Warning: Permanently added '169.63.178.219' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6745622-fedora-rawhide-s390x --chroot fedora-rawhide-s390x


Version: 0.70
PID: 6316
Logging PID: 6317
Task:
{'appstream': False,
 'background': True,
 'build_id': 6745622,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-s390x',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '2ed9d1e86a2a9ad4b2b3dea57cbe20a8b80d3205',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/ppalka/boost-1.83-all-arches/mmseq',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'mmseq',
 'package_version': '1.0.11-16',
 'project_dirname': 'boost-1.83-all-arches',
 'project_name': 'boost-1.83-all-arches',
 'project_owner': 'ppalka',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/ppalka/boost-1.83-all-arches/fedora-rawhide-s390x/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None}],
 'sandbox': 'ppalka/boost-1.83-all-arches--ppalka',
 'source_json': {},
 'source_type': None,
 'submitter': 'ppalka',
 'tags': [],
 'task_id': '6745622-fedora-rawhide-s390x',
 'timeout': 115200,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/ppalka/boost-1.83-all-arches/mmseq /var/lib/copr-rpmbuild/workspace/workdir-cux355ml/mmseq --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/ppalka/boost-1.83-all-arches/mmseq', '/var/lib/copr-rpmbuild/workspace/workdir-cux355ml/mmseq', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-cux355ml/mmseq'...

Running: git checkout 2ed9d1e86a2a9ad4b2b3dea57cbe20a8b80d3205 --

cmd: ['git', 'checkout', '2ed9d1e86a2a9ad4b2b3dea57cbe20a8b80d3205', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-cux355ml/mmseq
rc: 0
stdout: 
stderr: Note: switching to '2ed9d1e86a2a9ad4b2b3dea57cbe20a8b80d3205'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 2ed9d1e automatic import of mmseq

Running: copr-distgit-client sources

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-cux355ml/mmseq
rc: 0
stdout: 
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading 1.0.11.zip
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o 1.0.11.zip --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/ppalka/boost-1.83-all-arches/mmseq/1.0.11.zip/md5/c727916d339d7a2111523800b621ce2b/1.0.11.zip
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 2781k  100 2781k    0     0   545k      0  0:00:05  0:00:05 --:--:--  724k
INFO: Reading stdout from command: md5sum 1.0.11.zip

Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-cux355ml/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-cux355ml/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1702482417.624082 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.2 starting (python version = 3.11.3, NVR = mock-5.2-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-cux355ml/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-cux355ml/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1702482417.624082 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-cux355ml/mmseq/mmseq.spec)  Config(fedora-rawhide-s390x)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.2
INFO: Mock Version: 5.2
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1702482417.624082/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-s390x-bootstrap-1702482417.624082/root
INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/1dcc8587651e7b062fe2a5b463ae8981bff61ec4f02b37098f8dca28c3fac419/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/1dcc8587651e7b062fe2a5b463ae8981bff61ec4f02b37098f8dca28c3fac419/merged) with podman image umount
INFO: Package manager dnf detected and used (fallback)
INFO: Bootstrap image not marked ready
Start(bootstrap): installing dnf tooling
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                 472 kB/s | 2.5 MB     00:05    
fedora                                          5.1 MB/s |  63 MB     00:12    
Last metadata expiration check: 0:00:01 ago on Wed Dec 13 15:47:23 2023.
Package python3-dnf-4.18.2-1.fc40.noarch is already installed.
Dependencies resolved.
================================================================================
 Package                      Arch       Version               Repository  Size
================================================================================
Installing:
 python3-dnf-plugins-core     noarch     4.4.4-1.fc40          fedora     317 k
Installing dependencies:
 dbus-libs                    s390x      1:1.14.10-1.fc40      fedora     159 k
 python3-dateutil             noarch     1:2.8.2-11.fc40       fedora     356 k
 python3-dbus                 s390x      1.3.2-4.fc39          fedora     157 k
 python3-distro               noarch     1.8.0-6.fc39          fedora      49 k
 python3-six                  noarch     1.16.0-12.fc39        fedora      41 k
 python3-systemd              s390x      235-5.fc39            fedora     106 k

Transaction Summary
================================================================================
Install  7 Packages

Total download size: 1.2 M
Installed size: 3.6 M
Downloading Packages:
(1/7): python3-dbus-1.3.2-4.fc39.s390x.rpm      423 kB/s | 157 kB     00:00    
(2/7): dbus-libs-1.14.10-1.fc40.s390x.rpm       399 kB/s | 159 kB     00:00    
(3/7): python3-distro-1.8.0-6.fc39.noarch.rpm   596 kB/s |  49 kB     00:00    
(4/7): python3-dateutil-2.8.2-11.fc40.noarch.rp 767 kB/s | 356 kB     00:00    
(5/7): python3-systemd-235-5.fc39.s390x.rpm     1.3 MB/s | 106 kB     00:00    
(6/7): python3-six-1.16.0-12.fc39.noarch.rpm    404 kB/s |  41 kB     00:00    
(7/7): python3-dnf-plugins-core-4.4.4-1.fc40.no 1.5 MB/s | 317 kB     00:00    
--------------------------------------------------------------------------------
Total                                           1.7 MB/s | 1.2 MB     00:00     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : python3-systemd-235-5.fc39.s390x                       1/7 
  Installing       : python3-six-1.16.0-12.fc39.noarch                      2/7 
  Installing       : python3-dateutil-1:2.8.2-11.fc40.noarch                3/7 
  Installing       : python3-distro-1.8.0-6.fc39.noarch                     4/7 
  Installing       : dbus-libs-1:1.14.10-1.fc40.s390x                       5/7 
  Installing       : python3-dbus-1.3.2-4.fc39.s390x                        6/7 
  Installing       : python3-dnf-plugins-core-4.4.4-1.fc40.noarch           7/7 
  Running scriptlet: python3-dnf-plugins-core-4.4.4-1.fc40.noarch           7/7 

Installed:
  dbus-libs-1:1.14.10-1.fc40.s390x                                              
  python3-dateutil-1:2.8.2-11.fc40.noarch                                       
  python3-dbus-1.3.2-4.fc39.s390x                                               
  python3-distro-1.8.0-6.fc39.noarch                                            
  python3-dnf-plugins-core-4.4.4-1.fc40.noarch                                  
  python3-six-1.16.0-12.fc39.noarch                                             
  python3-systemd-235-5.fc39.s390x                                              

Complete!
Finish(bootstrap): installing dnf tooling
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1702482417.624082/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf detected and used (direct choice)
Start: installing minimal buildroot with dnf
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                 243 kB/s | 2.5 MB     00:10    
fedora                                           10 MB/s |  63 MB     00:06    
Last metadata expiration check: 0:00:01 ago on Wed Dec 13 15:48:14 2023.
Dependencies resolved.
================================================================================
 Package                       Arch   Version                      Repo    Size
================================================================================
Installing group/module packages:
 bash                          s390x  5.2.21-2.fc40                fedora 1.8 M
 bzip2                         s390x  1.0.8-16.fc39                fedora  53 k
 coreutils                     s390x  9.4-1.fc40                   fedora 1.2 M
 cpio                          s390x  2.14-5.fc40                  fedora 283 k
 diffutils                     s390x  3.10-3.fc39                  fedora 407 k
 fedora-release-common         noarch 40-0.20                      fedora  20 k
 findutils                     s390x  1:4.9.0-6.fc40               fedora 497 k
 gawk                          s390x  5.2.2-2.fc39                 fedora 1.1 M
 glibc-minimal-langpack        s390x  2.38.9000-27.fc40            fedora  86 k
 grep                          s390x  3.11-5.fc40                  fedora 305 k
 gzip                          s390x  1.12-6.fc39                  fedora 173 k
 info                          s390x  7.1-1.fc40                   fedora 195 k
 patch                         s390x  2.7.6-22.fc39                fedora 134 k
 redhat-rpm-config             noarch 271-1.fc40                   fedora  81 k
 rpm-build                     s390x  4.19.1-1.fc40                fedora  79 k
 sed                           s390x  4.8-14.fc39                  fedora 309 k
 shadow-utils                  s390x  2:4.14.0-2.fc40              fedora 1.3 M
 tar                           s390x  2:1.35-2.fc40                fedora 874 k
 unzip                         s390x  6.0-62.fc39                  fedora 194 k
 util-linux                    s390x  2.39.2-1.fc40                fedora 1.1 M
 which                         s390x  2.21-40.fc39                 fedora  43 k
 xz                            s390x  5.4.5-1.fc40                 fedora 558 k
Installing dependencies:
 alternatives                  s390x  1.25-1.fc39                  fedora  39 k
 ansible-srpm-macros           noarch 1-11.fc39                    fedora  21 k
 audit-libs                    s390x  3.1.2-5.fc40                 fedora 121 k
 authselect                    s390x  1.4.3-1.fc40                 fedora 149 k
 authselect-libs               s390x  1.4.3-1.fc40                 fedora 248 k
 basesystem                    noarch 11-18.fc39                   fedora 7.2 k
 binutils                      s390x  2.41-16.fc40                 fedora 5.9 M
 binutils-gold                 s390x  2.41-16.fc40                 fedora 991 k
 bzip2-libs                    s390x  1.0.8-16.fc39                fedora  46 k
 ca-certificates               noarch 2023.2.62_v7.0.401-4.fc40    fedora 863 k
 coreutils-common              s390x  9.4-1.fc40                   fedora 2.1 M
 cracklib                      s390x  2.9.11-2.fc39                fedora  94 k
 crypto-policies               noarch 20231204-1.git1e3a2e4.fc40   fedora 100 k
 curl                          s390x  8.5.0-1.fc40                 fedora 372 k
 cyrus-sasl-lib                s390x  2.1.28-11.fc39               fedora 819 k
 debugedit                     s390x  5.0-12.fc40                  fedora  81 k
 dwz                           s390x  0.15-3.fc39                  fedora 144 k
 ed                            s390x  1.19-4.fc39                  fedora  80 k
 efi-srpm-macros               noarch 5-9.fc39                     fedora  22 k
 elfutils                      s390x  0.190-4.fc40                 fedora 576 k
 elfutils-debuginfod-client    s390x  0.190-4.fc40                 fedora  38 k
 elfutils-default-yama-scope   noarch 0.190-4.fc40                 fedora  13 k
 elfutils-libelf               s390x  0.190-4.fc40                 fedora 200 k
 elfutils-libs                 s390x  0.190-4.fc40                 fedora 276 k
 fedora-gpg-keys               noarch 40-0.2                       fedora 130 k
 fedora-release                noarch 40-0.20                      fedora 9.3 k
 fedora-release-identity-basic noarch 40-0.20                      fedora  10 k
 fedora-repos                  noarch 40-0.2                       fedora 9.3 k
 fedora-repos-rawhide          noarch 40-0.2                       fedora 8.9 k
 file                          s390x  5.45-1.fc40                  fedora  49 k
 file-libs                     s390x  5.45-1.fc40                  fedora 769 k
 filesystem                    s390x  3.18-6.fc39                  fedora 1.1 M
 fonts-srpm-macros             noarch 1:2.0.5-12.fc39              fedora  26 k
 forge-srpm-macros             noarch 0.2.0-1.fc40                 fedora  18 k
 fpc-srpm-macros               noarch 1.3-8.fc39                   fedora 7.4 k
 gdb-minimal                   s390x  14.1-1.fc40                  fedora 4.1 M
 gdbm                          s390x  1:1.23-4.fc39                fedora 156 k
 gdbm-libs                     s390x  1:1.23-4.fc39                fedora  58 k
 ghc-srpm-macros               noarch 1.6.1-3.fc40                 fedora 8.1 k
 glibc                         s390x  2.38.9000-27.fc40            fedora 1.9 M
 glibc-common                  s390x  2.38.9000-27.fc40            fedora 386 k
 glibc-gconv-extra             s390x  2.38.9000-27.fc40            fedora 1.7 M
 gmp                           s390x  1:6.2.1-5.fc39               fedora 325 k
 gnat-srpm-macros              noarch 6-3.fc39                     fedora 8.8 k
 go-srpm-macros                noarch 3.3.1-1.fc40                 fedora  28 k
 jansson                       s390x  2.13.1-7.fc39                fedora  44 k
 kernel-srpm-macros            noarch 1.0-20.fc39                  fedora  10 k
 keyutils-libs                 s390x  1.6.1-7.fc39                 fedora  31 k
 krb5-libs                     s390x  1.21.2-2.fc40                fedora 780 k
 libacl                        s390x  2.3.1-11.fc40                fedora  25 k
 libarchive                    s390x  3.7.2-1.fc40                 fedora 440 k
 libattr                       s390x  2.5.1-9.fc40                 fedora  18 k
 libblkid                      s390x  2.39.2-1.fc40                fedora 120 k
 libbrotli                     s390x  1.1.0-1.fc40                 fedora 379 k
 libcap                        s390x  2.69-1.fc40                  fedora  85 k
 libcap-ng                     s390x  0.8.3-8.fc40                 fedora  32 k
 libcom_err                    s390x  1.47.0-2.fc39                fedora  26 k
 libcurl                       s390x  8.5.0-1.fc40                 fedora 362 k
 libeconf                      s390x  0.5.2-1.fc40                 fedora  32 k
 libevent                      s390x  2.1.12-9.fc39                fedora 260 k
 libfdisk                      s390x  2.39.2-1.fc40                fedora 165 k
 libffi                        s390x  3.4.4-4.fc39                 fedora  36 k
 libgcc                        s390x  13.2.1-6.fc40                fedora  85 k
 libgomp                       s390x  13.2.1-6.fc40                fedora 325 k
 libidn2                       s390x  2.3.4-3.fc39                 fedora 118 k
 libmount                      s390x  2.39.2-1.fc40                fedora 158 k
 libnghttp2                    s390x  1.58.0-1.fc40                fedora  78 k
 libnsl2                       s390x  2.0.0-6.fc39                 fedora  30 k
 libpkgconf                    s390x  1.9.5-2.fc39                 fedora  38 k
 libpsl                        s390x  0.21.2-4.fc39                fedora  63 k
 libpwquality                  s390x  1.4.5-6.fc39                 fedora 121 k
 libselinux                    s390x  3.6-0.rc2.1.fc40             fedora  92 k
 libsemanage                   s390x  3.6-0.rc2.1.fc40             fedora 119 k
 libsepol                      s390x  3.6-0.rc2.1.fc40             fedora 346 k
 libsigsegv                    s390x  2.14-5.fc39                  fedora  27 k
 libsmartcols                  s390x  2.39.2-1.fc40                fedora  70 k
 libssh                        s390x  0.10.5-2.fc39                fedora 209 k
 libssh-config                 noarch 0.10.5-2.fc39                fedora 9.2 k
 libstdc++                     s390x  13.2.1-6.fc40                fedora 953 k
 libtasn1                      s390x  4.19.0-3.fc39                fedora  77 k
 libtirpc                      s390x  1.3.4-0.fc40                 fedora  96 k
 libunistring                  s390x  1.1-5.fc40                   fedora 556 k
 libutempter                   s390x  1.2.1-10.fc39                fedora  26 k
 libuuid                       s390x  2.39.2-1.fc40                fedora  28 k
 libverto                      s390x  0.3.2-6.fc39                 fedora  21 k
 libxcrypt                     s390x  4.4.36-2.fc39                fedora 124 k
 libxml2                       s390x  2.12.3-1.fc40                fedora 705 k
 libzstd                       s390x  1.5.5-4.fc39                 fedora 342 k
 lua-libs                      s390x  5.4.6-3.fc39                 fedora 142 k
 lua-srpm-macros               noarch 1-9.fc39                     fedora 8.6 k
 lz4-libs                      s390x  1.9.4-4.fc39                 fedora  81 k
 mpfr                          s390x  4.2.1-1.fc40                 fedora 297 k
 ncurses-base                  noarch 6.4-8.20231001.fc40          fedora  88 k
 ncurses-libs                  s390x  6.4-8.20231001.fc40          fedora 362 k
 ocaml-srpm-macros             noarch 9-1.fc40                     fedora 9.0 k
 openblas-srpm-macros          noarch 2-14.fc39                    fedora 7.5 k
 openldap                      s390x  2.6.6-1.fc39                 fedora 262 k
 openssl-libs                  s390x  1:3.1.4-1.fc40               fedora 1.9 M
 p11-kit                       s390x  0.25.3-1.fc40                fedora 533 k
 p11-kit-trust                 s390x  0.25.3-1.fc40                fedora 142 k
 package-notes-srpm-macros     noarch 0.5-9.fc39                   fedora  11 k
 pam                           s390x  1.5.3-8.fc40                 fedora 557 k
 pam-libs                      s390x  1.5.3-8.fc40                 fedora  59 k
 pcre2                         s390x  10.42-2.fc40                 fedora 250 k
 pcre2-syntax                  noarch 10.42-2.fc40                 fedora 143 k
 perl-srpm-macros              noarch 1-51.fc39                    fedora 8.0 k
 pkgconf                       s390x  1.9.5-2.fc39                 fedora  43 k
 pkgconf-m4                    noarch 1.9.5-2.fc39                 fedora  14 k
 pkgconf-pkg-config            s390x  1.9.5-2.fc39                 fedora 9.6 k
 popt                          s390x  1.19-3.fc39                  fedora  69 k
 publicsuffix-list-dafsa       noarch 20230812-1.fc40              fedora  57 k
 pyproject-srpm-macros         noarch 1.10.0-1.fc40                fedora  14 k
 python-srpm-macros            noarch 3.12-5.fc40                  fedora  25 k
 qt5-srpm-macros               noarch 5.15.11-1.fc40               fedora 8.3 k
 qt6-srpm-macros               noarch 6.6.1-1.fc40                 fedora 8.6 k
 readline                      s390x  8.2-4.fc39                   fedora 229 k
 rpm                           s390x  4.19.1-1.fc40                fedora 537 k
 rpm-build-libs                s390x  4.19.1-1.fc40                fedora  97 k
 rpm-libs                      s390x  4.19.1-1.fc40                fedora 324 k
 rpm-sequoia                   s390x  1.5.0-2.fc40                 fedora 1.0 M
 rust-srpm-macros              noarch 25.2-2.fc40                  fedora  13 k
 setup                         noarch 2.14.5-1.fc40                fedora 155 k
 sqlite-libs                   s390x  3.44.2-1.fc40                fedora 742 k
 systemd-libs                  s390x  255-1.fc40                   fedora 711 k
 util-linux-core               s390x  2.39.2-1.fc40                fedora 496 k
 xxhash-libs                   s390x  0.8.2-1.fc39                 fedora  37 k
 xz-libs                       s390x  5.4.5-1.fc40                 fedora 114 k
 zip                           s390x  3.0-39.fc40                  fedora 283 k
 zlib                          s390x  1.2.13-5.fc40                fedora 101 k
 zstd                          s390x  1.5.5-4.fc39                 fedora 506 k
Installing Groups:
 Buildsystem building group                                                    

