Warning: Permanently added '169.63.178.219' (ED25519) to the list of known hosts.
You can reproduce this build on your computer by running:
sudo dnf install copr-rpmbuild
/usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6745622-fedora-rawhide-s390x --chroot fedora-rawhide-s390x
Version: 0.70
PID: 6316
Logging PID: 6317
Task:
{'appstream': False,
'background': True,
'build_id': 6745622,
'buildroot_pkgs': [],
'chroot': 'fedora-rawhide-s390x',
'enable_net': False,
'fedora_review': False,
'git_hash': '2ed9d1e86a2a9ad4b2b3dea57cbe20a8b80d3205',
'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/ppalka/boost-1.83-all-arches/mmseq',
'isolation': 'default',
'memory_reqs': 2048,
'package_name': 'mmseq',
'package_version': '1.0.11-16',
'project_dirname': 'boost-1.83-all-arches',
'project_name': 'boost-1.83-all-arches',
'project_owner': 'ppalka',
'repo_priority': None,
'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/ppalka/boost-1.83-all-arches/fedora-rawhide-s390x/',
'id': 'copr_base',
'name': 'Copr repository',
'priority': None}],
'sandbox': 'ppalka/boost-1.83-all-arches--ppalka',
'source_json': {},
'source_type': None,
'submitter': 'ppalka',
'tags': [],
'task_id': '6745622-fedora-rawhide-s390x',
'timeout': 115200,
'uses_devel_repo': False,
'with_opts': [],
'without_opts': []}
Running: git clone https://copr-dist-git.fedorainfracloud.org/git/ppalka/boost-1.83-all-arches/mmseq /var/lib/copr-rpmbuild/workspace/workdir-cux355ml/mmseq --depth 500 --no-single-branch --recursive
cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/ppalka/boost-1.83-all-arches/mmseq', '/var/lib/copr-rpmbuild/workspace/workdir-cux355ml/mmseq', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout:
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-cux355ml/mmseq'...
Running: git checkout 2ed9d1e86a2a9ad4b2b3dea57cbe20a8b80d3205 --
cmd: ['git', 'checkout', '2ed9d1e86a2a9ad4b2b3dea57cbe20a8b80d3205', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-cux355ml/mmseq
rc: 0
stdout:
stderr: Note: switching to '2ed9d1e86a2a9ad4b2b3dea57cbe20a8b80d3205'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:
git switch -c <new-branch-name>
Or undo this operation with:
git switch -
Turn off this advice by setting config variable advice.detachedHead to false
HEAD is now at 2ed9d1e automatic import of mmseq
Running: copr-distgit-client sources
cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-cux355ml/mmseq
rc: 0
stdout:
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading 1.0.11.zip
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o 1.0.11.zip --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/ppalka/boost-1.83-all-arches/mmseq/1.0.11.zip/md5/c727916d339d7a2111523800b621ce2b/1.0.11.zip
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 2781k 100 2781k 0 0 545k 0 0:00:05 0:00:05 --:--:-- 724k
INFO: Reading stdout from command: md5sum 1.0.11.zip
Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-cux355ml/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-cux355ml/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1702482417.624082 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.2 starting (python version = 3.11.3, NVR = mock-5.2-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-cux355ml/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-cux355ml/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1702482417.624082 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-cux355ml/mmseq/mmseq.spec) Config(fedora-rawhide-s390x)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.2
INFO: Mock Version: 5.2
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1702482417.624082/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-s390x-bootstrap-1702482417.624082/root
INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/1dcc8587651e7b062fe2a5b463ae8981bff61ec4f02b37098f8dca28c3fac419/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/1dcc8587651e7b062fe2a5b463ae8981bff61ec4f02b37098f8dca28c3fac419/merged) with podman image umount
INFO: Package manager dnf detected and used (fallback)
INFO: Bootstrap image not marked ready
Start(bootstrap): installing dnf tooling
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 472 kB/s | 2.5 MB 00:05
fedora 5.1 MB/s | 63 MB 00:12
Last metadata expiration check: 0:00:01 ago on Wed Dec 13 15:47:23 2023.
Package python3-dnf-4.18.2-1.fc40.noarch is already installed.
Dependencies resolved.
================================================================================
Package Arch Version Repository Size
================================================================================
Installing:
python3-dnf-plugins-core noarch 4.4.4-1.fc40 fedora 317 k
Installing dependencies:
dbus-libs s390x 1:1.14.10-1.fc40 fedora 159 k
python3-dateutil noarch 1:2.8.2-11.fc40 fedora 356 k
python3-dbus s390x 1.3.2-4.fc39 fedora 157 k
python3-distro noarch 1.8.0-6.fc39 fedora 49 k
python3-six noarch 1.16.0-12.fc39 fedora 41 k
python3-systemd s390x 235-5.fc39 fedora 106 k
Transaction Summary
================================================================================
Install 7 Packages
Total download size: 1.2 M
Installed size: 3.6 M
Downloading Packages:
(1/7): python3-dbus-1.3.2-4.fc39.s390x.rpm 423 kB/s | 157 kB 00:00
(2/7): dbus-libs-1.14.10-1.fc40.s390x.rpm 399 kB/s | 159 kB 00:00
(3/7): python3-distro-1.8.0-6.fc39.noarch.rpm 596 kB/s | 49 kB 00:00
(4/7): python3-dateutil-2.8.2-11.fc40.noarch.rp 767 kB/s | 356 kB 00:00
(5/7): python3-systemd-235-5.fc39.s390x.rpm 1.3 MB/s | 106 kB 00:00
(6/7): python3-six-1.16.0-12.fc39.noarch.rpm 404 kB/s | 41 kB 00:00
(7/7): python3-dnf-plugins-core-4.4.4-1.fc40.no 1.5 MB/s | 317 kB 00:00
--------------------------------------------------------------------------------
Total 1.7 MB/s | 1.2 MB 00:00
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Preparing : 1/1
Installing : python3-systemd-235-5.fc39.s390x 1/7
Installing : python3-six-1.16.0-12.fc39.noarch 2/7
Installing : python3-dateutil-1:2.8.2-11.fc40.noarch 3/7
Installing : python3-distro-1.8.0-6.fc39.noarch 4/7
Installing : dbus-libs-1:1.14.10-1.fc40.s390x 5/7
Installing : python3-dbus-1.3.2-4.fc39.s390x 6/7
Installing : python3-dnf-plugins-core-4.4.4-1.fc40.noarch 7/7
Running scriptlet: python3-dnf-plugins-core-4.4.4-1.fc40.noarch 7/7
Installed:
dbus-libs-1:1.14.10-1.fc40.s390x
python3-dateutil-1:2.8.2-11.fc40.noarch
python3-dbus-1.3.2-4.fc39.s390x
python3-distro-1.8.0-6.fc39.noarch
python3-dnf-plugins-core-4.4.4-1.fc40.noarch
python3-six-1.16.0-12.fc39.noarch
python3-systemd-235-5.fc39.s390x
Complete!
Finish(bootstrap): installing dnf tooling
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1702482417.624082/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf detected and used (direct choice)
Start: installing minimal buildroot with dnf
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 243 kB/s | 2.5 MB 00:10
fedora 10 MB/s | 63 MB 00:06
Last metadata expiration check: 0:00:01 ago on Wed Dec 13 15:48:14 2023.
Dependencies resolved.
================================================================================
Package Arch Version Repo Size
================================================================================
Installing group/module packages:
bash s390x 5.2.21-2.fc40 fedora 1.8 M
bzip2 s390x 1.0.8-16.fc39 fedora 53 k
coreutils s390x 9.4-1.fc40 fedora 1.2 M
cpio s390x 2.14-5.fc40 fedora 283 k
diffutils s390x 3.10-3.fc39 fedora 407 k
fedora-release-common noarch 40-0.20 fedora 20 k
findutils s390x 1:4.9.0-6.fc40 fedora 497 k
gawk s390x 5.2.2-2.fc39 fedora 1.1 M
glibc-minimal-langpack s390x 2.38.9000-27.fc40 fedora 86 k
grep s390x 3.11-5.fc40 fedora 305 k
gzip s390x 1.12-6.fc39 fedora 173 k
info s390x 7.1-1.fc40 fedora 195 k
patch s390x 2.7.6-22.fc39 fedora 134 k
redhat-rpm-config noarch 271-1.fc40 fedora 81 k
rpm-build s390x 4.19.1-1.fc40 fedora 79 k
sed s390x 4.8-14.fc39 fedora 309 k
shadow-utils s390x 2:4.14.0-2.fc40 fedora 1.3 M
tar s390x 2:1.35-2.fc40 fedora 874 k
unzip s390x 6.0-62.fc39 fedora 194 k
util-linux s390x 2.39.2-1.fc40 fedora 1.1 M
which s390x 2.21-40.fc39 fedora 43 k
xz s390x 5.4.5-1.fc40 fedora 558 k
Installing dependencies:
alternatives s390x 1.25-1.fc39 fedora 39 k
ansible-srpm-macros noarch 1-11.fc39 fedora 21 k
audit-libs s390x 3.1.2-5.fc40 fedora 121 k
authselect s390x 1.4.3-1.fc40 fedora 149 k
authselect-libs s390x 1.4.3-1.fc40 fedora 248 k
basesystem noarch 11-18.fc39 fedora 7.2 k
binutils s390x 2.41-16.fc40 fedora 5.9 M
binutils-gold s390x 2.41-16.fc40 fedora 991 k
bzip2-libs s390x 1.0.8-16.fc39 fedora 46 k
ca-certificates noarch 2023.2.62_v7.0.401-4.fc40 fedora 863 k
coreutils-common s390x 9.4-1.fc40 fedora 2.1 M
cracklib s390x 2.9.11-2.fc39 fedora 94 k
crypto-policies noarch 20231204-1.git1e3a2e4.fc40 fedora 100 k
curl s390x 8.5.0-1.fc40 fedora 372 k
cyrus-sasl-lib s390x 2.1.28-11.fc39 fedora 819 k
debugedit s390x 5.0-12.fc40 fedora 81 k
dwz s390x 0.15-3.fc39 fedora 144 k
ed s390x 1.19-4.fc39 fedora 80 k
efi-srpm-macros noarch 5-9.fc39 fedora 22 k
elfutils s390x 0.190-4.fc40 fedora 576 k
elfutils-debuginfod-client s390x 0.190-4.fc40 fedora 38 k
elfutils-default-yama-scope noarch 0.190-4.fc40 fedora 13 k
elfutils-libelf s390x 0.190-4.fc40 fedora 200 k
elfutils-libs s390x 0.190-4.fc40 fedora 276 k
fedora-gpg-keys noarch 40-0.2 fedora 130 k
fedora-release noarch 40-0.20 fedora 9.3 k
fedora-release-identity-basic noarch 40-0.20 fedora 10 k
fedora-repos noarch 40-0.2 fedora 9.3 k
fedora-repos-rawhide noarch 40-0.2 fedora 8.9 k
file s390x 5.45-1.fc40 fedora 49 k
file-libs s390x 5.45-1.fc40 fedora 769 k
filesystem s390x 3.18-6.fc39 fedora 1.1 M
fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k
forge-srpm-macros noarch 0.2.0-1.fc40 fedora 18 k
fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k
gdb-minimal s390x 14.1-1.fc40 fedora 4.1 M
gdbm s390x 1:1.23-4.fc39 fedora 156 k
gdbm-libs s390x 1:1.23-4.fc39 fedora 58 k
ghc-srpm-macros noarch 1.6.1-3.fc40 fedora 8.1 k
glibc s390x 2.38.9000-27.fc40 fedora 1.9 M
glibc-common s390x 2.38.9000-27.fc40 fedora 386 k
glibc-gconv-extra s390x 2.38.9000-27.fc40 fedora 1.7 M
gmp s390x 1:6.2.1-5.fc39 fedora 325 k
gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k
go-srpm-macros noarch 3.3.1-1.fc40 fedora 28 k
jansson s390x 2.13.1-7.fc39 fedora 44 k
kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k
keyutils-libs s390x 1.6.1-7.fc39 fedora 31 k
krb5-libs s390x 1.21.2-2.fc40 fedora 780 k
libacl s390x 2.3.1-11.fc40 fedora 25 k
libarchive s390x 3.7.2-1.fc40 fedora 440 k
libattr s390x 2.5.1-9.fc40 fedora 18 k
libblkid s390x 2.39.2-1.fc40 fedora 120 k
libbrotli s390x 1.1.0-1.fc40 fedora 379 k
libcap s390x 2.69-1.fc40 fedora 85 k
libcap-ng s390x 0.8.3-8.fc40 fedora 32 k
libcom_err s390x 1.47.0-2.fc39 fedora 26 k
libcurl s390x 8.5.0-1.fc40 fedora 362 k
libeconf s390x 0.5.2-1.fc40 fedora 32 k
libevent s390x 2.1.12-9.fc39 fedora 260 k
libfdisk s390x 2.39.2-1.fc40 fedora 165 k
libffi s390x 3.4.4-4.fc39 fedora 36 k
libgcc s390x 13.2.1-6.fc40 fedora 85 k
libgomp s390x 13.2.1-6.fc40 fedora 325 k
libidn2 s390x 2.3.4-3.fc39 fedora 118 k
libmount s390x 2.39.2-1.fc40 fedora 158 k
libnghttp2 s390x 1.58.0-1.fc40 fedora 78 k
libnsl2 s390x 2.0.0-6.fc39 fedora 30 k
libpkgconf s390x 1.9.5-2.fc39 fedora 38 k
libpsl s390x 0.21.2-4.fc39 fedora 63 k
libpwquality s390x 1.4.5-6.fc39 fedora 121 k
