/adeno.sn.fa 7: OK 7: DELETING TEMP DIR /tmp/tmpiZfKGe 7: /builddir/build/BUILD/seqan-1.4.2/build/Release/bin/sak /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/tests/adeno.fasta -s 1 -i 5-25 -o /tmp/tmpiZfKGe/adeno.s1i5-25.fa 7: OK 7: /builddir/build/BUILD/seqan-1.4.2/build/Release/bin/sak /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/tests/adeno.fasta -ss 1-2 -i 5-25 -o /tmp/tmpiZfKGe/adeno.s1-2i5-25.fa 7: OK 7: /builddir/build/BUILD/seqan-1.4.2/build/Release/bin/sak /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/tests/adeno.fasta -s 1 -rc -o /tmp/tmpiZfKGe/adeno.s1rc.fa 7: OK 7: ============================== 7: total tests: 8 7: failed tests: 0 7: successful tests: 8 7: ============================== 6/28 Test #7: app_test_sak ..................... Passed 0.10 sec test 8 Start 8: app_test_razers2 8: Test command: /usr/bin/python2 "/builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/run_tests.py" "/builddir/build/BUILD/seqan-1.4.2" "/builddir/build/BUILD/seqan-1.4.2/build/Release" 8: Test timeout computed to be: 9.99988e+06 8: Executing test for razers2 8: =========================== 8: 8: razers2 --low-memory /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads36_1.razers OK 8: razers2 --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads36_1-id.razers OK 8: razers2 --low-memory -id -r /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads36_1-id-r.razers OK 8: razers2 --low-memory -id -f /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads36_1-id-f.razers OK 8: razers2 --low-memory -id -i 90 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads36_1-id-i90.razers OK 8: razers2 --low-memory -id -i 91 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads36_1-id-i91.razers OK 8: razers2 --low-memory -id -i 92 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads36_1-id-i92.razers OK 8: razers2 --low-memory -id -i 93 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads36_1-id-i93.razers OK 8: razers2 --low-memory -id -i 94 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads36_1-id-i94.razers OK 8: razers2 --low-memory -id -i 95 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads36_1-id-i95.razers OK 8: razers2 --low-memory -id -i 96 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads36_1-id-i96.razers OK 8: razers2 --low-memory -id -i 97 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads36_1-id-i97.razers OK 8: razers2 --low-memory -id -i 98 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads36_1-id-i98.razers OK 8: razers2 --low-memory -id -i 99 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads36_1-id-i99.razers OK 8: razers2 --low-memory -id -i 100 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads36_1-id-i100.razers OK 8: razers2 --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads36_1-id-of0.razers OK 8: razers2 --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads36_1-id-of1.fa OK 8: razers2 --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads36_1-id-of2.eland OK 8: razers2 --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads36_1-id-of3.gff OK 8: razers2 --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads36_1-id-of4.sam OK 8: razers2 --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads36_1-id-of5.afg OK 8: razers2 --low-memory -id -so 0 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads36_1-id-so0.razers OK 8: razers2 --low-memory -id -so 1 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads36_1-id-so1.razers OK 8: razers2 --low-memory /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads100_1.razers OK 8: razers2 --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads100_1-id.razers OK 8: razers2 --low-memory -id -r /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads100_1-id-r.razers OK 8: razers2 --low-memory -id -f /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads100_1-id-f.razers OK 8: razers2 --low-memory -id -i 90 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads100_1-id-i90.razers OK 8: razers2 --low-memory -id -i 91 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads100_1-id-i91.razers OK 8: razers2 --low-memory -id -i 92 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads100_1-id-i92.razers OK 8: razers2 --low-memory -id -i 93 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads100_1-id-i93.razers OK 8: razers2 --low-memory -id -i 94 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads100_1-id-i94.razers OK 8: razers2 --low-memory -id -i 95 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads100_1-id-i95.razers OK 8: razers2 --low-memory -id -i 96 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads100_1-id-i96.razers OK 2: Executing test for stellar 2: ========================= 2: 2: stellar -e 0.1 -l 50 -x 10 -k 7 -n 5000 -s 10000 -f -v -t -o /tmp/tmpAqKYb0/e-1.gff /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/tests/512_simSeq1_e-1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/tests/512_simSeq2_e-1.fa OK 2: stellar -e 0.05 -l 50 -x 10 -k 7 -n 5000 -s 10000 -f -v -t -o /tmp/tmpAqKYb0/5e-2.gff /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/tests/512_simSeq1_5e-2.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/tests/512_simSeq2_5e-2.fa OK 2: stellar -e 0.025 -l 50 -x 10 -k 7 -n 5000 -s 10000 -f -v -t -o /tmp/tmpAqKYb0/25e-3.gff /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/tests/512_simSeq1_25e-3.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/tests/512_simSeq2_25e-3.fa OK 2: stellar -e 0.075 -l 50 -x 10 -k 7 -n 5000 -s 10000 -f -v -t -o /tmp/tmpAqKYb0/75e-3.gff /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/tests/512_simSeq1_75e-3.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/tests/512_simSeq2_75e-3.fa OK 2: stellar -e 0.0001 -l 50 -x 10 -k 7 -n 5000 -s 10000 -f -v -t -o /tmp/tmpAqKYb0/e-4.gff /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/tests/512_simSeq1_e-4.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/tests/512_simSeq2_e-4.fa OK 2: stellar -e 0.05 -l 20 -x 10 -k 7 -n 5000 -s 10000 -f -v -t -o /tmp/tmpAqKYb0/minLen20.gff /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/tests/512_simSeq1_5e-2.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/tests/512_simSeq2_5e-2.fa OK 2: stellar -e 0.05 -l 150 -x 10 -k 7 -n 5000 -s 10000 -f -v -t -o /tmp/tmpAqKYb0/minLen150.gff /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/tests/512_simSeq1_5e-2.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/tests/512_simSeq2_5e-2.fa OK 2: stellar -e 0.05 -l 50 -x 10 -k 7 -n 5000 -s 10000 -f -v -t -o /tmp/tmpAqKYb0/5e-2.txt /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/tests/512_simSeq1_5e-2.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/tests/512_simSeq2_5e-2.fa OK 2: ============================== 2: total tests: 8 2: failed tests: 0 2: successful tests: 8 2: ============================== 7/28 Test #2: app_test_stellar ................. Passed 16.72 sec test 9 Start 9: app_test_razers 9: Test command: /usr/bin/python2 "/builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/run_tests.py" "/builddir/build/BUILD/seqan-1.4.2" "/builddir/build/BUILD/seqan-1.4.2/build/Release" 9: Test timeout computed to be: 9.99988e+06 8: razers2 --low-memory -id -i 97 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads100_1-id-i97.razers OK 8: razers2 --low-memory -id -i 98 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads100_1-id-i98.razers OK 8: razers2 --low-memory -id -i 99 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads100_1-id-i99.razers OK 8: razers2 --low-memory -id -i 100 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads100_1-id-i100.razers OK 8: razers2 --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads100_1-id-of0.razers OK 8: razers2 --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads100_1-id-of1.fa OK 8: razers2 --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads100_1-id-of2.eland OK 8: razers2 --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads100_1-id-of3.gff OK 8: razers2 --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads100_1-id-of4.sam OK 8: razers2 --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads100_1-id-of5.afg OK 8: razers2 --low-memory -id -so 0 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads100_1-id-so0.razers OK 8: razers2 --low-memory -id -so 1 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa -o /tmp/tmp9BHfPZ/se-adeno-reads100_1-id-so1.razers OK 8: razers2 --low-memory /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads36_2.razers OK 8: razers2 --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads36_2-id.razers OK 8: razers2 --low-memory -id -r /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads36_2-id-r.razers OK 8: razers2 --low-memory -id -f /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads36_2-id-f.razers OK 9: Executing test for razers 9: ========================= 9: 9: razers --low-memory /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads36_1.razers OK 9: razers --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads36_1-id.razers OK 9: razers --low-memory -id -r /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads36_1-id-r.razers OK 9: razers --low-memory -id -f /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads36_1-id-f.razers OK 9: razers --low-memory -id -i 90 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads36_1-id-i90.razers OK 9: razers --low-memory -id -i 91 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads36_1-id-i91.razers OK 9: razers --low-memory -id -i 92 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads36_1-id-i92.razers OK 9: razers --low-memory -id -i 93 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads36_1-id-i93.razers OK 9: razers --low-memory -id -i 94 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads36_1-id-i94.razers OK 9: razers --low-memory -id -i 95 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads36_1-id-i95.razers OK 9: razers --low-memory -id -i 96 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads36_1-id-i96.razers OK 9: razers --low-memory -id -i 97 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads36_1-id-i97.razers OK 9: razers --low-memory -id -i 98 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads36_1-id-i98.razers OK 9: razers --low-memory -id -i 99 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads36_1-id-i99.razers OK 9: razers --low-memory -id -i 100 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads36_1-id-i100.razers OK 9: razers --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads36_1-id-of0.razers OK 9: razers --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads36_1-id-of1.fa OK 9: razers --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads36_1-id-of2.eland OK 9: razers --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads36_1-id-of3.gff OK 9: razers --low-memory -id -so 0 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads36_1-id-so0.razers OK 9: razers --low-memory -id -so 1 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads36_1-id-so1.razers OK 9: razers --low-memory /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads100_1.razers OK 9: razers --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads100_1-id.razers OK 9: razers --low-memory -id -r /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads100_1-id-r.razers OK 9: razers --low-memory -id -f /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads100_1-id-f.razers OK 9: razers --low-memory -id -i 90 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads100_1-id-i90.razers OK 9: razers --low-memory -id -i 91 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads100_1-id-i91.razers OK 9: razers --low-memory -id -i 92 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads100_1-id-i92.razers OK 9: razers --low-memory -id -i 93 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads100_1-id-i93.razers OK 9: razers --low-memory -id -i 94 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads100_1-id-i94.razers OK 9: razers --low-memory -id -i 95 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads100_1-id-i95.razers OK 9: razers --low-memory -id -i 96 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads100_1-id-i96.razers OK 9: razers --low-memory -id -i 97 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads100_1-id-i97.razers OK 9: razers --low-memory -id -i 98 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads100_1-id-i98.razers OK 9: razers --low-memory -id -i 99 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads100_1-id-i99.razers OK 8: razers2 --low-memory -id -i 90 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads36_2-id-i90.razers OK 8: razers2 --low-memory -id -i 91 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads36_2-id-i91.razers OK 8: razers2 --low-memory -id -i 92 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads36_2-id-i92.razers OK 8: razers2 --low-memory -id -i 93 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads36_2-id-i93.razers OK 8: razers2 --low-memory -id -i 94 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads36_2-id-i94.razers OK 8: razers2 --low-memory -id -i 95 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads36_2-id-i95.razers OK 8: razers2 --low-memory -id -i 96 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads36_2-id-i96.razers OK 8: razers2 --low-memory -id -i 97 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads36_2-id-i97.razers OK 8: razers2 --low-memory -id -i 98 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads36_2-id-i98.razers OK 8: razers2 --low-memory -id -i 99 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads36_2-id-i99.razers OK 8: razers2 --low-memory -id -i 100 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads36_2-id-i100.razers OK 8: razers2 --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads36_2-id-of0.razers OK 8: razers2 --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads36_2-id-of1.fa OK 8: razers2 --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads36_2-id-of2.eland OK 9: razers --low-memory -id -i 100 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads100_1-id-i100.razers OK 9: razers --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads100_1-id-of0.razers OK 9: razers --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads100_1-id-of1.fa OK 9: razers --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads100_1-id-of2.eland OK 9: razers --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads100_1-id-of3.gff OK 9: razers --low-memory -id -so 0 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads100_1-id-so0.razers OK 9: razers --low-memory -id -so 1 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa -o /tmp/tmpvLh_bP/se-adeno-reads100_1-id-so1.razers OK 9: razers --low-memory /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads36_2.razers OK 9: razers --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads36_2-id.razers OK 9: razers --low-memory -id -r /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads36_2-id-r.razers OK 9: razers --low-memory -id -f /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads36_2-id-f.razers OK 9: razers --low-memory -id -i 90 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads36_2-id-i90.razers OK 9: razers --low-memory -id -i 91 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads36_2-id-i91.razers OK 9: razers --low-memory -id -i 92 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads36_2-id-i92.razers OK 9: razers --low-memory -id -i 93 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads36_2-id-i93.razers OK 9: razers --low-memory -id -i 94 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads36_2-id-i94.razers OK 9: razers --low-memory -id -i 95 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads36_2-id-i95.razers OK 9: razers --low-memory -id -i 96 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads36_2-id-i96.razers OK 9: razers --low-memory -id -i 97 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads36_2-id-i97.razers OK 9: razers --low-memory -id -i 98 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads36_2-id-i98.razers OK 9: razers --low-memory -id -i 99 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads36_2-id-i99.razers OK 9: razers --low-memory -id -i 100 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads36_2-id-i100.razers OK 9: razers --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads36_2-id-of0.razers OK 9: razers --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads36_2-id-of1.fa OK 9: razers --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads36_2-id-of2.eland OK 9: razers --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads36_2-id-of3.gff OK 9: razers --low-memory -id -so 0 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads36_2-id-so0.razers OK 9: razers --low-memory -id -so 1 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads36_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads36_2-id-so1.razers OK 8: razers2 --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads36_2-id-of3.gff OK 8: razers2 --low-memory -id -so 0 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads36_2-id-so0.razers OK 8: razers2 --low-memory -id -so 1 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads36_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads36_2-id-so1.razers OK 8: razers2 --low-memory /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads100_2.razers OK 8: razers2 --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads100_2-id.razers OK 8: razers2 --low-memory -id -r /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads100_2-id-r.razers OK 8: razers2 --low-memory -id -f /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads100_2-id-f.razers OK 8: razers2 --low-memory -id -i 90 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads100_2-id-i90.razers OK 8: razers2 --low-memory -id -i 91 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads100_2-id-i91.razers OK 8: razers2 --low-memory -id -i 92 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads100_2-id-i92.razers OK 8: razers2 --low-memory -id -i 93 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads100_2-id-i93.razers OK 8: razers2 --low-memory -id -i 94 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads100_2-id-i94.razers OK 8: razers2 --low-memory -id -i 95 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads100_2-id-i95.razers OK 8: razers2 --low-memory -id -i 96 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads100_2-id-i96.razers OK 8: razers2 --low-memory -id -i 97 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads100_2-id-i97.razers OK 8: razers2 --low-memory -id -i 98 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads100_2-id-i98.razers OK 8: DELETING TEMP DIR /tmp/tmp9BHfPZ 8: razers2 --low-memory -id -i 99 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads100_2-id-i99.razers OK 8: razers2 --low-memory -id -i 100 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads100_2-id-i100.razers OK 8: razers2 --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads100_2-id-of0.razers OK 8: razers2 --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads100_2-id-of1.fa OK 8: razers2 --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads100_2-id-of2.eland OK 8: razers2 --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads100_2-id-of3.gff OK 8: razers2 --low-memory -id -so 0 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads100_2-id-so0.razers OK 8: razers2 --low-memory -id -so 1 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/tests/adeno-reads100_2.fa -o /tmp/tmp9BHfPZ/pe-adeno-reads100_2-id-so1.razers OK 8: ============================== 8: total tests: 88 8: failed tests: 0 8: successful tests: 88 8: ============================== 8/28 Test #8: app_test_razers2 ................. Passed 19.44 sec test 10 Start 10: app_test_rabema 10: Test command: /usr/bin/python2 "/builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/tests/run_tests.py" "/builddir/build/BUILD/seqan-1.4.2" "/builddir/build/BUILD/seqan-1.4.2/build/Release" 10: Test timeout computed to be: 9.99988e+06 9: razers --low-memory /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads100_2.razers OK 9: razers --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads100_2-id.razers OK 9: razers --low-memory -id -r /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads100_2-id-r.razers OK 9: razers --low-memory -id -f /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads100_2-id-f.razers OK 9: razers --low-memory -id -i 90 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads100_2-id-i90.razers OK 9: razers --low-memory -id -i 91 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads100_2-id-i91.razers OK 9: razers --low-memory -id -i 92 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads100_2-id-i92.razers OK 9: razers --low-memory -id -i 93 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads100_2-id-i93.razers OK 9: razers --low-memory -id -i 94 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads100_2-id-i94.razers OK 9: razers --low-memory -id -i 95 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads100_2-id-i95.razers OK 9: razers --low-memory -id -i 96 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads100_2-id-i96.razers OK 9: razers --low-memory -id -i 97 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads100_2-id-i97.razers OK 9: razers --low-memory -id -i 98 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads100_2-id-i98.razers OK 10: Executing test for rabema 10: ========================= 10: 10: rabema_prepare_sam -i /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/tests/gold-adeno-hamming-08.sam -o /tmp/tmpOLgRk8/gold-adeno-hamming-08.by_qname.sam OK 10: rabema_prepare_sam -i /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/tests/gold-adeno-edit-08.sam -o /tmp/tmpOLgRk8/gold-adeno-edit-08.by_qname.sam OK 10: rabema_build_gold_standard --distance-metric hamming -e 8 -o /tmp/tmpOLgRk8/gold-adeno-hamming-08.gsi --reference /tmp/tmpOLgRk8/adeno-genome.fa --in-sam /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/tests/gold-adeno-hamming-08.by_coordinate.sam OK 10: rabema_build_gold_standard --distance-metric edit -e 8 -o /tmp/tmpOLgRk8/gold-adeno-edit-08.gsi --reference /tmp/tmpOLgRk8/adeno-genome.fa --in-sam /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/tests/gold-adeno-edit-08.by_coordinate.sam OK 10: DELETING TEMP DIR /tmp/tmpOLgRk8 10: rabema_evaluate --distance-metric hamming -e 8 --reference /tmp/tmpOLgRk8/adeno-genome.fa --in-sam /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/tests/razers2-adeno-hamming-08.sam --in-gsi /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/tests/gold-adeno-hamming-08.gsi OK 10: rabema_evaluate --distance-metric hamming -e 8 --reference /tmp/tmpOLgRk8/adeno-genome.fa --in-sam /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/tests/razers2-adeno-hamming-04.sam --in-gsi /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/tests/gold-adeno-hamming-08.gsi OK 10: rabema_evaluate --distance-metric edit -e 8 --reference /tmp/tmpOLgRk8/adeno-genome.fa --in-sam /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/tests/razers2-adeno-edit-08.sam --in-gsi /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/tests/gold-adeno-edit-08.gsi OK 10: rabema_evaluate --distance-metric edit -e 8 --reference /tmp/tmpOLgRk8/adeno-genome.fa --in-sam /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/tests/razers2-adeno-edit-04.sam --in-gsi /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/tests/gold-adeno-edit-08.gsi OK 10: ============================== 10: total tests: 8 10: failed tests: 0 10: successful tests: 8 10: ============================== 9/28 Test #10: app_test_rabema .................. Passed 0.59 sec test 11 Start 11: app_test_pair_align 11: Test command: /usr/bin/python2 "/builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/run_tests.py" "/builddir/build/BUILD/seqan-1.4.2" "/builddir/build/BUILD/seqan-1.4.2/build/Release" 11: Test timeout computed to be: 9.99988e+06 11: Executing test for pair_align 11: ============================= 11: 11: pair_align -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1aab.fa -o /tmp/tmpwbX5wg/1aab.fasta OK 11: pair_align -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1ad2.fa -o /tmp/tmpwbX5wg/1ad2.fasta OK 11: pair_align -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/2trx.fa -o /tmp/tmpwbX5wg/2trx.fasta OK 11: pair_align -a protein -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1aab.fa -o /tmp/tmpwbX5wg/1aab.protein.fasta OK 11: pair_align -a protein -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1ad2.fa -o /tmp/tmpwbX5wg/1ad2.protein.fasta OK 11: pair_align -a protein -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/2trx.fa -o /tmp/tmpwbX5wg/2trx.protein.fasta OK 11: pair_align -m nw -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1aab.fa -o /tmp/tmpwbX5wg/1aab.mnw.fasta OK 11: pair_align -m gotoh -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1aab.fa -o /tmp/tmpwbX5wg/1aab.mgotoh.fasta OK 11: pair_align -m sw -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1aab.fa -o /tmp/tmpwbX5wg/1aab.msw.fasta OK 11: pair_align -m lcs -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1aab.fa -o /tmp/tmpwbX5wg/1aab.mlcs.fasta OK 11: pair_align -m nw -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1ad2.fa -o /tmp/tmpwbX5wg/1ad2.mnw.fasta OK 11: pair_align -m gotoh -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1ad2.fa -o /tmp/tmpwbX5wg/1ad2.mgotoh.fasta OK 11: pair_align -m sw -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1ad2.fa -o /tmp/tmpwbX5wg/1ad2.msw.fasta OK 11: pair_align -m lcs -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1ad2.fa -o /tmp/tmpwbX5wg/1ad2.mlcs.fasta OK 11: pair_align -m nw -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/2trx.fa -o /tmp/tmpwbX5wg/2trx.mnw.fasta OK 11: pair_align -m gotoh -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/2trx.fa -o /tmp/tmpwbX5wg/2trx.mgotoh.fasta OK 11: pair_align -m sw -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/2trx.fa -o /tmp/tmpwbX5wg/2trx.msw.fasta OK 11: pair_align -m lcs -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/2trx.fa -o /tmp/tmpwbX5wg/2trx.mlcs.fasta OK 11: pair_align -g -20 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1aab.fa -o /tmp/tmpwbX5wg/1aab.g-20.fasta OK 11: pair_align -e -5 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1aab.fa -o /tmp/tmpwbX5wg/1aab.e-5.fasta OK 11: pair_align -ms 10 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1aab.fa -o /tmp/tmpwbX5wg/1aab.ms10.fasta OK 11: pair_align -mm -8 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1aab.fa -o /tmp/tmpwbX5wg/1aab.mm-8.fasta OK 11: pair_align -g -20 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1ad2.fa -o /tmp/tmpwbX5wg/1ad2.g-20.fasta OK 11: pair_align -e -5 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1ad2.fa -o /tmp/tmpwbX5wg/1ad2.e-5.fasta OK 11: pair_align -ms 10 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1ad2.fa -o /tmp/tmpwbX5wg/1ad2.ms10.fasta OK 11: pair_align -mm -8 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1ad2.fa -o /tmp/tmpwbX5wg/1ad2.mm-8.fasta OK 11: pair_align -g -20 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/2trx.fa -o /tmp/tmpwbX5wg/2trx.g-20.fasta OK 11: pair_align -e -5 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/2trx.fa -o /tmp/tmpwbX5wg/2trx.e-5.fasta OK 11: pair_align -ms 10 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/2trx.fa -o /tmp/tmpwbX5wg/2trx.ms10.fasta OK 11: pair_align -mm -8 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/2trx.fa -o /tmp/tmpwbX5wg/2trx.mm-8.fasta OK 11: pair_align -ma /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/VTML200I -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1aab.fa -o /tmp/tmpwbX5wg/1aab.maVTML200.fasta OK 11: pair_align -ma /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/VTML200I -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1ad2.fa -o /tmp/tmpwbX5wg/1ad2.maVTML200.fasta OK 11: pair_align -ma /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/VTML200I -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/2trx.fa -o /tmp/tmpwbX5wg/2trx.maVTML200.fasta OK 11: pair_align -lo 5 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1aab.fa -o /tmp/tmpwbX5wg/1aab.lo5.fasta OK 11: pair_align -hi 5 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1aab.fa -o /tmp/tmpwbX5wg/1aab.hi5.fasta OK 11: pair_align -lo 5 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1ad2.fa -o /tmp/tmpwbX5wg/1ad2.lo5.fasta OK 11: pair_align -hi 5 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1ad2.fa -o /tmp/tmpwbX5wg/1ad2.hi5.fasta OK 11: pair_align -lo 5 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/2trx.fa -o /tmp/tmpwbX5wg/2trx.lo5.fasta OK 11: pair_align -hi 5 -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/2trx.fa -o /tmp/tmpwbX5wg/2trx.hi5.fasta OK 11: pair_align -c ffff -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1aab.fa -o /tmp/tmpwbX5wg/1aab.cffff.fasta OK 11: pair_align -c tttt -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1aab.fa -o /tmp/tmpwbX5wg/1aab.ctttt.fasta OK 11: pair_align -c ffft -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1aab.fa -o /tmp/tmpwbX5wg/1aab.cffft.fasta OK 11: pair_align -c fftf -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1aab.fa -o /tmp/tmpwbX5wg/1aab.cfftf.fasta OK 11: pair_align -c ftff -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1aab.fa -o /tmp/tmpwbX5wg/1aab.cftff.fasta OK 11: pair_align -c tfff -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1aab.fa -o /tmp/tmpwbX5wg/1aab.ctfff.fasta OK 11: pair_align -c fftt -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1aab.fa -o /tmp/tmpwbX5wg/1aab.cfftt.fasta OK 11: pair_align -c fttf -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1aab.fa -o /tmp/tmpwbX5wg/1aab.cfttf.fasta OK 11: pair_align -c ttff -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1aab.fa -o /tmp/tmpwbX5wg/1aab.cttff.fasta OK 11: pair_align -c tfft -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1aab.fa -o /tmp/tmpwbX5wg/1aab.ctfft.fasta OK 11: pair_align -c ffff -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1ad2.fa -o /tmp/tmpwbX5wg/1ad2.cffff.fasta OK 11: pair_align -c tttt -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1ad2.fa -o /tmp/tmpwbX5wg/1ad2.ctttt.fasta OK 11: pair_align -c ffft -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1ad2.fa -o /tmp/tmpwbX5wg/1ad2.cffft.fasta OK 11: pair_align -c fftf -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1ad2.fa -o /tmp/tmpwbX5wg/1ad2.cfftf.fasta OK 11: pair_align -c ftff -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1ad2.fa -o /tmp/tmpwbX5wg/1ad2.cftff.fasta OK 11: pair_align -c tfff -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1ad2.fa -o /tmp/tmpwbX5wg/1ad2.ctfff.fasta OK 11: pair_align -c fftt -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1ad2.fa -o /tmp/tmpwbX5wg/1ad2.cfftt.fasta OK 11: pair_align -c fttf -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1ad2.fa -o /tmp/tmpwbX5wg/1ad2.cfttf.fasta OK 11: pair_align -c ttff -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1ad2.fa -o /tmp/tmpwbX5wg/1ad2.cttff.fasta OK 11: pair_align -c tfft -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/1ad2.fa -o /tmp/tmpwbX5wg/1ad2.ctfft.fasta OK 11: pair_align -c ffff -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/2trx.fa -o /tmp/tmpwbX5wg/2trx.cffff.fasta OK 11: pair_align -c tttt -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/2trx.fa -o /tmp/tmpwbX5wg/2trx.ctttt.fasta OK 11: pair_align -c ffft -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/2trx.fa -o /tmp/tmpwbX5wg/2trx.cffft.fasta OK 11: pair_align -c fftf -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/2trx.fa -o /tmp/tmpwbX5wg/2trx.cfftf.fasta OK 11: pair_align -c ftff -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/2trx.fa -o /tmp/tmpwbX5wg/2trx.cftff.fasta OK 11: pair_align -c tfff -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/2trx.fa -o /tmp/tmpwbX5wg/2trx.ctfff.fasta OK 11: pair_align -c fftt -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/2trx.fa -o /tmp/tmpwbX5wg/2trx.cfftt.fasta OK 11: pair_align -c fttf -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/2trx.fa -o /tmp/tmpwbX5wg/2trx.cfttf.fasta OK 11: pair_align -c ttff -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/2trx.fa -o /tmp/tmpwbX5wg/2trx.cttff.fasta OK 11: pair_align -c tfft -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/2trx.fa -o /tmp/tmpwbX5wg/2trx.ctfft.fasta OK 11: pair_align -a dna -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/adeno1.fa -o /tmp/tmpwbX5wg/adeno1.fasta OK 11: DELETING TEMP DIR /tmp/tmpwbX5wg 11: pair_align -a dna -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/adeno2.fa -o /tmp/tmpwbX5wg/adeno2.fasta OK 11: pair_align -a dna -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/adeno3.fa -o /tmp/tmpwbX5wg/adeno3.fasta OK 11: pair_align -a rna -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/adeno1-rna.fa -o /tmp/tmpwbX5wg/adeno1-rna.fasta OK 11: pair_align -a rna -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/adeno2-rna.fa -o /tmp/tmpwbX5wg/adeno2-rna.fasta OK 11: pair_align -a rna -s /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/tests/adeno3-rna.fa -o /tmp/tmpwbX5wg/adeno3-rna.fasta OK 11: ============================== 11: total tests: 75 11: failed tests: 0 11: successful tests: 75 11: ============================== 10/28 Test #11: app_test_pair_align .............. Passed 0.40 sec test 12 Start 12: app_test_micro_razers 12: Test command: /usr/bin/python2 "/builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/run_tests.py" "/builddir/build/BUILD/seqan-1.4.2" "/builddir/build/BUILD/seqan-1.4.2/build/Release" 12: Test timeout computed to be: 9.99988e+06 9: razers --low-memory -id -i 99 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads100_2-id-i99.razers OK 9: razers --low-memory -id -i 100 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads100_2-id-i100.razers OK 9: razers --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads100_2-id-of0.razers OK 9: razers --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads100_2-id-of1.fa OK 9: DELETING TEMP DIR /tmp/tmpvLh_bP 9: razers --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads100_2-id-of2.eland OK 9: razers --low-memory -id /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads100_2-id-of3.gff OK 9: razers --low-memory -id -so 0 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads100_2-id-so0.razers OK 9: razers --low-memory -id -so 1 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/tests/adeno-reads100_2.fa -o /tmp/tmpvLh_bP/pe-adeno-reads100_2-id-so1.razers OK 9: ============================== 9: total tests: 84 9: failed tests: 0 9: successful tests: 84 9: ============================== 11/28 Test #9: app_test_razers .................. Passed 21.84 sec test 13 Start 13: app_test_mason 13: Test command: /usr/bin/python2 "/builddir/build/BUILD/seqan-1.4.2/core/apps/mason/tests/run_tests.py" "/builddir/build/BUILD/seqan-1.4.2" "/builddir/build/BUILD/seqan-1.4.2/build/Release" 13: Test timeout computed to be: 9.99988e+06 13: Executing test for mason 13: ======================== 13: 13: mason 454 -N 100 -nm 400 -ne 40 -s 0 -rnp read -o /tmp/tmpeusBIu/454-se-random-N100-nm400-ne40-s0.fasta random.fasta mason 454 -N 100 -nm 400 -ne 40 -s 0 -rnp read -o /tmp/tmpeusBIu/454-se-random-N100-nm400-ne40-s0.fasta random.fasta OK 13: mason 454 -N 100 -nm 400 -ne 40 -s 0 -sq -rnp read -o /tmp/tmpeusBIu/454-se-random-N100-nm400-ne40-s0-sq.fastq random.fasta mason 454 -N 100 -nm 400 -ne 40 -s 0 -sq -rnp read -o /tmp/tmpeusBIu/454-se-random-N100-nm400-ne40-s0-sq.fastq random.fasta OK 13: mason 454 -N 100 -nm 200 -ne 20 -s 0 -rnp read -o /tmp/tmpeusBIu/454-se-random-N100-nm200-ne20-s0.fasta random.fasta mason 454 -N 100 -nm 200 -ne 20 -s 0 -rnp read -o /tmp/tmpeusBIu/454-se-random-N100-nm200-ne20-s0.fasta random.fasta OK 13: mason 454 -N 100 -nm 200 -ne 20 -s 0 -sq -rnp read -o /tmp/tmpeusBIu/454-se-random-N100-nm200-ne20-s0-sq.fastq random.fasta mason 454 -N 100 -nm 200 -ne 20 -s 0 -sq -rnp read -o /tmp/tmpeusBIu/454-se-random-N100-nm200-ne20-s0-sq.fastq random.fasta OK 13: mason illumina -N 100 -n 36 -s 0 -rnp read -o /tmp/tmpeusBIu/illumina-se-random-N100-n36-s0.fasta random.fasta mason illumina -N 100 -n 36 -s 0 -rnp read -o /tmp/tmpeusBIu/illumina-se-random-N100-n36-s0.fasta random.fasta OK 13: mason illumina -N 100 -n 36 -s 0 -sq -rnp read -o /tmp/tmpeusBIu/illumina-se-random-N100-n36-s0-sq.fastq random.fasta mason illumina -N 100 -n 36 -s 0 -sq -rnp read -o /tmp/tmpeusBIu/illumina-se-random-N100-n36-s0-sq.fastq random.fasta OK 13: mason illumina -N 100 -n 100 -s 0 -rnp read -o /tmp/tmpeusBIu/illumina-se-random-N100-n100-s0.fasta random.fasta mason illumina -N 100 -n 100 -s 0 -rnp read -o /tmp/tmpeusBIu/illumina-se-random-N100-n100-s0.fasta random.fasta OK 13: mason illumina -N 100 -n 100 -s 0 -sq -rnp read -o /tmp/tmpeusBIu/illumina-se-random-N100-n100-s0-sq.fastq random.fasta mason illumina -N 100 -n 100 -s 0 -sq -rnp read -o /tmp/tmpeusBIu/illumina-se-random-N100-n100-s0-sq.fastq random.fasta OK 13: mason illumina -N 100 -n 36 -s 0 -rnp read -o /tmp/tmpeusBIu/illumina-se-adeno-N100-n36-s0.fasta /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/tests/adeno-genome.fa mason illumina -N 100 -n 36 -s 0 -rnp read -o /tmp/tmpeusBIu/illumina-se-adeno-N100-n36-s0.fasta /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/tests/adeno-genome.fa OK 13: mason illumina -N 100 -n 36 -s 0 -sq -rnp read -o /tmp/tmpeusBIu/illumina-se-adeno-N100-n36-s0-sq.fastq /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/tests/adeno-genome.fa mason illumina -N 100 -n 36 -s 0 -sq -rnp read -o /tmp/tmpeusBIu/illumina-se-adeno-N100-n36-s0-sq.fastq /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/tests/adeno-genome.fa OK 13: mason illumina -N 100 -n 100 -s 0 -rnp read -o /tmp/tmpeusBIu/illumina-se-adeno-N100-n100-s0.fasta /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/tests/adeno-genome.fa mason illumina -N 100 -n 100 -s 0 -rnp read -o /tmp/tmpeusBIu/illumina-se-adeno-N100-n100-s0.fasta /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/tests/adeno-genome.fa OK 13: mason illumina -N 100 -n 100 -s 0 -sq -rnp read -o /tmp/tmpeusBIu/illumina-se-adeno-N100-n100-s0-sq.fastq /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/tests/adeno-genome.fa mason illumina -N 100 -n 100 -s 0 -sq -rnp read -o /tmp/tmpeusBIu/illumina-se-adeno-N100-n100-s0-sq.fastq /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/tests/adeno-genome.fa OK 13: mason illumina -mp -N 100 -n 36 -s 0 -rnp read -o /tmp/tmpeusBIu/illumina-pe-random-N100-n36-s0.fasta random.fasta mason illumina -mp -N 100 -n 36 -s 0 -rnp read -o /tmp/tmpeusBIu/illumina-pe-random-N100-n36-s0.fasta random.fasta OK 13: mason illumina -mp -N 100 -n 36 -s 0 -sq -rnp read -o /tmp/tmpeusBIu/illumina-pe-random-N100-n36-s0-sq.fastq random.fasta mason illumina -mp -N 100 -n 36 -s 0 -sq -rnp read -o /tmp/tmpeusBIu/illumina-pe-random-N100-n36-s0-sq.fastq random.fasta OK 13: mason illumina -mp -N 100 -n 100 -s 0 -rnp read -o /tmp/tmpeusBIu/illumina-pe-random-N100-n100-s0.fasta random.fasta mason illumina -mp -N 100 -n 100 -s 0 -rnp read -o /tmp/tmpeusBIu/illumina-pe-random-N100-n100-s0.fasta random.fasta OK 13: mason illumina -mp -N 100 -n 100 -s 0 -sq -rnp read -o /tmp/tmpeusBIu/illumina-pe-random-N100-n100-s0-sq.fastq random.fasta mason illumina -mp -N 100 -n 100 -s 0 -sq -rnp read -o /tmp/tmpeusBIu/illumina-pe-random-N100-n100-s0-sq.fastq random.fasta OK 13: mason sanger -N 100 -nm 400 -ne 40 -s 0 -rnp read -o /tmp/tmpeusBIu/sanger-se-random-N100-nm400-ne40-s0.fasta random.fasta mason sanger -N 100 -nm 400 -ne 40 -s 0 -rnp read -o /tmp/tmpeusBIu/sanger-se-random-N100-nm400-ne40-s0.fasta random.fasta OK 13: mason sanger -N 100 -nm 400 -ne 40 -s 0 -sq -rnp read -o /tmp/tmpeusBIu/sanger-se-random-N100-nm400-ne40-s0-sq.fastq random.fasta mason sanger -N 100 -nm 400 -ne 40 -s 0 -sq -rnp read -o /tmp/tmpeusBIu/sanger-se-random-N100-nm400-ne40-s0-sq.fastq random.fasta OK 13: mason sanger -N 100 -nm 200 -ne 20 -s 0 -rnp read -o /tmp/tmpeusBIu/sanger-se-random-N100-nm200-ne20-s0.fasta random.fasta mason sanger -N 100 -nm 200 -ne 20 -s 0 -rnp read -o /tmp/tmpeusBIu/sanger-se-random-N100-nm200-ne20-s0.fasta random.fasta OK 13: DELETING TEMP DIR /tmp/tmpeusBIu 13: mason sanger -N 100 -nm 200 -ne 20 -s 0 -sq -rnp read -o /tmp/tmpeusBIu/sanger-se-random-N100-nm200-ne20-s0-sq.fastq random.fasta mason sanger -N 100 -nm 200 -ne 20 -s 0 -sq -rnp read -o /tmp/tmpeusBIu/sanger-se-random-N100-nm200-ne20-s0-sq.fastq random.fasta OK 13: ============================== 13: total tests: 20 13: failed tests: 0 13: successful tests: 20 13: ============================== 12/28 Test #13: app_test_mason ................... Passed 2.90 sec test 14 Start 14: app_test_dfi 14: Test command: /usr/bin/python2 "/builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/tests/run_tests.py" "/builddir/build/BUILD/seqan-1.4.2" "/builddir/build/BUILD/seqan-1.4.2/build/Release" 14: Test timeout computed to be: 9.99988e+06 12: Executing test for micro_razers 12: ========================= 12: 12: micro_razers /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpELdM6N/se-adeno-reads36_1_default.out OK 12: micro_razers -sL 14 /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpELdM6N/se-adeno-reads36_1_sl14.out OK 12: micro_razers -sL 14 -sE /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpELdM6N/se-adeno-reads36_1_sl14_se.out OK 12: micro_razers -sL 15 /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpELdM6N/se-adeno-reads36_1_sl15.out OK 12: DELETING TEMP DIR /tmp/tmpELdM6N 12: micro_razers -sL 15 -sE /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpELdM6N/se-adeno-reads36_1_sl15_se.out OK 12: micro_razers -sL 16 /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpELdM6N/se-adeno-reads36_1_sl16.out OK 12: micro_razers -sL 16 -sE /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpELdM6N/se-adeno-reads36_1_sl16_se.out OK 12: micro_razers -sL 17 /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpELdM6N/se-adeno-reads36_1_sl17.out OK 12: micro_razers -sL 17 -sE /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpELdM6N/se-adeno-reads36_1_sl17_se.out OK 12: micro_razers -sL 18 /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpELdM6N/se-adeno-reads36_1_sl18.out OK 12: micro_razers -sL 18 -sE /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpELdM6N/se-adeno-reads36_1_sl18_se.out OK 12: micro_razers -sL 19 /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpELdM6N/se-adeno-reads36_1_sl19.out OK 12: micro_razers -sL 19 -sE /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpELdM6N/se-adeno-reads36_1_sl19_se.out OK 12: micro_razers -sL 20 /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpELdM6N/se-adeno-reads36_1_sl20.out OK 12: micro_razers -sL 20 -sE /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpELdM6N/se-adeno-reads36_1_sl20_se.out OK 12: micro_razers -sL 18 -m 20 -pa /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/tests/adeno-reads36_1.fa -o /tmp/tmpELdM6N/se-adeno-reads36_1_sl18_m20_pa.out OK 12: ============================== 12: total tests: 16 12: failed tests: 0 12: successful tests: 16 12: ============================== 13/28 Test #12: app_test_micro_razers ............ Passed 8.83 sec test 15 Start 15: app_test_variant_comp 15: Test command: /usr/bin/python2 "/builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/run_tests.py" "/builddir/build/BUILD/seqan-1.4.2" "/builddir/build/BUILD/seqan-1.4.2/build/Release" 15: Test timeout computed to be: 9.99988e+06 15: Executing test for variant_comp 15: =============================== 15: 15: variant_comp /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/adeno.fa -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/gold_standard.gff -ip /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/predicted_full.gff -pt 10 -st 10 -v -o /tmp/tmpLuyaIB/predicted_full_pt10_st10_out.txt -on /tmp/tmpLuyaIB/predicted_full_pt10_st10_outFN.txt OK 15: variant_comp /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/adeno.fa -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/gold_standard.gff -ip /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/predicted_full.gff -pt 1 -st 10 -v -o /tmp/tmpLuyaIB/predicted_full_pt1_st10_out.txt -on /tmp/tmpLuyaIB/predicted_full_pt1_st10_outFN.txt OK 15: DELETING TEMP DIR /tmp/tmpLuyaIB 15: variant_comp /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/adeno.fa -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/gold_standard.gff -ip /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/predicted_full.gff -pt 10 -st 1 -v -o /tmp/tmpLuyaIB/predicted_full_pt10_st1_out.txt -on /tmp/tmpLuyaIB/predicted_full_pt10_st1_outFN.txt OK 15: variant_comp /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/adeno.fa -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/gold_standard.gff -ip /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/predicted_full.gff -pt 1 -st 1 -v -o /tmp/tmpLuyaIB/predicted_full_pt1_st1_out.txt -on /tmp/tmpLuyaIB/predicted_full_pt1_st1_outFN.txt OK 15: variant_comp /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/adeno.fa -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/gold_standard.gff -ip /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/predicted_wrong.gff -pt 10 -st 10 -v -o /tmp/tmpLuyaIB/predicted_wrong_pt10_st10_out.txt -on /tmp/tmpLuyaIB/predicted_wrong_pt10_st10_outFN.txt OK 15: variant_comp /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/adeno.fa -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/gold_standard.gff -ip /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/predicted_wrong.gff -pt 1 -st 10 -v -o /tmp/tmpLuyaIB/predicted_wrong_pt1_st10_out.txt -on /tmp/tmpLuyaIB/predicted_wrong_pt1_st10_outFN.txt OK 15: variant_comp /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/adeno.fa -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/gold_standard.gff -ip /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/predicted_wrong.gff -pt 10 -st 1 -v -o /tmp/tmpLuyaIB/predicted_wrong_pt10_st1_out.txt -on /tmp/tmpLuyaIB/predicted_wrong_pt10_st1_outFN.txt OK 15: variant_comp /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/adeno.fa -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/gold_standard.gff -ip /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/predicted_wrong.gff -pt 1 -st 1 -v -o /tmp/tmpLuyaIB/predicted_wrong_pt1_st1_out.txt -on /tmp/tmpLuyaIB/predicted_wrong_pt1_st1_outFN.txt OK 15: variant_comp /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/adeno.fa -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/gold_standard.gff -ip /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/gold_standard.gff -pt 10 -st 10 -v -o /tmp/tmpLuyaIB/gold_standard_pt10_st10_out.txt -on /tmp/tmpLuyaIB/gold_standard_pt10_st10_outFN.txt OK 15: variant_comp /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/adeno.fa -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/gold_standard.gff -ip /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/gold_standard.gff -pt 1 -st 10 -v -o /tmp/tmpLuyaIB/gold_standard_pt1_st10_out.txt -on /tmp/tmpLuyaIB/gold_standard_pt1_st10_outFN.txt OK 15: variant_comp /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/adeno.fa -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/gold_standard.gff -ip /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/gold_standard.gff -pt 10 -st 1 -v -o /tmp/tmpLuyaIB/gold_standard_pt10_st1_out.txt -on /tmp/tmpLuyaIB/gold_standard_pt10_st1_outFN.txt OK 15: variant_comp /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/adeno.fa -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/gold_standard.gff -ip /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/tests/gold_standard.gff -pt 1 -st 1 -v -o /tmp/tmpLuyaIB/gold_standard_pt1_st1_out.txt -on /tmp/tmpLuyaIB/gold_standard_pt1_st1_outFN.txt OK 15: ============================== 15: total tests: 12 15: failed tests: 0 15: successful tests: 12 15: ============================== 14/28 Test #15: app_test_variant_comp ............ Passed 0.10 sec test 16 Start 16: app_test_sgip 16: Test command: /usr/bin/python2 "/builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/tests/run_tests.py" "/builddir/build/BUILD/seqan-1.4.2" "/builddir/build/BUILD/seqan-1.4.2/build/Release" 16: Test timeout computed to be: 9.99988e+06 16: DELETING TEMP DIR /tmp/tmpTHiOrX 16: Executing test for sgip 16: ========================= 16: 16: sgip -o /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/tests/../example/r01/iso_r01_m200.A00 -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/tests/../example/r01/iso_r01_m200.B00 -v 2 -i OK 16: sgip -o /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/tests/../example/r01/iso_r01_m200.A01 -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/tests/../example/r01/iso_r01_m200.B01 -v 2 -i OK 16: sgip -o /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/tests/../example/r01/iso_r01_m200.A00 -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/tests/../example/r01/iso_r01_m200.B01 -v 2 -i OK 16: sgip -o /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/tests/../example/r01/iso_r01_m200.A00 -v 2 OK 16: sgip -o /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/tests/../example/srg/latin-4 -v 2 OK 16: sgip -o /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/tests/../example/srg/lattice-4 -v 2 OK 16: sgip -o /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/tests/../example/srg/paley-5 -v 2 OK 16: sgip -o /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/tests/../example/srg/sts-7 -v 2 OK 16: sgip -o /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/tests/../example/srg/triang-5 -v 2 OK 16: ============================== 16: total tests: 9 16: failed tests: 0 16: successful tests: 9 16: ============================== 15/28 Test #16: app_test_sgip .................... Passed 0.92 sec test 17 Start 17: app_test_seqan_flexbar 17: Test command: /usr/bin/python2 "/builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/tests/run_tests.py" "/builddir/build/BUILD/seqan-1.4.2" "/builddir/build/BUILD/seqan-1.4.2/build/Release" 17: Test timeout computed to be: 9.99988e+06 17: Executing test for seqan_flexbar 17: ================================ 17: 17: /builddir/build/BUILD/seqan-1.4.2/build/Release/bin/sflexQC /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/tests/testsample.fq -q 20 -o /tmp/tmpfWTzAO/qc_test.fa -t -ni OK 17: /builddir/build/BUILD/seqan-1.4.2/build/Release/bin/sflexFilter /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/tests/testsample.fq -tl 3 -tr 4 -ml 70 -u 1 -s A -fl 70 -ni -o /tmp/tmpfWTzAO/filter_test.fq OK 17: /builddir/build/BUILD/seqan-1.4.2/build/Release/bin/sflexAR /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/tests/testsample.fq -a /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/tests/adapter.fasta -o /tmp/tmpfWTzAO/ar_test.fq -ni OK 17: /builddir/build/BUILD/seqan-1.4.2/build/Release/bin/sflexDMulti /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/tests/testsample_multiplex.fq -b /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/tests/barcodes.fasta -o /tmp/tmpfWTzAO/test_de_multi.fastq -ni OK 17: DELETING TEMP DIR /tmp/tmpfWTzAO 17: ============================== 17: total tests: 4 17: failed tests: 0 17: successful tests: 4 17: ============================== 16/28 Test #17: app_test_seqan_flexbar ........... Passed 0.10 sec test 18 Start 18: app_test_searchjoin 18: Test command: /usr/bin/python2 "/builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/tests/run_tests.py" "/builddir/build/BUILD/seqan-1.4.2" "/builddir/build/BUILD/seqan-1.4.2/build/Release" 18: Test timeout computed to be: 9.99988e+06 18: Executing test for searchjoin 18: =========================== 18: 18: /builddir/build/BUILD/seqan-1.4.2/build/Release/bin/join /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/tests/geo_database.csv 0 -i geo -t 4 -sl 5 -o /tmp/tmpEE_dFn/join_geo_0_5.out OK 18: /builddir/build/BUILD/seqan-1.4.2/build/Release/bin/join /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/tests/geo_database.csv 1 -i geo -t 4 -sl 5 -o /tmp/tmpEE_dFn/join_geo_1_5.out OK 18: /builddir/build/BUILD/seqan-1.4.2/build/Release/bin/join /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/tests/geo_database.csv 3 -i geo -t 4 -sl 5 -o /tmp/tmpEE_dFn/join_geo_3_5.out OK 18: /builddir/build/BUILD/seqan-1.4.2/build/Release/bin/join /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/tests/dna_database.csv 0 -i dna -t 4 -sl 10 -o /tmp/tmpEE_dFn/join_dna_0_10.out OK 18: DELETING TEMP DIR /tmp/tmpEE_dFn 18: /builddir/build/BUILD/seqan-1.4.2/build/Release/bin/join /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/tests/dna_database.csv 8 -i dna -t 4 -sl 10 -o /tmp/tmpEE_dFn/join_dna_8_10.out OK 18: /builddir/build/BUILD/seqan-1.4.2/build/Release/bin/join /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/tests/dna_database.csv 16 -i dna -t 4 -sl 10 -o /tmp/tmpEE_dFn/join_dna_16_10.out OK 18: /builddir/build/BUILD/seqan-1.4.2/build/Release/bin/search /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/tests/geo_database.csv /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/tests/geo_queries.csv --no-wait -i geo -t 4 -sl 5 -o /tmp/tmpEE_dFn/search_geo_5.out OK 18: /builddir/build/BUILD/seqan-1.4.2/build/Release/bin/search /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/tests/dna_database.csv /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/tests/dna_queries.csv --no-wait -i dna -t 4 -sl 10 -o /tmp/tmpEE_dFn/search_dna_10.out OK 18: ============================== 18: total tests: 8 18: failed tests: 0 18: successful tests: 8 18: ============================== 17/28 Test #18: app_test_searchjoin .............. Passed 15.73 sec test 19 Start 19: app_test_razers3 19: Test command: /usr/bin/python2 "/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/run_tests.py" "/builddir/build/BUILD/seqan-1.4.2" "/builddir/build/BUILD/seqan-1.4.2/build/Release" 19: Test timeout computed to be: 9.99988e+06 19: Executing test for razers3 19: =========================== 19: 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads36_1-tc1.razers OK 19: razers3 -tc 1 -ng /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads36_1-ng-tc1.razers OK 19: razers3 -tc 1 -r /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads36_1-r-tc1.razers OK 19: razers3 -tc 1 -f /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads36_1-f-tc1.razers OK 19: razers3 -tc 1 -i 90 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads36_1-i90-tc1.razers OK 19: razers3 -tc 1 -i 91 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads36_1-i91-tc1.razers OK 19: razers3 -tc 1 -i 92 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads36_1-i92-tc1.razers OK 19: razers3 -tc 1 -i 93 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads36_1-i93-tc1.razers OK 19: razers3 -tc 1 -i 94 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads36_1-i94-tc1.razers OK 19: razers3 -tc 1 -i 95 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads36_1-i95-tc1.razers OK 19: razers3 -tc 1 -i 96 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads36_1-i96-tc1.razers OK 19: razers3 -tc 1 -i 97 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads36_1-i97-tc1.razers OK 19: razers3 -tc 1 -i 98 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads36_1-i98-tc1.razers OK 19: razers3 -tc 1 -i 99 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads36_1-i99-tc1.razers OK 19: razers3 -tc 1 -i 100 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads36_1-i100-tc1.razers OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads36_1-of0-tc1.razers OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads36_1-of1-tc1.fa OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads36_1-of2-tc1.eland OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads36_1-of3-tc1.gff OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads36_1-of4-tc1.sam OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads36_1-of5-tc1.afg OK 19: razers3 -tc 1 -so 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads36_1-so0-tc1.razers OK 19: razers3 -tc 1 -so 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads36_1-so1-tc1.razers OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads100_1-tc1.razers OK 19: razers3 -tc 1 -ng /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads100_1-ng-tc1.razers OK 19: razers3 -tc 1 -r /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads100_1-r-tc1.razers OK 19: razers3 -tc 1 -f /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads100_1-f-tc1.razers OK 19: razers3 -tc 1 -i 90 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads100_1-i90-tc1.razers OK 19: razers3 -tc 1 -i 91 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads100_1-i91-tc1.razers OK 19: razers3 -tc 1 -i 92 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads100_1-i92-tc1.razers OK 19: razers3 -tc 1 -i 93 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads100_1-i93-tc1.razers OK 19: razers3 -tc 1 -i 94 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads100_1-i94-tc1.razers OK 19: razers3 -tc 1 -i 95 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads100_1-i95-tc1.razers OK 19: razers3 -tc 1 -i 96 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads100_1-i96-tc1.razers OK 19: razers3 -tc 1 -i 97 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads100_1-i97-tc1.razers OK 19: razers3 -tc 1 -i 98 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads100_1-i98-tc1.razers OK 19: razers3 -tc 1 -i 99 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads100_1-i99-tc1.razers OK 19: razers3 -tc 1 -i 100 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads100_1-i100-tc1.razers OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads100_1-of0-tc1.razers OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads100_1-of1-tc1.fa OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads100_1-of2-tc1.eland OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads100_1-of3-tc1.gff OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads100_1-of4-tc1.sam OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads100_1-of5-tc1.afg OK 19: razers3 -tc 1 -so 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads100_1-so0-tc1.razers OK 19: razers3 -tc 1 -so 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmpmZUj7_/se-adeno-reads100_1-so1-tc1.razers OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads36_2-tc1.razers OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads36_2-tc1.razers OK 19: razers3 -tc 1 -r /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads36_2-r-tc1.razers OK 19: razers3 -tc 1 -f /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads36_2-f-tc1.razers OK 19: razers3 -tc 1 -i 90 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads36_2-i90-tc1.razers OK 19: razers3 -tc 1 -i 91 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads36_2-i91-tc1.razers OK 19: razers3 -tc 1 -i 92 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads36_2-i92-tc1.razers OK 19: razers3 -tc 1 -i 93 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads36_2-i93-tc1.razers OK 19: razers3 -tc 1 -i 94 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads36_2-i94-tc1.razers OK 19: razers3 -tc 1 -i 95 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads36_2-i95-tc1.razers OK 19: razers3 -tc 1 -i 96 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads36_2-i96-tc1.razers OK 19: razers3 -tc 1 -i 97 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads36_2-i97-tc1.razers OK 19: razers3 -tc 1 -i 98 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads36_2-i98-tc1.razers OK 19: razers3 -tc 1 -i 99 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads36_2-i99-tc1.razers OK 19: razers3 -tc 1 -i 100 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads36_2-i100-tc1.razers OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads36_2-of0-tc1.razers OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads36_2-of1-tc1.fa OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads36_2-of2-tc1.eland OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads36_2-of3-tc1.gff OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads36_2-of4-tc1.sam OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads36_2-of5-tc1.afg OK 19: razers3 -tc 1 -so 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads36_2-so0-tc1.razers OK 19: razers3 -tc 1 -so 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads36_2-so1-tc1.razers OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads100_2-tc1.razers OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads100_2-tc1.razers OK 19: razers3 -tc 1 -r /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads100_2-r-tc1.razers OK 19: razers3 -tc 1 -f /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads100_2-f-tc1.razers OK 19: razers3 -tc 1 -i 90 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads100_2-i90-tc1.razers OK 19: razers3 -tc 1 -i 91 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads100_2-i91-tc1.razers OK 19: razers3 -tc 1 -i 92 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads100_2-i92-tc1.razers OK 19: razers3 -tc 1 -i 93 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads100_2-i93-tc1.razers OK 19: razers3 -tc 1 -i 94 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads100_2-i94-tc1.razers OK 19: razers3 -tc 1 -i 95 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads100_2-i95-tc1.razers OK 19: razers3 -tc 1 -i 96 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads100_2-i96-tc1.razers OK 19: razers3 -tc 1 -i 97 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads100_2-i97-tc1.razers OK 19: DELETING TEMP DIR /tmp/tmpmZUj7_ 19: razers3 -tc 1 -i 98 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads100_2-i98-tc1.razers OK 19: razers3 -tc 1 -i 99 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads100_2-i99-tc1.razers OK 19: razers3 -tc 1 -i 100 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads100_2-i100-tc1.razers OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads100_2-of0-tc1.razers OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads100_2-of1-tc1.fa OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads100_2-of2-tc1.eland OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads100_2-of3-tc1.gff OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads100_2-of4-tc1.sam OK 19: razers3 -tc 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads100_2-of5-tc1.afg OK 19: razers3 -tc 1 -so 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads100_2-so0-tc1.razers OK 19: razers3 -tc 1 -so 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmpmZUj7_/pe-adeno-reads100_2-so1-tc1.razers OK 19: ============================== 19: total tests: 92 19: failed tests: 0 19: successful tests: 92 19: ============================== 18/28 Test #19: app_test_razers3 ................. Passed 2.95 sec test 20 Start 20: app_test_razers3_sequential 20: Test command: /usr/bin/python2 "/builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/run_tests_sequential.py" "/builddir/build/BUILD/seqan-1.4.2" "/builddir/build/BUILD/seqan-1.4.2/build/Release" 20: Test timeout computed to be: 9.99988e+06 20: Executing test for razers3 20: =========================== 20: 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads36_1-tc0.razers OK 20: razers3 -tc 0 -ng /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads36_1-ng-tc0.razers OK 20: razers3 -tc 0 -r /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads36_1-r-tc0.razers OK 20: razers3 -tc 0 -f /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads36_1-f-tc0.razers OK 20: razers3 -tc 0 -i 90 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads36_1-i90-tc0.razers OK 20: razers3 -tc 0 -i 91 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads36_1-i91-tc0.razers OK 20: razers3 -tc 0 -i 92 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads36_1-i92-tc0.razers OK 20: razers3 -tc 0 -i 93 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads36_1-i93-tc0.razers OK 20: razers3 -tc 0 -i 94 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads36_1-i94-tc0.razers OK 20: razers3 -tc 0 -i 95 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads36_1-i95-tc0.razers OK 20: razers3 -tc 0 -i 96 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads36_1-i96-tc0.razers OK 20: razers3 -tc 0 -i 97 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads36_1-i97-tc0.razers OK 20: razers3 -tc 0 -i 98 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads36_1-i98-tc0.razers OK 20: razers3 -tc 0 -i 99 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads36_1-i99-tc0.razers OK 20: razers3 -tc 0 -i 100 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads36_1-i100-tc0.razers OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads36_1-of0-tc0.razers OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads36_1-of1-tc0.fa OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads36_1-of2-tc0.eland OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads36_1-of3-tc0.gff OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads36_1-of4-tc0.sam OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads36_1-of5-tc0.afg OK 20: razers3 -tc 0 -so 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads36_1-so0-tc0.razers OK 20: razers3 -tc 0 -so 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads36_1-so1-tc0.razers OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads100_1-tc0.razers OK 20: razers3 -tc 0 -ng /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads100_1-ng-tc0.razers OK 20: razers3 -tc 0 -r /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads100_1-r-tc0.razers OK 20: razers3 -tc 0 -f /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads100_1-f-tc0.razers OK 20: razers3 -tc 0 -i 90 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads100_1-i90-tc0.razers OK 20: razers3 -tc 0 -i 91 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads100_1-i91-tc0.razers OK 20: razers3 -tc 0 -i 92 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads100_1-i92-tc0.razers OK 20: razers3 -tc 0 -i 93 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads100_1-i93-tc0.razers OK 20: razers3 -tc 0 -i 94 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads100_1-i94-tc0.razers OK 20: razers3 -tc 0 -i 95 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads100_1-i95-tc0.razers OK 20: razers3 -tc 0 -i 96 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads100_1-i96-tc0.razers OK 20: razers3 -tc 0 -i 97 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads100_1-i97-tc0.razers OK 20: razers3 -tc 0 -i 98 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads100_1-i98-tc0.razers OK 20: razers3 -tc 0 -i 99 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads100_1-i99-tc0.razers OK 20: razers3 -tc 0 -i 100 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads100_1-i100-tc0.razers OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads100_1-of0-tc0.razers OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads100_1-of1-tc0.fa OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads100_1-of2-tc0.eland OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads100_1-of3-tc0.gff OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads100_1-of4-tc0.sam OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads100_1-of5-tc0.afg OK 20: razers3 -tc 0 -so 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads100_1-so0-tc0.razers OK 20: razers3 -tc 0 -so 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa -o /tmp/tmp7t74kJ/se-adeno-reads100_1-so1-tc0.razers OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads36_2-tc0.razers OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads36_2-tc0.razers OK 20: razers3 -tc 0 -r /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads36_2-r-tc0.razers OK 20: razers3 -tc 0 -f /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads36_2-f-tc0.razers OK 20: razers3 -tc 0 -i 90 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads36_2-i90-tc0.razers OK 20: razers3 -tc 0 -i 91 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads36_2-i91-tc0.razers OK 20: razers3 -tc 0 -i 92 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads36_2-i92-tc0.razers OK 20: razers3 -tc 0 -i 93 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads36_2-i93-tc0.razers OK 20: razers3 -tc 0 -i 94 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads36_2-i94-tc0.razers OK 20: razers3 -tc 0 -i 95 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads36_2-i95-tc0.razers OK 20: razers3 -tc 0 -i 96 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads36_2-i96-tc0.razers OK 20: razers3 -tc 0 -i 97 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads36_2-i97-tc0.razers OK 20: razers3 -tc 0 -i 98 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads36_2-i98-tc0.razers OK 20: razers3 -tc 0 -i 99 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads36_2-i99-tc0.razers OK 20: razers3 -tc 0 -i 100 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads36_2-i100-tc0.razers OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads36_2-of0-tc0.razers OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads36_2-of1-tc0.fa OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads36_2-of2-tc0.eland OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads36_2-of3-tc0.gff OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads36_2-of4-tc0.sam OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads36_2-of5-tc0.afg OK 20: razers3 -tc 0 -so 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads36_2-so0-tc0.razers OK 20: razers3 -tc 0 -so 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads36_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads36_2-so1-tc0.razers OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads100_2-tc0.razers OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads100_2-tc0.razers OK 20: razers3 -tc 0 -r /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads100_2-r-tc0.razers OK 20: razers3 -tc 0 -f /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads100_2-f-tc0.razers OK 20: razers3 -tc 0 -i 90 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads100_2-i90-tc0.razers OK 20: razers3 -tc 0 -i 91 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads100_2-i91-tc0.razers OK 20: razers3 -tc 0 -i 92 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads100_2-i92-tc0.razers OK 20: razers3 -tc 0 -i 93 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads100_2-i93-tc0.razers OK 20: razers3 -tc 0 -i 94 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads100_2-i94-tc0.razers OK 20: razers3 -tc 0 -i 95 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads100_2-i95-tc0.razers OK 20: razers3 -tc 0 -i 96 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads100_2-i96-tc0.razers OK 20: razers3 -tc 0 -i 97 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads100_2-i97-tc0.razers OK 20: DELETING TEMP DIR /tmp/tmp7t74kJ 20: razers3 -tc 0 -i 98 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads100_2-i98-tc0.razers OK 20: razers3 -tc 0 -i 99 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads100_2-i99-tc0.razers OK 20: razers3 -tc 0 -i 100 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads100_2-i100-tc0.razers OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads100_2-of0-tc0.razers OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads100_2-of1-tc0.fa OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads100_2-of2-tc0.eland OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads100_2-of3-tc0.gff OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads100_2-of4-tc0.sam OK 20: razers3 -tc 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads100_2-of5-tc0.afg OK 20: razers3 -tc 0 -so 0 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads100_2-so0-tc0.razers OK 20: razers3 -tc 0 -so 1 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-genome.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_1.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/tests/adeno-reads100_2.fa -o /tmp/tmp7t74kJ/pe-adeno-reads100_2-so1-tc0.razers OK 20: ============================== 20: total tests: 92 20: failed tests: 0 20: successful tests: 92 20: ============================== 19/28 Test #20: app_test_razers3_sequential ...... Passed 2.71 sec test 21 Start 21: test_test_funcs_param_chooser 21: Test command: /builddir/build/BUILD/seqan-1.4.2/build/Release/bin/test_funcs_param_chooser 21: Test timeout computed to be: 9.99988e+06 21: TEST SUITE test_param_chooser 21: SEQAN_ENABLE_DEBUG == 1 21: SEQAN_ENABLE_TESTING == 1 21: SEQAN_ENABLE_CHECKPOINTS == 0 21: SEQAN_CXX_FLAGS == "SEQAN_CXX_FLAGS_NOT_SET" 21: test_param_chooser_quality_distribution_from_prb_file OK 21: test_param_chooser_quality_distribution_from_fastq_file OK 21: test_param_chooser_quality_distribution_from_fastq_int_file OK 21: test_param_chooser_parse_gapped_params OK 21: test_param_parse_shapes_from_file OK 21: ************************************** 21: Total Check Points : 0 21: Found Check Points : 0 21: Lost Check Points : 0 21: -------------------------------------- 21: Total Tests: 5 21: Skipped: 0 21: Errors: 0 21: ************************************** 20/28 Test #21: test_test_funcs_param_chooser .... Passed 0.10 sec test 22 Start 22: app_test_ngs_roi 22: Test command: /usr/bin/python2 "/builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/run_tests.py" "/builddir/build/BUILD/seqan-1.4.2" "/builddir/build/BUILD/seqan-1.4.2/build/Release" 22: Test timeout computed to be: 9.99988e+06 22: Executing test for roi_intersect 22: ================================ 22: 22: roi_feature_projection -m projection -ss -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.roi -if /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.bed -or /tmp/tmps0FIVR/out_small_bed_mprojection_ss.roi OK 22: roi_feature_projection -m projection -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.roi -if /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.bed -or /tmp/tmps0FIVR/out_small_bed_mprojection.roi OK 22: roi_feature_projection -m projection -ss -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.roi -if /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.gff -or /tmp/tmps0FIVR/out_small_gff_mprojection_ss.roi OK 22: roi_feature_projection -m projection -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.roi -if /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.gff -or /tmp/tmps0FIVR/out_small_gff_mprojection.roi OK 22: roi_feature_projection -m projection -ss -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.roi -if /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.gtf -or /tmp/tmps0FIVR/out_small_gtf_mprojection_ss.roi OK 22: roi_feature_projection -m projection -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.roi -if /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.gtf -or /tmp/tmps0FIVR/out_small_gtf_mprojection.roi OK 22: roi_feature_projection -m union -ss -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.roi -if /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.bed -or /tmp/tmps0FIVR/out_small_bed_munion_ss.roi OK 22: roi_feature_projection -m union -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.roi -if /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.bed -or /tmp/tmps0FIVR/out_small_bed_munion.roi OK 22: roi_feature_projection -m union -ss -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.roi -if /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.gff -or /tmp/tmps0FIVR/out_small_gff_munion_ss.roi OK 22: roi_feature_projection -m union -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.roi -if /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.gff -or /tmp/tmps0FIVR/out_small_gff_munion.roi OK 22: roi_feature_projection -m union -ss -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.roi -if /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.gtf -or /tmp/tmps0FIVR/out_small_gtf_munion_ss.roi OK 22: roi_feature_projection -m union -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.roi -if /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.gtf -or /tmp/tmps0FIVR/out_small_gtf_munion.roi OK 22: roi_feature_projection -m difference -ss -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.roi -if /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.bed -or /tmp/tmps0FIVR/out_small_bed_mdifference_ss.roi OK 22: roi_feature_projection -m difference -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.roi -if /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.bed -or /tmp/tmps0FIVR/out_small_bed_mdifference.roi OK 22: roi_feature_projection -m difference -ss -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.roi -if /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.gff -or /tmp/tmps0FIVR/out_small_gff_mdifference_ss.roi OK 22: roi_feature_projection -m difference -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.roi -if /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.gff -or /tmp/tmps0FIVR/out_small_gff_mdifference.roi OK 22: roi_feature_projection -m difference -ss -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.roi -if /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.gtf -or /tmp/tmps0FIVR/out_small_gtf_mdifference_ss.roi OK 22: roi_feature_projection -m difference -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.roi -if /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.gtf -or /tmp/tmps0FIVR/out_small_gtf_mdifference.roi OK 22: roi_feature_projection -m intersection -ss -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.roi -if /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.bed -or /tmp/tmps0FIVR/out_small_bed_mintersection_ss.roi OK 22: roi_feature_projection -m intersection -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.roi -if /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.bed -or /tmp/tmps0FIVR/out_small_bed_mintersection.roi OK 22: roi_feature_projection -m intersection -ss -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.roi -if /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.gff -or /tmp/tmps0FIVR/out_small_gff_mintersection_ss.roi OK 22: DELETING TEMP DIR /tmp/tmps0FIVR 22: roi_feature_projection -m intersection -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.roi -if /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.gff -or /tmp/tmps0FIVR/out_small_gff_mintersection.roi OK 22: roi_feature_projection -m intersection -ss -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.roi -if /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.gtf -or /tmp/tmps0FIVR/out_small_gtf_mintersection_ss.roi OK 22: roi_feature_projection -m intersection -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.roi -if /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/small.gtf -or /tmp/tmps0FIVR/out_small_gtf_mintersection.roi OK 22: bam2roi --strand-specific -if /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/micro_rna_sorted_2l.bam -of /tmp/tmps0FIVR/out_mrna_2l_ss.roi OK 22: bam2roi -if /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/tests/micro_rna_sorted_2l.bam -of /tmp/tmps0FIVR/out_mrna_2l.roi OK 22: ============================== 22: total tests: 26 22: failed tests: 0 22: successful tests: 26 22: ============================== 21/28 Test #22: app_test_ngs_roi ................. Passed 0.14 sec test 23 Start 23: app_test_mason2 23: Test command: /usr/bin/python2 "/builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/tests/run_tests.py" "/builddir/build/BUILD/seqan-1.4.2" "/builddir/build/BUILD/seqan-1.4.2/build/Release" 23: Test timeout computed to be: 9.99988e+06 23: Executing test for mason_variator 23: ====================== 23: 23: mason_genome -l 1000 -o /tmp/tmpe7xzqD/genome.test1.fasta OK 23: mason_genome -s 1 -l 1000 -l 100 -o /tmp/tmpe7xzqD/genome.test2.fasta OK 23: mason_variator -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/tests/random.fasta -n 2 -ov /tmp/tmpe7xzqD/random_var1.vcf -of /tmp/tmpe7xzqD/random_var1.fasta --snp-rate 0.001 --small-indel-rate 0.001 --sv-indel-rate 0.001 --sv-inversion-rate 0.001 --sv-translocation-rate 0.001 --sv-duplication-rate 0.001 --min-sv-size 50 --max-sv-size 100 --methylation-levels --meth-fasta-out /tmp/tmpe7xzqD/random_var1_meth.fasta --out-breakpoints /tmp/tmpe7xzqD/random_var1_bp.txt OK 23: mason_variator -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/tests/random.fasta -n 2 -ov /tmp/tmpe7xzqD/random_var2.vcf -of /tmp/tmpe7xzqD/random_var2.fasta --snp-rate 0.001 --small-indel-rate 0.001 --sv-indel-rate 0.001 --sv-inversion-rate 0.001 --sv-translocation-rate 0.001 --sv-duplication-rate 0.001 --min-sv-size 50 --max-sv-size 100 --methylation-levels --meth-fasta-in /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/tests/random_meth1.fasta --meth-fasta-out /tmp/tmpe7xzqD/random_var2_meth.fasta --out-breakpoints /tmp/tmpe7xzqD/random_var2_bp.txt OK 23: mason_variator -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/tests/random.fasta -n 2 -ov /tmp/tmpe7xzqD/random_var3.vcf -of /tmp/tmpe7xzqD/random_var3.fasta --snp-rate 0.001 --small-indel-rate 0.001 --sv-indel-rate 0.001 --sv-inversion-rate 0.001 --sv-translocation-rate 0.001 --sv-duplication-rate 0.001 --min-sv-size 50 --max-sv-size 100 --out-breakpoints /tmp/tmpe7xzqD/random_var3_bp.txt OK 23: mason_variator -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/tests/adeno_virus.fa -ov /tmp/tmpe7xzqD/random_var9.vcf -of /tmp/tmpe7xzqD/random_var9.fasta --sv-indel-rate 0.01 --sv-duplication-rate 0.01 --sv-inversion-rate 0.01 --min-sv-size 20 --max-sv-size 300 OK 23: mason_materializer -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/tests/random.fasta -iv /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/tests/random_var1.vcf -o /tmp/tmpe7xzqD/materializer.random_var1.fasta OK 23: mason_materializer -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/tests/random.fasta -iv /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/tests/random_var2.vcf -o /tmp/tmpe7xzqD/materializer.random_var2.fasta --meth-fasta-in /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/tests/random_meth1.fasta --meth-fasta-out /tmp/tmpe7xzqD/materializer.random_meth2.fasta OK 23: mason_simulator -n 1000 -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/tests/random.fasta -o /tmp/tmpe7xzqD/simulator.left1.fq -or /tmp/tmpe7xzqD/simulator.right1.fq -oa /tmp/tmpe7xzqD/simulator.out1.sam OK 23: mason_simulator -n 1000 -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/tests/random.fasta -iv /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/tests/random_var1.vcf -o /tmp/tmpe7xzqD/simulator.left2.fq -or /tmp/tmpe7xzqD/simulator.right2.fq -oa /tmp/tmpe7xzqD/simulator.out2.sam OK 23: mason_simulator -n 1000 -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/tests/random.fasta -o /tmp/tmpe7xzqD/simulator.left3.fa -or /tmp/tmpe7xzqD/simulator.right3.fa OK 23: mason_simulator -n 1000 -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/tests/random.fasta -iv /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/tests/random_var1.vcf -o /tmp/tmpe7xzqD/simulator.left7.fa -oa /tmp/tmpe7xzqD/simulator.out7.sam OK 23: mason_simulator -n 1000 -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/tests/random.fasta -o /tmp/tmpe7xzqD/simulator.left4.fa -oa /tmp/tmpe7xzqD/simulator.out4.sam OK 23: mason_simulator -n 1000 -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/tests/random.fasta --meth-fasta-in /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/tests/random_meth1.fasta --methylation-levels --enable-bs-seq -o /tmp/tmpe7xzqD/simulator.left5.fq -or /tmp/tmpe7xzqD/simulator.right5.fq OK 23: DELETING TEMP DIR /tmp/tmpe7xzqD 23: mason_simulator -n 1000 -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/tests/random.fasta -iv /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/tests/random_var1.vcf --meth-fasta-in /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/tests/random_meth1.fasta --methylation-levels --enable-bs-seq -o /tmp/tmpe7xzqD/simulator.left6.fq -or /tmp/tmpe7xzqD/simulator.right6.fq OK 23: mason_simulator --seq-technology 454 --fragment-mean-size 800 --454-read-length-mean 200 --454-read-length-stddev 20 -n 1000 -v -ir /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/tests/random.fasta -o /tmp/tmpe7xzqD/simulator.left8.fq -oa /tmp/tmpe7xzqD/simulator.out8.sam OK 23: ============================== 23: total tests: 16 23: failed tests: 0 23: successful tests: 16 23: ============================== 22/28 Test #23: app_test_mason2 .................. Passed 2.56 sec test 24 Start 24: app_test_insegt 24: Test command: /usr/bin/python2 "/builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/tests/run_tests.py" "/builddir/build/BUILD/seqan-1.4.2" "/builddir/build/BUILD/seqan-1.4.2/build/Release" 24: Test timeout computed to be: 9.99988e+06 24: Executing test for insegt 24: ========================= 24: 24: insegt -ro /tmp/tmpRuwc1q/default_readOutput.gff -ao /tmp/tmpRuwc1q/default_annoOutput.gff -to /tmp/tmpRuwc1q/default_tupleOutput.gff /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/tests/alignments.sam /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/tests/annotations.gff OK 24: insegt -c 2 -ro /tmp/tmpRuwc1q/threshold-count2_readOutput.gff -ao /tmp/tmpRuwc1q/threshold-count2_annoOutput.gff -to /tmp/tmpRuwc1q/threshold-count2_tupleOutput.gff /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/tests/alignments.sam /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/tests/annotations.gff OK 24: insegt -n 3 -ro /tmp/tmpRuwc1q/ntuple3_readOutput.gff -ao /tmp/tmpRuwc1q/ntuple3_annoOutput.gff -to /tmp/tmpRuwc1q/ntuple3_tupleOutput.gff /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/tests/alignments.sam /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/tests/annotations.gff OK 24: DELETING TEMP DIR /tmp/tmpRuwc1q 24: insegt -m -ro /tmp/tmpRuwc1q/max-tuple_readOutput.gff -ao /tmp/tmpRuwc1q/max-tuple_annoOutput.gff -to /tmp/tmpRuwc1q/max-tuple_tupleOutput.gff /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/tests/alignments.sam /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/tests/annotations.gff OK 24: insegt -e -ro /tmp/tmpRuwc1q/exact-ntuple_readOutput.gff -ao /tmp/tmpRuwc1q/exact-ntuple_annoOutput.gff -to /tmp/tmpRuwc1q/exact-ntuple_tupleOutput.gff /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/tests/alignments.sam /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/tests/annotations.gff OK 24: ============================== 24: total tests: 5 24: failed tests: 0 24: successful tests: 5 24: ============================== 23/28 Test #24: app_test_insegt .................. Passed 0.10 sec test 25 Start 25: app_test_gustaf 25: Test command: /usr/bin/python2 "/builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/tests/run_tests.py" "/builddir/build/BUILD/seqan-1.4.2" "/builddir/build/BUILD/seqan-1.4.2/build/Release" 25: Test timeout computed to be: 9.99988e+06 25: DELETING TEMP DIR /tmp/tmpKpqVXg 25: Executing test for gustaf 25: =============================== 25: 25: gustaf /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/tests/adeno.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/tests/adeno_modified_reads.fa -gff /tmp/tmpKpqVXg/st2_l100.gff -vcf /tmp/tmpKpqVXg/st2_l100.vcf OK 25: gustaf /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/tests/adeno.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/tests/adeno_modified_reads.fa -gff /tmp/tmpKpqVXg/st1_l30.gff -vcf /tmp/tmpKpqVXg/st1_l30.vcf -st 1 -l 30 OK 25: gustaf /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/tests/adeno.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/tests/adeno_modified_reads.fa -m /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/tests/stellar.gff -gff /tmp/tmpKpqVXg/st1_l30_m.gff -vcf /tmp/tmpKpqVXg/st1_l30_m.vcf -st 1 OK 25: gustaf /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/tests/adeno.