Transaction Summary
================================================================================
Install  152 Packages

Total download size: 52 M
Installed size: 178 M
Downloading Packages:
(1/152): ansible-srpm-macros-1-11.fc39.noarch.r 440 kB/s |  21 kB     00:00    
(2/152): alternatives-1.25-1.fc39.s390x.rpm     736 kB/s |  39 kB     00:00    
(3/152): audit-libs-3.1.2-5.fc40.s390x.rpm      1.5 MB/s | 121 kB     00:00    
(4/152): basesystem-11-18.fc39.noarch.rpm       467 kB/s | 7.2 kB     00:00    
(5/152): authselect-1.4.3-1.fc40.s390x.rpm      2.7 MB/s | 149 kB     00:00    
(6/152): authselect-libs-1.4.3-1.fc40.s390x.rpm 3.9 MB/s | 248 kB     00:00    
(7/152): binutils-gold-2.41-16.fc40.s390x.rpm    19 MB/s | 991 kB     00:00    
(8/152): bash-5.2.21-2.fc40.s390x.rpm            22 MB/s | 1.8 MB     00:00    
(9/152): bzip2-1.0.8-16.fc39.s390x.rpm          3.4 MB/s |  53 kB     00:00    
(10/152): bzip2-libs-1.0.8-16.fc39.s390x.rpm    3.0 MB/s |  46 kB     00:00    
(11/152): binutils-2.41-16.fc40.s390x.rpm        57 MB/s | 5.9 MB     00:00    
(12/152): ca-certificates-2023.2.62_v7.0.401-4.  33 MB/s | 863 kB     00:00    
(13/152): coreutils-9.4-1.fc40.s390x.rpm         53 MB/s | 1.2 MB     00:00    
(14/152): cpio-2.14-5.fc40.s390x.rpm             18 MB/s | 283 kB     00:00    
(15/152): cracklib-2.9.11-2.fc39.s390x.rpm      6.0 MB/s |  94 kB     00:00    
(16/152): crypto-policies-20231204-1.git1e3a2e4 6.4 MB/s | 100 kB     00:00    
(17/152): coreutils-common-9.4-1.fc40.s390x.rpm  57 MB/s | 2.1 MB     00:00    
(18/152): curl-8.5.0-1.fc40.s390x.rpm            21 MB/s | 372 kB     00:00    
(19/152): cyrus-sasl-lib-2.1.28-11.fc39.s390x.r  47 MB/s | 819 kB     00:00    
(20/152): debugedit-5.0-12.fc40.s390x.rpm       5.2 MB/s |  81 kB     00:00    
(21/152): diffutils-3.10-3.fc39.s390x.rpm        23 MB/s | 407 kB     00:00    
(22/152): dwz-0.15-3.fc39.s390x.rpm             9.1 MB/s | 144 kB     00:00    
(23/152): ed-1.19-4.fc39.s390x.rpm              5.1 MB/s |  80 kB     00:00    
(24/152): efi-srpm-macros-5-9.fc39.noarch.rpm   1.4 MB/s |  22 kB     00:00    
(25/152): elfutils-0.190-4.fc40.s390x.rpm        35 MB/s | 576 kB     00:00    
(26/152): elfutils-debuginfod-client-0.190-4.fc 2.5 MB/s |  38 kB     00:00    
(27/152): elfutils-default-yama-scope-0.190-4.f 851 kB/s |  13 kB     00:00    
(28/152): elfutils-libelf-0.190-4.fc40.s390x.rp  13 MB/s | 200 kB     00:00    
(29/152): elfutils-libs-0.190-4.fc40.s390x.rpm   17 MB/s | 276 kB     00:00    
(30/152): fedora-gpg-keys-40-0.2.noarch.rpm     8.1 MB/s | 130 kB     00:00    
(31/152): fedora-release-40-0.20.noarch.rpm     620 kB/s | 9.3 kB     00:00    
(32/152): fedora-release-common-40-0.20.noarch. 1.3 MB/s |  20 kB     00:00    
(33/152): fedora-release-identity-basic-40-0.20 667 kB/s |  10 kB     00:00    
(34/152): fedora-repos-40-0.2.noarch.rpm        624 kB/s | 9.3 kB     00:00    
(35/152): fedora-repos-rawhide-40-0.2.noarch.rp 592 kB/s | 8.9 kB     00:00    
(36/152): file-5.45-1.fc40.s390x.rpm            3.2 MB/s |  49 kB     00:00    
(37/152): file-libs-5.45-1.fc40.s390x.rpm        45 MB/s | 769 kB     00:00    
(38/152): filesystem-3.18-6.fc39.s390x.rpm       55 MB/s | 1.1 MB     00:00    
(39/152): findutils-4.9.0-6.fc40.s390x.rpm       27 MB/s | 497 kB     00:00    
(40/152): fonts-srpm-macros-2.0.5-12.fc39.noarc 1.7 MB/s |  26 kB     00:00    
(41/152): forge-srpm-macros-0.2.0-1.fc40.noarch 1.2 MB/s |  18 kB     00:00    
(42/152): fpc-srpm-macros-1.3-8.fc39.noarch.rpm 489 kB/s | 7.4 kB     00:00    
(43/152): gawk-5.2.2-2.fc39.s390x.rpm            62 MB/s | 1.1 MB     00:00    
(44/152): gdbm-1.23-4.fc39.s390x.rpm            9.7 MB/s | 156 kB     00:00    
(45/152): gdbm-libs-1.23-4.fc39.s390x.rpm       3.7 MB/s |  58 kB     00:00    
(46/152): gdb-minimal-14.1-1.fc40.s390x.rpm     110 MB/s | 4.1 MB     00:00    
(47/152): ghc-srpm-macros-1.6.1-3.fc40.noarch.r 493 kB/s | 8.1 kB     00:00    
(48/152): glibc-2.38.9000-27.fc40.s390x.rpm      95 MB/s | 1.9 MB     00:00    
(49/152): glibc-common-2.38.9000-27.fc40.s390x.  24 MB/s | 386 kB     00:00    
(50/152): glibc-minimal-langpack-2.38.9000-27.f 5.6 MB/s |  86 kB     00:00    
(51/152): glibc-gconv-extra-2.38.9000-27.fc40.s  65 MB/s | 1.7 MB     00:00    
(52/152): gmp-6.2.1-5.fc39.s390x.rpm             20 MB/s | 325 kB     00:00    
(53/152): gnat-srpm-macros-6-3.fc39.noarch.rpm  589 kB/s | 8.8 kB     00:00    
(54/152): go-srpm-macros-3.3.1-1.fc40.noarch.rp 1.8 MB/s |  28 kB     00:00    
(55/152): grep-3.11-5.fc40.s390x.rpm             19 MB/s | 305 kB     00:00    
(56/152): gzip-1.12-6.fc39.s390x.rpm             11 MB/s | 173 kB     00:00    
(57/152): info-7.1-1.fc40.s390x.rpm              12 MB/s | 195 kB     00:00    
(58/152): jansson-2.13.1-7.fc39.s390x.rpm       2.8 MB/s |  44 kB     00:00    
(59/152): kernel-srpm-macros-1.0-20.fc39.noarch 700 kB/s |  10 kB     00:00    
(60/152): keyutils-libs-1.6.1-7.fc39.s390x.rpm  2.0 MB/s |  31 kB     00:00    
(61/152): krb5-libs-1.21.2-2.fc40.s390x.rpm      45 MB/s | 780 kB     00:00    
(62/152): libacl-2.3.1-11.fc40.s390x.rpm        1.6 MB/s |  25 kB     00:00    
(63/152): libarchive-3.7.2-1.fc40.s390x.rpm      25 MB/s | 440 kB     00:00    
(64/152): libattr-2.5.1-9.fc40.s390x.rpm        1.2 MB/s |  18 kB     00:00    
(65/152): libblkid-2.39.2-1.fc40.s390x.rpm      7.7 MB/s | 120 kB     00:00    
(66/152): libbrotli-1.1.0-1.fc40.s390x.rpm       22 MB/s | 379 kB     00:00    
(67/152): libcap-2.69-1.fc40.s390x.rpm          5.4 MB/s |  85 kB     00:00    
(68/152): libcap-ng-0.8.3-8.fc40.s390x.rpm      2.1 MB/s |  32 kB     00:00    
(69/152): libcom_err-1.47.0-2.fc39.s390x.rpm    1.7 MB/s |  26 kB     00:00    
(70/152): libcurl-8.5.0-1.fc40.s390x.rpm         22 MB/s | 362 kB     00:00    
(71/152): libeconf-0.5.2-1.fc40.s390x.rpm       2.1 MB/s |  32 kB     00:00    
(72/152): libevent-2.1.12-9.fc39.s390x.rpm       16 MB/s | 260 kB     00:00    
(73/152): libfdisk-2.39.2-1.fc40.s390x.rpm       11 MB/s | 165 kB     00:00    
(74/152): libffi-3.4.4-4.fc39.s390x.rpm         2.3 MB/s |  36 kB     00:00    
(75/152): libgcc-13.2.1-6.fc40.s390x.rpm        5.4 MB/s |  85 kB     00:00    
(76/152): libgomp-13.2.1-6.fc40.s390x.rpm        20 MB/s | 325 kB     00:00    
(77/152): libidn2-2.3.4-3.fc39.s390x.rpm        7.5 MB/s | 118 kB     00:00    
(78/152): libmount-2.39.2-1.fc40.s390x.rpm      9.8 MB/s | 158 kB     00:00    
(79/152): libnghttp2-1.58.0-1.fc40.s390x.rpm    5.0 MB/s |  78 kB     00:00    
(80/152): libnsl2-2.0.0-6.fc39.s390x.rpm        1.9 MB/s |  30 kB     00:00    
(81/152): libpkgconf-1.9.5-2.fc39.s390x.rpm     2.5 MB/s |  38 kB     00:00    
(82/152): libpsl-0.21.2-4.fc39.s390x.rpm        4.1 MB/s |  63 kB     00:00    
(83/152): libpwquality-1.4.5-6.fc39.s390x.rpm   7.7 MB/s | 121 kB     00:00    
(84/152): libselinux-3.6-0.rc2.1.fc40.s390x.rpm 5.9 MB/s |  92 kB     00:00    
(85/152): libsemanage-3.6-0.rc2.1.fc40.s390x.rp 7.5 MB/s | 119 kB     00:00    
(86/152): libsepol-3.6-0.rc2.1.fc40.s390x.rpm    21 MB/s | 346 kB     00:00    
(87/152): libsigsegv-2.14-5.fc39.s390x.rpm      1.7 MB/s |  27 kB     00:00    
(88/152): libsmartcols-2.39.2-1.fc40.s390x.rpm  4.5 MB/s |  70 kB     00:00    
(89/152): libssh-0.10.5-2.fc39.s390x.rpm         13 MB/s | 209 kB     00:00    
(90/152): libssh-config-0.10.5-2.fc39.noarch.rp 609 kB/s | 9.2 kB     00:00    
(91/152): libstdc++-13.2.1-6.fc40.s390x.rpm      54 MB/s | 953 kB     00:00    
(92/152): libtasn1-4.19.0-3.fc39.s390x.rpm      4.9 MB/s |  77 kB     00:00    
(93/152): libtirpc-1.3.4-0.fc40.s390x.rpm       6.1 MB/s |  96 kB     00:00    
(94/152): libunistring-1.1-5.fc40.s390x.rpm      33 MB/s | 556 kB     00:00    
(95/152): libutempter-1.2.1-10.fc39.s390x.rpm   1.7 MB/s |  26 kB     00:00    
(96/152): libuuid-2.39.2-1.fc40.s390x.rpm       1.8 MB/s |  28 kB     00:00    
(97/152): libverto-0.3.2-6.fc39.s390x.rpm       1.3 MB/s |  21 kB     00:00    
(98/152): libxcrypt-4.4.36-2.fc39.s390x.rpm     7.9 MB/s | 124 kB     00:00    
(99/152): libxml2-2.12.3-1.fc40.s390x.rpm        37 MB/s | 705 kB     00:00    
(100/152): libzstd-1.5.5-4.fc39.s390x.rpm        21 MB/s | 342 kB     00:00    
(101/152): lua-libs-5.4.6-3.fc39.s390x.rpm      9.0 MB/s | 142 kB     00:00    
(102/152): lua-srpm-macros-1-9.fc39.noarch.rpm  572 kB/s | 8.6 kB     00:00    
(103/152): lz4-libs-1.9.4-4.fc39.s390x.rpm      5.2 MB/s |  81 kB     00:00    
(104/152): mpfr-4.2.1-1.fc40.s390x.rpm           19 MB/s | 297 kB     00:00    
(105/152): ncurses-base-6.4-8.20231001.fc40.noa 5.6 MB/s |  88 kB     00:00    
(106/152): ncurses-libs-6.4-8.20231001.fc40.s39  22 MB/s | 362 kB     00:00    
(107/152): ocaml-srpm-macros-9-1.fc40.noarch.rp 599 kB/s | 9.0 kB     00:00    
(108/152): openblas-srpm-macros-2-14.fc39.noarc 502 kB/s | 7.5 kB     00:00    
(109/152): openldap-2.6.6-1.fc39.s390x.rpm       16 MB/s | 262 kB     00:00    
(110/152): openssl-libs-3.1.4-1.fc40.s390x.rpm   95 MB/s | 1.9 MB     00:00    
(111/152): p11-kit-0.25.3-1.fc40.s390x.rpm       29 MB/s | 533 kB     00:00    
(112/152): p11-kit-trust-0.25.3-1.fc40.s390x.rp 9.0 MB/s | 142 kB     00:00    
(113/152): package-notes-srpm-macros-0.5-9.fc39 745 kB/s |  11 kB     00:00    
(114/152): pam-1.5.3-8.fc40.s390x.rpm            30 MB/s | 557 kB     00:00    
(115/152): pam-libs-1.5.3-8.fc40.s390x.rpm      3.8 MB/s |  59 kB     00:00    
(116/152): patch-2.7.6-22.fc39.s390x.rpm        8.5 MB/s | 134 kB     00:00    
(117/152): pcre2-10.42-2.fc40.s390x.rpm          16 MB/s | 250 kB     00:00    
(118/152): pcre2-syntax-10.42-2.fc40.noarch.rpm 8.8 MB/s | 143 kB     00:00    
(119/152): perl-srpm-macros-1-51.fc39.noarch.rp 533 kB/s | 8.0 kB     00:00    
(120/152): pkgconf-1.9.5-2.fc39.s390x.rpm       2.7 MB/s |  43 kB     00:00    
(121/152): pkgconf-m4-1.9.5-2.fc39.noarch.rpm   918 kB/s |  14 kB     00:00    
(122/152): pkgconf-pkg-config-1.9.5-2.fc39.s390 639 kB/s | 9.6 kB     00:00    
(123/152): popt-1.19-3.fc39.s390x.rpm           4.4 MB/s |  69 kB     00:00    
(124/152): publicsuffix-list-dafsa-20230812-1.f 3.7 MB/s |  57 kB     00:00    
(125/152): pyproject-srpm-macros-1.10.0-1.fc40. 945 kB/s |  14 kB     00:00    
(126/152): python-srpm-macros-3.12-5.fc40.noarc 1.6 MB/s |  25 kB     00:00    
(127/152): qt5-srpm-macros-5.15.11-1.fc40.noarc 550 kB/s | 8.3 kB     00:00    
(128/152): qt6-srpm-macros-6.6.1-1.fc40.noarch. 572 kB/s | 8.6 kB     00:00    
(129/152): readline-8.2-4.fc39.s390x.rpm         14 MB/s | 229 kB     00:00    
(130/152): redhat-rpm-config-271-1.fc40.noarch. 5.0 MB/s |  81 kB     00:00    
(131/152): rpm-4.19.1-1.fc40.s390x.rpm           32 MB/s | 537 kB     00:00    
(132/152): rpm-build-4.19.1-1.fc40.s390x.rpm    5.1 MB/s |  79 kB     00:00    
(133/152): rpm-build-libs-4.19.1-1.fc40.s390x.r 6.2 MB/s |  97 kB     00:00    
(134/152): rpm-libs-4.19.1-1.fc40.s390x.rpm      20 MB/s | 324 kB     00:00    
(135/152): rust-srpm-macros-25.2-2.fc40.noarch. 863 kB/s |  13 kB     00:00    
(136/152): rpm-sequoia-1.5.0-2.fc40.s390x.rpm    56 MB/s | 1.0 MB     00:00    
(137/152): sed-4.8-14.fc39.s390x.rpm             19 MB/s | 309 kB     00:00    
(138/152): setup-2.14.5-1.fc40.noarch.rpm       9.6 MB/s | 155 kB     00:00    
(139/152): shadow-utils-4.14.0-2.fc40.s390x.rpm  70 MB/s | 1.3 MB     00:00    
(140/152): sqlite-libs-3.44.2-1.fc40.s390x.rpm   42 MB/s | 742 kB     00:00    
(141/152): systemd-libs-255-1.fc40.s390x.rpm     37 MB/s | 711 kB     00:00    
(142/152): unzip-6.0-62.fc39.s390x.rpm           12 MB/s | 194 kB     00:00    
(143/152): tar-1.35-2.fc40.s390x.rpm             49 MB/s | 874 kB     00:00    
(144/152): util-linux-core-2.39.2-1.fc40.s390x.  29 MB/s | 496 kB     00:00    
(145/152): which-2.21-40.fc39.s390x.rpm         2.7 MB/s |  43 kB     00:00    
(146/152): util-linux-2.39.2-1.fc40.s390x.rpm    53 MB/s | 1.1 MB     00:00    
(147/152): xxhash-libs-0.8.2-1.fc39.s390x.rpm   2.3 MB/s |  37 kB     00:00    
(148/152): xz-5.4.5-1.fc40.s390x.rpm             33 MB/s | 558 kB     00:00    
(149/152): xz-libs-5.4.5-1.fc40.s390x.rpm       7.3 MB/s | 114 kB     00:00    
(150/152): zip-3.0-39.fc40.s390x.rpm             18 MB/s | 283 kB     00:00    
(151/152): zlib-1.2.13-5.fc40.s390x.rpm         6.4 MB/s | 101 kB     00:00    
(152/152): zstd-1.5.5-4.fc39.s390x.rpm           28 MB/s | 506 kB     00:00    
--------------------------------------------------------------------------------
Total                                           8.5 MB/s |  52 MB     00:06     
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0xA15B79CC:
 Userid     : "Fedora (40) <fedora-40-primary@fedoraproject.org>"
 Fingerprint: 115D F9AE F857 853E E844 5D0A 0727 707E A15B 79CC
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary
Key imported successfully
fedora                                          1.6 MB/s | 1.6 kB     00:00    
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary (0xA15B79CC) is already installed
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0x18B8E74C:
 Userid     : "Fedora (39) <fedora-39-primary@fedoraproject.org>"
 Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.18-6.fc39.s390x                           1/1 
  Preparing        :                                                        1/1 
  Installing       : libgcc-13.2.1-6.fc40.s390x                           1/152 
  Running scriptlet: libgcc-13.2.1-6.fc40.s390x                           1/152 
  Installing       : crypto-policies-20231204-1.git1e3a2e4.fc40.noarc     2/152 
  Running scriptlet: crypto-policies-20231204-1.git1e3a2e4.fc40.noarc     2/152 
  Installing       : fedora-release-identity-basic-40-0.20.noarch         3/152 
  Installing       : fedora-repos-rawhide-40-0.2.noarch                   4/152 
  Installing       : fedora-gpg-keys-40-0.2.noarch                        5/152 
  Installing       : fedora-repos-40-0.2.noarch                           6/152 
  Installing       : fedora-release-common-40-0.20.noarch                 7/152 
  Installing       : fedora-release-40-0.20.noarch                        8/152 
  Installing       : setup-2.14.5-1.fc40.noarch                           9/152 
warning: /etc/hosts created as /etc/hosts.rpmnew