libselinux s390x 3.6-0.rc2.1.fc40 fedora 92 k
libsemanage s390x 3.6-0.rc2.1.fc40 fedora 119 k
libsepol s390x 3.6-0.rc2.1.fc40 fedora 346 k
libsigsegv s390x 2.14-5.fc39 fedora 27 k
libsmartcols s390x 2.39.2-1.fc40 fedora 70 k
libssh s390x 0.10.5-2.fc39 fedora 209 k
libssh-config noarch 0.10.5-2.fc39 fedora 9.2 k
libstdc++ s390x 13.2.1-6.fc40 fedora 953 k
libtasn1 s390x 4.19.0-3.fc39 fedora 77 k
libtirpc s390x 1.3.4-0.fc40 fedora 96 k
libunistring s390x 1.1-5.fc40 fedora 556 k
libutempter s390x 1.2.1-10.fc39 fedora 26 k
libuuid s390x 2.39.2-1.fc40 fedora 28 k
libverto s390x 0.3.2-6.fc39 fedora 21 k
libxcrypt s390x 4.4.36-2.fc39 fedora 124 k
libxml2 s390x 2.12.3-1.fc40 fedora 705 k
libzstd s390x 1.5.5-4.fc39 fedora 342 k
lua-libs s390x 5.4.6-3.fc39 fedora 142 k
lua-srpm-macros noarch 1-9.fc39 fedora 8.6 k
lz4-libs s390x 1.9.4-4.fc39 fedora 81 k
mpfr s390x 4.2.1-1.fc40 fedora 297 k
ncurses-base noarch 6.4-8.20231001.fc40 fedora 88 k
ncurses-libs s390x 6.4-8.20231001.fc40 fedora 362 k
ocaml-srpm-macros noarch 9-1.fc40 fedora 9.0 k
openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k
openldap s390x 2.6.6-1.fc39 fedora 262 k
openssl-libs s390x 1:3.1.4-1.fc40 fedora 1.9 M
p11-kit s390x 0.25.3-1.fc40 fedora 533 k
p11-kit-trust s390x 0.25.3-1.fc40 fedora 142 k
package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k
pam s390x 1.5.3-8.fc40 fedora 557 k
pam-libs s390x 1.5.3-8.fc40 fedora 59 k
pcre2 s390x 10.42-2.fc40 fedora 250 k
pcre2-syntax noarch 10.42-2.fc40 fedora 143 k
perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k
pkgconf s390x 1.9.5-2.fc39 fedora 43 k
pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k
pkgconf-pkg-config s390x 1.9.5-2.fc39 fedora 9.6 k
popt s390x 1.19-3.fc39 fedora 69 k
publicsuffix-list-dafsa noarch 20230812-1.fc40 fedora 57 k
pyproject-srpm-macros noarch 1.10.0-1.fc40 fedora 14 k
python-srpm-macros noarch 3.12-5.fc40 fedora 25 k
qt5-srpm-macros noarch 5.15.11-1.fc40 fedora 8.3 k
qt6-srpm-macros noarch 6.6.1-1.fc40 fedora 8.6 k
readline s390x 8.2-4.fc39 fedora 229 k
rpm s390x 4.19.1-1.fc40 fedora 537 k
rpm-build-libs s390x 4.19.1-1.fc40 fedora 97 k
rpm-libs s390x 4.19.1-1.fc40 fedora 324 k
rpm-sequoia s390x 1.5.0-2.fc40 fedora 1.0 M
rust-srpm-macros noarch 25.2-2.fc40 fedora 13 k
setup noarch 2.14.5-1.fc40 fedora 155 k
sqlite-libs s390x 3.44.2-1.fc40 fedora 742 k
systemd-libs s390x 255-1.fc40 fedora 711 k
util-linux-core s390x 2.39.2-1.fc40 fedora 496 k
xxhash-libs s390x 0.8.2-1.fc39 fedora 37 k
xz-libs s390x 5.4.5-1.fc40 fedora 114 k
zip s390x 3.0-39.fc40 fedora 283 k
zlib s390x 1.2.13-5.fc40 fedora 101 k
zstd s390x 1.5.5-4.fc39 fedora 506 k
Installing Groups:
Buildsystem building group
Transaction Summary
================================================================================
Install 152 Packages
Total download size: 52 M
Installed size: 178 M
Downloading Packages:
(1/152): ansible-srpm-macros-1-11.fc39.noarch.r 440 kB/s | 21 kB 00:00
(2/152): alternatives-1.25-1.fc39.s390x.rpm 736 kB/s | 39 kB 00:00
(3/152): audit-libs-3.1.2-5.fc40.s390x.rpm 1.5 MB/s | 121 kB 00:00
(4/152): basesystem-11-18.fc39.noarch.rpm 467 kB/s | 7.2 kB 00:00
(5/152): authselect-1.4.3-1.fc40.s390x.rpm 2.7 MB/s | 149 kB 00:00
(6/152): authselect-libs-1.4.3-1.fc40.s390x.rpm 3.9 MB/s | 248 kB 00:00
(7/152): binutils-gold-2.41-16.fc40.s390x.rpm 19 MB/s | 991 kB 00:00
(8/152): bash-5.2.21-2.fc40.s390x.rpm 22 MB/s | 1.8 MB 00:00
(9/152): bzip2-1.0.8-16.fc39.s390x.rpm 3.4 MB/s | 53 kB 00:00
(10/152): bzip2-libs-1.0.8-16.fc39.s390x.rpm 3.0 MB/s | 46 kB 00:00
(11/152): binutils-2.41-16.fc40.s390x.rpm 57 MB/s | 5.9 MB 00:00
(12/152): ca-certificates-2023.2.62_v7.0.401-4. 33 MB/s | 863 kB 00:00
(13/152): coreutils-9.4-1.fc40.s390x.rpm 53 MB/s | 1.2 MB 00:00
(14/152): cpio-2.14-5.fc40.s390x.rpm 18 MB/s | 283 kB 00:00
(15/152): cracklib-2.9.11-2.fc39.s390x.rpm 6.0 MB/s | 94 kB 00:00
(16/152): crypto-policies-20231204-1.git1e3a2e4 6.4 MB/s | 100 kB 00:00
(17/152): coreutils-common-9.4-1.fc40.s390x.rpm 57 MB/s | 2.1 MB 00:00
(18/152): curl-8.5.0-1.fc40.s390x.rpm 21 MB/s | 372 kB 00:00
(19/152): cyrus-sasl-lib-2.1.28-11.fc39.s390x.r 47 MB/s | 819 kB 00:00
(20/152): debugedit-5.0-12.fc40.s390x.rpm 5.2 MB/s | 81 kB 00:00
(21/152): diffutils-3.10-3.fc39.s390x.rpm 23 MB/s | 407 kB 00:00
(22/152): dwz-0.15-3.fc39.s390x.rpm 9.1 MB/s | 144 kB 00:00
(23/152): ed-1.19-4.fc39.s390x.rpm 5.1 MB/s | 80 kB 00:00
(24/152): efi-srpm-macros-5-9.fc39.noarch.rpm 1.4 MB/s | 22 kB 00:00
(25/152): elfutils-0.190-4.fc40.s390x.rpm 35 MB/s | 576 kB 00:00
(26/152): elfutils-debuginfod-client-0.190-4.fc 2.5 MB/s | 38 kB 00:00
(27/152): elfutils-default-yama-scope-0.190-4.f 851 kB/s | 13 kB 00:00
(28/152): elfutils-libelf-0.190-4.fc40.s390x.rp 13 MB/s | 200 kB 00:00
(29/152): elfutils-libs-0.190-4.fc40.s390x.rpm 17 MB/s | 276 kB 00:00
(30/152): fedora-gpg-keys-40-0.2.noarch.rpm 8.1 MB/s | 130 kB 00:00
(31/152): fedora-release-40-0.20.noarch.rpm 620 kB/s | 9.3 kB 00:00
(32/152): fedora-release-common-40-0.20.noarch. 1.3 MB/s | 20 kB 00:00
(33/152): fedora-release-identity-basic-40-0.20 667 kB/s | 10 kB 00:00
(34/152): fedora-repos-40-0.2.noarch.rpm 624 kB/s | 9.3 kB 00:00
(35/152): fedora-repos-rawhide-40-0.2.noarch.rp 592 kB/s | 8.9 kB 00:00
(36/152): file-5.45-1.fc40.s390x.rpm 3.2 MB/s | 49 kB 00:00
(37/152): file-libs-5.45-1.fc40.s390x.rpm 45 MB/s | 769 kB 00:00
(38/152): filesystem-3.18-6.fc39.s390x.rpm 55 MB/s | 1.1 MB 00:00
(39/152): findutils-4.9.0-6.fc40.s390x.rpm 27 MB/s | 497 kB 00:00
(40/152): fonts-srpm-macros-2.0.5-12.fc39.noarc 1.7 MB/s | 26 kB 00:00
(41/152): forge-srpm-macros-0.2.0-1.fc40.noarch 1.2 MB/s | 18 kB 00:00
(42/152): fpc-srpm-macros-1.3-8.fc39.noarch.rpm 489 kB/s | 7.4 kB 00:00
(43/152): gawk-5.2.2-2.fc39.s390x.rpm 62 MB/s | 1.1 MB 00:00
(44/152): gdbm-1.23-4.fc39.s390x.rpm 9.7 MB/s | 156 kB 00:00
(45/152): gdbm-libs-1.23-4.fc39.s390x.rpm 3.7 MB/s | 58 kB 00:00
(46/152): gdb-minimal-14.1-1.fc40.s390x.rpm 110 MB/s | 4.1 MB 00:00
(47/152): ghc-srpm-macros-1.6.1-3.fc40.noarch.r 493 kB/s | 8.1 kB 00:00
(48/152): glibc-2.38.9000-27.fc40.s390x.rpm 95 MB/s | 1.9 MB 00:00
(49/152): glibc-common-2.38.9000-27.fc40.s390x. 24 MB/s | 386 kB 00:00
(50/152): glibc-minimal-langpack-2.38.9000-27.f 5.6 MB/s | 86 kB 00:00
(51/152): glibc-gconv-extra-2.38.9000-27.fc40.s 65 MB/s | 1.7 MB 00:00
(52/152): gmp-6.2.1-5.fc39.s390x.rpm 20 MB/s | 325 kB 00:00
(53/152): gnat-srpm-macros-6-3.fc39.noarch.rpm 589 kB/s | 8.8 kB 00:00
(54/152): go-srpm-macros-3.3.1-1.fc40.noarch.rp 1.8 MB/s | 28 kB 00:00
(55/152): grep-3.11-5.fc40.s390x.rpm 19 MB/s | 305 kB 00:00
(56/152): gzip-1.12-6.fc39.s390x.rpm 11 MB/s | 173 kB 00:00
(57/152): info-7.1-1.fc40.s390x.rpm 12 MB/s | 195 kB 00:00
(58/152): jansson-2.13.1-7.fc39.s390x.rpm 2.8 MB/s | 44 kB 00:00
(59/152): kernel-srpm-macros-1.0-20.fc39.noarch 700 kB/s | 10 kB 00:00
(60/152): keyutils-libs-1.6.1-7.fc39.s390x.rpm 2.0 MB/s | 31 kB 00:00
(61/152): krb5-libs-1.21.2-2.fc40.s390x.rpm 45 MB/s | 780 kB 00:00
(62/152): libacl-2.3.1-11.fc40.s390x.rpm 1.6 MB/s | 25 kB 00:00
(63/152): libarchive-3.7.2-1.fc40.s390x.rpm 25 MB/s | 440 kB 00:00
(64/152): libattr-2.5.1-9.fc40.s390x.rpm 1.2 MB/s | 18 kB 00:00
(65/152): libblkid-2.39.2-1.fc40.s390x.rpm 7.7 MB/s | 120 kB 00:00
(66/152): libbrotli-1.1.0-1.fc40.s390x.rpm 22 MB/s | 379 kB 00:00
(67/152): libcap-2.69-1.fc40.s390x.rpm 5.4 MB/s | 85 kB 00:00
(68/152): libcap-ng-0.8.3-8.fc40.s390x.rpm 2.1 MB/s | 32 kB 00:00
(69/152): libcom_err-1.47.0-2.fc39.s390x.rpm 1.7 MB/s | 26 kB 00:00
(70/152): libcurl-8.5.0-1.fc40.s390x.rpm 22 MB/s | 362 kB 00:00
(71/152): libeconf-0.5.2-1.fc40.s390x.rpm 2.1 MB/s | 32 kB 00:00
(72/152): libevent-2.1.12-9.fc39.s390x.rpm 16 MB/s | 260 kB 00:00
(73/152): libfdisk-2.39.2-1.fc40.s390x.rpm 11 MB/s | 165 kB 00:00
(74/152): libffi-3.4.4-4.fc39.s390x.rpm 2.3 MB/s | 36 kB 00:00
(75/152): libgcc-13.2.1-6.fc40.s390x.rpm 5.4 MB/s | 85 kB 00:00
(76/152): libgomp-13.2.1-6.fc40.s390x.rpm 20 MB/s | 325 kB 00:00
(77/152): libidn2-2.3.4-3.fc39.s390x.rpm 7.5 MB/s | 118 kB 00:00
(78/152): libmount-2.39.2-1.fc40.s390x.rpm 9.8 MB/s | 158 kB 00:00
(79/152): libnghttp2-1.58.0-1.fc40.s390x.rpm 5.0 MB/s | 78 kB 00:00
(80/152): libnsl2-2.0.0-6.fc39.s390x.rpm 1.9 MB/s | 30 kB 00:00
(81/152): libpkgconf-1.9.5-2.fc39.s390x.rpm 2.5 MB/s | 38 kB 00:00
(82/152): libpsl-0.21.2-4.fc39.s390x.rpm 4.1 MB/s | 63 kB 00:00
(83/152): libpwquality-1.4.5-6.fc39.s390x.rpm 7.7 MB/s | 121 kB 00:00
(84/152): libselinux-3.6-0.rc2.1.fc40.s390x.rpm 5.9 MB/s | 92 kB 00:00
(85/152): libsemanage-3.6-0.rc2.1.fc40.s390x.rp 7.5 MB/s | 119 kB 00:00
(86/152): libsepol-3.6-0.rc2.1.fc40.s390x.rpm 21 MB/s | 346 kB 00:00
(87/152): libsigsegv-2.14-5.fc39.s390x.rpm 1.7 MB/s | 27 kB 00:00
(88/152): libsmartcols-2.39.2-1.fc40.s390x.rpm 4.5 MB/s | 70 kB 00:00
(89/152): libssh-0.10.5-2.fc39.s390x.rpm 13 MB/s | 209 kB 00:00
(90/152): libssh-config-0.10.5-2.fc39.noarch.rp 609 kB/s | 9.2 kB 00:00
(91/152): libstdc++-13.2.1-6.fc40.s390x.rpm 54 MB/s | 953 kB 00:00
(92/152): libtasn1-4.19.0-3.fc39.s390x.rpm 4.9 MB/s | 77 kB 00:00
(93/152): libtirpc-1.3.4-0.fc40.s390x.rpm 6.1 MB/s | 96 kB 00:00
(94/152): libunistring-1.1-5.fc40.s390x.rpm 33 MB/s | 556 kB 00:00
(95/152): libutempter-1.2.1-10.fc39.s390x.rpm 1.7 MB/s | 26 kB 00:00
(96/152): libuuid-2.39.2-1.fc40.s390x.rpm 1.8 MB/s | 28 kB 00:00
(97/152): libverto-0.3.2-6.fc39.s390x.rpm 1.3 MB/s | 21 kB 00:00
(98/152): libxcrypt-4.4.36-2.fc39.s390x.rpm 7.9 MB/s | 124 kB 00:00
(99/152): libxml2-2.12.3-1.fc40.s390x.rpm 37 MB/s | 705 kB 00:00
(100/152): libzstd-1.5.5-4.fc39.s390x.rpm 21 MB/s | 342 kB 00:00
(101/152): lua-libs-5.4.6-3.fc39.s390x.rpm 9.0 MB/s | 142 kB 00:00
(102/152): lua-srpm-macros-1-9.fc39.noarch.rpm 572 kB/s | 8.6 kB 00:00
(103/152): lz4-libs-1.9.4-4.fc39.s390x.rpm 5.2 MB/s | 81 kB 00:00
(104/152): mpfr-4.2.1-1.fc40.s390x.rpm 19 MB/s | 297 kB 00:00
(105/152): ncurses-base-6.4-8.20231001.fc40.noa 5.6 MB/s | 88 kB 00:00
(106/152): ncurses-libs-6.4-8.20231001.fc40.s39 22 MB/s | 362 kB 00:00
(107/152): ocaml-srpm-macros-9-1.fc40.noarch.rp 599 kB/s | 9.0 kB 00:00
(108/152): openblas-srpm-macros-2-14.fc39.noarc 502 kB/s | 7.5 kB 00:00
(109/152): openldap-2.6.6-1.fc39.s390x.rpm 16 MB/s | 262 kB 00:00
(110/152): openssl-libs-3.1.4-1.fc40.s390x.rpm 95 MB/s | 1.9 MB 00:00
(111/152): p11-kit-0.25.3-1.fc40.s390x.rpm 29 MB/s | 533 kB 00:00
(112/152): p11-kit-trust-0.25.3-1.fc40.s390x.rp 9.0 MB/s | 142 kB 00:00
(113/152): package-notes-srpm-macros-0.5-9.fc39 745 kB/s | 11 kB 00:00
(114/152): pam-1.5.3-8.fc40.s390x.rpm 30 MB/s | 557 kB 00:00
(115/152): pam-libs-1.5.3-8.fc40.s390x.rpm 3.8 MB/s | 59 kB 00:00
(116/152): patch-2.7.6-22.fc39.s390x.rpm 8.5 MB/s | 134 kB 00:00
(117/152): pcre2-10.42-2.fc40.s390x.rpm 16 MB/s | 250 kB 00:00
(118/152): pcre2-syntax-10.42-2.fc40.noarch.rpm 8.8 MB/s | 143 kB 00:00
(119/152): perl-srpm-macros-1-51.fc39.noarch.rp 533 kB/s | 8.0 kB 00:00
(120/152): pkgconf-1.9.5-2.fc39.s390x.rpm 2.7 MB/s | 43 kB 00:00
(121/152): pkgconf-m4-1.9.5-2.fc39.noarch.rpm 918 kB/s | 14 kB 00:00
(122/152): pkgconf-pkg-config-1.9.5-2.fc39.s390 639 kB/s | 9.6 kB 00:00
(123/152): popt-1.19-3.fc39.s390x.rpm 4.4 MB/s | 69 kB 00:00
(124/152): publicsuffix-list-dafsa-20230812-1.f 3.7 MB/s | 57 kB 00:00
(125/152): pyproject-srpm-macros-1.10.0-1.fc40. 945 kB/s | 14 kB 00:00
(126/152): python-srpm-macros-3.12-5.fc40.noarc 1.6 MB/s | 25 kB 00:00
(127/152): qt5-srpm-macros-5.15.11-1.fc40.noarc 550 kB/s | 8.3 kB 00:00