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/tests/adeno_modified_reads.fa -gff /tmp/tmpKpqVXg/st1_l30_ith5.gff -vcf /tmp/tmpKpqVXg/st1_l30_ith5.vcf -st 1 -l 30 -ith 5 OK 25: gustaf /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/tests/adeno.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/tests/adeno_modified_reads.fa -gff /tmp/tmpKpqVXg/st1_l30_gth3.gff -vcf /tmp/tmpKpqVXg/st1_l30_gth3.vcf -st 1 -l 30 -gth 3 OK 25: ============================== 25: total tests: 5 25: failed tests: 0 25: successful tests: 5 25: ============================== 24/28 Test #25: app_test_gustaf .................. Passed 0.14 sec test 26 Start 26: app_test_bs_tools 26: Test command: /usr/bin/python2 "/builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/tests/run_tests.py" "/builddir/build/BUILD/seqan-1.4.2" "/builddir/build/BUILD/seqan-1.4.2/build/Release" 26: Test timeout computed to be: 9.99988e+06 26: Executing test for bs_tools 26: ========================= 26: 26: bisar -e3 4 -e4 5 -o /tmp/tmpmBDlT6/reads_se_N6000_0.CT_GA.verified.sam /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/tests/reads_se_N6000.CT_GA.sam /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/tests/hg18_chr21_3000.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/tests/reads_se_N6000.fastq OK 26: bisar -gas -4.5 -ges -2.0 -der 0.001 -bsc 0.99 -gmr 0.5 -i 0.8 -rn 0.001 -pms 0.9 -e3 4 -e4 5 -o /tmp/tmpmBDlT6/reads_se_N6000_1.CT_GA.verified.sam /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/tests/reads_se_N6000.CT_GA.sam /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/tests/hg18_chr21_3000.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/tests/reads_se_N6000.fastq OK 26: DELETING TEMP DIR /tmp/tmpmBDlT6 26: bisar -nse -nsi -nsd -gas -4.5 -ges -2.0 -der 0.001 -bsc 0.99 -gmr 0.5 -i 0.8 -rn 0.001 -pms 0.9 -e3 4 -e4 5 -o /tmp/tmpmBDlT6/reads_se_N6000_2.CT_GA.verified.sam /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/tests/reads_se_N6000.CT_GA.sam /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/tests/hg18_chr21_3000.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/tests/reads_se_N6000.fastq OK 26: bisar -nse -nsi -nsd -gas -4.5 -ges -2.0 -der 0.001 -bsc 0.99 -gmr 0.2 -i 0.8 -rn 0.001 -pms 0.9 -e3 4 -e4 5 -o /tmp/tmpmBDlT6/reads_se_N6000_3.CT_GA.verified.sam /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/tests/reads_se_N6000.CT_GA.sam /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/tests/hg18_chr21_3000.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/tests/reads_se_N6000.fastq OK 26: bisar -nse -nsi -nsd -gas -4.5 -ges -2.0 -der 0.001 -bsc 0.99 -gmr 0.8 -i 0.8 -rn 0.001 -pms 0.9 -e3 4 -e4 5 -o /tmp/tmpmBDlT6/reads_se_N6000_4.CT_GA.verified.sam /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/tests/reads_se_N6000.CT_GA.sam /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/tests/hg18_chr21_3000.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/tests/reads_se_N6000.fastq OK 26: bisar -e3 4 -e4 5 -o /tmp/tmpmBDlT6/reads_pe_N6000_0.CT_GA.verified.sam /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/tests/reads_pe_N6000.CT_GA.sam /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/tests/hg18_chr21_3000.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/tests/reads_pe_N6000.L.fastq /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/tests/reads_pe_N6000.R.fastq OK 26: casbar -nec -mc 6 -msc 5 -mpc 0.5 -hes 0.005 -o /tmp/tmpmBDlT6/snps_se_0.vcf -b /tmp/tmpmBDlT6/meths_se_0.bed /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/tests/hg18_chr21_3000.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/tests/reads_se_N6000_2.CT_GA.verified.pos_so.sam OK 26: casbar -nec -mc 2 -msc 3 -mpc 0.5 -hes 0.005 -o /tmp/tmpmBDlT6/snps_se_1.vcf -b /tmp/tmpmBDlT6/meths_se_1.bed /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/tests/hg18_chr21_3000.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/tests/reads_se_N6000_2.CT_GA.verified.pos_so.sam OK 26: casbar -nec -mc 6 -msc 5 -mpc 0.5 -hes 0.005 -o /tmp/tmpmBDlT6/snps_pe_0.vcf -b /tmp/tmpmBDlT6/meths_pe_0.bed /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/tests/hg18_chr21_3000.fa /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/tests/reads_pe_N6000_0.CT_GA.verified.pos_so.sam OK 26: ============================== 26: total tests: 9 26: failed tests: 0 26: successful tests: 9 26: ============================== 25/28 Test #26: app_test_bs_tools ................ Passed 15.19 sec test 27 Start 27: app_test_breakpoint_calculator 27: Test command: /usr/bin/python2 "/builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/tests/run_tests.py" "/builddir/build/BUILD/seqan-1.4.2" "/builddir/build/BUILD/seqan-1.4.2/build/Release" 27: Test timeout computed to be: 9.99988e+06 27: Executing test for breakpoint_calculator 27: ========================= 27: 27: breakpoint_calculator -d2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/tests/alignment.xmfa OK 27: breakpoint_calculator -d2 -d /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/tests/alignment.maf OK 27: breakpoint_calculator -d3 -f xmfa /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/tests/alignment.xmfa OK 27: breakpoint_calculator -d3 -d /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/tests/alignment.maf OK 27: ============================== 27: total tests: 4 27: failed tests: 0 27: successful tests: 4 27: ============================== 27: DELETING TEMP DIR /tmp/tmpf5xHr4 26/28 Test #27: app_test_breakpoint_calculator ... Passed 0.10 sec test 28 Start 28: test_py_lib_dox 28: Test command: /usr/bin/nosetests 28: Test timeout computed to be: 9.99988e+06 28: ........................................................................................................................................................................... 28: ---------------------------------------------------------------------- 28: Ran 171 tests in 0.258s 28: 28: OK 27/28 Test #28: test_py_lib_dox .................. Passed 1.11 sec 14: DELETING TEMP DIR /tmp/tmpMpCfb7 14: Executing test for dfi 14: ====================== 14: 14: dfi /tmp/tmpMpCfb7/datasets/bbe.fa /tmp/tmpMpCfb7/datasets/kjv.fa --support 0.002 --growth 5 -m OK 14: dfi /tmp/tmpMpCfb7/datasets/bbe.fa /tmp/tmpMpCfb7/datasets/kjv.fa --minmax 155 31102 --minmax 1 15551 -m OK 14: dfi /tmp/tmpMpCfb7/datasets/CompWindows.fa /tmp/tmpMpCfb7/datasets/CompNonWindows.fa --support 0.002 --growth 5 -m OK 14: dfi /tmp/tmpMpCfb7/datasets/CompWindows.fa /tmp/tmpMpCfb7/datasets/CompNonWindows.fa --minmax 10 2000 --minmax 1 1500 -m OK 14: dfi /tmp/tmpMpCfb7/datasets/CompWindows.fa /tmp/tmpMpCfb7/datasets/CompNonWindows.fa --support 0.0005 --growth 5 -m OK 14: dfi /tmp/tmpMpCfb7/datasets/CompWindows.fa /tmp/tmpMpCfb7/datasets/CompNonWindows.fa --support 0.001 --growth 5 -m OK 14: dfi /tmp/tmpMpCfb7/datasets/CompWindows.fa /tmp/tmpMpCfb7/datasets/CompNonWindows.fa --support 0.01 --growth 5 -m OK 14: dfi /tmp/tmpMpCfb7/datasets/CompWindows.fa /tmp/tmpMpCfb7/datasets/CompNonWindows.fa --support 0.1 --growth 5 -m OK 14: dfi /tmp/tmpMpCfb7/datasets/CompWindows.fa /tmp/tmpMpCfb7/datasets/CompNonWindows.fa --support 0.5 --growth 5 -m OK 14: dfi /tmp/tmpMpCfb7/datasets/CompWindows.fa /tmp/tmpMpCfb7/datasets/CompNonWindows.fa --support 0.9 --growth 5 -m OK 14: dfi /tmp/tmpMpCfb7/datasets/CompWindows.fa /tmp/tmpMpCfb7/datasets/CompNonWindows.fa --support 1 --growth 5 -m OK 14: dfi /tmp/tmpMpCfb7/datasets/CompWindows.fa /tmp/tmpMpCfb7/datasets/CompNonWindows.fa --support 0.002 --growth 1 -m OK 14: dfi /tmp/tmpMpCfb7/datasets/CompWindows.fa /tmp/tmpMpCfb7/datasets/CompNonWindows.fa --support 0.002 --growth 2 -m OK 14: dfi /tmp/tmpMpCfb7/datasets/CompWindows.fa /tmp/tmpMpCfb7/datasets/CompNonWindows.fa --support 0.002 --growth 5 -m OK 14: dfi /tmp/tmpMpCfb7/datasets/fasta1.fa /tmp/tmpMpCfb7/datasets/fasta2.fa --support 1 --growth 2 OK 14: ============================== 14: total tests: 15 14: failed tests: 0 14: successful tests: 15 14: ============================== 28/28 Test #14: app_test_dfi ..................... Passed 71.49 sec 100% tests passed, 0 tests failed out of 28 Total Test time (real) = 113.30 sec + exit 0 Processing files: seqan-1.4.2-24.el7.centos.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.Qs1UE3 + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + DOCDIR=/builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan-1.4.2 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan-1.4.2 + cp -pr README.rst /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan-1.4.2 + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.z4b0ql + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + LICENSEDIR=/builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/licenses/seqan-1.4.2 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/licenses/seqan-1.4.2 + cp -pr BSD.txt /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/licenses/seqan-1.4.2 + cp -pr GPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/licenses/seqan-1.4.2 + cp -pr LGPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/licenses/seqan-1.4.2 + exit 0 Provides: bundled(gnulib) seqan = 1.4.2-24.el7.centos seqan(x86-64) = 1.4.2-24.el7.centos Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /bin/bash ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.2)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgomp.so.1(OMP_2.0)(64bit) libgomp.so.1(OMP_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libpthread.so.0(GLIBC_2.3.2)(64bit) librt.so.1()(64bit) librt.so.1(GLIBC_2.2.5)(64bit) libz.so.1()(64bit) libz.so.1(ZLIB_1.2.2.3)(64bit) libz.so.1(ZLIB_1.2.3.3)(64bit) rtld(GNU_HASH) Processing files: seqan-devel-1.4.2-24.el7.centos.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.GwFRuG + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + DOCDIR=/builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan-devel-1.4.2 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan-devel-1.4.2 + cp -pr README.rst /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan-devel-1.4.2 + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.9dRVz1 + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + LICENSEDIR=/builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/licenses/seqan-devel-1.4.2 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/licenses/seqan-devel-1.4.2 + cp -pr BSD.txt /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/licenses/seqan-devel-1.4.2 + cp -pr GPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/licenses/seqan-devel-1.4.2 + cp -pr LGPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/licenses/seqan-devel-1.4.2 + exit 0 Provides: seqan-devel = 1.4.2-24.el7.centos seqan-devel(x86-64) = 1.4.2-24.el7.centos Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: seqan-doc-1.4.2-24.el7.centos.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.6i7G6y + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + DOCDIR=/builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan-doc-1.4.2 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan-doc-1.4.2 + cp -pr seqandoc /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/doc/seqan-doc-1.4.2 + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.re9dG6 + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + LICENSEDIR=/builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/licenses/seqan-doc-1.4.2 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/licenses/seqan-doc-1.4.2 + cp -pr BSD.txt /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/licenses/seqan-doc-1.4.2 + cp -pr GPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/licenses/seqan-doc-1.4.2 + cp -pr LGPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64/usr/share/licenses/seqan-doc-1.4.2 + exit 0 Provides: seqan-doc = 1.4.2-24.el7.centos Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: seqan-debuginfo-1.4.2-24.el7.centos.x86_64 Provides: seqan-debuginfo = 1.4.2-24.el7.centos seqan-debuginfo(x86-64) = 1.4.2-24.el7.centos Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64 Wrote: /builddir/build/RPMS/seqan-1.4.2-24.el7.centos.x86_64.rpm Wrote: /builddir/build/RPMS/seqan-devel-1.4.2-24.el7.centos.x86_64.rpm Wrote: /builddir/build/RPMS/seqan-doc-1.4.2-24.el7.centos.noarch.rpm Wrote: /builddir/build/RPMS/seqan-debuginfo-1.4.2-24.el7.centos.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.8dTgwz + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + /usr/bin/rm -rf /builddir/build/BUILDROOT/seqan-1.4.2-24.el7.centos.x86_64 + exit 0 Child return code was: 0