  Running scriptlet: setup-2.14.5-1.fc40.noarch                           9/152 
  Installing       : filesystem-3.18-6.fc39.s390x                        10/152 
  Installing       : basesystem-11-18.fc39.noarch                        11/152 
  Installing       : rust-srpm-macros-25.2-2.fc40.noarch                 12/152 
  Installing       : qt6-srpm-macros-6.6.1-1.fc40.noarch                 13/152 
  Installing       : qt5-srpm-macros-5.15.11-1.fc40.noarch               14/152 
  Installing       : publicsuffix-list-dafsa-20230812-1.fc40.noarch      15/152 
  Installing       : pkgconf-m4-1.9.5-2.fc39.noarch                      16/152 
  Installing       : perl-srpm-macros-1-51.fc39.noarch                   17/152 
  Installing       : pcre2-syntax-10.42-2.fc40.noarch                    18/152 
  Installing       : package-notes-srpm-macros-0.5-9.fc39.noarch         19/152 
  Installing       : openblas-srpm-macros-2-14.fc39.noarch               20/152 
  Installing       : ocaml-srpm-macros-9-1.fc40.noarch                   21/152 
  Installing       : ncurses-base-6.4-8.20231001.fc40.noarch             22/152 
  Installing       : glibc-gconv-extra-2.38.9000-27.fc40.s390x           23/152 
  Running scriptlet: glibc-gconv-extra-2.38.9000-27.fc40.s390x           23/152 
  Installing       : glibc-minimal-langpack-2.38.9000-27.fc40.s390x      24/152 
  Installing       : glibc-common-2.38.9000-27.fc40.s390x                25/152 
  Running scriptlet: glibc-2.38.9000-27.fc40.s390x                       26/152 
  Installing       : glibc-2.38.9000-27.fc40.s390x                       26/152 
  Running scriptlet: glibc-2.38.9000-27.fc40.s390x                       26/152 
  Installing       : ncurses-libs-6.4-8.20231001.fc40.s390x              27/152 
  Installing       : bash-5.2.21-2.fc40.s390x                            28/152 
  Running scriptlet: bash-5.2.21-2.fc40.s390x                            28/152 
  Installing       : zlib-1.2.13-5.fc40.s390x                            29/152 
  Installing       : xz-libs-5.4.5-1.fc40.s390x                          30/152 
  Installing       : bzip2-libs-1.0.8-16.fc39.s390x                      31/152 
  Installing       : readline-8.2-4.fc39.s390x                           32/152 
  Installing       : libstdc++-13.2.1-6.fc40.s390x                       33/152 
  Installing       : libuuid-2.39.2-1.fc40.s390x                         34/152 
  Installing       : libzstd-1.5.5-4.fc39.s390x                          35/152 
  Installing       : elfutils-libelf-0.190-4.fc40.s390x                  36/152 
  Installing       : popt-1.19-3.fc39.s390x                              37/152 
  Installing       : libblkid-2.39.2-1.fc40.s390x                        38/152 
  Installing       : gmp-1:6.2.1-5.fc39.s390x                            39/152 
  Installing       : libattr-2.5.1-9.fc40.s390x                          40/152 
  Installing       : libacl-2.3.1-11.fc40.s390x                          41/152 
  Installing       : libxcrypt-4.4.36-2.fc39.s390x                       42/152 
  Installing       : gdbm-libs-1:1.23-4.fc39.s390x                       43/152 
  Installing       : libeconf-0.5.2-1.fc40.s390x                         44/152 
  Installing       : lz4-libs-1.9.4-4.fc39.s390x                         45/152 
  Installing       : mpfr-4.2.1-1.fc40.s390x                             46/152 
  Installing       : dwz-0.15-3.fc39.s390x                               47/152 
  Installing       : unzip-6.0-62.fc39.s390x                             48/152 
  Installing       : file-libs-5.45-1.fc40.s390x                         49/152 
  Installing       : file-5.45-1.fc40.s390x                              50/152 
  Installing       : alternatives-1.25-1.fc39.s390x                      51/152 
  Installing       : jansson-2.13.1-7.fc39.s390x                         52/152 
  Installing       : libcap-ng-0.8.3-8.fc40.s390x                        53/152 
  Installing       : audit-libs-3.1.2-5.fc40.s390x                       54/152 
  Installing       : pam-libs-1.5.3-8.fc40.s390x                         55/152 
  Installing       : libcap-2.69-1.fc40.s390x                            56/152 
  Installing       : systemd-libs-255-1.fc40.s390x                       57/152 
  Installing       : libcom_err-1.47.0-2.fc39.s390x                      58/152 
  Installing       : libsepol-3.6-0.rc2.1.fc40.s390x                     59/152 
  Installing       : libsmartcols-2.39.2-1.fc40.s390x                    60/152 
  Installing       : libtasn1-4.19.0-3.fc39.s390x                        61/152 
  Installing       : libunistring-1.1-5.fc40.s390x                       62/152 
  Installing       : libidn2-2.3.4-3.fc39.s390x                          63/152 
  Installing       : lua-libs-5.4.6-3.fc39.s390x                         64/152 
  Installing       : pcre2-10.42-2.fc40.s390x                            65/152 
  Installing       : libselinux-3.6-0.rc2.1.fc40.s390x                   66/152 
  Installing       : sed-4.8-14.fc39.s390x                               67/152 
  Installing       : grep-3.11-5.fc40.s390x                              68/152 
  Installing       : findutils-1:4.9.0-6.fc40.s390x                      69/152 
  Installing       : xz-5.4.5-1.fc40.s390x                               70/152 
  Installing       : libmount-2.39.2-1.fc40.s390x                        71/152 
  Installing       : util-linux-core-2.39.2-1.fc40.s390x                 72/152 
  Installing       : libsemanage-3.6-0.rc2.1.fc40.s390x                  73/152 
  Installing       : shadow-utils-2:4.14.0-2.fc40.s390x                  74/152 
  Running scriptlet: libutempter-1.2.1-10.fc39.s390x                     75/152 
  Installing       : libutempter-1.2.1-10.fc39.s390x                     75/152 
  Installing       : tar-2:1.35-2.fc40.s390x                             76/152 
  Installing       : libpsl-0.21.2-4.fc39.s390x                          77/152 
  Installing       : zip-3.0-39.fc40.s390x                               78/152 
  Installing       : zstd-1.5.5-4.fc39.s390x                             79/152 
  Installing       : cyrus-sasl-lib-2.1.28-11.fc39.s390x                 80/152 
  Installing       : gdbm-1:1.23-4.fc39.s390x                            81/152 
  Installing       : libfdisk-2.39.2-1.fc40.s390x                        82/152 
  Installing       : bzip2-1.0.8-16.fc39.s390x                           83/152 
  Installing       : libxml2-2.12.3-1.fc40.s390x                         84/152 
  Installing       : sqlite-libs-3.44.2-1.fc40.s390x                     85/152 
  Installing       : ed-1.19-4.fc39.s390x                                86/152 
  Installing       : patch-2.7.6-22.fc39.s390x                           87/152 
  Installing       : elfutils-default-yama-scope-0.190-4.fc40.noarch     88/152 
  Running scriptlet: elfutils-default-yama-scope-0.190-4.fc40.noarch     88/152 
  Installing       : cpio-2.14-5.fc40.s390x                              89/152 
  Installing       : diffutils-3.10-3.fc39.s390x                         90/152 
  Installing       : keyutils-libs-1.6.1-7.fc39.s390x                    91/152 
  Installing       : libbrotli-1.1.0-1.fc40.s390x                        92/152 
  Installing       : libffi-3.4.4-4.fc39.s390x                           93/152 
  Installing       : p11-kit-0.25.3-1.fc40.s390x                         94/152 
  Installing       : p11-kit-trust-0.25.3-1.fc40.s390x                   95/152 
  Running scriptlet: p11-kit-trust-0.25.3-1.fc40.s390x                   95/152 
  Installing       : libgomp-13.2.1-6.fc40.s390x                         96/152 
  Installing       : libnghttp2-1.58.0-1.fc40.s390x                      97/152 
  Installing       : libpkgconf-1.9.5-2.fc39.s390x                       98/152 
  Installing       : pkgconf-1.9.5-2.fc39.s390x                          99/152 
  Installing       : pkgconf-pkg-config-1.9.5-2.fc39.s390x              100/152 
  Installing       : libsigsegv-2.14-5.fc39.s390x                       101/152 
  Installing       : gawk-5.2.2-2.fc39.s390x                            102/152 
  Installing       : libverto-0.3.2-6.fc39.s390x                        103/152 
  Installing       : xxhash-libs-0.8.2-1.fc39.s390x                     104/152 
  Installing       : libssh-config-0.10.5-2.fc39.noarch                 105/152 
  Installing       : kernel-srpm-macros-1.0-20.fc39.noarch              106/152 
  Installing       : gnat-srpm-macros-6-3.fc39.noarch                   107/152 
  Installing       : ghc-srpm-macros-1.6.1-3.fc40.noarch                108/152 
  Installing       : fpc-srpm-macros-1.3-8.fc39.noarch                  109/152 
  Installing       : coreutils-common-9.4-1.fc40.s390x                  110/152 
  Installing       : openssl-libs-1:3.1.4-1.fc40.s390x                  111/152 
  Installing       : coreutils-9.4-1.fc40.s390x                         112/152 
  Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch   113/152 
  Installing       : ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch   113/152 
  Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch   113/152 
  Installing       : krb5-libs-1.21.2-2.fc40.s390x                      114/152 
  Installing       : libtirpc-1.3.4-0.fc40.s390x                        115/152 
  Running scriptlet: authselect-libs-1.4.3-1.fc40.s390x                 116/152 
  Installing       : authselect-libs-1.4.3-1.fc40.s390x                 116/152 
  Installing       : gzip-1.12-6.fc39.s390x                             117/152 
  Installing       : cracklib-2.9.11-2.fc39.s390x                       118/152 
  Installing       : libpwquality-1.4.5-6.fc39.s390x                    119/152 
  Installing       : authselect-1.4.3-1.fc40.s390x                      120/152 
  Installing       : libnsl2-2.0.0-6.fc39.s390x                         121/152 
  Installing       : pam-1.5.3-8.fc40.s390x                             122/152 
  Installing       : libssh-0.10.5-2.fc39.s390x                         123/152 
  Installing       : libarchive-3.7.2-1.fc40.s390x                      124/152 
  Installing       : libevent-2.1.12-9.fc39.s390x                       125/152 
  Installing       : openldap-2.6.6-1.fc39.s390x                        126/152 
  Installing       : libcurl-8.5.0-1.fc40.s390x                         127/152 
  Installing       : elfutils-libs-0.190-4.fc40.s390x                   128/152 
  Installing       : elfutils-debuginfod-client-0.190-4.fc40.s390x      129/152 
  Installing       : binutils-gold-2.41-16.fc40.s390x                   130/152 
  Running scriptlet: binutils-gold-2.41-16.fc40.s390x                   130/152 
  Installing       : binutils-2.41-16.fc40.s390x                        131/152 
  Running scriptlet: binutils-2.41-16.fc40.s390x                        131/152 
  Installing       : elfutils-0.190-4.fc40.s390x                        132/152 
  Installing       : gdb-minimal-14.1-1.fc40.s390x                      133/152 
  Installing       : debugedit-5.0-12.fc40.s390x                        134/152 
  Installing       : curl-8.5.0-1.fc40.s390x                            135/152 
  Installing       : rpm-sequoia-1.5.0-2.fc40.s390x                     136/152 
  Installing       : rpm-libs-4.19.1-1.fc40.s390x                       137/152 
  Running scriptlet: rpm-4.19.1-1.fc40.s390x                            138/152 
  Installing       : rpm-4.19.1-1.fc40.s390x                            138/152 
  Installing       : efi-srpm-macros-5-9.fc39.noarch                    139/152 
  Installing       : lua-srpm-macros-1-9.fc39.noarch                    140/152 
  Installing       : rpm-build-libs-4.19.1-1.fc40.s390x                 141/152 
  Installing       : ansible-srpm-macros-1-11.fc39.noarch               142/152 
  Installing       : fonts-srpm-macros-1:2.0.5-12.fc39.noarch           143/152 
  Installing       : forge-srpm-macros-0.2.0-1.fc40.noarch              144/152 
  Installing       : go-srpm-macros-3.3.1-1.fc40.noarch                 145/152 
  Installing       : python-srpm-macros-3.12-5.fc40.noarch              146/152 
  Installing       : redhat-rpm-config-271-1.fc40.noarch                147/152 
  Installing       : rpm-build-4.19.1-1.fc40.s390x                      148/152 
  Installing       : pyproject-srpm-macros-1.10.0-1.fc40.noarch         149/152 
  Installing       : util-linux-2.39.2-1.fc40.s390x                     150/152 
  Installing       : which-2.21-40.fc39.s390x                           151/152 
  Installing       : info-7.1-1.fc40.s390x                              152/152 
  Running scriptlet: filesystem-3.18-6.fc39.s390x                       152/152 
  Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch   152/152 
  Running scriptlet: authselect-libs-1.4.3-1.fc40.s390x                 152/152 
  Running scriptlet: rpm-4.19.1-1.fc40.s390x                            152/152 
  Running scriptlet: info-7.1-1.fc40.s390x                              152/152 