(128/152): qt6-srpm-macros-6.6.1-1.fc40.noarch. 572 kB/s | 8.6 kB 00:00
(129/152): readline-8.2-4.fc39.s390x.rpm 14 MB/s | 229 kB 00:00
(130/152): redhat-rpm-config-271-1.fc40.noarch. 5.0 MB/s | 81 kB 00:00
(131/152): rpm-4.19.1-1.fc40.s390x.rpm 32 MB/s | 537 kB 00:00
(132/152): rpm-build-4.19.1-1.fc40.s390x.rpm 5.1 MB/s | 79 kB 00:00
(133/152): rpm-build-libs-4.19.1-1.fc40.s390x.r 6.2 MB/s | 97 kB 00:00
(134/152): rpm-libs-4.19.1-1.fc40.s390x.rpm 20 MB/s | 324 kB 00:00
(135/152): rust-srpm-macros-25.2-2.fc40.noarch. 863 kB/s | 13 kB 00:00
(136/152): rpm-sequoia-1.5.0-2.fc40.s390x.rpm 56 MB/s | 1.0 MB 00:00
(137/152): sed-4.8-14.fc39.s390x.rpm 19 MB/s | 309 kB 00:00
(138/152): setup-2.14.5-1.fc40.noarch.rpm 9.6 MB/s | 155 kB 00:00
(139/152): shadow-utils-4.14.0-2.fc40.s390x.rpm 70 MB/s | 1.3 MB 00:00
(140/152): sqlite-libs-3.44.2-1.fc40.s390x.rpm 42 MB/s | 742 kB 00:00
(141/152): systemd-libs-255-1.fc40.s390x.rpm 37 MB/s | 711 kB 00:00
(142/152): unzip-6.0-62.fc39.s390x.rpm 12 MB/s | 194 kB 00:00
(143/152): tar-1.35-2.fc40.s390x.rpm 49 MB/s | 874 kB 00:00
(144/152): util-linux-core-2.39.2-1.fc40.s390x. 29 MB/s | 496 kB 00:00
(145/152): which-2.21-40.fc39.s390x.rpm 2.7 MB/s | 43 kB 00:00
(146/152): util-linux-2.39.2-1.fc40.s390x.rpm 53 MB/s | 1.1 MB 00:00
(147/152): xxhash-libs-0.8.2-1.fc39.s390x.rpm 2.3 MB/s | 37 kB 00:00
(148/152): xz-5.4.5-1.fc40.s390x.rpm 33 MB/s | 558 kB 00:00
(149/152): xz-libs-5.4.5-1.fc40.s390x.rpm 7.3 MB/s | 114 kB 00:00
(150/152): zip-3.0-39.fc40.s390x.rpm 18 MB/s | 283 kB 00:00
(151/152): zlib-1.2.13-5.fc40.s390x.rpm 6.4 MB/s | 101 kB 00:00
(152/152): zstd-1.5.5-4.fc39.s390x.rpm 28 MB/s | 506 kB 00:00
--------------------------------------------------------------------------------
Total 8.5 MB/s | 52 MB 00:06
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0xA15B79CC:
Userid : "Fedora (40) <fedora-40-primary@fedoraproject.org>"
Fingerprint: 115D F9AE F857 853E E844 5D0A 0727 707E A15B 79CC
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary
Key imported successfully
fedora 1.6 MB/s | 1.6 kB 00:00
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary (0xA15B79CC) is already installed
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0x18B8E74C:
Userid : "Fedora (39) <fedora-39-primary@fedoraproject.org>"
Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Running scriptlet: filesystem-3.18-6.fc39.s390x 1/1
Preparing : 1/1
Installing : libgcc-13.2.1-6.fc40.s390x 1/152
Running scriptlet: libgcc-13.2.1-6.fc40.s390x 1/152
Installing : crypto-policies-20231204-1.git1e3a2e4.fc40.noarc 2/152
Running scriptlet: crypto-policies-20231204-1.git1e3a2e4.fc40.noarc 2/152
Installing : fedora-release-identity-basic-40-0.20.noarch 3/152
Installing : fedora-repos-rawhide-40-0.2.noarch 4/152
Installing : fedora-gpg-keys-40-0.2.noarch 5/152
Installing : fedora-repos-40-0.2.noarch 6/152
Installing : fedora-release-common-40-0.20.noarch 7/152
Installing : fedora-release-40-0.20.noarch 8/152
Installing : setup-2.14.5-1.fc40.noarch 9/152
warning: /etc/hosts created as /etc/hosts.rpmnew
Running scriptlet: setup-2.14.5-1.fc40.noarch 9/152
Installing : filesystem-3.18-6.fc39.s390x 10/152
Installing : basesystem-11-18.fc39.noarch 11/152
Installing : rust-srpm-macros-25.2-2.fc40.noarch 12/152
Installing : qt6-srpm-macros-6.6.1-1.fc40.noarch 13/152
Installing : qt5-srpm-macros-5.15.11-1.fc40.noarch 14/152
Installing : publicsuffix-list-dafsa-20230812-1.fc40.noarch 15/152
Installing : pkgconf-m4-1.9.5-2.fc39.noarch 16/152
Installing : perl-srpm-macros-1-51.fc39.noarch 17/152
Installing : pcre2-syntax-10.42-2.fc40.noarch 18/152
Installing : package-notes-srpm-macros-0.5-9.fc39.noarch 19/152
Installing : openblas-srpm-macros-2-14.fc39.noarch 20/152
Installing : ocaml-srpm-macros-9-1.fc40.noarch 21/152
Installing : ncurses-base-6.4-8.20231001.fc40.noarch 22/152
Installing : glibc-gconv-extra-2.38.9000-27.fc40.s390x 23/152
Running scriptlet: glibc-gconv-extra-2.38.9000-27.fc40.s390x 23/152
Installing : glibc-minimal-langpack-2.38.9000-27.fc40.s390x 24/152
Installing : glibc-common-2.38.9000-27.fc40.s390x 25/152
Running scriptlet: glibc-2.38.9000-27.fc40.s390x 26/152
Installing : glibc-2.38.9000-27.fc40.s390x 26/152
Running scriptlet: glibc-2.38.9000-27.fc40.s390x 26/152
Installing : ncurses-libs-6.4-8.20231001.fc40.s390x 27/152
Installing : bash-5.2.21-2.fc40.s390x 28/152
Running scriptlet: bash-5.2.21-2.fc40.s390x 28/152
Installing : zlib-1.2.13-5.fc40.s390x 29/152
Installing : xz-libs-5.4.5-1.fc40.s390x 30/152
Installing : bzip2-libs-1.0.8-16.fc39.s390x 31/152
Installing : readline-8.2-4.fc39.s390x 32/152
Installing : libstdc++-13.2.1-6.fc40.s390x 33/152
Installing : libuuid-2.39.2-1.fc40.s390x 34/152
Installing : libzstd-1.5.5-4.fc39.s390x 35/152
Installing : elfutils-libelf-0.190-4.fc40.s390x 36/152
Installing : popt-1.19-3.fc39.s390x 37/152
Installing : libblkid-2.39.2-1.fc40.s390x 38/152
Installing : gmp-1:6.2.1-5.fc39.s390x 39/152
Installing : libattr-2.5.1-9.fc40.s390x 40/152
Installing : libacl-2.3.1-11.fc40.s390x 41/152
Installing : libxcrypt-4.4.36-2.fc39.s390x 42/152
Installing : gdbm-libs-1:1.23-4.fc39.s390x 43/152
Installing : libeconf-0.5.2-1.fc40.s390x 44/152
Installing : lz4-libs-1.9.4-4.fc39.s390x 45/152
Installing : mpfr-4.2.1-1.fc40.s390x 46/152
Installing : dwz-0.15-3.fc39.s390x 47/152
Installing : unzip-6.0-62.fc39.s390x 48/152
Installing : file-libs-5.45-1.fc40.s390x 49/152
Installing : file-5.45-1.fc40.s390x 50/152
Installing : alternatives-1.25-1.fc39.s390x 51/152
Installing : jansson-2.13.1-7.fc39.s390x 52/152
Installing : libcap-ng-0.8.3-8.fc40.s390x 53/152
Installing : audit-libs-3.1.2-5.fc40.s390x 54/152
Installing : pam-libs-1.5.3-8.fc40.s390x 55/152
Installing : libcap-2.69-1.fc40.s390x 56/152
Installing : systemd-libs-255-1.fc40.s390x 57/152
Installing : libcom_err-1.47.0-2.fc39.s390x 58/152
Installing : libsepol-3.6-0.rc2.1.fc40.s390x 59/152
Installing : libsmartcols-2.39.2-1.fc40.s390x 60/152
Installing : libtasn1-4.19.0-3.fc39.s390x 61/152
Installing : libunistring-1.1-5.fc40.s390x 62/152
Installing : libidn2-2.3.4-3.fc39.s390x 63/152
Installing : lua-libs-5.4.6-3.fc39.s390x 64/152
Installing : pcre2-10.42-2.fc40.s390x 65/152
Installing : libselinux-3.6-0.rc2.1.fc40.s390x 66/152
Installing : sed-4.8-14.fc39.s390x 67/152
Installing : grep-3.11-5.fc40.s390x 68/152
Installing : findutils-1:4.9.0-6.fc40.s390x 69/152
Installing : xz-5.4.5-1.fc40.s390x 70/152
Installing : libmount-2.39.2-1.fc40.s390x 71/152
Installing : util-linux-core-2.39.2-1.fc40.s390x 72/152
Installing : libsemanage-3.6-0.rc2.1.fc40.s390x 73/152
Installing : shadow-utils-2:4.14.0-2.fc40.s390x 74/152
Running scriptlet: libutempter-1.2.1-10.fc39.s390x 75/152
Installing : libutempter-1.2.1-10.fc39.s390x 75/152
Installing : tar-2:1.35-2.fc40.s390x 76/152
Installing : libpsl-0.21.2-4.fc39.s390x 77/152
Installing : zip-3.0-39.fc40.s390x 78/152
Installing : zstd-1.5.5-4.fc39.s390x 79/152
Installing : cyrus-sasl-lib-2.1.28-11.fc39.s390x 80/152
Installing : gdbm-1:1.23-4.fc39.s390x 81/152
Installing : libfdisk-2.39.2-1.fc40.s390x 82/152
Installing : bzip2-1.0.8-16.fc39.s390x 83/152
Installing : libxml2-2.12.3-1.fc40.s390x 84/152
Installing : sqlite-libs-3.44.2-1.fc40.s390x 85/152
Installing : ed-1.19-4.fc39.s390x 86/152
Installing : patch-2.7.6-22.fc39.s390x 87/152
Installing : elfutils-default-yama-scope-0.190-4.fc40.noarch 88/152
Running scriptlet: elfutils-default-yama-scope-0.190-4.fc40.noarch 88/152
Installing : cpio-2.14-5.fc40.s390x 89/152
Installing : diffutils-3.10-3.fc39.s390x 90/152
Installing : keyutils-libs-1.6.1-7.fc39.s390x 91/152
Installing : libbrotli-1.1.0-1.fc40.s390x 92/152
Installing : libffi-3.4.4-4.fc39.s390x 93/152
Installing : p11-kit-0.25.3-1.fc40.s390x 94/152
Installing : p11-kit-trust-0.25.3-1.fc40.s390x 95/152
Running scriptlet: p11-kit-trust-0.25.3-1.fc40.s390x 95/152
Installing : libgomp-13.2.1-6.fc40.s390x 96/152
Installing : libnghttp2-1.58.0-1.fc40.s390x 97/152
Installing : libpkgconf-1.9.5-2.fc39.s390x 98/152
Installing : pkgconf-1.9.5-2.fc39.s390x 99/152
Installing : pkgconf-pkg-config-1.9.5-2.fc39.s390x 100/152
Installing : libsigsegv-2.14-5.fc39.s390x 101/152
Installing : gawk-5.2.2-2.fc39.s390x 102/152
Installing : libverto-0.3.2-6.fc39.s390x 103/152
Installing : xxhash-libs-0.8.2-1.fc39.s390x 104/152
Installing : libssh-config-0.10.5-2.fc39.noarch 105/152
Installing : kernel-srpm-macros-1.0-20.fc39.noarch 106/152
Installing : gnat-srpm-macros-6-3.fc39.noarch 107/152
Installing : ghc-srpm-macros-1.6.1-3.fc40.noarch 108/152
Installing : fpc-srpm-macros-1.3-8.fc39.noarch 109/152
Installing : coreutils-common-9.4-1.fc40.s390x 110/152
Installing : openssl-libs-1:3.1.4-1.fc40.s390x 111/152
Installing : coreutils-9.4-1.fc40.s390x 112/152
Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 113/152
Installing : ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 113/152
Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 113/152
Installing : krb5-libs-1.21.2-2.fc40.s390x 114/152
Installing : libtirpc-1.3.4-0.fc40.s390x 115/152
Running scriptlet: authselect-libs-1.4.3-1.fc40.s390x 116/152
Installing : authselect-libs-1.4.3-1.fc40.s390x 116/152
Installing : gzip-1.12-6.fc39.s390x 117/152
Installing : cracklib-2.9.11-2.fc39.s390x 118/152
Installing : libpwquality-1.4.5-6.fc39.s390x 119/152
Installing : authselect-1.4.3-1.fc40.s390x 120/152
Installing : libnsl2-2.0.0-6.fc39.s390x 121/152
Installing : pam-1.5.3-8.fc40.s390x 122/152
Installing : libssh-0.10.5-2.fc39.s390x 123/152
Installing : libarchive-3.7.2-1.fc40.s390x 124/152
Installing : libevent-2.1.12-9.fc39.s390x 125/152
Installing : openldap-2.6.6-1.fc39.s390x 126/152
Installing : libcurl-8.5.0-1.fc40.s390x 127/152
Installing : elfutils-libs-0.190-4.fc40.s390x 128/152
Installing : elfutils-debuginfod-client-0.190-4.fc40.s390x 129/152
Installing : binutils-gold-2.41-16.fc40.s390x 130/152
Running scriptlet: binutils-gold-2.41-16.fc40.s390x 130/152
Installing : binutils-2.41-16.fc40.s390x 131/152
Running scriptlet: binutils-2.41-16.fc40.s390x 131/152
Installing : elfutils-0.190-4.fc40.s390x 132/152
Installing : gdb-minimal-14.1-1.fc40.s390x 133/152
Installing : debugedit-5.0-12.fc40.s390x 134/152
Installing : curl-8.5.0-1.fc40.s390x 135/152
Installing : rpm-sequoia-1.5.0-2.fc40.s390x 136/152
Installing : rpm-libs-4.19.1-1.fc40.s390x 137/152
Running scriptlet: rpm-4.19.1-1.fc40.s390x 138/152
Installing : rpm-4.19.1-1.fc40.s390x 138/152
Installing : efi-srpm-macros-5-9.fc39.noarch 139/152
Installing : lua-srpm-macros-1-9.fc39.noarch 140/152
Installing : rpm-build-libs-4.19.1-1.fc40.s390x 141/152
Installing : ansible-srpm-macros-1-11.fc39.noarch 142/152
Installing : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 143/152
Installing : forge-srpm-macros-0.2.0-1.fc40.noarch 144/152
Installing : go-srpm-macros-3.3.1-1.fc40.noarch 145/152
Installing : python-srpm-macros-3.12-5.fc40.noarch 146/152
Installing : redhat-rpm-config-271-1.fc40.noarch 147/152
Installing : rpm-build-4.19.1-1.fc40.s390x 148/152
Installing : pyproject-srpm-macros-1.10.0-1.fc40.noarch 149/152
Installing : util-linux-2.39.2-1.fc40.s390x 150/152
Installing : which-2.21-40.fc39.s390x 151/152
Installing : info-7.1-1.fc40.s390x 152/152
Running scriptlet: filesystem-3.18-6.fc39.s390x 152/152
Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 152/152
Running scriptlet: authselect-libs-1.4.3-1.fc40.s390x 152/152
Running scriptlet: rpm-4.19.1-1.fc40.s390x 152/152
Running scriptlet: info-7.1-1.fc40.s390x 152/152
Installed:
alternatives-1.25-1.fc39.s390x
ansible-srpm-macros-1-11.fc39.noarch
audit-libs-3.1.2-5.fc40.s390x
authselect-1.4.3-1.fc40.s390x
authselect-libs-1.4.3-1.fc40.s390x
basesystem-11-18.fc39.noarch
bash-5.2.21-2.fc40.s390x
binutils-2.41-16.fc40.s390x
binutils-gold-2.41-16.fc40.s390x
bzip2-1.0.8-16.fc39.s390x
bzip2-libs-1.0.8-16.fc39.s390x
ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch
coreutils-9.4-1.fc40.s390x
coreutils-common-9.4-1.fc40.s390x
cpio-2.14-5.fc40.s390x
cracklib-2.9.11-2.fc39.s390x
crypto-policies-20231204-1.git1e3a2e4.fc40.noarch
curl-8.5.0-1.fc40.s390x
cyrus-sasl-lib-2.1.28-11.fc39.s390x
debugedit-5.0-12.fc40.s390x
diffutils-3.10-3.fc39.s390x
dwz-0.15-3.fc39.s390x
ed-1.19-4.fc39.s390x
efi-srpm-macros-5-9.fc39.noarch
elfutils-0.190-4.fc40.s390x
elfutils-debuginfod-client-0.190-4.fc40.s390x
elfutils-default-yama-scope-0.190-4.fc40.noarch
elfutils-libelf-0.190-4.fc40.s390x
elfutils-libs-0.190-4.fc40.s390x
fedora-gpg-keys-40-0.2.noarch
fedora-release-40-0.20.noarch
fedora-release-common-40-0.20.noarch
fedora-release-identity-basic-40-0.20.noarch
fedora-repos-40-0.2.noarch
fedora-repos-rawhide-40-0.2.noarch
file-5.45-1.fc40.s390x
file-libs-5.45-1.fc40.s390x
filesystem-3.18-6.fc39.s390x
findutils-1:4.9.0-6.fc40.s390x
fonts-srpm-macros-1:2.0.5-12.fc39.noarch
forge-srpm-macros-0.2.0-1.fc40.noarch
fpc-srpm-macros-1.3-8.fc39.noarch
gawk-5.2.2-2.fc39.s390x
gdb-minimal-14.1-1.fc40.s390x
gdbm-1:1.23-4.fc39.s390x
gdbm-libs-1:1.23-4.fc39.s390x
ghc-srpm-macros-1.6.1-3.fc40.noarch
glibc-2.38.9000-27.fc40.s390x
glibc-common-2.38.9000-27.fc40.s390x
glibc-gconv-extra-2.38.9000-27.fc40.s390x
glibc-minimal-langpack-2.38.9000-27.fc40.s390x
gmp-1:6.2.1-5.fc39.s390x
gnat-srpm-macros-6-3.fc39.noarch
go-srpm-macros-3.3.1-1.fc40.noarch
grep-3.11-5.fc40.s390x
gzip-1.12-6.fc39.s390x
info-7.1-1.fc40.s390x
jansson-2.13.1-7.fc39.s390x
kernel-srpm-macros-1.0-20.fc39.noarch
keyutils-libs-1.6.1-7.fc39.s390x
krb5-libs-1.21.2-2.fc40.s390x
libacl-2.3.1-11.fc40.s390x
libarchive-3.7.2-1.fc40.s390x
libattr-2.5.1-9.fc40.s390x
libblkid-2.39.2-1.fc40.s390x
libbrotli-1.1.0-1.fc40.s390x
libcap-2.69-1.fc40.s390x
libcap-ng-0.8.3-8.fc40.s390x
libcom_err-1.47.0-2.fc39.s390x
libcurl-8.5.0-1.fc40.s390x
libeconf-0.5.2-1.fc40.s390x
libevent-2.1.12-9.fc39.s390x
libfdisk-2.39.2-1.fc40.s390x
libffi-3.4.4-4.fc39.s390x
libgcc-13.2.1-6.fc40.s390x
libgomp-13.2.1-6.fc40.s390x
libidn2-2.3.4-3.fc39.s390x
libmount-2.39.2-1.fc40.s390x
libnghttp2-1.58.0-1.fc40.s390x
libnsl2-2.0.0-6.fc39.s390x
libpkgconf-1.9.5-2.fc39.s390x
libpsl-0.21.2-4.fc39.s390x
libpwquality-1.4.5-6.fc39.s390x
libselinux-3.6-0.rc2.1.fc40.s390x
libsemanage-3.6-0.rc2.1.fc40.s390x
libsepol-3.6-0.rc2.1.fc40.s390x
libsigsegv-2.14-5.fc39.s390x
libsmartcols-2.39.2-1.fc40.s390x
libssh-0.10.5-2.fc39.s390x
libssh-config-0.10.5-2.fc39.noarch
libstdc++-13.2.1-6.fc40.s390x
libtasn1-4.19.0-3.fc39.s390x
libtirpc-1.3.4-0.fc40.s390x
libunistring-1.1-5.fc40.s390x
libutempter-1.2.1-10.fc39.s390x
libuuid-2.39.2-1.fc40.s390x
libverto-0.3.2-6.fc39.s390x
libxcrypt-4.4.36-2.fc39.s390x
libxml2-2.12.3-1.fc40.s390x
libzstd-1.5.5-4.fc39.s390x
lua-libs-5.4.6-3.fc39.s390x
lua-srpm-macros-1-9.fc39.noarch
lz4-libs-1.9.4-4.fc39.s390x
mpfr-4.2.1-1.fc40.s390x
ncurses-base-6.4-8.20231001.fc40.noarch
ncurses-libs-6.4-8.20231001.fc40.s390x
ocaml-srpm-macros-9-1.fc40.noarch
openblas-srpm-macros-2-14.fc39.noarch
openldap-2.6.6-1.fc39.s390x
openssl-libs-1:3.1.4-1.fc40.s390x
p11-kit-0.25.3-1.fc40.s390x
p11-kit-trust-0.25.3-1.fc40.s390x
package-notes-srpm-macros-0.5-9.fc39.noarch
pam-1.5.3-8.fc40.s390x
pam-libs-1.5.3-8.fc40.s390x
patch-2.7.6-22.fc39.s390x
pcre2-10.42-2.fc40.s390x
pcre2-syntax-10.42-2.fc40.noarch
perl-srpm-macros-1-51.fc39.noarch
pkgconf-1.9.5-2.fc39.s390x
pkgconf-m4-1.9.5-2.fc39.noarch
pkgconf-pkg-config-1.9.5-2.fc39.s390x
popt-1.19-3.fc39.s390x
publicsuffix-list-dafsa-20230812-1.fc40.noarch
pyproject-srpm-macros-1.10.0-1.fc40.noarch
python-srpm-macros-3.12-5.fc40.noarch
qt5-srpm-macros-5.15.11-1.fc40.noarch
qt6-srpm-macros-6.6.1-1.fc40.noarch
readline-8.2-4.fc39.s390x
redhat-rpm-config-271-1.fc40.noarch
rpm-4.19.1-1.fc40.s390x
rpm-build-4.19.1-1.fc40.s390x
rpm-build-libs-4.19.1-1.fc40.s390x
rpm-libs-4.19.1-1.fc40.s390x
rpm-sequoia-1.5.0-2.fc40.s390x
rust-srpm-macros-25.2-2.fc40.noarch
sed-4.8-14.fc39.s390x
setup-2.14.5-1.fc40.noarch
shadow-utils-2:4.14.0-2.fc40.s390x
sqlite-libs-3.44.2-1.fc40.s390x
systemd-libs-255-1.fc40.s390x
tar-2:1.35-2.fc40.s390x
unzip-6.0-62.fc39.s390x
util-linux-2.39.2-1.fc40.s390x
util-linux-core-2.39.2-1.fc40.s390x
which-2.21-40.fc39.s390x
xxhash-libs-0.8.2-1.fc39.s390x
xz-5.4.5-1.fc40.s390x
xz-libs-5.4.5-1.fc40.s390x
zip-3.0-39.fc40.s390x
zlib-1.2.13-5.fc40.s390x
zstd-1.5.5-4.fc39.s390x
Complete!
Finish: installing minimal buildroot with dnf
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: alternatives-1.25-1.fc39.s390x
ansible-srpm-macros-1-11.fc39.noarch
audit-libs-3.1.2-5.fc40.s390x
authselect-1.4.3-1.fc40.s390x
authselect-libs-1.4.3-1.fc40.s390x
basesystem-11-18.fc39.noarch
bash-5.2.21-2.fc40.s390x
binutils-2.41-16.fc40.s390x
binutils-gold-2.41-16.fc40.s390x
bzip2-1.0.8-16.fc39.s390x
bzip2-libs-1.0.8-16.fc39.s390x
ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch
coreutils-9.4-1.fc40.s390x
coreutils-common-9.4-1.fc40.s390x
cpio-2.14-5.fc40.s390x
cracklib-2.9.11-2.fc39.s390x
crypto-policies-20231204-1.git1e3a2e4.fc40.noarch
curl-8.5.0-1.fc40.s390x
cyrus-sasl-lib-2.1.28-11.fc39.s390x
debugedit-5.0-12.fc40.s390x
diffutils-3.10-3.fc39.s390x
dwz-0.15-3.fc39.s390x
ed-1.19-4.fc39.s390x
efi-srpm-macros-5-9.fc39.noarch
elfutils-0.190-4.fc40.s390x
elfutils-debuginfod-client-0.190-4.fc40.s390x
elfutils-default-yama-scope-0.190-4.fc40.noarch
elfutils-libelf-0.190-4.fc40.s390x
elfutils-libs-0.190-4.fc40.s390x
fedora-gpg-keys-40-0.2.noarch
fedora-release-40-0.20.noarch
fedora-release-common-40-0.20.noarch
fedora-release-identity-basic-40-0.20.noarch
fedora-repos-40-0.2.noarch
fedora-repos-rawhide-40-0.2.noarch
file-5.45-1.fc40.s390x
file-libs-5.45-1.fc40.s390x
filesystem-3.18-6.fc39.s390x
findutils-4.9.0-6.fc40.s390x
fonts-srpm-macros-2.0.5-12.fc39.noarch
forge-srpm-macros-0.2.0-1.fc40.noarch
fpc-srpm-macros-1.3-8.fc39.noarch
gawk-5.2.2-2.fc39.s390x
gdb-minimal-14.1-1.fc40.s390x
gdbm-1.23-4.fc39.s390x
gdbm-libs-1.23-4.fc39.s390x
ghc-srpm-macros-1.6.1-3.fc40.noarch
glibc-2.38.9000-27.fc40.s390x
glibc-common-2.38.9000-27.fc40.s390x
glibc-gconv-extra-2.38.9000-27.fc40.s390x
glibc-minimal-langpack-2.38.9000-27.fc40.s390x
gmp-6.2.1-5.fc39.s390x
gnat-srpm-macros-6-3.fc39.noarch
go-srpm-macros-3.3.1-1.fc40.noarch
gpg-pubkey-18b8e74c-62f2920f
gpg-pubkey-a15b79cc-63d04c2c
grep-3.11-5.fc40.s390x
gzip-1.12-6.fc39.s390x
info-7.1-1.fc40.s390x
jansson-2.13.1-7.fc39.s390x
kernel-srpm-macros-1.0-20.fc39.noarch
keyutils-libs-1.6.1-7.fc39.s390x
krb5-libs-1.21.2-2.fc40.s390x
libacl-2.3.1-11.fc40.s390x
libarchive-3.7.2-1.fc40.s390x
libattr-2.5.1-9.fc40.s390x
libblkid-2.39.2-1.fc40.s390x
libbrotli-1.1.0-1.fc40.s390x
libcap-2.69-1.fc40.s390x
libcap-ng-0.8.3-8.fc40.s390x
libcom_err-1.47.0-2.fc39.s390x
libcurl-8.5.0-1.fc40.s390x
libeconf-0.5.2-1.fc40.s390x
libevent-2.1.12-9.fc39.s390x
libfdisk-2.39.2-1.fc40.s390x
libffi-3.4.4-4.fc39.s390x
libgcc-13.2.1-6.fc40.s390x
libgomp-13.2.1-6.fc40.s390x
libidn2-2.3.4-3.fc39.s390x
libmount-2.39.2-1.fc40.s390x
libnghttp2-1.58.0-1.fc40.s390x
libnsl2-2.0.0-6.fc39.s390x
libpkgconf-1.9.5-2.fc39.s390x
libpsl-0.21.2-4.fc39.s390x
libpwquality-1.4.5-6.fc39.s390x
libselinux-3.6-0.rc2.1.fc40.s390x
libsemanage-3.6-0.rc2.1.fc40.s390x
libsepol-3.6-0.rc2.1.fc40.s390x
libsigsegv-2.14-5.fc39.s390x
libsmartcols-2.39.2-1.fc40.s390x
libssh-0.10.5-2.fc39.s390x
libssh-config-0.10.5-2.fc39.noarch
libstdc++-13.2.1-6.fc40.s390x
libtasn1-4.19.0-3.fc39.s390x
libtirpc-1.3.4-0.fc40.s390x
libunistring-1.1-5.fc40.s390x
libutempter-1.2.1-10.fc39.s390x
libuuid-2.39.2-1.fc40.s390x
libverto-0.3.2-6.fc39.s390x
libxcrypt-4.4.36-2.fc39.s390x
libxml2-2.12.3-1.fc40.s390x
libzstd-1.5.5-4.fc39.s390x
lua-libs-5.4.6-3.fc39.s390x
lua-srpm-macros-1-9.fc39.noarch
lz4-libs-1.9.4-4.fc39.s390x
mpfr-4.2.1-1.fc40.s390x
ncurses-base-6.4-8.20231001.fc40.noarch
ncurses-libs-6.4-8.20231001.fc40.s390x
ocaml-srpm-macros-9-1.fc40.noarch
openblas-srpm-macros-2-14.fc39.noarch
openldap-2.6.6-1.fc39.s390x
openssl-libs-3.1.4-1.fc40.s390x
p11-kit-0.25.3-1.fc40.s390x
p11-kit-trust-0.25.3-1.fc40.s390x
package-notes-srpm-macros-0.5-9.fc39.noarch
pam-1.5.3-8.fc40.s390x
pam-libs-1.5.3-8.fc40.s390x
patch-2.7.6-22.fc39.s390x
pcre2-10.42-2.fc40.s390x
pcre2-syntax-10.42-2.fc40.noarch
perl-srpm-macros-1-51.fc39.noarch
pkgconf-1.9.5-2.fc39.s390x
pkgconf-m4-1.9.5-2.fc39.noarch
pkgconf-pkg-config-1.9.5-2.fc39.s390x
popt-1.19-3.fc39.s390x
publicsuffix-list-dafsa-20230812-1.fc40.noarch
pyproject-srpm-macros-1.10.0-1.fc40.noarch
python-srpm-macros-3.12-5.fc40.noarch
qt5-srpm-macros-5.15.11-1.fc40.noarch
qt6-srpm-macros-6.6.1-1.fc40.noarch
readline-8.2-4.fc39.s390x
redhat-rpm-config-271-1.fc40.noarch
rpm-4.19.1-1.fc40.s390x
rpm-build-4.19.1-1.fc40.s390x
rpm-build-libs-4.19.1-1.fc40.s390x
rpm-libs-4.19.1-1.fc40.s390x
rpm-sequoia-1.5.0-2.fc40.s390x
rust-srpm-macros-25.2-2.fc40.noarch
sed-4.8-14.fc39.s390x
setup-2.14.5-1.fc40.noarch
shadow-utils-4.14.0-2.fc40.s390x
sqlite-libs-3.44.2-1.fc40.s390x
systemd-libs-255-1.fc40.s390x
tar-1.35-2.fc40.s390x
unzip-6.0-62.fc39.s390x
util-linux-2.39.2-1.fc40.s390x
util-linux-core-2.39.2-1.fc40.s390x
which-2.21-40.fc39.s390x
xxhash-libs-0.8.2-1.fc39.s390x
xz-5.4.5-1.fc40.s390x
xz-libs-5.4.5-1.fc40.s390x
zip-3.0-39.fc40.s390x
zlib-1.2.13-5.fc40.s390x
zstd-1.5.5-4.fc39.s390x
Start: buildsrpm
Start: rpmbuild -bs
warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1689811200
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-16.fc40.src.rpm
RPM build warnings:
%patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Finish: rpmbuild -bs
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-s390x-1702482417.624082/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-s390x-1702482417.624082/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-s390x-1702482417.624082/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-cux355ml/mmseq/mmseq.spec) Config(child) 2 minutes 0 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-16.fc40.src.rpm) Config(fedora-rawhide-s390x)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1702482417.624082/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1702482417.624082/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1702482417.624082/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Finish: chroot init
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
rpm-4.19.1-1.fc40.s390x
rpm-sequoia-1.5.0-2.fc40.s390x
python3-dnf-4.18.2-1.fc40.noarch
python3-dnf-plugins-core-4.4.4-1.fc40.noarch
yum-4.18.2-1.fc40.noarch
Start: build phase for mmseq-1.0.11-16.fc40.src.rpm
Start: build setup for mmseq-1.0.11-16.fc40.src.rpm
warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1689811200
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-16.fc40.src.rpm
RPM build warnings:
%patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 291 B/s | 1.5 kB 00:05
fedora 1.1 kB/s | 5.6 kB 00:05
Dependencies resolved.