Installed:
  alternatives-1.25-1.fc39.s390x                                                
  ansible-srpm-macros-1-11.fc39.noarch                                          
  audit-libs-3.1.2-5.fc40.s390x                                                 
  authselect-1.4.3-1.fc40.s390x                                                 
  authselect-libs-1.4.3-1.fc40.s390x                                            
  basesystem-11-18.fc39.noarch                                                  
  bash-5.2.21-2.fc40.s390x                                                      
  binutils-2.41-16.fc40.s390x                                                   
  binutils-gold-2.41-16.fc40.s390x                                              
  bzip2-1.0.8-16.fc39.s390x                                                     
  bzip2-libs-1.0.8-16.fc39.s390x                                                
  ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch                              
  coreutils-9.4-1.fc40.s390x                                                    
  coreutils-common-9.4-1.fc40.s390x                                             
  cpio-2.14-5.fc40.s390x                                                        
  cracklib-2.9.11-2.fc39.s390x                                                  
  crypto-policies-20231204-1.git1e3a2e4.fc40.noarch                             
  curl-8.5.0-1.fc40.s390x                                                       
  cyrus-sasl-lib-2.1.28-11.fc39.s390x                                           
  debugedit-5.0-12.fc40.s390x                                                   
  diffutils-3.10-3.fc39.s390x                                                   
  dwz-0.15-3.fc39.s390x                                                         
  ed-1.19-4.fc39.s390x                                                          
  efi-srpm-macros-5-9.fc39.noarch                                               
  elfutils-0.190-4.fc40.s390x                                                   
  elfutils-debuginfod-client-0.190-4.fc40.s390x                                 
  elfutils-default-yama-scope-0.190-4.fc40.noarch                               
  elfutils-libelf-0.190-4.fc40.s390x                                            
  elfutils-libs-0.190-4.fc40.s390x                                              
  fedora-gpg-keys-40-0.2.noarch                                                 
  fedora-release-40-0.20.noarch                                                 
  fedora-release-common-40-0.20.noarch                                          
  fedora-release-identity-basic-40-0.20.noarch                                  
  fedora-repos-40-0.2.noarch                                                    
  fedora-repos-rawhide-40-0.2.noarch                                            
  file-5.45-1.fc40.s390x                                                        
  file-libs-5.45-1.fc40.s390x                                                   
  filesystem-3.18-6.fc39.s390x                                                  
  findutils-1:4.9.0-6.fc40.s390x                                                
  fonts-srpm-macros-1:2.0.5-12.fc39.noarch                                      
  forge-srpm-macros-0.2.0-1.fc40.noarch                                         
  fpc-srpm-macros-1.3-8.fc39.noarch                                             
  gawk-5.2.2-2.fc39.s390x                                                       
  gdb-minimal-14.1-1.fc40.s390x                                                 
  gdbm-1:1.23-4.fc39.s390x                                                      
  gdbm-libs-1:1.23-4.fc39.s390x                                                 
  ghc-srpm-macros-1.6.1-3.fc40.noarch                                           
  glibc-2.38.9000-27.fc40.s390x                                                 
  glibc-common-2.38.9000-27.fc40.s390x                                          
  glibc-gconv-extra-2.38.9000-27.fc40.s390x                                     
  glibc-minimal-langpack-2.38.9000-27.fc40.s390x                                
  gmp-1:6.2.1-5.fc39.s390x                                                      
  gnat-srpm-macros-6-3.fc39.noarch                                              
  go-srpm-macros-3.3.1-1.fc40.noarch                                            
  grep-3.11-5.fc40.s390x                                                        
  gzip-1.12-6.fc39.s390x                                                        
  info-7.1-1.fc40.s390x                                                         
  jansson-2.13.1-7.fc39.s390x                                                   
  kernel-srpm-macros-1.0-20.fc39.noarch                                         
  keyutils-libs-1.6.1-7.fc39.s390x                                              
  krb5-libs-1.21.2-2.fc40.s390x                                                 
  libacl-2.3.1-11.fc40.s390x                                                    
  libarchive-3.7.2-1.fc40.s390x                                                 
  libattr-2.5.1-9.fc40.s390x                                                    
  libblkid-2.39.2-1.fc40.s390x                                                  
  libbrotli-1.1.0-1.fc40.s390x                                                  
  libcap-2.69-1.fc40.s390x                                                      
  libcap-ng-0.8.3-8.fc40.s390x                                                  
  libcom_err-1.47.0-2.fc39.s390x                                                
  libcurl-8.5.0-1.fc40.s390x                                                    
  libeconf-0.5.2-1.fc40.s390x                                                   
  libevent-2.1.12-9.fc39.s390x                                                  
  libfdisk-2.39.2-1.fc40.s390x                                                  
  libffi-3.4.4-4.fc39.s390x                                                     
  libgcc-13.2.1-6.fc40.s390x                                                    
  libgomp-13.2.1-6.fc40.s390x                                                   
  libidn2-2.3.4-3.fc39.s390x                                                    
  libmount-2.39.2-1.fc40.s390x                                                  
  libnghttp2-1.58.0-1.fc40.s390x                                                
  libnsl2-2.0.0-6.fc39.s390x                                                    
  libpkgconf-1.9.5-2.fc39.s390x                                                 
  libpsl-0.21.2-4.fc39.s390x                                                    
  libpwquality-1.4.5-6.fc39.s390x                                               
  libselinux-3.6-0.rc2.1.fc40.s390x                                             
  libsemanage-3.6-0.rc2.1.fc40.s390x                                            
  libsepol-3.6-0.rc2.1.fc40.s390x                                               
  libsigsegv-2.14-5.fc39.s390x                                                  
  libsmartcols-2.39.2-1.fc40.s390x                                              
  libssh-0.10.5-2.fc39.s390x                                                    
  libssh-config-0.10.5-2.fc39.noarch                                            
  libstdc++-13.2.1-6.fc40.s390x                                                 
  libtasn1-4.19.0-3.fc39.s390x                                                  
  libtirpc-1.3.4-0.fc40.s390x                                                   
  libunistring-1.1-5.fc40.s390x                                                 
  libutempter-1.2.1-10.fc39.s390x                                               
  libuuid-2.39.2-1.fc40.s390x                                                   
  libverto-0.3.2-6.fc39.s390x                                                   
  libxcrypt-4.4.36-2.fc39.s390x                                                 
  libxml2-2.12.3-1.fc40.s390x                                                   
  libzstd-1.5.5-4.fc39.s390x                                                    
  lua-libs-5.4.6-3.fc39.s390x                                                   
  lua-srpm-macros-1-9.fc39.noarch                                               
  lz4-libs-1.9.4-4.fc39.s390x                                                   
  mpfr-4.2.1-1.fc40.s390x                                                       
  ncurses-base-6.4-8.20231001.fc40.noarch                                       
  ncurses-libs-6.4-8.20231001.fc40.s390x                                        
  ocaml-srpm-macros-9-1.fc40.noarch                                             
  openblas-srpm-macros-2-14.fc39.noarch                                         
  openldap-2.6.6-1.fc39.s390x                                                   
  openssl-libs-1:3.1.4-1.fc40.s390x                                             
  p11-kit-0.25.3-1.fc40.s390x                                                   
  p11-kit-trust-0.25.3-1.fc40.s390x                                             
  package-notes-srpm-macros-0.5-9.fc39.noarch                                   
  pam-1.5.3-8.fc40.s390x                                                        
  pam-libs-1.5.3-8.fc40.s390x                                                   
  patch-2.7.6-22.fc39.s390x                                                     
  pcre2-10.42-2.fc40.s390x                                                      
  pcre2-syntax-10.42-2.fc40.noarch                                              
  perl-srpm-macros-1-51.fc39.noarch                                             
  pkgconf-1.9.5-2.fc39.s390x                                                    
  pkgconf-m4-1.9.5-2.fc39.noarch                                                
  pkgconf-pkg-config-1.9.5-2.fc39.s390x                                         
  popt-1.19-3.fc39.s390x                                                        
  publicsuffix-list-dafsa-20230812-1.fc40.noarch                                
  pyproject-srpm-macros-1.10.0-1.fc40.noarch                                    
  python-srpm-macros-3.12-5.fc40.noarch                                         
  qt5-srpm-macros-5.15.11-1.fc40.noarch                                         
  qt6-srpm-macros-6.6.1-1.fc40.noarch                                           
  readline-8.2-4.fc39.s390x                                                     
  redhat-rpm-config-271-1.fc40.noarch                                           
  rpm-4.19.1-1.fc40.s390x                                                       
  rpm-build-4.19.1-1.fc40.s390x                                                 
  rpm-build-libs-4.19.1-1.fc40.s390x                                            
  rpm-libs-4.19.1-1.fc40.s390x                                                  
  rpm-sequoia-1.5.0-2.fc40.s390x                                                
  rust-srpm-macros-25.2-2.fc40.noarch                                           
  sed-4.8-14.fc39.s390x                                                         
  setup-2.14.5-1.fc40.noarch                                                    
  shadow-utils-2:4.14.0-2.fc40.s390x                                            
  sqlite-libs-3.44.2-1.fc40.s390x                                               
  systemd-libs-255-1.fc40.s390x                                                 
  tar-2:1.35-2.fc40.s390x                                                       
  unzip-6.0-62.fc39.s390x                                                       
  util-linux-2.39.2-1.fc40.s390x                                                
  util-linux-core-2.39.2-1.fc40.s390x                                           
  which-2.21-40.fc39.s390x                                                      
  xxhash-libs-0.8.2-1.fc39.s390x                                                
  xz-5.4.5-1.fc40.s390x                                                         
  xz-libs-5.4.5-1.fc40.s390x                                                    
  zip-3.0-39.fc40.s390x                                                         
  zlib-1.2.13-5.fc40.s390x                                                      
  zstd-1.5.5-4.fc39.s390x                                                       

Complete!
Finish: installing minimal buildroot with dnf
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: alternatives-1.25-1.fc39.s390x
ansible-srpm-macros-1-11.fc39.noarch
audit-libs-3.1.2-5.fc40.s390x
authselect-1.4.3-1.fc40.s390x
authselect-libs-1.4.3-1.fc40.s390x
basesystem-11-18.fc39.noarch
bash-5.2.21-2.fc40.s390x
binutils-2.41-16.fc40.s390x
binutils-gold-2.41-16.fc40.s390x
bzip2-1.0.8-16.fc39.s390x
bzip2-libs-1.0.8-16.fc39.s390x
ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch
coreutils-9.4-1.fc40.s390x
coreutils-common-9.4-1.fc40.s390x
cpio-2.14-5.fc40.s390x
cracklib-2.9.11-2.fc39.s390x
crypto-policies-20231204-1.git1e3a2e4.fc40.noarch
curl-8.5.0-1.fc40.s390x
cyrus-sasl-lib-2.1.28-11.fc39.s390x
debugedit-5.0-12.fc40.s390x
diffutils-3.10-3.fc39.s390x
dwz-0.15-3.fc39.s390x
ed-1.19-4.fc39.s390x
efi-srpm-macros-5-9.fc39.noarch
elfutils-0.190-4.fc40.s390x
elfutils-debuginfod-client-0.190-4.fc40.s390x
elfutils-default-yama-scope-0.190-4.fc40.noarch
elfutils-libelf-0.190-4.fc40.s390x
elfutils-libs-0.190-4.fc40.s390x
fedora-gpg-keys-40-0.2.noarch
fedora-release-40-0.20.noarch
fedora-release-common-40-0.20.noarch
fedora-release-identity-basic-40-0.20.noarch
fedora-repos-40-0.2.noarch
fedora-repos-rawhide-40-0.2.noarch
file-5.45-1.fc40.s390x
file-libs-5.45-1.fc40.s390x
filesystem-3.18-6.fc39.s390x
findutils-4.9.0-6.fc40.s390x
fonts-srpm-macros-2.0.5-12.fc39.noarch
forge-srpm-macros-0.2.0-1.fc40.noarch
fpc-srpm-macros-1.3-8.fc39.noarch
gawk-5.2.2-2.fc39.s390x
gdb-minimal-14.1-1.fc40.s390x
gdbm-1.23-4.fc39.s390x
gdbm-libs-1.23-4.fc39.s390x
ghc-srpm-macros-1.6.1-3.fc40.noarch
glibc-2.38.9000-27.fc40.s390x
glibc-common-2.38.9000-27.fc40.s390x
glibc-gconv-extra-2.38.9000-27.fc40.s390x
glibc-minimal-langpack-2.38.9000-27.fc40.s390x
gmp-6.2.1-5.fc39.s390x
gnat-srpm-macros-6-3.fc39.noarch
go-srpm-macros-3.3.1-1.fc40.noarch
gpg-pubkey-18b8e74c-62f2920f
gpg-pubkey-a15b79cc-63d04c2c
grep-3.11-5.fc40.s390x
gzip-1.12-6.fc39.s390x
info-7.1-1.fc40.s390x
jansson-2.13.1-7.fc39.s390x
kernel-srpm-macros-1.0-20.fc39.noarch
keyutils-libs-1.6.1-7.fc39.s390x
krb5-libs-1.21.2-2.fc40.s390x
libacl-2.3.1-11.fc40.s390x
libarchive-3.7.2-1.fc40.s390x
libattr-2.5.1-9.fc40.s390x
libblkid-2.39.2-1.fc40.s390x
libbrotli-1.1.0-1.fc40.s390x
libcap-2.69-1.fc40.s390x
libcap-ng-0.8.3-8.fc40.s390x
libcom_err-1.47.0-2.fc39.s390x
libcurl-8.5.0-1.fc40.s390x
libeconf-0.5.2-1.fc40.s390x
libevent-2.1.12-9.fc39.s390x
libfdisk-2.39.2-1.fc40.s390x
libffi-3.4.4-4.fc39.s390x
libgcc-13.2.1-6.fc40.s390x
libgomp-13.2.1-6.fc40.s390x
libidn2-2.3.4-3.fc39.s390x
libmount-2.39.2-1.fc40.s390x
libnghttp2-1.58.0-1.fc40.s390x
libnsl2-2.0.0-6.fc39.s390x
libpkgconf-1.9.5-2.fc39.s390x
libpsl-0.21.2-4.fc39.s390x
libpwquality-1.4.5-6.fc39.s390x
libselinux-3.6-0.rc2.1.fc40.s390x
libsemanage-3.6-0.rc2.1.fc40.s390x
libsepol-3.6-0.rc2.1.fc40.s390x
libsigsegv-2.14-5.fc39.s390x
libsmartcols-2.39.2-1.fc40.s390x
libssh-0.10.5-2.fc39.s390x
libssh-config-0.10.5-2.fc39.noarch
libstdc++-13.2.1-6.fc40.s390x
libtasn1-4.19.0-3.fc39.s390x
libtirpc-1.3.4-0.fc40.s390x
libunistring-1.1-5.fc40.s390x
libutempter-1.2.1-10.fc39.s390x
libuuid-2.39.2-1.fc40.s390x
libverto-0.3.2-6.fc39.s390x
libxcrypt-4.4.36-2.fc39.s390x
libxml2-2.12.3-1.fc40.s390x
libzstd-1.5.5-4.fc39.s390x
lua-libs-5.4.6-3.fc39.s390x
lua-srpm-macros-1-9.fc39.noarch
lz4-libs-1.9.4-4.fc39.s390x
mpfr-4.2.1-1.fc40.s390x
ncurses-base-6.4-8.20231001.fc40.noarch
ncurses-libs-6.4-8.20231001.fc40.s390x
ocaml-srpm-macros-9-1.fc40.noarch
openblas-srpm-macros-2-14.fc39.noarch
openldap-2.6.6-1.fc39.s390x
openssl-libs-3.1.4-1.fc40.s390x
p11-kit-0.25.3-1.fc40.s390x
p11-kit-trust-0.25.3-1.fc40.s390x
package-notes-srpm-macros-0.5-9.fc39.noarch
pam-1.5.3-8.fc40.s390x
pam-libs-1.5.3-8.fc40.s390x
patch-2.7.6-22.fc39.s390x
pcre2-10.42-2.fc40.s390x
pcre2-syntax-10.42-2.fc40.noarch
perl-srpm-macros-1-51.fc39.noarch
pkgconf-1.9.5-2.fc39.s390x
pkgconf-m4-1.9.5-2.fc39.noarch
pkgconf-pkg-config-1.9.5-2.fc39.s390x
popt-1.19-3.fc39.s390x
publicsuffix-list-dafsa-20230812-1.fc40.noarch
pyproject-srpm-macros-1.10.0-1.fc40.noarch
python-srpm-macros-3.12-5.fc40.noarch
qt5-srpm-macros-5.15.11-1.fc40.noarch
qt6-srpm-macros-6.6.1-1.fc40.noarch
readline-8.2-4.fc39.s390x
redhat-rpm-config-271-1.fc40.noarch
rpm-4.19.1-1.fc40.s390x
rpm-build-4.19.1-1.fc40.s390x
rpm-build-libs-4.19.1-1.fc40.s390x
rpm-libs-4.19.1-1.fc40.s390x
rpm-sequoia-1.5.0-2.fc40.s390x
rust-srpm-macros-25.2-2.fc40.noarch
sed-4.8-14.fc39.s390x
setup-2.14.5-1.fc40.noarch
shadow-utils-4.14.0-2.fc40.s390x
sqlite-libs-3.44.2-1.fc40.s390x
systemd-libs-255-1.fc40.s390x
tar-1.35-2.fc40.s390x
unzip-6.0-62.fc39.s390x
util-linux-2.39.2-1.fc40.s390x
util-linux-core-2.39.2-1.fc40.s390x
which-2.21-40.fc39.s390x
xxhash-libs-0.8.2-1.fc39.s390x
xz-5.4.5-1.fc40.s390x
xz-libs-5.4.5-1.fc40.s390x
zip-3.0-39.fc40.s390x
zlib-1.2.13-5.fc40.s390x
zstd-1.5.5-4.fc39.s390x
Start: buildsrpm
Start: rpmbuild -bs
warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1689811200
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-16.fc40.src.rpm

RPM build warnings:
    %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Finish: rpmbuild -bs
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-s390x-1702482417.624082/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-s390x-1702482417.624082/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-s390x-1702482417.624082/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-cux355ml/mmseq/mmseq.spec) Config(child) 2 minutes 0 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-16.fc40.src.rpm)  Config(fedora-rawhide-s390x)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1702482417.624082/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1702482417.624082/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1702482417.624082/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Finish: chroot init
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.1-1.fc40.s390x
  rpm-sequoia-1.5.0-2.fc40.s390x
  python3-dnf-4.18.2-1.fc40.noarch
  python3-dnf-plugins-core-4.4.4-1.fc40.noarch
  yum-4.18.2-1.fc40.noarch
Start: build phase for mmseq-1.0.11-16.fc40.src.rpm
Start: build setup for mmseq-1.0.11-16.fc40.src.rpm
warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1689811200
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-16.fc40.src.rpm

RPM build warnings:
    %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                 291  B/s | 1.5 kB     00:05    
fedora                                          1.1 kB/s | 5.6 kB     00:05    
Dependencies resolved.
================================================================================
 Package                      Arch    Version                  Repository  Size
================================================================================
Installing:
 armadillo-devel              s390x   10.8.2-5.fc39            fedora     2.2 M
 boost-devel                  s390x   1.83.0-0.fc40            copr_base   12 M
 flexiblas-devel              s390x   3.3.1-5.fc39             fedora     117 k
 gcc-c++                      s390x   13.2.1-6.fc40            fedora      11 M
 gsl-devel                    s390x   2.7.1-5.fc39             fedora     653 k
 htslib-devel                 s390x   1.15.1-3.fc39            fedora     105 k
 make                         s390x   1:4.4.1-2.fc39           fedora     605 k
 perl-generators              noarch  1.16-3.fc39              fedora      16 k
 zlib-devel                   s390x   1.2.13-5.fc40            fedora      44 k
Installing dependencies:
 SuperLU                      s390x   6.0.1-1.fc40             fedora     238 k
 SuperLU-devel                s390x   6.0.1-1.fc40             fedora      27 k
 annobin-docs                 noarch  12.33-1.fc40             fedora      91 k
 annobin-plugin-gcc           s390x   12.33-1.fc40             fedora     958 k
 armadillo                    s390x   10.8.2-5.fc39            fedora      39 k
 arpack                       s390x   3.9.1-1.fc40             fedora     224 k
 arpack-devel                 s390x   3.9.1-1.fc40             fedora      22 k
 autoconf                     noarch  2.71-7.fc40              fedora     733 k
 automake                     noarch  1.16.5-14.fc40           fedora     697 k
 boost                        s390x   1.83.0-0.fc40            copr_base   14 k
 boost-atomic                 s390x   1.83.0-0.fc40            copr_base   19 k
 boost-chrono                 s390x   1.83.0-0.fc40            copr_base   26 k
 boost-container              s390x   1.83.0-0.fc40            copr_base   41 k
 boost-context                s390x   1.83.0-0.fc40            copr_base   17 k
 boost-contract               s390x   1.83.0-0.fc40            copr_base   45 k
 boost-coroutine              s390x   1.83.0-0.fc40            copr_base   21 k
 boost-date-time              s390x   1.83.0-0.fc40            copr_base   16 k
 boost-fiber                  s390x   1.83.0-0.fc40            copr_base   43 k
 boost-filesystem             s390x   1.83.0-0.fc40            copr_base   68 k
 boost-graph                  s390x   1.83.0-0.fc40            copr_base  159 k
 boost-iostreams              s390x   1.83.0-0.fc40            copr_base   41 k
 boost-json                   s390x   1.83.0-0.fc40            copr_base  154 k
 boost-locale                 s390x   1.83.0-0.fc40            copr_base  215 k
 boost-log                    s390x   1.83.0-0.fc40            copr_base  498 k
 boost-math                   s390x   1.83.0-0.fc40            copr_base  238 k
 boost-nowide                 s390x   1.83.0-0.fc40            copr_base   21 k
 boost-numpy3                 s390x   1.83.0-0.fc40            copr_base   30 k
 boost-program-options        s390x   1.83.0-0.fc40            copr_base  111 k
 boost-python3                s390x   1.83.0-0.fc40            copr_base   95 k
 boost-random                 s390x   1.83.0-0.fc40            copr_base   24 k
 boost-regex                  s390x   1.83.0-0.fc40            copr_base  123 k
 boost-serialization          s390x   1.83.0-0.fc40            copr_base  136 k
 boost-stacktrace             s390x   1.83.0-0.fc40            copr_base   30 k
 boost-system                 s390x   1.83.0-0.fc40            copr_base   16 k
 boost-test                   s390x   1.83.0-0.fc40            copr_base  250 k
 boost-thread                 s390x   1.83.0-0.fc40            copr_base   62 k
 boost-timer                  s390x   1.83.0-0.fc40            copr_base   22 k
 boost-type_erasure           s390x   1.83.0-0.fc40            copr_base   33 k
 boost-wave                   s390x   1.83.0-0.fc40            copr_base  245 k
 cmake-filesystem             s390x   3.27.7-1.fc40            fedora      19 k
 cpp                          s390x   13.2.1-6.fc40            fedora     8.8 M
 emacs-filesystem             noarch  1:29.1-14.fc40           fedora     7.4 k
 expat                        s390x   2.5.0-3.fc39             fedora     114 k
 flexiblas                    s390x   3.3.1-5.fc39             fedora      33 k
 flexiblas-netlib             s390x   3.3.1-5.fc39             fedora     3.6 M
 flexiblas-netlib64           s390x   3.3.1-5.fc39             fedora     3.5 M
 flexiblas-openblas-openmp    s390x   3.3.1-5.fc39             fedora      17 k
 flexiblas-openblas-openmp64  s390x   3.3.1-5.fc39             fedora      17 k
 gc                           s390x   8.2.2-4.fc39             fedora     114 k
 gcc                          s390x   13.2.1-6.fc40            fedora      28 M
 gcc-gfortran                 s390x   13.2.1-6.fc40            fedora      10 M
 gcc-plugin-annobin           s390x   13.2.1-6.fc40            fedora      49 k
 glibc-devel                  s390x   2.38.9000-27.fc40        fedora     110 k
 glibc-headers-s390           noarch  2.38.9000-27.fc40        fedora     578 k
 groff-base                   s390x   1.23.0-3.fc40            fedora     1.2 M
 gsl                          s390x   2.7.1-5.fc39             fedora     1.2 M
 guile22                      s390x   2.2.7-9.fc39             fedora     6.5 M
 hdf5                         s390x   1.12.1-15.fc40           fedora     2.4 M
 hdf5-devel                   s390x   1.12.1-15.fc40           fedora     1.3 M
 htslib                       s390x   1.15.1-3.fc39            fedora     533 k
 kernel-headers               s390x   6.7.0-0.rc5.41.fc40      fedora     1.6 M
 libaec                       s390x   1.0.6-5.fc39             fedora      45 k
 libaec-devel                 s390x   1.0.6-5.fc39             fedora      12 k
 libasan                      s390x   13.2.1-6.fc40            fedora     510 k
 libatomic                    s390x   13.2.1-6.fc40            fedora      37 k
 libb2                        s390x   0.98.1-9.fc39            fedora      27 k
 libgfortran                  s390x   13.2.1-6.fc40            fedora     580 k
 libicu                       s390x   73.2-2.fc39              fedora      11 M
 libicu-devel                 s390x   73.2-2.fc39              fedora     925 k
 libmpc                       s390x   1.3.1-3.fc39             fedora      73 k
 libstdc++-devel              s390x   13.2.1-6.fc40            fedora     2.6 M
 libtool-ltdl                 s390x   2.4.7-8.fc40             fedora      37 k
 libubsan                     s390x   13.2.1-6.fc40            fedora     222 k
 libxcrypt-devel              s390x   4.4.36-2.fc39            fedora      30 k
 m4                           s390x   1.4.19-7.fc40            fedora     313 k
 metis                        s390x   5.1.0.3-2.fc39           fedora     603 k
 mpdecimal                    s390x   2.5.1-7.fc39             fedora     100 k
 ncurses                      s390x   6.4-8.20231001.fc40      fedora     427 k
 openblas                     s390x   0.3.25-1.fc40            fedora      38 k
 openblas-openmp              s390x   0.3.25-1.fc40            fedora     4.3 M
 openblas-openmp64            s390x   0.3.25-1.fc40            fedora     4.2 M
 perl-AutoLoader              noarch  5.74-503.fc40            fedora      21 k
 perl-B                       s390x   1.88-503.fc40            fedora     178 k
 perl-Carp                    noarch  1.54-500.fc39            fedora      29 k
 perl-Class-Struct            noarch  0.68-503.fc40            fedora      22 k
 perl-Data-Dumper             s390x   2.188-501.fc39           fedora      57 k
 perl-Digest                  noarch  1.20-500.fc39            fedora      25 k
 perl-Digest-MD5              s390x   2.58-501.fc40            fedora      35 k
 perl-DynaLoader              s390x   1.54-503.fc40            fedora      26 k
 perl-Encode                  s390x   4:3.20-501.fc40          fedora     1.7 M
 perl-Errno                   s390x   1.37-503.fc40            fedora      15 k
 perl-Exporter                noarch  5.77-500.fc39            fedora      31 k
 perl-Fcntl                   s390x   1.15-503.fc40            fedora      21 k
 perl-Fedora-VSP              noarch  0.001-32.fc39            fedora      23 k
 perl-File-Basename           noarch  2.86-503.fc40            fedora      17 k
 perl-File-Compare            noarch  1.100.700-503.fc40       fedora      13 k
 perl-File-Copy               noarch  2.41-503.fc40            fedora      20 k
 perl-File-Find               noarch  1.43-503.fc40            fedora      26 k
 perl-File-Path               noarch  2.18-501.fc40            fedora      35 k
 perl-File-Temp               noarch  1:0.231.100-501.fc40     fedora      59 k
 perl-File-stat               noarch  1.13-503.fc40            fedora      17 k
 perl-FileHandle              noarch  2.05-503.fc40            fedora      16 k
 perl-Getopt-Long             noarch  1:2.57-1.fc40            fedora      63 k
 perl-Getopt-Std              noarch  1.13-503.fc40            fedora      16 k
 perl-HTTP-Tiny               noarch  0.088-3.fc39             fedora      56 k
 perl-IO                      s390x   1.52-503.fc40            fedora      82 k
 perl-IO-Socket-IP            noarch  0.42-1.fc39              fedora      42 k
 perl-IO-Socket-SSL           noarch  2.084-1.fc40             fedora     225 k
 perl-IPC-Open3               noarch  1.22-503.fc40            fedora      22 k
 perl-MIME-Base64             s390x   3.16-501.fc40            fedora      30 k
 perl-Mozilla-CA              noarch  20230821-1.fc40          fedora      13 k
 perl-Net-SSLeay              s390x   1.92-10.fc39             fedora     363 k
 perl-POSIX                   s390x   2.13-503.fc40            fedora      98 k
 perl-PathTools               s390x   3.89-500.fc39            fedora      87 k
 perl-Pod-Escapes             noarch  1:1.07-501.fc40          fedora      19 k
 perl-Pod-Perldoc             noarch  3.28.01-501.fc39         fedora      86 k
 perl-Pod-Simple              noarch  1:3.45-4.fc39            fedora     218 k
 perl-Pod-Usage               noarch  4:2.03-500.fc39          fedora      39 k
 perl-Scalar-List-Utils       s390x   5:1.63-500.fc39          fedora      74 k
 perl-SelectSaver             noarch  1.02-503.fc40            fedora      12 k
 perl-Socket                  s390x   4:2.037-3.fc39           fedora      55 k
 perl-Storable                s390x   1:3.32-500.fc39          fedora     100 k
 perl-Symbol                  noarch  1.09-503.fc40            fedora      14 k
 perl-Term-ANSIColor          noarch  5.01-502.fc40            fedora      47 k
 perl-Term-Cap                noarch  1.18-500.fc39            fedora      22 k
 perl-Text-ParseWords         noarch  3.31-500.fc39            fedora      16 k
 perl-Text-Tabs+Wrap          noarch  2023.0511-3.fc39         fedora      22 k
 perl-Thread-Queue            noarch  3.14-501.fc40            fedora      21 k
 perl-Time-Local              noarch  2:1.350-3.fc39           fedora      34 k
 perl-URI                     noarch  5.21-1.fc40              fedora     125 k
 perl-base                    noarch  2.27-503.fc40            fedora      16 k
 perl-constant                noarch  1.33-501.fc39            fedora      22 k
 perl-if                      noarch  0.61.000-503.fc40        fedora      14 k
 perl-interpreter             s390x   4:5.38.2-503.fc40        fedora      72 k
 perl-libnet                  noarch  3.15-501.fc39            fedora     129 k
 perl-libs                    s390x   4:5.38.2-503.fc40        fedora     2.5 M
 perl-locale                  noarch  1.10-503.fc40            fedora      14 k
 perl-macros                  noarch  4:5.38.2-503.fc40        fedora      13 k
 perl-mro                     s390x   1.28-503.fc40            fedora      29 k
 perl-overload                noarch  1.37-503.fc40            fedora      46 k
 perl-overloading             noarch  0.02-503.fc40            fedora      13 k
 perl-parent                  noarch  1:0.241-500.fc39         fedora      14 k
 perl-podlators               noarch  1:5.01-500.fc39          fedora     125 k
 perl-threads                 s390x   1:2.36-500.fc39          fedora      58 k
 perl-threads-shared          s390x   1.68-500.fc39            fedora      45 k
 perl-vars                    noarch  1.05-503.fc40            fedora      13 k
 python-pip-wheel             noarch  23.2.1-1.fc39            fedora     1.5 M
 python3                      s390x   3.12.1-1.fc40            fedora      26 k
 python3-libs                 s390x   3.12.1-1.fc40            fedora     9.2 M
 python3-numpy                s390x   1:1.26.0-2.fc40          fedora     7.1 M
 tzdata                       noarch  2023c-4.fc40             fedora     717 k

Transaction Summary
================================================================================
Install  160 Packages