================================================================================
Package Arch Version Repository Size
================================================================================
Installing:
armadillo-devel s390x 10.8.2-5.fc39 fedora 2.2 M
boost-devel s390x 1.83.0-0.fc40 copr_base 12 M
flexiblas-devel s390x 3.3.1-5.fc39 fedora 117 k
gcc-c++ s390x 13.2.1-6.fc40 fedora 11 M
gsl-devel s390x 2.7.1-5.fc39 fedora 653 k
htslib-devel s390x 1.15.1-3.fc39 fedora 105 k
make s390x 1:4.4.1-2.fc39 fedora 605 k
perl-generators noarch 1.16-3.fc39 fedora 16 k
zlib-devel s390x 1.2.13-5.fc40 fedora 44 k
Installing dependencies:
SuperLU s390x 6.0.1-1.fc40 fedora 238 k
SuperLU-devel s390x 6.0.1-1.fc40 fedora 27 k
annobin-docs noarch 12.33-1.fc40 fedora 91 k
annobin-plugin-gcc s390x 12.33-1.fc40 fedora 958 k
armadillo s390x 10.8.2-5.fc39 fedora 39 k
arpack s390x 3.9.1-1.fc40 fedora 224 k
arpack-devel s390x 3.9.1-1.fc40 fedora 22 k
autoconf noarch 2.71-7.fc40 fedora 733 k
automake noarch 1.16.5-14.fc40 fedora 697 k
boost s390x 1.83.0-0.fc40 copr_base 14 k
boost-atomic s390x 1.83.0-0.fc40 copr_base 19 k
boost-chrono s390x 1.83.0-0.fc40 copr_base 26 k
boost-container s390x 1.83.0-0.fc40 copr_base 41 k
boost-context s390x 1.83.0-0.fc40 copr_base 17 k
boost-contract s390x 1.83.0-0.fc40 copr_base 45 k
boost-coroutine s390x 1.83.0-0.fc40 copr_base 21 k
boost-date-time s390x 1.83.0-0.fc40 copr_base 16 k
boost-fiber s390x 1.83.0-0.fc40 copr_base 43 k
boost-filesystem s390x 1.83.0-0.fc40 copr_base 68 k
boost-graph s390x 1.83.0-0.fc40 copr_base 159 k
boost-iostreams s390x 1.83.0-0.fc40 copr_base 41 k
boost-json s390x 1.83.0-0.fc40 copr_base 154 k
boost-locale s390x 1.83.0-0.fc40 copr_base 215 k
boost-log s390x 1.83.0-0.fc40 copr_base 498 k
boost-math s390x 1.83.0-0.fc40 copr_base 238 k
boost-nowide s390x 1.83.0-0.fc40 copr_base 21 k
boost-numpy3 s390x 1.83.0-0.fc40 copr_base 30 k
boost-program-options s390x 1.83.0-0.fc40 copr_base 111 k
boost-python3 s390x 1.83.0-0.fc40 copr_base 95 k
boost-random s390x 1.83.0-0.fc40 copr_base 24 k
boost-regex s390x 1.83.0-0.fc40 copr_base 123 k
boost-serialization s390x 1.83.0-0.fc40 copr_base 136 k
boost-stacktrace s390x 1.83.0-0.fc40 copr_base 30 k
boost-system s390x 1.83.0-0.fc40 copr_base 16 k
boost-test s390x 1.83.0-0.fc40 copr_base 250 k
boost-thread s390x 1.83.0-0.fc40 copr_base 62 k
boost-timer s390x 1.83.0-0.fc40 copr_base 22 k
boost-type_erasure s390x 1.83.0-0.fc40 copr_base 33 k
boost-wave s390x 1.83.0-0.fc40 copr_base 245 k
cmake-filesystem s390x 3.27.7-1.fc40 fedora 19 k
cpp s390x 13.2.1-6.fc40 fedora 8.8 M
emacs-filesystem noarch 1:29.1-14.fc40 fedora 7.4 k
expat s390x 2.5.0-3.fc39 fedora 114 k
flexiblas s390x 3.3.1-5.fc39 fedora 33 k
flexiblas-netlib s390x 3.3.1-5.fc39 fedora 3.6 M
flexiblas-netlib64 s390x 3.3.1-5.fc39 fedora 3.5 M
flexiblas-openblas-openmp s390x 3.3.1-5.fc39 fedora 17 k
flexiblas-openblas-openmp64 s390x 3.3.1-5.fc39 fedora 17 k
gc s390x 8.2.2-4.fc39 fedora 114 k
gcc s390x 13.2.1-6.fc40 fedora 28 M
gcc-gfortran s390x 13.2.1-6.fc40 fedora 10 M
gcc-plugin-annobin s390x 13.2.1-6.fc40 fedora 49 k
glibc-devel s390x 2.38.9000-27.fc40 fedora 110 k
glibc-headers-s390 noarch 2.38.9000-27.fc40 fedora 578 k
groff-base s390x 1.23.0-3.fc40 fedora 1.2 M
gsl s390x 2.7.1-5.fc39 fedora 1.2 M
guile22 s390x 2.2.7-9.fc39 fedora 6.5 M
hdf5 s390x 1.12.1-15.fc40 fedora 2.4 M
hdf5-devel s390x 1.12.1-15.fc40 fedora 1.3 M
htslib s390x 1.15.1-3.fc39 fedora 533 k
kernel-headers s390x 6.7.0-0.rc5.41.fc40 fedora 1.6 M
libaec s390x 1.0.6-5.fc39 fedora 45 k
libaec-devel s390x 1.0.6-5.fc39 fedora 12 k
libasan s390x 13.2.1-6.fc40 fedora 510 k
libatomic s390x 13.2.1-6.fc40 fedora 37 k
libb2 s390x 0.98.1-9.fc39 fedora 27 k
libgfortran s390x 13.2.1-6.fc40 fedora 580 k
libicu s390x 73.2-2.fc39 fedora 11 M
libicu-devel s390x 73.2-2.fc39 fedora 925 k
libmpc s390x 1.3.1-3.fc39 fedora 73 k
libstdc++-devel s390x 13.2.1-6.fc40 fedora 2.6 M
libtool-ltdl s390x 2.4.7-8.fc40 fedora 37 k
libubsan s390x 13.2.1-6.fc40 fedora 222 k
libxcrypt-devel s390x 4.4.36-2.fc39 fedora 30 k
m4 s390x 1.4.19-7.fc40 fedora 313 k
metis s390x 5.1.0.3-2.fc39 fedora 603 k
mpdecimal s390x 2.5.1-7.fc39 fedora 100 k
ncurses s390x 6.4-8.20231001.fc40 fedora 427 k
openblas s390x 0.3.25-1.fc40 fedora 38 k
openblas-openmp s390x 0.3.25-1.fc40 fedora 4.3 M
openblas-openmp64 s390x 0.3.25-1.fc40 fedora 4.2 M
perl-AutoLoader noarch 5.74-503.fc40 fedora 21 k
perl-B s390x 1.88-503.fc40 fedora 178 k
perl-Carp noarch 1.54-500.fc39 fedora 29 k
perl-Class-Struct noarch 0.68-503.fc40 fedora 22 k
perl-Data-Dumper s390x 2.188-501.fc39 fedora 57 k
perl-Digest noarch 1.20-500.fc39 fedora 25 k
perl-Digest-MD5 s390x 2.58-501.fc40 fedora 35 k
perl-DynaLoader s390x 1.54-503.fc40 fedora 26 k
perl-Encode s390x 4:3.20-501.fc40 fedora 1.7 M
perl-Errno s390x 1.37-503.fc40 fedora 15 k
perl-Exporter noarch 5.77-500.fc39 fedora 31 k
perl-Fcntl s390x 1.15-503.fc40 fedora 21 k
perl-Fedora-VSP noarch 0.001-32.fc39 fedora 23 k
perl-File-Basename noarch 2.86-503.fc40 fedora 17 k
perl-File-Compare noarch 1.100.700-503.fc40 fedora 13 k
perl-File-Copy noarch 2.41-503.fc40 fedora 20 k
perl-File-Find noarch 1.43-503.fc40 fedora 26 k
perl-File-Path noarch 2.18-501.fc40 fedora 35 k
perl-File-Temp noarch 1:0.231.100-501.fc40 fedora 59 k
perl-File-stat noarch 1.13-503.fc40 fedora 17 k
perl-FileHandle noarch 2.05-503.fc40 fedora 16 k
perl-Getopt-Long noarch 1:2.57-1.fc40 fedora 63 k
perl-Getopt-Std noarch 1.13-503.fc40 fedora 16 k
perl-HTTP-Tiny noarch 0.088-3.fc39 fedora 56 k
perl-IO s390x 1.52-503.fc40 fedora 82 k
perl-IO-Socket-IP noarch 0.42-1.fc39 fedora 42 k
perl-IO-Socket-SSL noarch 2.084-1.fc40 fedora 225 k
perl-IPC-Open3 noarch 1.22-503.fc40 fedora 22 k
perl-MIME-Base64 s390x 3.16-501.fc40 fedora 30 k
perl-Mozilla-CA noarch 20230821-1.fc40 fedora 13 k
perl-Net-SSLeay s390x 1.92-10.fc39 fedora 363 k
perl-POSIX s390x 2.13-503.fc40 fedora 98 k
perl-PathTools s390x 3.89-500.fc39 fedora 87 k
perl-Pod-Escapes noarch 1:1.07-501.fc40 fedora 19 k
perl-Pod-Perldoc noarch 3.28.01-501.fc39 fedora 86 k
perl-Pod-Simple noarch 1:3.45-4.fc39 fedora 218 k
perl-Pod-Usage noarch 4:2.03-500.fc39 fedora 39 k
perl-Scalar-List-Utils s390x 5:1.63-500.fc39 fedora 74 k
perl-SelectSaver noarch 1.02-503.fc40 fedora 12 k
perl-Socket s390x 4:2.037-3.fc39 fedora 55 k
perl-Storable s390x 1:3.32-500.fc39 fedora 100 k
perl-Symbol noarch 1.09-503.fc40 fedora 14 k
perl-Term-ANSIColor noarch 5.01-502.fc40 fedora 47 k
perl-Term-Cap noarch 1.18-500.fc39 fedora 22 k
perl-Text-ParseWords noarch 3.31-500.fc39 fedora 16 k
perl-Text-Tabs+Wrap noarch 2023.0511-3.fc39 fedora 22 k
perl-Thread-Queue noarch 3.14-501.fc40 fedora 21 k
perl-Time-Local noarch 2:1.350-3.fc39 fedora 34 k
perl-URI noarch 5.21-1.fc40 fedora 125 k
perl-base noarch 2.27-503.fc40 fedora 16 k
perl-constant noarch 1.33-501.fc39 fedora 22 k
perl-if noarch 0.61.000-503.fc40 fedora 14 k
perl-interpreter s390x 4:5.38.2-503.fc40 fedora 72 k
perl-libnet noarch 3.15-501.fc39 fedora 129 k
perl-libs s390x 4:5.38.2-503.fc40 fedora 2.5 M
perl-locale noarch 1.10-503.fc40 fedora 14 k
perl-macros noarch 4:5.38.2-503.fc40 fedora 13 k
perl-mro s390x 1.28-503.fc40 fedora 29 k
perl-overload noarch 1.37-503.fc40 fedora 46 k
perl-overloading noarch 0.02-503.fc40 fedora 13 k
perl-parent noarch 1:0.241-500.fc39 fedora 14 k
perl-podlators noarch 1:5.01-500.fc39 fedora 125 k
perl-threads s390x 1:2.36-500.fc39 fedora 58 k
perl-threads-shared s390x 1.68-500.fc39 fedora 45 k
perl-vars noarch 1.05-503.fc40 fedora 13 k
python-pip-wheel noarch 23.2.1-1.fc39 fedora 1.5 M
python3 s390x 3.12.1-1.fc40 fedora 26 k
python3-libs s390x 3.12.1-1.fc40 fedora 9.2 M
python3-numpy s390x 1:1.26.0-2.fc40 fedora 7.1 M
tzdata noarch 2023c-4.fc40 fedora 717 k
Transaction Summary
================================================================================
Install 160 Packages
Total download size: 154 M
Installed size: 622 M
Downloading Packages:
(1/160): boost-atomic-1.83.0-0.fc40.s390x.rpm 192 kB/s | 19 kB 00:00
(2/160): boost-1.83.0-0.fc40.s390x.rpm 124 kB/s | 14 kB 00:00
(3/160): boost-chrono-1.83.0-0.fc40.s390x.rpm 206 kB/s | 26 kB 00:00
(4/160): boost-container-1.83.0-0.fc40.s390x.rp 913 kB/s | 41 kB 00:00
(5/160): boost-context-1.83.0-0.fc40.s390x.rpm 340 kB/s | 17 kB 00:00
(6/160): boost-contract-1.83.0-0.fc40.s390x.rpm 840 kB/s | 45 kB 00:00
(7/160): boost-coroutine-1.83.0-0.fc40.s390x.rp 553 kB/s | 21 kB 00:00
(8/160): boost-date-time-1.83.0-0.fc40.s390x.rp 472 kB/s | 16 kB 00:00
(9/160): boost-fiber-1.83.0-0.fc40.s390x.rpm 344 kB/s | 43 kB 00:00
(10/160): boost-filesystem-1.83.0-0.fc40.s390x. 614 kB/s | 68 kB 00:00
(11/160): boost-graph-1.83.0-0.fc40.s390x.rpm 1.9 MB/s | 159 kB 00:00
(12/160): boost-iostreams-1.83.0-0.fc40.s390x.r 521 kB/s | 41 kB 00:00
(13/160): boost-devel-1.83.0-0.fc40.s390x.rpm 43 MB/s | 12 MB 00:00
(14/160): boost-json-1.83.0-0.fc40.s390x.rpm 2.4 MB/s | 154 kB 00:00
(15/160): boost-locale-1.83.0-0.fc40.s390x.rpm 3.3 MB/s | 215 kB 00:00
(16/160): boost-nowide-1.83.0-0.fc40.s390x.rpm 663 kB/s | 21 kB 00:00
(17/160): boost-log-1.83.0-0.fc40.s390x.rpm 14 MB/s | 498 kB 00:00
(18/160): boost-math-1.83.0-0.fc40.s390x.rpm 6.7 MB/s | 238 kB 00:00
(19/160): boost-numpy3-1.83.0-0.fc40.s390x.rpm 941 kB/s | 30 kB 00:00
(20/160): boost-program-options-1.83.0-0.fc40.s 3.3 MB/s | 111 kB 00:00
(21/160): boost-python3-1.83.0-0.fc40.s390x.rpm 2.9 MB/s | 95 kB 00:00
(22/160): boost-random-1.83.0-0.fc40.s390x.rpm 744 kB/s | 24 kB 00:00
(23/160): boost-regex-1.83.0-0.fc40.s390x.rpm 3.6 MB/s | 123 kB 00:00
(24/160): boost-serialization-1.83.0-0.fc40.s39 4.0 MB/s | 136 kB 00:00
(25/160): boost-stacktrace-1.83.0-0.fc40.s390x. 934 kB/s | 30 kB 00:00
(26/160): boost-system-1.83.0-0.fc40.s390x.rpm 508 kB/s | 16 kB 00:00
(27/160): boost-test-1.83.0-0.fc40.s390x.rpm 7.1 MB/s | 250 kB 00:00
(28/160): boost-thread-1.83.0-0.fc40.s390x.rpm 1.9 MB/s | 62 kB 00:00
(29/160): boost-timer-1.83.0-0.fc40.s390x.rpm 692 kB/s | 22 kB 00:00
(30/160): boost-type_erasure-1.83.0-0.fc40.s390 1.0 MB/s | 33 kB 00:00
(31/160): boost-wave-1.83.0-0.fc40.s390x.rpm 7.3 MB/s | 245 kB 00:00
(32/160): SuperLU-devel-6.0.1-1.fc40.s390x.rpm 115 kB/s | 27 kB 00:00
(33/160): annobin-docs-12.33-1.fc40.noarch.rpm 306 kB/s | 91 kB 00:00
(34/160): armadillo-10.8.2-5.fc39.s390x.rpm 406 kB/s | 39 kB 00:00
(35/160): SuperLU-6.0.1-1.fc40.s390x.rpm 555 kB/s | 238 kB 00:00
(36/160): arpack-3.9.1-1.fc40.s390x.rpm 1.7 MB/s | 224 kB 00:00
(37/160): arpack-devel-3.9.1-1.fc40.s390x.rpm 283 kB/s | 22 kB 00:00
(38/160): annobin-plugin-gcc-12.33-1.fc40.s390x 2.3 MB/s | 958 kB 00:00
(39/160): automake-1.16.5-14.fc40.noarch.rpm 6.8 MB/s | 697 kB 00:00
(40/160): cmake-filesystem-3.27.7-1.fc40.s390x. 292 kB/s | 19 kB 00:00
(41/160): autoconf-2.71-7.fc40.noarch.rpm 3.9 MB/s | 733 kB 00:00
(42/160): armadillo-devel-10.8.2-5.fc39.s390x.r 4.8 MB/s | 2.2 MB 00:00
(43/160): emacs-filesystem-29.1-14.fc40.noarch. 113 kB/s | 7.4 kB 00:00
(44/160): expat-2.5.0-3.fc39.s390x.rpm 1.8 MB/s | 114 kB 00:00
(45/160): flexiblas-3.3.1-5.fc39.s390x.rpm 507 kB/s | 33 kB 00:00
(46/160): flexiblas-devel-3.3.1-5.fc39.s390x.rp 1.5 MB/s | 117 kB 00:00
(47/160): flexiblas-netlib64-3.3.1-5.fc39.s390x 23 MB/s | 3.5 MB 00:00
(48/160): flexiblas-netlib-3.3.1-5.fc39.s390x.r 16 MB/s | 3.6 MB 00:00
(49/160): cpp-13.2.1-6.fc40.s390x.rpm 22 MB/s | 8.8 MB 00:00
(50/160): flexiblas-openblas-openmp-3.3.1-5.fc3 294 kB/s | 17 kB 00:00
(51/160): flexiblas-openblas-openmp64-3.3.1-5.f 223 kB/s | 17 kB 00:00
(52/160): gc-8.2.2-4.fc39.s390x.rpm 1.7 MB/s | 114 kB 00:00
(53/160): gcc-c++-13.2.1-6.fc40.s390x.rpm 34 MB/s | 11 MB 00:00
(54/160): gcc-gfortran-13.2.1-6.fc40.s390x.rpm 29 MB/s | 10 MB 00:00
(55/160): gcc-plugin-annobin-13.2.1-6.fc40.s390 771 kB/s | 49 kB 00:00
(56/160): glibc-devel-2.38.9000-27.fc40.s390x.r 1.6 MB/s | 110 kB 00:00
(57/160): glibc-headers-s390-2.38.9000-27.fc40. 7.8 MB/s | 578 kB 00:00
(58/160): groff-base-1.23.0-3.fc40.s390x.rpm 12 MB/s | 1.2 MB 00:00
(59/160): gsl-2.7.1-5.fc39.s390x.rpm 13 MB/s | 1.2 MB 00:00
(60/160): gsl-devel-2.7.1-5.fc39.s390x.rpm 5.8 MB/s | 653 kB 00:00
(61/160): gcc-13.2.1-6.fc40.s390x.rpm 36 MB/s | 28 MB 00:00
(62/160): guile22-2.2.7-9.fc39.s390x.rpm 31 MB/s | 6.5 MB 00:00
(63/160): hdf5-1.12.1-15.fc40.s390x.rpm 16 MB/s | 2.4 MB 00:00
(64/160): hdf5-devel-1.12.1-15.fc40.s390x.rpm 13 MB/s | 1.3 MB 00:00
(65/160): htslib-1.15.1-3.fc39.s390x.rpm 3.6 MB/s | 533 kB 00:00
(66/160): htslib-devel-1.15.1-3.fc39.s390x.rpm 850 kB/s | 105 kB 00:00
(67/160): kernel-headers-6.7.0-0.rc5.41.fc40.s3 16 MB/s | 1.6 MB 00:00
(68/160): libaec-1.0.6-5.fc39.s390x.rpm 633 kB/s | 45 kB 00:00
(69/160): libaec-devel-1.0.6-5.fc39.s390x.rpm 147 kB/s | 12 kB 00:00
(70/160): libasan-13.2.1-6.fc40.s390x.rpm 6.8 MB/s | 510 kB 00:00
(71/160): libatomic-13.2.1-6.fc40.s390x.rpm 620 kB/s | 37 kB 00:00
(72/160): libb2-0.98.1-9.fc39.s390x.rpm 413 kB/s | 27 kB 00:00
(73/160): libgfortran-13.2.1-6.fc40.s390x.rpm 7.5 MB/s | 580 kB 00:00
(74/160): libicu-devel-73.2-2.fc39.s390x.rpm 10 MB/s | 925 kB 00:00
(75/160): libmpc-1.3.1-3.fc39.s390x.rpm 1.1 MB/s | 73 kB 00:00
(76/160): libtool-ltdl-2.4.7-8.fc40.s390x.rpm 585 kB/s | 37 kB 00:00
(77/160): libstdc++-devel-13.2.1-6.fc40.s390x.r 19 MB/s | 2.6 MB 00:00
(78/160): libubsan-13.2.1-6.fc40.s390x.rpm 3.2 MB/s | 222 kB 00:00
(79/160): libxcrypt-devel-4.4.36-2.fc39.s390x.r 455 kB/s | 30 kB 00:00
(80/160): libicu-73.2-2.fc39.s390x.rpm 32 MB/s | 11 MB 00:00
(81/160): m4-1.4.19-7.fc40.s390x.rpm 4.4 MB/s | 313 kB 00:00
(82/160): make-4.4.1-2.fc39.s390x.rpm 7.7 MB/s | 605 kB 00:00
(83/160): mpdecimal-2.5.1-7.fc39.s390x.rpm 1.5 MB/s | 100 kB 00:00
(84/160): metis-5.1.0.3-2.fc39.s390x.rpm 6.2 MB/s | 603 kB 00:00
(85/160): ncurses-6.4-8.20231001.fc40.s390x.rpm 5.7 MB/s | 427 kB 00:00
(86/160): openblas-0.3.25-1.fc40.s390x.rpm 591 kB/s | 38 kB 00:00
(87/160): perl-AutoLoader-5.74-503.fc40.noarch. 335 kB/s | 21 kB 00:00
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(116/160): perl-IPC-Open3-1.22-503.fc40.noarch. 349 kB/s | 22 kB 00:00
(117/160): perl-MIME-Base64-3.16-501.fc40.s390x 450 kB/s | 30 kB 00:00
(118/160): perl-Mozilla-CA-20230821-1.fc40.noar 230 kB/s | 13 kB 00:00
(119/160): perl-Net-SSLeay-1.92-10.fc39.s390x.r 5.0 MB/s | 363 kB 00:00
(120/160): perl-PathTools-3.89-500.fc39.s390x.r 1.4 MB/s | 87 kB 00:00
(121/160): perl-POSIX-2.13-503.fc40.s390x.rpm 1.3 MB/s | 98 kB 00:00
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(129/160): perl-Storable-3.32-500.fc39.s390x.rp 1.6 MB/s | 100 kB 00:00
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(131/160): perl-Term-ANSIColor-5.01-502.fc40.no 746 kB/s | 47 kB 00:00
(132/160): perl-Term-Cap-1.18-500.fc39.noarch.r 372 kB/s | 22 kB 00:00
(133/160): perl-Text-ParseWords-3.31-500.fc39.n 234 kB/s | 16 kB 00:00
(134/160): perl-Thread-Queue-3.14-501.fc40.noar 359 kB/s | 21 kB 00:00
(135/160): perl-Text-Tabs+Wrap-2023.0511-3.fc39 335 kB/s | 22 kB 00:00
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(140/160): perl-constant-1.33-501.fc39.noarch.r 337 kB/s | 22 kB 00:00
(141/160): perl-if-0.61.000-503.fc40.noarch.rpm 225 kB/s | 14 kB 00:00
(142/160): perl-interpreter-5.38.2-503.fc40.s39 1.2 MB/s | 72 kB 00:00
(143/160): perl-libnet-3.15-501.fc39.noarch.rpm 1.7 MB/s | 129 kB 00:00
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(146/160): perl-macros-5.38.2-503.fc40.noarch.r 194 kB/s | 13 kB 00:00
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(151/160): perl-podlators-5.01-500.fc39.noarch. 1.9 MB/s | 125 kB 00:00
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(160/160): zlib-devel-1.2.13-5.fc40.s390x.rpm 659 kB/s | 44 kB 00:00
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Total 15 MB/s | 154 MB 00:10
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Installed:
SuperLU-6.0.1-1.fc40.s390x
SuperLU-devel-6.0.1-1.fc40.s390x
annobin-docs-12.33-1.fc40.noarch
annobin-plugin-gcc-12.33-1.fc40.s390x
armadillo-10.8.2-5.fc39.s390x
armadillo-devel-10.8.2-5.fc39.s390x
arpack-3.9.1-1.fc40.s390x
arpack-devel-3.9.1-1.fc40.s390x
autoconf-2.71-7.fc40.noarch
automake-1.16.5-14.fc40.noarch
boost-1.83.0-0.fc40.s390x
boost-atomic-1.83.0-0.fc40.s390x
boost-chrono-1.83.0-0.fc40.s390x
boost-container-1.83.0-0.fc40.s390x
boost-context-1.83.0-0.fc40.s390x
boost-contract-1.83.0-0.fc40.s390x
boost-coroutine-1.83.0-0.fc40.s390x
boost-date-time-1.83.0-0.fc40.s390x
boost-devel-1.83.0-0.fc40.s390x
boost-fiber-1.83.0-0.fc40.s390x
boost-filesystem-1.83.0-0.fc40.s390x
boost-graph-1.83.0-0.fc40.s390x
boost-iostreams-1.83.0-0.fc40.s390x
boost-json-1.83.0-0.fc40.s390x
boost-locale-1.83.0-0.fc40.s390x
boost-log-1.83.0-0.fc40.s390x
boost-math-1.83.0-0.fc40.s390x
boost-nowide-1.83.0-0.fc40.s390x
boost-numpy3-1.83.0-0.fc40.s390x
boost-program-options-1.83.0-0.fc40.s390x
boost-python3-1.83.0-0.fc40.s390x
boost-random-1.83.0-0.fc40.s390x
boost-regex-1.83.0-0.fc40.s390x
boost-serialization-1.83.0-0.fc40.s390x
boost-stacktrace-1.83.0-0.fc40.s390x
boost-system-1.83.0-0.fc40.s390x
boost-test-1.83.0-0.fc40.s390x
boost-thread-1.83.0-0.fc40.s390x
boost-timer-1.83.0-0.fc40.s390x
boost-type_erasure-1.83.0-0.fc40.s390x
boost-wave-1.83.0-0.fc40.s390x
cmake-filesystem-3.27.7-1.fc40.s390x
cpp-13.2.1-6.fc40.s390x
emacs-filesystem-1:29.1-14.fc40.noarch
expat-2.5.0-3.fc39.s390x
flexiblas-3.3.1-5.fc39.s390x
flexiblas-devel-3.3.1-5.fc39.s390x
flexiblas-netlib-3.3.1-5.fc39.s390x
flexiblas-netlib64-3.3.1-5.fc39.s390x
flexiblas-openblas-openmp-3.3.1-5.fc39.s390x
flexiblas-openblas-openmp64-3.3.1-5.fc39.s390x
gc-8.2.2-4.fc39.s390x
gcc-13.2.1-6.fc40.s390x
gcc-c++-13.2.1-6.fc40.s390x
gcc-gfortran-13.2.1-6.fc40.s390x
gcc-plugin-annobin-13.2.1-6.fc40.s390x
glibc-devel-2.38.9000-27.fc40.s390x
glibc-headers-s390-2.38.9000-27.fc40.noarch
groff-base-1.23.0-3.fc40.s390x
gsl-2.7.1-5.fc39.s390x
gsl-devel-2.7.1-5.fc39.s390x
guile22-2.2.7-9.fc39.s390x
hdf5-1.12.1-15.fc40.s390x
hdf5-devel-1.12.1-15.fc40.s390x
htslib-1.15.1-3.fc39.s390x
htslib-devel-1.15.1-3.fc39.s390x
kernel-headers-6.7.0-0.rc5.41.fc40.s390x
libaec-1.0.6-5.fc39.s390x
libaec-devel-1.0.6-5.fc39.s390x
libasan-13.2.1-6.fc40.s390x
libatomic-13.2.1-6.fc40.s390x
libb2-0.98.1-9.fc39.s390x
libgfortran-13.2.1-6.fc40.s390x
libicu-73.2-2.fc39.s390x
libicu-devel-73.2-2.fc39.s390x
libmpc-1.3.1-3.fc39.s390x
libstdc++-devel-13.2.1-6.fc40.s390x
libtool-ltdl-2.4.7-8.fc40.s390x
libubsan-13.2.1-6.fc40.s390x
libxcrypt-devel-4.4.36-2.fc39.s390x
m4-1.4.19-7.fc40.s390x
make-1:4.4.1-2.fc39.s390x
metis-5.1.0.3-2.fc39.s390x
mpdecimal-2.5.1-7.fc39.s390x
ncurses-6.4-8.20231001.fc40.s390x
openblas-0.3.25-1.fc40.s390x
openblas-openmp-0.3.25-1.fc40.s390x
openblas-openmp64-0.3.25-1.fc40.s390x
perl-AutoLoader-5.74-503.fc40.noarch
perl-B-1.88-503.fc40.s390x
perl-Carp-1.54-500.fc39.noarch
perl-Class-Struct-0.68-503.fc40.noarch
perl-Data-Dumper-2.188-501.fc39.s390x
perl-Digest-1.20-500.fc39.noarch
perl-Digest-MD5-2.58-501.fc40.s390x
perl-DynaLoader-1.54-503.fc40.s390x
perl-Encode-4:3.20-501.fc40.s390x
perl-Errno-1.37-503.fc40.s390x
perl-Exporter-5.77-500.fc39.noarch
perl-Fcntl-1.15-503.fc40.s390x
perl-Fedora-VSP-0.001-32.fc39.noarch
perl-File-Basename-2.86-503.fc40.noarch
perl-File-Compare-1.100.700-503.fc40.noarch
perl-File-Copy-2.41-503.fc40.noarch
perl-File-Find-1.43-503.fc40.noarch
perl-File-Path-2.18-501.fc40.noarch
perl-File-Temp-1:0.231.100-501.fc40.noarch
perl-File-stat-1.13-503.fc40.noarch
perl-FileHandle-2.05-503.fc40.noarch
perl-Getopt-Long-1:2.57-1.fc40.noarch
perl-Getopt-Std-1.13-503.fc40.noarch
perl-HTTP-Tiny-0.088-3.fc39.noarch
perl-IO-1.52-503.fc40.s390x
perl-IO-Socket-IP-0.42-1.fc39.noarch
perl-IO-Socket-SSL-2.084-1.fc40.noarch
perl-IPC-Open3-1.22-503.fc40.noarch
perl-MIME-Base64-3.16-501.fc40.s390x
perl-Mozilla-CA-20230821-1.fc40.noarch
perl-Net-SSLeay-1.92-10.fc39.s390x
perl-POSIX-2.13-503.fc40.s390x
perl-PathTools-3.89-500.fc39.s390x
perl-Pod-Escapes-1:1.07-501.fc40.noarch
perl-Pod-Perldoc-3.28.01-501.fc39.noarch
perl-Pod-Simple-1:3.45-4.fc39.noarch
perl-Pod-Usage-4:2.03-500.fc39.noarch
perl-Scalar-List-Utils-5:1.63-500.fc39.s390x
perl-SelectSaver-1.02-503.fc40.noarch
perl-Socket-4:2.037-3.fc39.s390x
perl-Storable-1:3.32-500.fc39.s390x
perl-Symbol-1.09-503.fc40.noarch
perl-Term-ANSIColor-5.01-502.fc40.noarch
perl-Term-Cap-1.18-500.fc39.noarch
perl-Text-ParseWords-3.31-500.fc39.noarch
perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch
perl-Thread-Queue-3.14-501.fc40.noarch
perl-Time-Local-2:1.350-3.fc39.noarch
perl-URI-5.21-1.fc40.noarch
perl-base-2.27-503.fc40.noarch
perl-constant-1.33-501.fc39.noarch
perl-generators-1.16-3.fc39.noarch
perl-if-0.61.000-503.fc40.noarch
perl-interpreter-4:5.38.2-503.fc40.s390x
perl-libnet-3.15-501.fc39.noarch
perl-libs-4:5.38.2-503.fc40.s390x
perl-locale-1.10-503.fc40.noarch
perl-macros-4:5.38.2-503.fc40.noarch
perl-mro-1.28-503.fc40.s390x
perl-overload-1.37-503.fc40.noarch
perl-overloading-0.02-503.fc40.noarch
perl-parent-1:0.241-500.fc39.noarch
perl-podlators-1:5.01-500.fc39.noarch
perl-threads-1:2.36-500.fc39.s390x
perl-threads-shared-1.68-500.fc39.s390x
perl-vars-1.05-503.fc40.noarch
python-pip-wheel-23.2.1-1.fc39.noarch
python3-3.12.1-1.fc40.s390x
python3-libs-3.12.1-1.fc40.s390x
python3-numpy-1:1.26.0-2.fc40.s390x
tzdata-2023c-4.fc40.noarch
zlib-devel-1.2.13-5.fc40.s390x
Complete!