Total download size: 154 M
Installed size: 622 M
Downloading Packages:
(1/160): boost-atomic-1.83.0-0.fc40.s390x.rpm   192 kB/s |  19 kB     00:00    
(2/160): boost-1.83.0-0.fc40.s390x.rpm          124 kB/s |  14 kB     00:00    
(3/160): boost-chrono-1.83.0-0.fc40.s390x.rpm   206 kB/s |  26 kB     00:00    
(4/160): boost-container-1.83.0-0.fc40.s390x.rp 913 kB/s |  41 kB     00:00    
(5/160): boost-context-1.83.0-0.fc40.s390x.rpm  340 kB/s |  17 kB     00:00    
(6/160): boost-contract-1.83.0-0.fc40.s390x.rpm 840 kB/s |  45 kB     00:00    
(7/160): boost-coroutine-1.83.0-0.fc40.s390x.rp 553 kB/s |  21 kB     00:00    
(8/160): boost-date-time-1.83.0-0.fc40.s390x.rp 472 kB/s |  16 kB     00:00    
(9/160): boost-fiber-1.83.0-0.fc40.s390x.rpm    344 kB/s |  43 kB     00:00    
(10/160): boost-filesystem-1.83.0-0.fc40.s390x. 614 kB/s |  68 kB     00:00    
(11/160): boost-graph-1.83.0-0.fc40.s390x.rpm   1.9 MB/s | 159 kB     00:00    
(12/160): boost-iostreams-1.83.0-0.fc40.s390x.r 521 kB/s |  41 kB     00:00    
(13/160): boost-devel-1.83.0-0.fc40.s390x.rpm    43 MB/s |  12 MB     00:00    
(14/160): boost-json-1.83.0-0.fc40.s390x.rpm    2.4 MB/s | 154 kB     00:00    
(15/160): boost-locale-1.83.0-0.fc40.s390x.rpm  3.3 MB/s | 215 kB     00:00    
(16/160): boost-nowide-1.83.0-0.fc40.s390x.rpm  663 kB/s |  21 kB     00:00    
(17/160): boost-log-1.83.0-0.fc40.s390x.rpm      14 MB/s | 498 kB     00:00    
(18/160): boost-math-1.83.0-0.fc40.s390x.rpm    6.7 MB/s | 238 kB     00:00    
(19/160): boost-numpy3-1.83.0-0.fc40.s390x.rpm  941 kB/s |  30 kB     00:00    
(20/160): boost-program-options-1.83.0-0.fc40.s 3.3 MB/s | 111 kB     00:00    
(21/160): boost-python3-1.83.0-0.fc40.s390x.rpm 2.9 MB/s |  95 kB     00:00    
(22/160): boost-random-1.83.0-0.fc40.s390x.rpm  744 kB/s |  24 kB     00:00    
(23/160): boost-regex-1.83.0-0.fc40.s390x.rpm   3.6 MB/s | 123 kB     00:00    
(24/160): boost-serialization-1.83.0-0.fc40.s39 4.0 MB/s | 136 kB     00:00    
(25/160): boost-stacktrace-1.83.0-0.fc40.s390x. 934 kB/s |  30 kB     00:00    
(26/160): boost-system-1.83.0-0.fc40.s390x.rpm  508 kB/s |  16 kB     00:00    
(27/160): boost-test-1.83.0-0.fc40.s390x.rpm    7.1 MB/s | 250 kB     00:00    
(28/160): boost-thread-1.83.0-0.fc40.s390x.rpm  1.9 MB/s |  62 kB     00:00    
(29/160): boost-timer-1.83.0-0.fc40.s390x.rpm   692 kB/s |  22 kB     00:00    
(30/160): boost-type_erasure-1.83.0-0.fc40.s390 1.0 MB/s |  33 kB     00:00    
(31/160): boost-wave-1.83.0-0.fc40.s390x.rpm    7.3 MB/s | 245 kB     00:00    
(32/160): SuperLU-devel-6.0.1-1.fc40.s390x.rpm  115 kB/s |  27 kB     00:00    
(33/160): annobin-docs-12.33-1.fc40.noarch.rpm  306 kB/s |  91 kB     00:00    
(34/160): armadillo-10.8.2-5.fc39.s390x.rpm     406 kB/s |  39 kB     00:00    
(35/160): SuperLU-6.0.1-1.fc40.s390x.rpm        555 kB/s | 238 kB     00:00    
(36/160): arpack-3.9.1-1.fc40.s390x.rpm         1.7 MB/s | 224 kB     00:00    
(37/160): arpack-devel-3.9.1-1.fc40.s390x.rpm   283 kB/s |  22 kB     00:00    
(38/160): annobin-plugin-gcc-12.33-1.fc40.s390x 2.3 MB/s | 958 kB     00:00    
(39/160): automake-1.16.5-14.fc40.noarch.rpm    6.8 MB/s | 697 kB     00:00    
(40/160): cmake-filesystem-3.27.7-1.fc40.s390x. 292 kB/s |  19 kB     00:00    
(41/160): autoconf-2.71-7.fc40.noarch.rpm       3.9 MB/s | 733 kB     00:00    
(42/160): armadillo-devel-10.8.2-5.fc39.s390x.r 4.8 MB/s | 2.2 MB     00:00    
(43/160): emacs-filesystem-29.1-14.fc40.noarch. 113 kB/s | 7.4 kB     00:00    
(44/160): expat-2.5.0-3.fc39.s390x.rpm          1.8 MB/s | 114 kB     00:00    
(45/160): flexiblas-3.3.1-5.fc39.s390x.rpm      507 kB/s |  33 kB     00:00    
(46/160): flexiblas-devel-3.3.1-5.fc39.s390x.rp 1.5 MB/s | 117 kB     00:00    
(47/160): flexiblas-netlib64-3.3.1-5.fc39.s390x  23 MB/s | 3.5 MB     00:00    
(48/160): flexiblas-netlib-3.3.1-5.fc39.s390x.r  16 MB/s | 3.6 MB     00:00    
(49/160): cpp-13.2.1-6.fc40.s390x.rpm            22 MB/s | 8.8 MB     00:00    
(50/160): flexiblas-openblas-openmp-3.3.1-5.fc3 294 kB/s |  17 kB     00:00    
(51/160): flexiblas-openblas-openmp64-3.3.1-5.f 223 kB/s |  17 kB     00:00    
(52/160): gc-8.2.2-4.fc39.s390x.rpm             1.7 MB/s | 114 kB     00:00    
(53/160): gcc-c++-13.2.1-6.fc40.s390x.rpm        34 MB/s |  11 MB     00:00    
(54/160): gcc-gfortran-13.2.1-6.fc40.s390x.rpm   29 MB/s |  10 MB     00:00    
(55/160): gcc-plugin-annobin-13.2.1-6.fc40.s390 771 kB/s |  49 kB     00:00    
(56/160): glibc-devel-2.38.9000-27.fc40.s390x.r 1.6 MB/s | 110 kB     00:00    
(57/160): glibc-headers-s390-2.38.9000-27.fc40. 7.8 MB/s | 578 kB     00:00    
(58/160): groff-base-1.23.0-3.fc40.s390x.rpm     12 MB/s | 1.2 MB     00:00    
(59/160): gsl-2.7.1-5.fc39.s390x.rpm             13 MB/s | 1.2 MB     00:00    
(60/160): gsl-devel-2.7.1-5.fc39.s390x.rpm      5.8 MB/s | 653 kB     00:00    
(61/160): gcc-13.2.1-6.fc40.s390x.rpm            36 MB/s |  28 MB     00:00    
(62/160): guile22-2.2.7-9.fc39.s390x.rpm         31 MB/s | 6.5 MB     00:00    
(63/160): hdf5-1.12.1-15.fc40.s390x.rpm          16 MB/s | 2.4 MB     00:00    
(64/160): hdf5-devel-1.12.1-15.fc40.s390x.rpm    13 MB/s | 1.3 MB     00:00    
(65/160): htslib-1.15.1-3.fc39.s390x.rpm        3.6 MB/s | 533 kB     00:00    
(66/160): htslib-devel-1.15.1-3.fc39.s390x.rpm  850 kB/s | 105 kB     00:00    
(67/160): kernel-headers-6.7.0-0.rc5.41.fc40.s3  16 MB/s | 1.6 MB     00:00    
(68/160): libaec-1.0.6-5.fc39.s390x.rpm         633 kB/s |  45 kB     00:00    
(69/160): libaec-devel-1.0.6-5.fc39.s390x.rpm   147 kB/s |  12 kB     00:00    
(70/160): libasan-13.2.1-6.fc40.s390x.rpm       6.8 MB/s | 510 kB     00:00    
(71/160): libatomic-13.2.1-6.fc40.s390x.rpm     620 kB/s |  37 kB     00:00    
(72/160): libb2-0.98.1-9.fc39.s390x.rpm         413 kB/s |  27 kB     00:00    
(73/160): libgfortran-13.2.1-6.fc40.s390x.rpm   7.5 MB/s | 580 kB     00:00    
(74/160): libicu-devel-73.2-2.fc39.s390x.rpm     10 MB/s | 925 kB     00:00    
(75/160): libmpc-1.3.1-3.fc39.s390x.rpm         1.1 MB/s |  73 kB     00:00    
(76/160): libtool-ltdl-2.4.7-8.fc40.s390x.rpm   585 kB/s |  37 kB     00:00    
(77/160): libstdc++-devel-13.2.1-6.fc40.s390x.r  19 MB/s | 2.6 MB     00:00    
(78/160): libubsan-13.2.1-6.fc40.s390x.rpm      3.2 MB/s | 222 kB     00:00    
(79/160): libxcrypt-devel-4.4.36-2.fc39.s390x.r 455 kB/s |  30 kB     00:00    
(80/160): libicu-73.2-2.fc39.s390x.rpm           32 MB/s |  11 MB     00:00    
(81/160): m4-1.4.19-7.fc40.s390x.rpm            4.4 MB/s | 313 kB     00:00    
(82/160): make-4.4.1-2.fc39.s390x.rpm           7.7 MB/s | 605 kB     00:00    
(83/160): mpdecimal-2.5.1-7.fc39.s390x.rpm      1.5 MB/s | 100 kB     00:00    
(84/160): metis-5.1.0.3-2.fc39.s390x.rpm        6.2 MB/s | 603 kB     00:00    
(85/160): ncurses-6.4-8.20231001.fc40.s390x.rpm 5.7 MB/s | 427 kB     00:00    
(86/160): openblas-0.3.25-1.fc40.s390x.rpm      591 kB/s |  38 kB     00:00    
(87/160): perl-AutoLoader-5.74-503.fc40.noarch. 335 kB/s |  21 kB     00:00    
(88/160): openblas-openmp-0.3.25-1.fc40.s390x.r  28 MB/s | 4.3 MB     00:00    
(89/160): perl-B-1.88-503.fc40.s390x.rpm        2.6 MB/s | 178 kB     00:00    
(90/160): perl-Carp-1.54-500.fc39.noarch.rpm    483 kB/s |  29 kB     00:00    
(91/160): perl-Class-Struct-0.68-503.fc40.noarc 352 kB/s |  22 kB     00:00    
(92/160): openblas-openmp64-0.3.25-1.fc40.s390x  18 MB/s | 4.2 MB     00:00    
(93/160): perl-Data-Dumper-2.188-501.fc39.s390x 966 kB/s |  57 kB     00:00    
(94/160): perl-Digest-1.20-500.fc39.noarch.rpm  390 kB/s |  25 kB     00:00    
(95/160): perl-DynaLoader-1.54-503.fc40.s390x.r 432 kB/s |  26 kB     00:00    
(96/160): perl-Digest-MD5-2.58-501.fc40.s390x.r 511 kB/s |  35 kB     00:00    
(97/160): perl-Encode-3.20-501.fc40.s390x.rpm    17 MB/s | 1.7 MB     00:00    
(98/160): perl-Errno-1.37-503.fc40.s390x.rpm    251 kB/s |  15 kB     00:00    
(99/160): perl-Exporter-5.77-500.fc39.noarch.rp 461 kB/s |  31 kB     00:00    
(100/160): perl-Fedora-VSP-0.001-32.fc39.noarch 394 kB/s |  23 kB     00:00    
(101/160): perl-Fcntl-1.15-503.fc40.s390x.rpm   327 kB/s |  21 kB     00:00    
(102/160): perl-File-Basename-2.86-503.fc40.noa 239 kB/s |  17 kB     00:00    
(103/160): perl-File-Compare-1.100.700-503.fc40 230 kB/s |  13 kB     00:00    
(104/160): perl-File-Copy-2.41-503.fc40.noarch. 321 kB/s |  20 kB     00:00    
(105/160): perl-File-Find-1.43-503.fc40.noarch. 371 kB/s |  26 kB     00:00    
(106/160): perl-File-Path-2.18-501.fc40.noarch. 594 kB/s |  35 kB     00:00    
(107/160): perl-File-Temp-0.231.100-501.fc40.no 919 kB/s |  59 kB     00:00    
(108/160): perl-File-stat-1.13-503.fc40.noarch. 267 kB/s |  17 kB     00:00    
(109/160): perl-FileHandle-2.05-503.fc40.noarch 269 kB/s |  16 kB     00:00    
(110/160): perl-Getopt-Long-2.57-1.fc40.noarch. 990 kB/s |  63 kB     00:00    
(111/160): perl-Getopt-Std-1.13-503.fc40.noarch 242 kB/s |  16 kB     00:00    
(112/160): perl-HTTP-Tiny-0.088-3.fc39.noarch.r 940 kB/s |  56 kB     00:00    
(113/160): perl-IO-1.52-503.fc40.s390x.rpm      1.2 MB/s |  82 kB     00:00    
(114/160): perl-IO-Socket-IP-0.42-1.fc39.noarch 619 kB/s |  42 kB     00:00    
(115/160): perl-IO-Socket-SSL-2.084-1.fc40.noar 3.5 MB/s | 225 kB     00:00    
(116/160): perl-IPC-Open3-1.22-503.fc40.noarch. 349 kB/s |  22 kB     00:00    
(117/160): perl-MIME-Base64-3.16-501.fc40.s390x 450 kB/s |  30 kB     00:00    
(118/160): perl-Mozilla-CA-20230821-1.fc40.noar 230 kB/s |  13 kB     00:00    
(119/160): perl-Net-SSLeay-1.92-10.fc39.s390x.r 5.0 MB/s | 363 kB     00:00    
(120/160): perl-PathTools-3.89-500.fc39.s390x.r 1.4 MB/s |  87 kB     00:00    
(121/160): perl-POSIX-2.13-503.fc40.s390x.rpm   1.3 MB/s |  98 kB     00:00    
(122/160): perl-Pod-Escapes-1.07-501.fc40.noarc 300 kB/s |  19 kB     00:00    
(123/160): perl-Pod-Perldoc-3.28.01-501.fc39.no 1.4 MB/s |  86 kB     00:00    
(124/160): perl-Pod-Simple-3.45-4.fc39.noarch.r 2.6 MB/s | 218 kB     00:00    
(125/160): perl-Pod-Usage-2.03-500.fc39.noarch. 617 kB/s |  39 kB     00:00    
(126/160): perl-Scalar-List-Utils-1.63-500.fc39 1.2 MB/s |  74 kB     00:00    
(127/160): perl-SelectSaver-1.02-503.fc40.noarc 184 kB/s |  12 kB     00:00    
(128/160): perl-Socket-2.037-3.fc39.s390x.rpm   864 kB/s |  55 kB     00:00    
(129/160): perl-Storable-3.32-500.fc39.s390x.rp 1.6 MB/s | 100 kB     00:00    
(130/160): perl-Symbol-1.09-503.fc40.noarch.rpm 222 kB/s |  14 kB     00:00    
(131/160): perl-Term-ANSIColor-5.01-502.fc40.no 746 kB/s |  47 kB     00:00    
(132/160): perl-Term-Cap-1.18-500.fc39.noarch.r 372 kB/s |  22 kB     00:00    
(133/160): perl-Text-ParseWords-3.31-500.fc39.n 234 kB/s |  16 kB     00:00    
(134/160): perl-Thread-Queue-3.14-501.fc40.noar 359 kB/s |  21 kB     00:00    
(135/160): perl-Text-Tabs+Wrap-2023.0511-3.fc39 335 kB/s |  22 kB     00:00    
(136/160): perl-Time-Local-1.350-3.fc39.noarch. 513 kB/s |  34 kB     00:00    
(137/160): perl-URI-5.21-1.fc40.noarch.rpm      2.0 MB/s | 125 kB     00:00    
(138/160): perl-base-2.27-503.fc40.noarch.rpm   260 kB/s |  16 kB     00:00    
(139/160): perl-generators-1.16-3.fc39.noarch.r 274 kB/s |  16 kB     00:00    
(140/160): perl-constant-1.33-501.fc39.noarch.r 337 kB/s |  22 kB     00:00    
(141/160): perl-if-0.61.000-503.fc40.noarch.rpm 225 kB/s |  14 kB     00:00    
(142/160): perl-interpreter-5.38.2-503.fc40.s39 1.2 MB/s |  72 kB     00:00    
(143/160): perl-libnet-3.15-501.fc39.noarch.rpm 1.7 MB/s | 129 kB     00:00    
(144/160): perl-locale-1.10-503.fc40.noarch.rpm 238 kB/s |  14 kB     00:00    
(145/160): perl-libs-5.38.2-503.fc40.s390x.rpm   21 MB/s | 2.5 MB     00:00    
(146/160): perl-macros-5.38.2-503.fc40.noarch.r 194 kB/s |  13 kB     00:00    
(147/160): perl-mro-1.28-503.fc40.s390x.rpm     496 kB/s |  29 kB     00:00    
(148/160): perl-overload-1.37-503.fc40.noarch.r 717 kB/s |  46 kB     00:00    
(149/160): perl-overloading-0.02-503.fc40.noarc 202 kB/s |  13 kB     00:00    
(150/160): perl-parent-0.241-500.fc39.noarch.rp 242 kB/s |  14 kB     00:00    
(151/160): perl-podlators-5.01-500.fc39.noarch. 1.9 MB/s | 125 kB     00:00    
(152/160): perl-threads-2.36-500.fc39.s390x.rpm 846 kB/s |  58 kB     00:00    
(153/160): perl-threads-shared-1.68-500.fc39.s3 765 kB/s |  45 kB     00:00    
(154/160): perl-vars-1.05-503.fc40.noarch.rpm   209 kB/s |  13 kB     00:00    
(155/160): python3-3.12.1-1.fc40.s390x.rpm      447 kB/s |  26 kB     00:00    
(156/160): python-pip-wheel-23.2.1-1.fc39.noarc 8.2 MB/s | 1.5 MB     00:00    
(157/160): tzdata-2023c-4.fc40.noarch.rpm       6.0 MB/s | 717 kB     00:00    
(158/160): python3-numpy-1.26.0-2.fc40.s390x.rp  28 MB/s | 7.1 MB     00:00    
(159/160): python3-libs-3.12.1-1.fc40.s390x.rpm  29 MB/s | 9.2 MB     00:00    
(160/160): zlib-devel-1.2.13-5.fc40.s390x.rpm   659 kB/s |  44 kB     00:00    
--------------------------------------------------------------------------------
Total                                            15 MB/s | 154 MB     00:10     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : boost-system-1.83.0-0.fc40.s390x                     1/160 
  Installing       : libgfortran-13.2.1-6.fc40.s390x                      2/160 
  Installing       : boost-chrono-1.83.0-0.fc40.s390x                     3/160 
  Installing       : boost-thread-1.83.0-0.fc40.s390x                     4/160 
  Installing       : libicu-73.2-2.fc39.s390x                             5/160 
  Installing       : libmpc-1.3.1-3.fc39.s390x                            6/160 
  Installing       : boost-regex-1.83.0-0.fc40.s390x                      7/160 
  Installing       : boost-context-1.83.0-0.fc40.s390x                    8/160 
  Installing       : boost-atomic-1.83.0-0.fc40.s390x                     9/160 
  Installing       : boost-filesystem-1.83.0-0.fc40.s390x                10/160 
  Installing       : openblas-0.3.25-1.fc40.s390x                        11/160 
  Installing       : libstdc++-devel-13.2.1-6.fc40.s390x                 12/160 
  Installing       : libaec-1.0.6-5.fc39.s390x                           13/160 
  Installing       : hdf5-1.12.1-15.fc40.s390x                           14/160 
  Installing       : boost-date-time-1.83.0-0.fc40.s390x                 15/160 
  Installing       : boost-container-1.83.0-0.fc40.s390x                 16/160 
  Installing       : boost-json-1.83.0-0.fc40.s390x                      17/160 
  Installing       : boost-wave-1.83.0-0.fc40.s390x                      18/160 
  Installing       : libaec-devel-1.0.6-5.fc39.s390x                     19/160 
  Installing       : openblas-openmp-0.3.25-1.fc40.s390x                 20/160 
  Installing       : openblas-openmp64-0.3.25-1.fc40.s390x               21/160 
  Installing       : flexiblas-netlib-3.3.1-5.fc39.s390x                 22/160 
  Installing       : flexiblas-openblas-openmp-3.3.1-5.fc39.s390x        23/160 
  Installing       : flexiblas-netlib64-3.3.1-5.fc39.s390x               24/160 
  Installing       : flexiblas-openblas-openmp64-3.3.1-5.fc39.s390x      25/160 
  Installing       : flexiblas-3.3.1-5.fc39.s390x                        26/160 
  Installing       : arpack-3.9.1-1.fc40.s390x                           27/160 
  Installing       : arpack-devel-3.9.1-1.fc40.s390x                     28/160 
  Installing       : flexiblas-devel-3.3.1-5.fc39.s390x                  29/160 
  Installing       : boost-fiber-1.83.0-0.fc40.s390x                     30/160 
  Installing       : boost-log-1.83.0-0.fc40.s390x                       31/160 
  Installing       : boost-coroutine-1.83.0-0.fc40.s390x                 32/160 
  Installing       : boost-graph-1.83.0-0.fc40.s390x                     33/160 
  Installing       : cpp-13.2.1-6.fc40.s390x                             34/160 
  Installing       : boost-locale-1.83.0-0.fc40.s390x                    35/160 
  Installing       : libicu-devel-73.2-2.fc39.s390x                      36/160 
  Installing       : boost-type_erasure-1.83.0-0.fc40.s390x              37/160 
  Installing       : boost-timer-1.83.0-0.fc40.s390x                     38/160 
  Installing       : zlib-devel-1.2.13-5.fc40.s390x                      39/160 
  Installing       : tzdata-2023c-4.fc40.noarch                          40/160 
  Installing       : python-pip-wheel-23.2.1-1.fc39.noarch               41/160 
  Installing       : ncurses-6.4-8.20231001.fc40.s390x                   42/160 
  Installing       : mpdecimal-2.5.1-7.fc39.s390x                        43/160 
  Installing       : metis-5.1.0.3-2.fc39.s390x                          44/160 
  Installing       : SuperLU-6.0.1-1.fc40.s390x                          45/160 
  Installing       : armadillo-10.8.2-5.fc39.s390x                       46/160 
  Installing       : m4-1.4.19-7.fc40.s390x                              47/160 
  Installing       : libubsan-13.2.1-6.fc40.s390x                        48/160 
  Installing       : libtool-ltdl-2.4.7-8.fc40.s390x                     49/160 
  Installing       : libb2-0.98.1-9.fc39.s390x                           50/160 
  Installing       : libatomic-13.2.1-6.fc40.s390x                       51/160 
  Installing       : libasan-13.2.1-6.fc40.s390x                         52/160 
  Installing       : kernel-headers-6.7.0-0.rc5.41.fc40.s390x            53/160 
  Installing       : htslib-1.15.1-3.fc39.s390x                          54/160 
  Installing       : gsl-2.7.1-5.fc39.s390x                              55/160 
  Running scriptlet: groff-base-1.23.0-3.fc40.s390x                      56/160 
  Installing       : groff-base-1.23.0-3.fc40.s390x                      56/160 
  Running scriptlet: groff-base-1.23.0-3.fc40.s390x                      56/160 
  Installing       : perl-Digest-1.20-500.fc39.noarch                    57/160 
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  Installing       : perl-B-1.88-503.fc40.s390x                          59/160 
  Installing       : perl-FileHandle-2.05-503.fc40.noarch                60/160 
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  Installing       : perl-libnet-3.15-501.fc39.noarch                    62/160 
  Installing       : perl-AutoLoader-5.74-503.fc40.noarch                63/160 
  Installing       : perl-URI-5.21-1.fc40.noarch                         64/160 
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  Installing       : perl-if-0.61.000-503.fc40.noarch                    67/160 
  Installing       : perl-locale-1.10-503.fc40.noarch                    68/160 
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  Installing       : perl-File-Path-2.18-501.fc40.noarch                 71/160 
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  Installing       : perl-Pod-Escapes-1:1.07-501.fc40.noarch             74/160 
  Installing       : perl-Class-Struct-0.68-503.fc40.noarch              75/160 
  Installing       : perl-Term-ANSIColor-5.01-502.fc40.noarch            76/160 
  Installing       : perl-POSIX-2.13-503.fc40.s390x                      77/160 
  Installing       : perl-IPC-Open3-1.22-503.fc40.noarch                 78/160 
  Installing       : perl-File-Temp-1:0.231.100-501.fc40.noarch          79/160 
  Installing       : perl-HTTP-Tiny-0.088-3.fc39.noarch                  80/160 
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  Installing       : perl-SelectSaver-1.02-503.fc40.noarch               84/160 
  Installing       : perl-Symbol-1.09-503.fc40.noarch                    85/160 
  Installing       : perl-File-stat-1.13-503.fc40.noarch                 86/160 
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  Installing       : perl-Text-ParseWords-3.31-500.fc39.noarch           90/160 
  Installing       : perl-base-2.27-503.fc40.noarch                      91/160 
  Installing       : perl-mro-1.28-503.fc40.s390x                        92/160 
  Installing       : perl-IO-1.52-503.fc40.s390x                         93/160 
  Installing       : perl-overloading-0.02-503.fc40.noarch               94/160 
  Installing       : perl-Pod-Usage-4:2.03-500.fc39.noarch               95/160 
  Installing       : perl-Errno-1.37-503.fc40.s390x                      96/160 
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  Installing       : perl-Getopt-Std-1.13-503.fc40.noarch                98/160 
  Installing       : perl-MIME-Base64-3.16-501.fc40.s390x                99/160 
  Installing       : perl-Scalar-List-Utils-5:1.63-500.fc39.s390x       100/160 
  Installing       : perl-constant-1.33-501.fc39.noarch                 101/160 
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  Installing       : perl-overload-1.37-503.fc40.noarch                 103/160 
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  Installing       : perl-vars-1.05-503.fc40.noarch                     105/160 
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  Installing       : perl-Encode-4:3.20-501.fc40.s390x                  111/160 
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  Installing       : perl-File-Copy-2.41-503.fc40.noarch                120/160 
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  Installing       : glibc-headers-s390-2.38.9000-27.fc40.noarch        122/160 
  Installing       : libxcrypt-devel-4.4.36-2.fc39.s390x                123/160 
  Installing       : glibc-devel-2.38.9000-27.fc40.s390x                124/160 
  Installing       : gc-8.2.2-4.fc39.s390x                              125/160 
  Installing       : guile22-2.2.7-9.fc39.s390x                         126/160 
  Installing       : make-1:4.4.1-2.fc39.s390x                          127/160 
  Installing       : gcc-13.2.1-6.fc40.s390x                            128/160 
  Running scriptlet: gcc-13.2.1-6.fc40.s390x                            128/160 
  Installing       : gcc-gfortran-13.2.1-6.fc40.s390x                   129/160 
  Installing       : hdf5-devel-1.12.1-15.fc40.s390x                    130/160 
  Installing       : expat-2.5.0-3.fc39.s390x                           131/160 
  Installing       : python3-3.12.1-1.fc40.s390x                        132/160 
  Installing       : python3-libs-3.12.1-1.fc40.s390x                   133/160 
  Installing       : boost-python3-1.83.0-0.fc40.s390x                  134/160 
  Installing       : python3-numpy-1:1.26.0-2.fc40.s390x                135/160 
  Installing       : boost-numpy3-1.83.0-0.fc40.s390x                   136/160 
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  Installing       : autoconf-2.71-7.fc40.noarch                        138/160 
  Installing       : automake-1.16.5-14.fc40.noarch                     139/160 
  Installing       : cmake-filesystem-3.27.7-1.fc40.s390x               140/160 
  Installing       : SuperLU-devel-6.0.1-1.fc40.s390x                   141/160 
  Installing       : annobin-docs-12.33-1.fc40.noarch                   142/160 
  Installing       : boost-test-1.83.0-0.fc40.s390x                     143/160 
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  Installing       : boost-serialization-1.83.0-0.fc40.s390x            145/160 
  Installing       : boost-random-1.83.0-0.fc40.s390x                   146/160 
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  Installing       : boost-nowide-1.83.0-0.fc40.s390x                   148/160 
  Installing       : boost-math-1.83.0-0.fc40.s390x                     149/160 
  Installing       : boost-iostreams-1.83.0-0.fc40.s390x                150/160 
  Installing       : boost-contract-1.83.0-0.fc40.s390x                 151/160 
  Installing       : boost-1.83.0-0.fc40.s390x                          152/160 
  Installing       : boost-devel-1.83.0-0.fc40.s390x                    153/160 
  Installing       : annobin-plugin-gcc-12.33-1.fc40.s390x              154/160 
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  Installing       : armadillo-devel-10.8.2-5.fc39.s390x                155/160 
  Installing       : gsl-devel-2.7.1-5.fc39.s390x                       156/160 
  Installing       : gcc-c++-13.2.1-6.fc40.s390x                        157/160 
  Installing       : gcc-plugin-annobin-13.2.1-6.fc40.s390x             158/160 
  Running scriptlet: gcc-plugin-annobin-13.2.1-6.fc40.s390x             158/160 
  Installing       : perl-generators-1.16-3.fc39.noarch                 159/160 
  Installing       : htslib-devel-1.15.1-3.fc39.s390x                   160/160 
  Running scriptlet: htslib-devel-1.15.1-3.fc39.s390x                   160/160 

Installed:
  SuperLU-6.0.1-1.fc40.s390x                                                    
  SuperLU-devel-6.0.1-1.fc40.s390x                                              
  annobin-docs-12.33-1.fc40.noarch                                              
  annobin-plugin-gcc-12.33-1.fc40.s390x                                         
  armadillo-10.8.2-5.fc39.s390x                                                 
  armadillo-devel-10.8.2-5.fc39.s390x                                           
  arpack-3.9.1-1.fc40.s390x                                                     
  arpack-devel-3.9.1-1.fc40.s390x                                               
  autoconf-2.71-7.fc40.noarch                                                   
  automake-1.16.5-14.fc40.noarch                                                
  boost-1.83.0-0.fc40.s390x                                                     
  boost-atomic-1.83.0-0.fc40.s390x                                              
  boost-chrono-1.83.0-0.fc40.s390x                                              
  boost-container-1.83.0-0.fc40.s390x                                           
  boost-context-1.83.0-0.fc40.s390x                                             
  boost-contract-1.83.0-0.fc40.s390x                                            
  boost-coroutine-1.83.0-0.fc40.s390x                                           
  boost-date-time-1.83.0-0.fc40.s390x                                           
  boost-devel-1.83.0-0.fc40.s390x                                               
  boost-fiber-1.83.0-0.fc40.s390x                                               
  boost-filesystem-1.83.0-0.fc40.s390x                                          
  boost-graph-1.83.0-0.fc40.s390x                                               
  boost-iostreams-1.83.0-0.fc40.s390x                                           
  boost-json-1.83.0-0.fc40.s390x                                                
  boost-locale-1.83.0-0.fc40.s390x                                              
  boost-log-1.83.0-0.fc40.s390x                                                 
  boost-math-1.83.0-0.fc40.s390x                                                
  boost-nowide-1.83.0-0.fc40.s390x                                              
  boost-numpy3-1.83.0-0.fc40.s390x                                              
  boost-program-options-1.83.0-0.fc40.s390x                                     
  boost-python3-1.83.0-0.fc40.s390x                                             
  boost-random-1.83.0-0.fc40.s390x                                              
  boost-regex-1.83.0-0.fc40.s390x                                               
  boost-serialization-1.83.0-0.fc40.s390x                                       
  boost-stacktrace-1.83.0-0.fc40.s390x                                          
  boost-system-1.83.0-0.fc40.s390x                                              
  boost-test-1.83.0-0.fc40.s390x                                                
  boost-thread-1.83.0-0.fc40.s390x                                              
  boost-timer-1.83.0-0.fc40.s390x                                               
  boost-type_erasure-1.83.0-0.fc40.s390x                                        
  boost-wave-1.83.0-0.fc40.s390x                                                
  cmake-filesystem-3.27.7-1.fc40.s390x                                          
  cpp-13.2.1-6.fc40.s390x                                                       
  emacs-filesystem-1:29.1-14.fc40.noarch                                        
  expat-2.5.0-3.fc39.s390x                                                      
  flexiblas-3.3.1-5.fc39.s390x                                                  
  flexiblas-devel-3.3.1-5.fc39.s390x                                            
  flexiblas-netlib-3.3.1-5.fc39.s390x                                           
  flexiblas-netlib64-3.3.1-5.fc39.s390x                                         
  flexiblas-openblas-openmp-3.3.1-5.fc39.s390x                                  
  flexiblas-openblas-openmp64-3.3.1-5.fc39.s390x                                
  gc-8.2.2-4.fc39.s390x                                                         
  gcc-13.2.1-6.fc40.s390x                                                       
  gcc-c++-13.2.1-6.fc40.s390x                                                   
  gcc-gfortran-13.2.1-6.fc40.s390x                                              
  gcc-plugin-annobin-13.2.1-6.fc40.s390x                                        
  glibc-devel-2.38.9000-27.fc40.s390x                                           
  glibc-headers-s390-2.38.9000-27.fc40.noarch                                   
  groff-base-1.23.0-3.fc40.s390x                                                
  gsl-2.7.1-5.fc39.s390x                                                        
  gsl-devel-2.7.1-5.fc39.s390x                                                  
  guile22-2.2.7-9.fc39.s390x                                                    
  hdf5-1.12.1-15.fc40.s390x                                                     
  hdf5-devel-1.12.1-15.fc40.s390x                                               
  htslib-1.15.1-3.fc39.s390x                                                    
  htslib-devel-1.15.1-3.fc39.s390x                                              
  kernel-headers-6.7.0-0.rc5.41.fc40.s390x                                      
  libaec-1.0.6-5.fc39.s390x                                                     
  libaec-devel-1.0.6-5.fc39.s390x                                               
  libasan-13.2.1-6.fc40.s390x                                                   
  libatomic-13.2.1-6.fc40.s390x                                                 
  libb2-0.98.1-9.fc39.s390x                                                     
  libgfortran-13.2.1-6.fc40.s390x                                               
  libicu-73.2-2.fc39.s390x                                                      
  libicu-devel-73.2-2.fc39.s390x                                                
  libmpc-1.3.1-3.fc39.s390x                                                     
  libstdc++-devel-13.2.1-6.fc40.s390x                                           
  libtool-ltdl-2.4.7-8.fc40.s390x                                               
  libubsan-13.2.1-6.fc40.s390x                                                  
  libxcrypt-devel-4.4.36-2.fc39.s390x                                           
  m4-1.4.19-7.fc40.s390x                                                        
  make-1:4.4.1-2.fc39.s390x                                                     
  metis-5.1.0.3-2.fc39.s390x                                                    
  mpdecimal-2.5.1-7.fc39.s390x                                                  
  ncurses-6.4-8.20231001.fc40.s390x                                             
  openblas-0.3.25-1.fc40.s390x                                                  
  openblas-openmp-0.3.25-1.fc40.s390x                                           
  openblas-openmp64-0.3.25-1.fc40.s390x                                         
  perl-AutoLoader-5.74-503.fc40.noarch                                          
  perl-B-1.88-503.fc40.s390x                                                    
  perl-Carp-1.54-500.fc39.noarch                                                
  perl-Class-Struct-0.68-503.fc40.noarch                                        
  perl-Data-Dumper-2.188-501.fc39.s390x                                         
  perl-Digest-1.20-500.fc39.noarch                                              
  perl-Digest-MD5-2.58-501.fc40.s390x                                           
  perl-DynaLoader-1.54-503.fc40.s390x                                           
  perl-Encode-4:3.20-501.fc40.s390x                                             
  perl-Errno-1.37-503.fc40.s390x                                                
  perl-Exporter-5.77-500.fc39.noarch                                            
  perl-Fcntl-1.15-503.fc40.s390x                                                
  perl-Fedora-VSP-0.001-32.fc39.noarch                                          
  perl-File-Basename-2.86-503.fc40.noarch                                       
  perl-File-Compare-1.100.700-503.fc40.noarch                                   
  perl-File-Copy-2.41-503.fc40.noarch                                           
  perl-File-Find-1.43-503.fc40.noarch                                           
  perl-File-Path-2.18-501.fc40.noarch                                           
  perl-File-Temp-1:0.231.100-501.fc40.noarch                                    
  perl-File-stat-1.13-503.fc40.noarch                                           
  perl-FileHandle-2.05-503.fc40.noarch                                          
  perl-Getopt-Long-1:2.57-1.fc40.noarch                                         
  perl-Getopt-Std-1.13-503.fc40.noarch                                          
  perl-HTTP-Tiny-0.088-3.fc39.noarch                                            
  perl-IO-1.52-503.fc40.s390x                                                   
  perl-IO-Socket-IP-0.42-1.fc39.noarch                                          
  perl-IO-Socket-SSL-2.084-1.fc40.noarch                                        
  perl-IPC-Open3-1.22-503.fc40.noarch                                           
  perl-MIME-Base64-3.16-501.fc40.s390x                                          
  perl-Mozilla-CA-20230821-1.fc40.noarch                                        
  perl-Net-SSLeay-1.92-10.fc39.s390x                                            
  perl-POSIX-2.13-503.fc40.s390x                                                
  perl-PathTools-3.89-500.fc39.s390x                                            
  perl-Pod-Escapes-1:1.07-501.fc40.noarch                                       
  perl-Pod-Perldoc-3.28.01-501.fc39.noarch                                      
  perl-Pod-Simple-1:3.45-4.fc39.noarch                                          
  perl-Pod-Usage-4:2.03-500.fc39.noarch                                         
  perl-Scalar-List-Utils-5:1.63-500.fc39.s390x                                  
  perl-SelectSaver-1.02-503.fc40.noarch                                         
  perl-Socket-4:2.037-3.fc39.s390x                                              
  perl-Storable-1:3.32-500.fc39.s390x                                           
  perl-Symbol-1.09-503.fc40.noarch                                              
  perl-Term-ANSIColor-5.01-502.fc40.noarch                                      
  perl-Term-Cap-1.18-500.fc39.noarch                                            
  perl-Text-ParseWords-3.31-500.fc39.noarch                                     
  perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch                                   
  perl-Thread-Queue-3.14-501.fc40.noarch                                        
  perl-Time-Local-2:1.350-3.fc39.noarch                                         
  perl-URI-5.21-1.fc40.noarch                                                   
  perl-base-2.27-503.fc40.noarch                                                
  perl-constant-1.33-501.fc39.noarch                                            
  perl-generators-1.16-3.fc39.noarch                                            
  perl-if-0.61.000-503.fc40.noarch                                              
  perl-interpreter-4:5.38.2-503.fc40.s390x                                      
  perl-libnet-3.15-501.fc39.noarch                                              
  perl-libs-4:5.38.2-503.fc40.s390x                                             
  perl-locale-1.10-503.fc40.noarch                                              
  perl-macros-4:5.38.2-503.fc40.noarch                                          
  perl-mro-1.28-503.fc40.s390x                                                  
  perl-overload-1.37-503.fc40.noarch                                            
  perl-overloading-0.02-503.fc40.noarch                                         
  perl-parent-1:0.241-500.fc39.noarch                                           
  perl-podlators-1:5.01-500.fc39.noarch                                         
  perl-threads-1:2.36-500.fc39.s390x                                            
  perl-threads-shared-1.68-500.fc39.s390x                                       
  perl-vars-1.05-503.fc40.noarch                                                
  python-pip-wheel-23.2.1-1.fc39.noarch                                         
  python3-3.12.1-1.fc40.s390x                                                   
  python3-libs-3.12.1-1.fc40.s390x                                              
  python3-numpy-1:1.26.0-2.fc40.s390x                                           
  tzdata-2023c-4.fc40.noarch                                                    
  zlib-devel-1.2.13-5.fc40.s390x                                                

Complete!
Finish: build setup for mmseq-1.0.11-16.fc40.src.rpm
Start: rpmbuild mmseq-1.0.11-16.fc40.src.rpm
warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1689811200
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.2bcudx
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf mmseq-1.0.11
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/1.0.11.zip
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd mmseq-1.0.11
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #2 (mmseq-zlib.patch):
+ echo 'Patch #2 (mmseq-zlib.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .mmseq-zlib.patch --fuzz=0
patching file src/Makefile
+ rm -f bin/offsetGTF-linux bin/postdiff-linux
+ sed -e s/-lblas/-lflexiblas/g -e s/-llapack/-lflexiblas/g -i src/Makefile
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.rEqI6g
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ cd src
+ make -j2 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection'
g++ -O3 -c sokal.cc
g++ -fopenmp -O3 -c uh.cpp 
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 hitsio.cpp hitsio.hpp -c hitsio.cpp
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection    -c -o fasta.o fasta.c
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -O3 offsetGTF.cpp -o ../bin/offsetGTF
offsetGTF.cpp: In function ‘int main(int, char**)’:
offsetGTF.cpp:115:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  115 |       while(gff_ind < gff_positions[chrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:117:57: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  117 |               pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:114:11: warning: unused variable ‘curoff’ [-Wunused-variable]
  114 |       int curoff=offset;
      |           ^~~~~~
offsetGTF.cpp:150:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  150 |       while(gff_ind < gff_positions[prevchrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:163:53: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  163 |           pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:177:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  177 |     while(gff_ind < gff_positions[chrom].size() && gff_positions[chrom][gff_ind] <= pos) {
      |           ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:235:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  235 |     for(int i=5; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
offsetGTF.cpp:237:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  237 |       if(i < tokens.size()-1) {
      |          ~~^~~~~~~~~~~~~~~~~
offsetGTF.cpp:108:7: warning: unused variable ‘gff_pos’ [-Wunused-variable]
  108 |   int gff_pos= -1;
      |       ^~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -O3 t2g_hits.cpp -o ../bin/t2g_hits
t2g_hits.cpp: In function ‘int main(int, char**)’:
t2g_hits.cpp:90:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   90 |         for(int i=2; i < tokens.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -DARMA_64BIT_WORD -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 uh.o sokal.o mmcollapse.cpp -o ../bin/mmcollapse -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmcollapse.cpp: In function ‘void get_unidentifiable_transcripts(std::string, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, bool>&)’:
mmcollapse.cpp:158:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  158 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:213:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  213 |     for(int i=0; i < tokens2.size(); i++) isIdent[tokens2[i]]=1;
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  259 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
mmcollapse.cpp: In function ‘void collapse(arma::cube&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<int, std::allocator<int> >)’:
mmcollapse.cpp:400:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  400 |   for(int s=0; s < R.n_slices; s++) {
      |                ~~^~~~~~~~~~~~
mmcollapse.cpp:401:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  401 |     for(int t=0; t < candidates.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:402:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  402 |       for(int j=1; j < indexes.size(); j++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:414:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  414 |     for(int j=1; j < indexes.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:417:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  417 |       for(int i=0; i < R.n_cols; i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:426:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  426 |   for(int i=0; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:431:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  431 |   for(int i=1; i < tset.size(); i++) {
      |                ~~^~~~~~~~~~~~~
mmcollapse.cpp:437:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  437 |   for(int i=1; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘std::map<int, int> join_traces(arma::mat&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >)’:
mmcollapse.cpp:445:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  445 |   for(int t=0; t < allnames.size(); t++) tmap[allnames[t]]=t;
      |                ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:452:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  452 |   for(int c=0; c < candidates.size(); c++) {
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:456:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  456 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:464:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  464 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:469:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  469 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:476:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  476 |   for(int i=0; i < toshed.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void mean_corrs(const arma::cube&, const arma::umat&, arma::mat&, arma::mat&, std::vector<int, std::allocator<int> >, std::vector<int, std::allocator<int> >, double)’:
mmcollapse.cpp:486:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  486 |     for(int v= 0; v < R.n_rows; v++) {
      |                   ~~^~~~~~~~~~
mmcollapse.cpp:492:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare]
  492 |       for(int i=0; i < u.size(); i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp: In function ‘void get_corrs(arma::cube&, arma::mat&, const std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&)’:
mmcollapse.cpp:519:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  519 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:543:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  543 |         for(int t=0; t < tokens.size(); t++) {
      |                      ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘int main(int, char**)’:
mmcollapse.cpp:632:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  632 |   for(int i=1; i < basenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:691:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  691 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:707:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  707 |   for(int i=0; i < candidates.size(); i++) ts.push_back(i);
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:732:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  732 |     for(int i=0 ;i < maxcorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:738:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  738 |     for(int i=0 ;i < mincorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:802:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  802 |         for(int i=0 ;i < maxcorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:808:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  808 |         for(int i=0 ;i < mincorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:827:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  827 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:852:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  852 |       for(int t=0; t < tokens.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:882:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  882 |       for(int t=0; t < tokens2.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:934:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  934 |     for(int t=0; t < M.n_cols; t++) {
      |                  ~~^~~~~~~~~~
mmcollapse.cpp:963:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  963 |     for(int i=1; i < tokens2.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:976:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  976 |       if(MM.size1() < i+1 ) factor1=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:977:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  977 |       if(MM.size2() < j+1 ) factor2=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:1010:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1010 |     for(int t=0; t < ids.size(); t++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1083:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1083 |     for(int i=0; i < ids.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1092:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1092 |     for(int v = 0; v < M.n_cols; v++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:840:9: warning: unused variable ‘isident’ [-Wunused-variable]
  840 |     int isident=0;
      |         ^~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O2 bms.cpp bms.hpp -c bms.cpp
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 sokal.o uh.o hitsio.o mmseq.cpp -o ../bin/mmseq -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmseq.cpp: In function ‘std::vector<double> meanvar(std::vector<double>, double, double)’:
mmseq.cpp:130:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  130 |   for(int i=0;i < v.size(); i++) {
      |               ~~^~~~~~~~~~
mmseq.cpp: In function ‘int main(int, char**)’:
mmseq.cpp:244:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  244 |       for(int i=0; i < tokens.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~
mmseq.cpp:423:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  423 |       if(M.size1() < m ) factor1=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:424:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  424 |       if(M.size2() < n ) factor2=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:594:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  594 |   for(unsigned t=0; t < n; t++)  {
      |                     ~~^~~
mmseq.cpp:736:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  736 |     for(unsigned t=0; t < n; t++)
      |                       ~~^~~
mmseq.cpp:765:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  765 |       for(unsigned t=0; t < n; t++)
      |                         ~~^~~
mmseq.cpp:774:11: warning: unused variable ‘threadid’ [-Wunused-variable]
  774 |       int threadid=OMP_GET_THREAD_NUM;
      |           ^~~~~~~~
mmseq.cpp:829:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  829 |   for(unsigned t=0; t < n; t++)
      |                     ~~^~~
mmseq.cpp:912:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  912 |       for(unsigned t=0; t < n; t++) {
      |                         ~~^~~
mmseq.cpp:940:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  940 |   for(int i=0; i < identical_transcripts.size() * trace_length; i++) mu_trace_identical[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:961:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  961 |   for(int i=0; i < gene2transcripts.size() * trace_length; i++) mu_trace_gene[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1098:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1098 |   for(unsigned t=0; t < n; t++) gofs << indexSid[t] << " ";
      |                     ~~^~~
mmseq.cpp:1112:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1112 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1136:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1136 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1144:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1144 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1149:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1149 |   for(int i=0;i < identical_transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1156:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1156 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1161:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1161 |   for(int i=0;i < gene2transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1168:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1168 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1179:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1179 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1189:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1189 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1208:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1208 |     for(int t=0; t < identical_transcripts.size() ; t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1212:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1212 |     for(int t=0; t < gene2transcripts.size(); t++){
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1226:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1226 |   for(int i=0; i < identical_transcripts.size() ; i++) meanmu_identical[i] /= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1227:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1227 |   for(int i=0; i < gene2transcripts.size(); i++) meanmu_gene[i]/= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1330:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1330 |   for(int t=0; t < identical_transcripts.size(); t++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1349:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1349 |   for(int g=0; g < gene2transcripts.size(); g++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1473:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1473 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1475:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1475 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1482:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1482 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1484:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1484 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1506 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1508:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1508 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1514:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1514 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1516:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1516 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1536:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1536 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1538:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1538 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1544:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1544 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1546:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1546 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1560:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1560 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1562:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1562 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1582:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1582 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1584:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1584 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1599:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1599 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1601:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1601 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1619:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1619 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1621:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1621 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1644:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1644 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1646:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1646 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1656:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1656 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1658:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1658 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:308:8: warning: unused variable ‘buf16384’ [-Wunused-variable]
  308 |   char buf16384[16384];
      |        ^~~~~~~~
mmseq.cpp:391:8: warning: variable ‘doublehit’ set but not used [-Wunused-but-set-variable]
  391 |   bool doublehit;
      |        ^~~~~~~~~
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 fasta.o hitsio.o bam2hits.cpp -o ../bin/bam2hits -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
bam2hits.cpp: In function ‘void outputMergeHeaders(std::vector<FastaRecord>&, char, const char*, bool, HitsfileWriter&)’:
bam2hits.cpp:109:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  109 |   for(int i=0; i < sortedfastas.size()-1; i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:119:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  119 |       for(int j=0; j < curSet.size()-1; j++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  137 |   for(int j=0; j < curSet.size()-1; j++) {
      |                ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp: In function ‘std::vector<Alignment> repetitiveTranscriptFilter(std::vector<Alignment>&, int)’:
bam2hits.cpp:218:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Alignment>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  218 |   for(int j=0; j < alns.size(); j++) {
      |                ~~^~~~~~~~~~~~~
bam2hits.cpp:219:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  219 |     if(i < torem.size() && j==torem[i]) {
      |        ~~^~~~~~~~~~~~~~
bam2hits.cpp: In function ‘int main(int, char**)’:
bam2hits.cpp:518:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  518 |         if(_B != tg[0].size()-2) {
      |            ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:520:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  520 |           if(_A == tg[0].size()-2) {
      |              ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:522:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  522 |             if(_A != tg[1].size()-2) {
      |                ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:558:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  558 |       for(int i=1; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:609:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  609 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:645:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  645 |     for(int i=0;i < fastas.size(); i++) transcriptCounts[i] /= (double)fastas[i].seq().size();
      |                 ~~^~~~~~~~~~~~~~~
bam2hits.cpp:659:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  659 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:662:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  662 |         for(int j =0; j < fastas[i].seq().size(); j++) {
      |                       ~~^~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:663:44: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  663 |           int tag = (j <= MSEQ_BEFORE || j >= fastas[i].seq().size()-MSEQ_AFTER) ? -2 : 0;
      |                                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:791:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  791 |       for(int j=MSEQ_BEFORE + 1; j <= fastas[i].seq().length()-MSEQ_AFTER; j++) {
      |                                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:920:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  920 |     for(int j=1; j < frequencies.size()-WINDOWFORISIZEMODE + 1; j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:948:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  948 |     for(int i=0; i < testIsizes.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
bam2hits.cpp:959:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  959 |     for(int i=0; i < heights.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:997:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  997 |       for(int fl=1; fl <= (it->seq()).size(); fl++) {
      |                     ~~~^~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:1091:56: warning: comparing the result of pointer addition ‘(bam_aux_get(((const bam1_t*)line), ((const char*)"NM")) + ((sizetype)ait.__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >::operator->()->Alignment::NM()))’ and NULL [-Waddress]
 1091 |             ait->NM(ait->NM() + bam_aux_get(line,"NM") == NULL ? 0 : bam_aux2i(bam_aux_get(line,"NM")));
      |                                                        ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -O3 fasta.o extract_transcripts.cpp -o ../bin/extract_transcripts
extract_transcripts.cpp: In function ‘int main(int, char**)’:
extract_transcripts.cpp:122:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  122 |       for(int i=0; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
extract_transcripts.cpp:169:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  169 |     for(int i=0; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:195:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  195 |       for(int i=0; i < it->starts()->size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~
extract_transcripts.cpp:203:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  203 |       while(faline < stitch.size()) {
      |             ~~~~~~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:108:7: warning: unused variable ‘line’ [-Wunused-variable]
  108 |   int line=0;
      |       ^~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 hitsio.o hitstools.cpp -o ../bin/hitstools -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
hitstools.cpp: In function ‘void convert(char*, std::string)’:
hitstools.cpp:51:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   51 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp: In function ‘int main(int, char**)’:
hitstools.cpp:96:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   96 |                 for(int i = 0; i < transcriptName.size(); i++) {
      |                                ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp:136:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  136 |     for(int i = 0; i < transcriptName.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O2 bms.o mmdiff.cpp -o ../bin/mmdiff -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmdiff.cpp: In function ‘void parse_mmseq(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, int, int, double, bool)’:
mmdiff.cpp:100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  100 |   for(int i=0; i < filenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:111:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  111 |     for(int j=0; j < tokens.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp:138:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  138 |       if(k + 1 > features.size()) {
      |          ~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:147:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  147 |       if(k+1 > y.n_rows) {
      |          ~~~~^~~~~~~~~~
mmdiff.cpp:152:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  152 |       if(!useprops && tokens[lmg_ind]=="NA" || useprops && tokens[mp_ind]=="NA") {
      |          ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:173:62: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  173 |   if(range_start >=0 && range_end > range_start && range_end < y.n_rows) {
      |                                                    ~~~~~~~~~~^~~~~~~~~~
mmdiff.cpp:94:46: warning: variable ‘mcse_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                              ^~~~~~~~
mmdiff.cpp:94:59: warning: variable ‘iact_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                                           ^~~~~~~~
mmdiff.cpp: In function ‘void apply_normalisation(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, arma::Mat<double>&, arma::Mat<double>&, double)’:
mmdiff.cpp:212:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  212 |   for(int i=0; i < uh.n_rows; i++) {
      |                ~~^~~~~~~~~~~
mmdiff.cpp:214:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  214 |     for(int j=0; j < uh.n_cols; j++) {
      |                  ~~^~~~~~~~~~~
mmdiff.cpp:230:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  230 |   for(int i=0; i < use.size(); i++) {
      |                ~~^~~~~~~~~~~~
mmdiff.cpp:232:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  232 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp:239:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  239 |   for(int sample=0; sample < y.n_cols; sample++) {
      |                     ~~~~~~~^~~~~~~~~~
mmdiff.cpp:241:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  241 |     for(int i=0; i < use.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmdiff.cpp:246:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  246 |     for(int i=0; i < y.n_rows; i++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void apply_permutation(arma::Mat<double>&, arma::Mat<double>&)’:
mmdiff.cpp:257:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  257 |   for(int j=0; j< y.n_cols; j++) randinds.push_back(j);
      |                ~^~~~~~~~~~
mmdiff.cpp:258:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  258 |   for(int i=0; i < y.n_rows; i++) {
      |                ~~^~~~~~~~~~
mmdiff.cpp:259:19: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<int*, vector<int, allocator<int> > >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations]
  259 |     random_shuffle(randinds.begin(), randinds.end());
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/algorithm:61,
                 from mmdiff.cpp:31:
/usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here
 4581 |     random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last)
      |     ^~~~~~~~~~~~~~
mmdiff.cpp:260:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  260 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void parse_matrices(std::string, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<int>&, int)’:
mmdiff.cpp:310:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  310 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp: In function ‘int main(int, char**)’:
mmdiff.cpp:420:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  420 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:431:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  431 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:439:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  439 |       while(ss < arguments.size()) {
      |             ~~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:451:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  451 |       if(ss != arguments.size()) {
      |          ~~~^~~~~~~~~~~~~~~~~~~
mmdiff.cpp:578:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  578 |   for(int i=0; i < arguments.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:640:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  640 |     for(int i=0; i < simple_de.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:759:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  759 |     if(inburnin && iter == OUTLEN/10 || !inburnin && iter==tuneiters) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:764:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  764 |     for(int feature=0; feature < features.size(); feature++) {
      |                        ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:837:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  837 |     if(inburnin && iter % subsample_burnin ==0 || !inburnin && iter >= tuneiters && (iter - tuneiters) % subsample_iter == 0) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:886:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  886 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
mmdiff.cpp:898:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  898 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:902:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string<char>::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare]
  902 |       found2 = found2==string::npos ? -1 : found2;
      |                ~~~~~~^~~~~~~~~~~~~~
mmdiff.cpp:907:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  907 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:909:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  909 |     if(f < samplenames.size()-1) cout << "\t";
      |        ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:914:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  914 |   for(int feature=0; feature < features.size(); feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:926:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  926 |         for(int l=0; l < M.n_cols; l++) {
      |                      ~~^~~~~~~~~~
mmdiff.cpp:936:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  936 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:939:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  939 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:941:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  941 |       if(f < samplenames.size()-1) cout << "\t";
      |          ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:951:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  951 |       for(int feature=0; feature < features.size(); feature++) {
      |                          ~~~~~~~~^~~~~~~~~~~~~~~~~
/usr/bin/ld: /tmp/ccuG5fOp.ltrans0.ltrans.o: in function `main':
/builddir/build/BUILD/mmseq-1.0.11/src/bam2hits.cpp:653:(.text.startup+0x2cb4): warning: the use of `tmpnam' is dangerous, better use `mkstemp'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.2K0jZY
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x
++ dirname /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ rm -rf /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x
+ mkdir -p /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/bam2hits /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/extract_transcripts /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/hitstools /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/mmcollapse /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/mmdiff /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/mmseq /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/offsetGTF /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/t2g_hits /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/fastagrep.sh bin/mouse_strain_transcriptome.sh bin/usage.sh /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/filterGTF.rb bin/haploref.rb bin/testregexp.rb /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/ensembl_gtf_to_gff.pl /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.0.11-16.fc40 --unique-debug-suffix -1.0.11-16.fc40.s390x --unique-debug-src-base mmseq-1.0.11-16.fc40.s390x --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/mmseq-1.0.11
find-debuginfo: starting
Extracting debug info from 8 files
DWARF-compressing 8 files
sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/mmseq-1.0.11-16.fc40.s390x
542 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/ensembl_gtf_to_gff.pl from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/testregexp.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/haploref.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/filterGTF.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/usage.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/mouse_strain_transcriptome.sh from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/bin/fastagrep.sh from /bin/bash to #!/usr/bin/bash
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Mcw2QR
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
++ bin/mmseq --version
++ true
+ test mmseq-1.0.11 = mmseq-1.0.11
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: mmseq-1.0.11-16.fc40.s390x
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.CDvofB
+ umask 022
+ cd /builddir/build/BUILD
+ cd mmseq-1.0.11
+ DOCDIR=/builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/share/doc/mmseq
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11/README.md /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11/COPYING /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11/doc /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/share/doc/mmseq
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: mmseq = 1.0.11-16.fc40 mmseq(s390-64) = 1.0.11-16.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/bash /usr/bin/perl /usr/bin/ruby /usr/bin/sh libboost_iostreams.so.1.83.0()(64bit) libboost_regex.so.1.83.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.2)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgsl.so.27()(64bit) libgslcblas.so.0()(64bit) libhts.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) perl(strict) rtld(GNU_HASH)
Processing files: mmseq-debugsource-1.0.11-16.fc40.s390x
Provides: mmseq-debugsource = 1.0.11-16.fc40 mmseq-debugsource(s390-64) = 1.0.11-16.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: mmseq-debuginfo-1.0.11-16.fc40.s390x
Provides: debuginfo(build-id) = 0cc02d70a35fe4213a5da116a823b12bb4d31e8e debuginfo(build-id) = 462a52e42b889a97d6865d2a208d387897c792e0 debuginfo(build-id) = 5124052d79b0542249dfa19b05ae7b54524b7429 debuginfo(build-id) = 57fcf7297cb25d9bf6f93b73b640d6754724f445 debuginfo(build-id) = 7921d30d374a23629853f98f46745128408c1d68 debuginfo(build-id) = 79f50c2b4c101f1982bb50fe52b5f84c61604291 debuginfo(build-id) = 90753f2b96c0e1f292027f52741a20eabeeb89d4 debuginfo(build-id) = 989d1de11ca41d431c6b1f100051afedf64adf33 mmseq-debuginfo = 1.0.11-16.fc40 mmseq-debuginfo(s390-64) = 1.0.11-16.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: mmseq-debugsource(s390-64) = 1.0.11-16.fc40
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x
Wrote: /builddir/build/RPMS/mmseq-1.0.11-16.fc40.s390x.rpm
Wrote: /builddir/build/RPMS/mmseq-debugsource-1.0.11-16.fc40.s390x.rpm
Wrote: /builddir/build/RPMS/mmseq-debuginfo-1.0.11-16.fc40.s390x.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.YfbJvo
+ umask 022
+ cd /builddir/build/BUILD
+ cd mmseq-1.0.11
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.npGJqp
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-SPECPARTS
+ rm -rf mmseq-1.0.11 mmseq-1.0.11.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0

RPM build warnings:
    %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Finish: rpmbuild mmseq-1.0.11-16.fc40.src.rpm
Finish: build phase for mmseq-1.0.11-16.fc40.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-s390x-1702482417.624082/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-s390x-1702482417.624082/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-s390x-1702482417.624082/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-16.fc40.src.rpm) Config(child) 2 minutes 1 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "16.fc40",
            "arch": "s390x"
        },
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "16.fc40",
            "arch": "src"
        },
        {
            "name": "mmseq-debuginfo",
            "epoch": null,
            "version": "1.0.11",
            "release": "16.fc40",
            "arch": "s390x"
        },
        {
            "name": "mmseq-debugsource",
            "epoch": null,
            "version": "1.0.11",
            "release": "16.fc40",
            "arch": "s390x"
        }
    ]
}
RPMResults finished