Finish: build setup for mmseq-1.0.11-16.fc40.src.rpm
Start: rpmbuild mmseq-1.0.11-16.fc40.src.rpm
warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1689811200
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.2bcudx
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf mmseq-1.0.11
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/1.0.11.zip
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd mmseq-1.0.11
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #2 (mmseq-zlib.patch):
+ echo 'Patch #2 (mmseq-zlib.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .mmseq-zlib.patch --fuzz=0
patching file src/Makefile
+ rm -f bin/offsetGTF-linux bin/postdiff-linux
+ sed -e s/-lblas/-lflexiblas/g -e s/-llapack/-lflexiblas/g -i src/Makefile
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.rEqI6g
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ cd src
+ make -j2 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection'
g++ -O3 -c sokal.cc
g++ -fopenmp -O3 -c uh.cpp
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 hitsio.cpp hitsio.hpp -c hitsio.cpp
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c -o fasta.o fasta.c
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -O3 offsetGTF.cpp -o ../bin/offsetGTF
offsetGTF.cpp: In function ‘int main(int, char**)’:
offsetGTF.cpp:115:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
115 | while(gff_ind < gff_positions[chrom].size()) {
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:117:57: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
117 | pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:114:11: warning: unused variable ‘curoff’ [-Wunused-variable]
114 | int curoff=offset;
| ^~~~~~
offsetGTF.cpp:150:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
150 | while(gff_ind < gff_positions[prevchrom].size()) {
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:163:53: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
163 | pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:177:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
177 | while(gff_ind < gff_positions[chrom].size() && gff_positions[chrom][gff_ind] <= pos) {
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:235:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
235 | for(int i=5; i < tokens.size(); i++) {
| ~~^~~~~~~~~~~~~~~
offsetGTF.cpp:237:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
237 | if(i < tokens.size()-1) {
| ~~^~~~~~~~~~~~~~~~~
offsetGTF.cpp:108:7: warning: unused variable ‘gff_pos’ [-Wunused-variable]
108 | int gff_pos= -1;
| ^~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
163 | for(int i = 0; i < transcriptName.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
184 | for(int i = 0; i < currentReadTranscripts.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
24 | if (VAL > numeric_limits<uint32_t>::max()) { \
| ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
191 | WRITE_UINT(ofs, hitsfileSchema);
| ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
193 | for(int i = 0; i < transcriptName.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
24 | if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
196 | WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
| ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
236 | for(int i = 0; i < currentReadTranscripts.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
356 | size_t nextStrLen;
| ^~~~~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
447 | }
| ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -O3 t2g_hits.cpp -o ../bin/t2g_hits
t2g_hits.cpp: In function ‘int main(int, char**)’:
t2g_hits.cpp:90:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
90 | for(int i=2; i < tokens.size(); i++) {
| ~~^~~~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -DARMA_64BIT_WORD -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 uh.o sokal.o mmcollapse.cpp -o ../bin/mmcollapse -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmcollapse.cpp: In function ‘void get_unidentifiable_transcripts(std::string, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, bool>&)’:
mmcollapse.cpp:158:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
158 | for(int i=0; i < tokens.size(); i++) {
| ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:213:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
213 | for(int i=0; i < tokens2.size(); i++) isIdent[tokens2[i]]=1;
| ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
259 | for(int i=0; i < tokens.size(); i++) {
| ~~^~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
163 | for(int i = 0; i < transcriptName.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
184 | for(int i = 0; i < currentReadTranscripts.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
24 | if (VAL > numeric_limits<uint32_t>::max()) { \
| ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
191 | WRITE_UINT(ofs, hitsfileSchema);
| ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
193 | for(int i = 0; i < transcriptName.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
24 | if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
196 | WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
| ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
236 | for(int i = 0; i < currentReadTranscripts.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
356 | size_t nextStrLen;
| ^~~~~~~~~~
mmcollapse.cpp: In function ‘void collapse(arma::cube&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<int, std::allocator<int> >)’:
mmcollapse.cpp:400:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
400 | for(int s=0; s < R.n_slices; s++) {
| ~~^~~~~~~~~~~~
mmcollapse.cpp:401:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
401 | for(int t=0; t < candidates.size(); t++) {
| ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:402:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
402 | for(int j=1; j < indexes.size(); j++) {
| ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:414:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
414 | for(int j=1; j < indexes.size(); j++) {
| ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:417:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
417 | for(int i=0; i < R.n_cols; i++) {
| ~~^~~~~~~~~~
mmcollapse.cpp:426:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
426 | for(int i=0; i < indexes.size(); i++) {
| ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:431:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
431 | for(int i=1; i < tset.size(); i++) {
| ~~^~~~~~~~~~~~~
mmcollapse.cpp:437:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
437 | for(int i=1; i < indexes.size(); i++) {
| ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘std::map<int, int> join_traces(arma::mat&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >)’:
mmcollapse.cpp:445:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
445 | for(int t=0; t < allnames.size(); t++) tmap[allnames[t]]=t;
| ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:452:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
452 | for(int c=0; c < candidates.size(); c++) {
| ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:456:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
456 | for(int t=0; t < tokens.size(); t++) {
| ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:464:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
464 | for(int t=1; t < indexes.size(); t++) {
| ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:469:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
469 | for(int t=1; t < indexes.size(); t++) {
| ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:476:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
476 | for(int i=0; i < toshed.size(); i++) {
| ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void mean_corrs(const arma::cube&, const arma::umat&, arma::mat&, arma::mat&, std::vector<int, std::allocator<int> >, std::vector<int, std::allocator<int> >, double)’:
mmcollapse.cpp:486:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
486 | for(int v= 0; v < R.n_rows; v++) {
| ~~^~~~~~~~~~
mmcollapse.cpp:492:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare]
492 | for(int i=0; i < u.size(); i++) {
| ~~^~~~~~~~~~
mmcollapse.cpp: In function ‘void get_corrs(arma::cube&, arma::mat&, const std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&)’:
mmcollapse.cpp:519:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
519 | for(int s=0; s < basenames.size(); s++) {
| ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:543:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
543 | for(int t=0; t < tokens.size(); t++) {
| ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘int main(int, char**)’:
mmcollapse.cpp:632:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
632 | for(int i=1; i < basenames.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:691:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
691 | for(int s=0; s < basenames.size(); s++) {
| ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:707:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
707 | for(int i=0; i < candidates.size(); i++) ts.push_back(i);
| ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:732:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
732 | for(int i=0 ;i < maxcorrs.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:738:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
738 | for(int i=0 ;i < mincorrs.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:802:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
802 | for(int i=0 ;i < maxcorrs.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:808:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
808 | for(int i=0 ;i < mincorrs.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:827:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
827 | for(int s=0; s < basenames.size(); s++) {
| ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:852:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
852 | for(int t=0; t < tokens.size(); t++) {
| ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:882:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
882 | for(int t=0; t < tokens2.size(); t++) {
| ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:934:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
934 | for(int t=0; t < M.n_cols; t++) {
| ~~^~~~~~~~~~
mmcollapse.cpp:963:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
963 | for(int i=1; i < tokens2.size(); i++) {
| ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:976:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
976 | if(MM.size1() < i+1 ) factor1=2;
| ~~~~~~~~~~~^~~~~
mmcollapse.cpp:977:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
977 | if(MM.size2() < j+1 ) factor2=2;
| ~~~~~~~~~~~^~~~~
mmcollapse.cpp:1010:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1010 | for(int t=0; t < ids.size(); t++) {
| ~~^~~~~~~~~~~~
mmcollapse.cpp:1083:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1083 | for(int i=0; i < ids.size(); i++) {
| ~~^~~~~~~~~~~~
mmcollapse.cpp:1092:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
1092 | for(int v = 0; v < M.n_cols; v++) {
| ~~^~~~~~~~~~
mmcollapse.cpp:840:9: warning: unused variable ‘isident’ [-Wunused-variable]
840 | int isident=0;
| ^~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
447 | }
| ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O2 bms.cpp bms.hpp -c bms.cpp
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
36 | for(int i=0; i < P.n_cols; i++) {
| ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
37 | for(int j=0; j < P.n_rows; j++) {
| ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
76 | for(int i=0;i < v.n_elem; i++) {
| ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
93 | for(int feature=0; feature < y->n_rows; feature++) {
| ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
97 | for(int i=0; i < M.n_cols; i++) {
| ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
102 | for(int l=0; l < P[model].n_cols; l++) {
| ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
132 | for(int feature=0; feature < y->n_rows; feature++) {
| ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
185 | for(int j=0; j < y->n_rows; j++) {
| ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
253 | for(int j=0; j < y->n_rows; j++) {
| ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
255 | for(int b=0; b < M.n_cols; b++) {
| ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
332 | for(int j=0; j < y->n_rows; j++) {
| ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
334 | for(int c=0; c < P[model].n_cols; c++) {
| ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
415 | for(int j=0; j < y->n_rows; j++) {
| ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
504 | for(int j=0; j < y->n_rows; j++) {
| ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
506 | for(int l=0; l < P[model].n_cols; l++) {
| ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
559 | for(int j=0; j < y->n_rows; j++) {
| ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
582 | for(int j=0; j < y->n_rows; j++) {
| ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
585 | for(int c=0; c < P[0].n_cols; c++) {
| ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
603 | for(int j=0; j < y->n_cols; j++) {
| ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
610 | for(int i=0; i < y->n_cols; i++) {
| ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
631 | for(int j=0; j < y->n_cols; j++) {
| ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
638 | for(int i=0; i < M.n_cols; i++) {
| ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
646 | for(int i=0; i < M.n_cols; i++) {
| ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
651 | for(int i=0; i < M.n_cols; i++) {
| ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
663 | for(int l=0; l < P[model].n_cols; l++) {
| ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
666 | for(int i=0; i < y->n_cols; i++) {
| ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
673 | for(int i=0; i < y->n_cols; i++) {
| ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
681 | for(int l=0; l < P[model].n_cols; l++) {
| ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
686 | for(int l=0; l < P[model].n_cols; l++) {
| ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
699 | for(int l=0; l < P[model].n_cols; l++) {
| ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
704 | for(int l=0; l < P[model].n_cols; l++) {
| ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
711 | for(int l=0; l < P[model].n_cols; l++) {
| ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
729 | for(int i=0; i < y->n_cols; i++) {
| ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
740 | for(int i=0; i < y->n_cols; i++) {
| ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
751 | for(int i=0; i < y->n_cols; i++) {
| ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
763 | for(int i=0; i < y->n_cols; i++) {
| ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
877 | for(int i=0; i < y->n_cols; i++) {
| ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
931 | for(int i=0; i < y->n_cols; i++) {
| ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
940 | for(int j=0; j < M.n_cols; j++) {
| ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
947 | for(int l=0; l < P[model].n_cols; l++) {
| ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
968 | for(int l=0; l < M.n_cols; l++) {
| ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
974 | for(int l=0; l < P[model].n_cols; l++) {
| ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
1086 | for(int l=0; l < M.n_cols; l++) {
| ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
1089 | for(int l=0; l < P[model].n_cols; l++) {
| ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
1100 | for(int i=0; i < y->n_rows; i++) {
| ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
1103 | for(int l=0; l < M.n_cols; l++) {
| ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
1106 | for(int l=0; l < P[model].n_cols; l++) {
| ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
1188 | for(int i=0; i < y->n_cols; i++) {
| ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1192 | if(C(i,model)+1 > _n.size()) {
| ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
1348 | for(int i=0; i < M.n_cols; i++) {
| ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
1354 | for(int i=0; i < M.n_cols; i++) {
| ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
1360 | for(int i=0; i < P[0].n_cols; i++) {
| ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
1366 | for(int i=0; i < P[1].n_cols; i++) {
| ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
1372 | for(int i=0; i < P[0].n_cols; i++) {
| ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
1378 | for(int i=0; i < P[1].n_cols; i++) {
| ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 sokal.o uh.o hitsio.o mmseq.cpp -o ../bin/mmseq -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmseq.cpp: In function ‘std::vector<double> meanvar(std::vector<double>, double, double)’:
mmseq.cpp:130:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
130 | for(int i=0;i < v.size(); i++) {
| ~~^~~~~~~~~~
mmseq.cpp: In function ‘int main(int, char**)’:
mmseq.cpp:244:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
244 | for(int i=0; i < tokens.size(); i++) {
| ~~^~~~~~~~~~~~~~~
mmseq.cpp:423:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
423 | if(M.size1() < m ) factor1=2;
| ~~~~~~~~~~^~~
mmseq.cpp:424:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
424 | if(M.size2() < n ) factor2=2;
| ~~~~~~~~~~^~~
mmseq.cpp:594:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
594 | for(unsigned t=0; t < n; t++) {
| ~~^~~
mmseq.cpp:736:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
736 | for(unsigned t=0; t < n; t++)
| ~~^~~
mmseq.cpp:765:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
765 | for(unsigned t=0; t < n; t++)
| ~~^~~
mmseq.cpp:774:11: warning: unused variable ‘threadid’ [-Wunused-variable]
774 | int threadid=OMP_GET_THREAD_NUM;
| ^~~~~~~~
mmseq.cpp:829:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
829 | for(unsigned t=0; t < n; t++)
| ~~^~~
mmseq.cpp:912:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
912 | for(unsigned t=0; t < n; t++) {
| ~~^~~
mmseq.cpp:940:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
940 | for(int i=0; i < identical_transcripts.size() * trace_length; i++) mu_trace_identical[i]=0;
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:961:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
961 | for(int i=0; i < gene2transcripts.size() * trace_length; i++) mu_trace_gene[i]=0;
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1098:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
1098 | for(unsigned t=0; t < n; t++) gofs << indexSid[t] << " ";
| ~~^~~
mmseq.cpp:1112:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1112 | for(int i=0; i < percentiles.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1136:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1136 | for(int j=0; j < percentiles.size(); j++) {
| ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1144:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1144 | for(int j=0; j < percentiles.size(); j++) {
| ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1149:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1149 | for(int i=0;i < identical_transcripts.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1156:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1156 | for(int j=0; j < percentiles.size(); j++) {
| ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1161:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1161 | for(int i=0;i < gene2transcripts.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1168:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1168 | for(int j=0; j < percentiles.size(); j++) {
| ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1179:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1179 | for(int j=0; j < percentiles.size(); j++) {
| ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1189:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1189 | for(int j=0; j < percentiles.size(); j++) {
| ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1208:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1208 | for(int t=0; t < identical_transcripts.size() ; t++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1212:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1212 | for(int t=0; t < gene2transcripts.size(); t++){
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1226:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1226 | for(int i=0; i < identical_transcripts.size() ; i++) meanmu_identical[i] /= trace_length;
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1227:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1227 | for(int i=0; i < gene2transcripts.size(); i++) meanmu_gene[i]/= trace_length;
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1330:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1330 | for(int t=0; t < identical_transcripts.size(); t++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1349:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1349 | for(int g=0; g < gene2transcripts.size(); g++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1473:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1473 | for(int i=0; i < percentiles.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1475:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1475 | if(i==percentiles.size()-1) {
| ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1482:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1482 | for(int i=0; i < percentiles.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1484:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1484 | if(i==percentiles.size()-1) {
| ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1506 | for(int i=0; i < percentiles.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1508:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1508 | if(i==percentiles.size()-1) {
| ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1514:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1514 | for(int i=0; i < percentiles.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1516:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1516 | if(i==percentiles.size()-1) {
| ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1536:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1536 | for(int i=0; i < percentiles.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1538:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1538 | if(i==percentiles.size()-1) {
| ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1544:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1544 | for(int i=0; i < percentiles.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1546:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1546 | if(i==percentiles.size()-1) {
| ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1560:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1560 | for(int i=0; i < percentiles.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1562:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1562 | if(i==percentiles.size()-1) {
| ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1582:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1582 | for(int i=0; i < percentiles.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1584:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1584 | if(i==percentiles.size()-1) {
| ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1599:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1599 | for(int i=0; i < percentiles.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1601:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1601 | if(i==percentiles.size()-1) {
| ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1619:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1619 | for(int i=0; i < percentiles.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1621:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1621 | if(i==percentiles.size()-1) {
| ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1644:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1644 | for(int i=0; i < percentiles.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1646:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1646 | if(i==percentiles.size()-1) {
| ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1656:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1656 | for(int i=0; i < percentiles.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1658:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1658 | if(i==percentiles.size()-1) {
| ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:308:8: warning: unused variable ‘buf16384’ [-Wunused-variable]
308 | char buf16384[16384];
| ^~~~~~~~
mmseq.cpp:391:8: warning: variable ‘doublehit’ set but not used [-Wunused-but-set-variable]
391 | bool doublehit;
| ^~~~~~~~~
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
36 | for(int i=0; i < P.n_cols; i++) {
| ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
37 | for(int j=0; j < P.n_rows; j++) {
| ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
76 | for(int i=0;i < v.n_elem; i++) {
| ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
93 | for(int feature=0; feature < y->n_rows; feature++) {
| ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
97 | for(int i=0; i < M.n_cols; i++) {
| ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
102 | for(int l=0; l < P[model].n_cols; l++) {
| ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
132 | for(int feature=0; feature < y->n_rows; feature++) {
| ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
185 | for(int j=0; j < y->n_rows; j++) {
| ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
253 | for(int j=0; j < y->n_rows; j++) {
| ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
255 | for(int b=0; b < M.n_cols; b++) {
| ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
332 | for(int j=0; j < y->n_rows; j++) {
| ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
334 | for(int c=0; c < P[model].n_cols; c++) {
| ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
415 | for(int j=0; j < y->n_rows; j++) {
| ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
504 | for(int j=0; j < y->n_rows; j++) {
| ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
506 | for(int l=0; l < P[model].n_cols; l++) {
| ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
559 | for(int j=0; j < y->n_rows; j++) {
| ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
582 | for(int j=0; j < y->n_rows; j++) {
| ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
585 | for(int c=0; c < P[0].n_cols; c++) {
| ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
603 | for(int j=0; j < y->n_cols; j++) {
| ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
610 | for(int i=0; i < y->n_cols; i++) {
| ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
631 | for(int j=0; j < y->n_cols; j++) {
| ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
638 | for(int i=0; i < M.n_cols; i++) {
| ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
646 | for(int i=0; i < M.n_cols; i++) {
| ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
651 | for(int i=0; i < M.n_cols; i++) {
| ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
663 | for(int l=0; l < P[model].n_cols; l++) {
| ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
666 | for(int i=0; i < y->n_cols; i++) {
| ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
673 | for(int i=0; i < y->n_cols; i++) {
| ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
681 | for(int l=0; l < P[model].n_cols; l++) {
| ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
686 | for(int l=0; l < P[model].n_cols; l++) {
| ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
699 | for(int l=0; l < P[model].n_cols; l++) {
| ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
704 | for(int l=0; l < P[model].n_cols; l++) {
| ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
711 | for(int l=0; l < P[model].n_cols; l++) {
| ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
729 | for(int i=0; i < y->n_cols; i++) {
| ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
740 | for(int i=0; i < y->n_cols; i++) {
| ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
751 | for(int i=0; i < y->n_cols; i++) {
| ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
763 | for(int i=0; i < y->n_cols; i++) {
| ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
877 | for(int i=0; i < y->n_cols; i++) {
| ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
931 | for(int i=0; i < y->n_cols; i++) {
| ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
940 | for(int j=0; j < M.n_cols; j++) {
| ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
947 | for(int l=0; l < P[model].n_cols; l++) {
| ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
968 | for(int l=0; l < M.n_cols; l++) {
| ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
974 | for(int l=0; l < P[model].n_cols; l++) {
| ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
1086 | for(int l=0; l < M.n_cols; l++) {
| ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
1089 | for(int l=0; l < P[model].n_cols; l++) {
| ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
1100 | for(int i=0; i < y->n_rows; i++) {
| ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
1103 | for(int l=0; l < M.n_cols; l++) {
| ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
1106 | for(int l=0; l < P[model].n_cols; l++) {
| ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
1188 | for(int i=0; i < y->n_cols; i++) {
| ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1192 | if(C(i,model)+1 > _n.size()) {
| ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
1348 | for(int i=0; i < M.n_cols; i++) {
| ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
1354 | for(int i=0; i < M.n_cols; i++) {
| ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
1360 | for(int i=0; i < P[0].n_cols; i++) {
| ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
1366 | for(int i=0; i < P[1].n_cols; i++) {
| ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
1372 | for(int i=0; i < P[0].n_cols; i++) {
| ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
1378 | for(int i=0; i < P[1].n_cols; i++) {
| ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 fasta.o hitsio.o bam2hits.cpp -o ../bin/bam2hits -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
bam2hits.cpp: In function ‘void outputMergeHeaders(std::vector<FastaRecord>&, char, const char*, bool, HitsfileWriter&)’:
bam2hits.cpp:109:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
109 | for(int i=0; i < sortedfastas.size()-1; i++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:119:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
119 | for(int j=0; j < curSet.size()-1; j++) {
| ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
137 | for(int j=0; j < curSet.size()-1; j++) {
| ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp: In function ‘std::vector<Alignment> repetitiveTranscriptFilter(std::vector<Alignment>&, int)’:
bam2hits.cpp:218:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Alignment>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
218 | for(int j=0; j < alns.size(); j++) {
| ~~^~~~~~~~~~~~~
bam2hits.cpp:219:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
219 | if(i < torem.size() && j==torem[i]) {
| ~~^~~~~~~~~~~~~~
bam2hits.cpp: In function ‘int main(int, char**)’:
bam2hits.cpp:518:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
518 | if(_B != tg[0].size()-2) {
| ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:520:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
520 | if(_A == tg[0].size()-2) {
| ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:522:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
522 | if(_A != tg[1].size()-2) {
| ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:558:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
558 | for(int i=1; i < tokens2.size(); i++) {
| ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:609:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
609 | for(int i=0; i < fastas.size(); i++) {
| ~~^~~~~~~~~~~~~~~
bam2hits.cpp:645:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
645 | for(int i=0;i < fastas.size(); i++) transcriptCounts[i] /= (double)fastas[i].seq().size();
| ~~^~~~~~~~~~~~~~~
bam2hits.cpp:659:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
659 | for(int i=0; i < fastas.size(); i++) {
| ~~^~~~~~~~~~~~~~~
bam2hits.cpp:662:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
662 | for(int j =0; j < fastas[i].seq().size(); j++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:663:44: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
663 | int tag = (j <= MSEQ_BEFORE || j >= fastas[i].seq().size()-MSEQ_AFTER) ? -2 : 0;
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:791:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
791 | for(int j=MSEQ_BEFORE + 1; j <= fastas[i].seq().length()-MSEQ_AFTER; j++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:920:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
920 | for(int j=1; j < frequencies.size()-WINDOWFORISIZEMODE + 1; j++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:948:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
948 | for(int i=0; i < testIsizes.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~
bam2hits.cpp:959:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
959 | for(int i=0; i < heights.size(); i++) {
| ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:997:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
997 | for(int fl=1; fl <= (it->seq()).size(); fl++) {
| ~~~^~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:1091:56: warning: comparing the result of pointer addition ‘(bam_aux_get(((const bam1_t*)line), ((const char*)"NM")) + ((sizetype)ait.__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >::operator->()->Alignment::NM()))’ and NULL [-Waddress]
1091 | ait->NM(ait->NM() + bam_aux_get(line,"NM") == NULL ? 0 : bam_aux2i(bam_aux_get(line,"NM")));
| ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -O3 fasta.o extract_transcripts.cpp -o ../bin/extract_transcripts
extract_transcripts.cpp: In function ‘int main(int, char**)’:
extract_transcripts.cpp:122:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
122 | for(int i=0; i < tokens2.size(); i++) {
| ~~^~~~~~~~~~~~~~~~
extract_transcripts.cpp:169:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
169 | for(int i=0; i < tokens.size(); i++) {
| ~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:195:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
195 | for(int i=0; i < it->starts()->size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~
extract_transcripts.cpp:203:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
203 | while(faline < stitch.size()) {
| ~~~~~~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:108:7: warning: unused variable ‘line’ [-Wunused-variable]
108 | int line=0;
| ^~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 hitsio.o hitstools.cpp -o ../bin/hitstools -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
hitstools.cpp: In function ‘void convert(char*, std::string)’:
hitstools.cpp:51:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
51 | for(int i = 0; i < transcriptName.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp: In function ‘int main(int, char**)’:
hitstools.cpp:96:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
96 | for(int i = 0; i < transcriptName.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp:136:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
136 | for(int i = 0; i < transcriptName.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O2 bms.o mmdiff.cpp -o ../bin/mmdiff -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmdiff.cpp: In function ‘void parse_mmseq(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, int, int, double, bool)’:
mmdiff.cpp:100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
100 | for(int i=0; i < filenames.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:111:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
111 | for(int j=0; j < tokens.size(); j++) {
| ~~^~~~~~~~~~~~~~~
mmdiff.cpp:138:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
138 | if(k + 1 > features.size()) {
| ~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:147:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
147 | if(k+1 > y.n_rows) {
| ~~~~^~~~~~~~~~
mmdiff.cpp:152:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
152 | if(!useprops && tokens[lmg_ind]=="NA" || useprops && tokens[mp_ind]=="NA") {
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:173:62: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
173 | if(range_start >=0 && range_end > range_start && range_end < y.n_rows) {
| ~~~~~~~~~~^~~~~~~~~~
mmdiff.cpp:94:46: warning: variable ‘mcse_ind’ set but not used [-Wunused-but-set-variable]
94 | int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
| ^~~~~~~~
mmdiff.cpp:94:59: warning: variable ‘iact_ind’ set but not used [-Wunused-but-set-variable]
94 | int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
| ^~~~~~~~
mmdiff.cpp: In function ‘void apply_normalisation(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, arma::Mat<double>&, arma::Mat<double>&, double)’:
mmdiff.cpp:212:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
212 | for(int i=0; i < uh.n_rows; i++) {
| ~~^~~~~~~~~~~
mmdiff.cpp:214:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
214 | for(int j=0; j < uh.n_cols; j++) {
| ~~^~~~~~~~~~~
mmdiff.cpp:230:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
230 | for(int i=0; i < use.size(); i++) {
| ~~^~~~~~~~~~~~
mmdiff.cpp:232:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
232 | for(int j=0; j < y.n_cols; j++) {
| ~~^~~~~~~~~~
mmdiff.cpp:239:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
239 | for(int sample=0; sample < y.n_cols; sample++) {
| ~~~~~~~^~~~~~~~~~
mmdiff.cpp:241:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
241 | for(int i=0; i < use.size(); i++) {
| ~~^~~~~~~~~~~~
mmdiff.cpp:246:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
246 | for(int i=0; i < y.n_rows; i++) {
| ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void apply_permutation(arma::Mat<double>&, arma::Mat<double>&)’:
mmdiff.cpp:257:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
257 | for(int j=0; j< y.n_cols; j++) randinds.push_back(j);
| ~^~~~~~~~~~
mmdiff.cpp:258:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
258 | for(int i=0; i < y.n_rows; i++) {
| ~~^~~~~~~~~~
mmdiff.cpp:259:19: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<int*, vector<int, allocator<int> > >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations]
259 | random_shuffle(randinds.begin(), randinds.end());
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/algorithm:61,
from mmdiff.cpp:31:
/usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here
4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last)
| ^~~~~~~~~~~~~~
mmdiff.cpp:260:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
260 | for(int j=0; j < y.n_cols; j++) {
| ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void parse_matrices(std::string, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<int>&, int)’:
mmdiff.cpp:310:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
310 | for(int t=0; t < tokens.size(); t++) {
| ~~^~~~~~~~~~~~~~~
mmdiff.cpp: In function ‘int main(int, char**)’:
mmdiff.cpp:420:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
420 | for(int i=0; i < arguments.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:431:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
431 | for(int i=0; i < arguments.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:439:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
439 | while(ss < arguments.size()) {
| ~~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:451:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
451 | if(ss != arguments.size()) {
| ~~~^~~~~~~~~~~~~~~~~~~
mmdiff.cpp:578:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
578 | for(int i=0; i < arguments.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:640:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
640 | for(int i=0; i < simple_de.size(); i++) {
| ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:759:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
759 | if(inburnin && iter == OUTLEN/10 || !inburnin && iter==tuneiters) {
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:764:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
764 | for(int feature=0; feature < features.size(); feature++) {
| ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:837:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
837 | if(inburnin && iter % subsample_burnin ==0 || !inburnin && iter >= tuneiters && (iter - tuneiters) % subsample_iter == 0) {
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:886:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
886 | for(int l=0; l < M.n_cols; l++) {
| ~~^~~~~~~~~~
mmdiff.cpp:898:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
898 | for(int f=0; f < samplenames.size(); f++) {
| ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:902:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string<char>::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare]
902 | found2 = found2==string::npos ? -1 : found2;
| ~~~~~~^~~~~~~~~~~~~~
mmdiff.cpp:907:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
907 | for(int f=0; f < samplenames.size(); f++) {
| ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:909:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
909 | if(f < samplenames.size()-1) cout << "\t";
| ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:914:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
914 | for(int feature=0; feature < features.size(); feature++) {
| ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:926:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
926 | for(int l=0; l < M.n_cols; l++) {
| ~~^~~~~~~~~~
mmdiff.cpp:936:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
936 | for(int f=0; f < samplenames.size(); f++) {
| ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:939:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
939 | for(int f=0; f < samplenames.size(); f++) {
| ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:941:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
941 | if(f < samplenames.size()-1) cout << "\t";
| ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:951:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
951 | for(int feature=0; feature < features.size(); feature++) {
| ~~~~~~~~^~~~~~~~~~~~~~~~~
/usr/bin/ld: /tmp/ccuG5fOp.ltrans0.ltrans.o: in function `main':
/builddir/build/BUILD/mmseq-1.0.11/src/bam2hits.cpp:653:(.text.startup+0x2cb4): warning: the use of `tmpnam' is dangerous, better use `mkstemp'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.2K0jZY
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x
++ dirname /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ rm -rf /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x
+ mkdir -p /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/bam2hits /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/extract_transcripts /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/hitstools /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/mmcollapse /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/mmdiff /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/mmseq /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/offsetGTF /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/t2g_hits /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/fastagrep.sh bin/mouse_strain_transcriptome.sh bin/usage.sh /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/filterGTF.rb bin/haploref.rb bin/testregexp.rb /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ install -p -m 0755 bin/ensembl_gtf_to_gff.pl /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/bin
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.0.11-16.fc40 --unique-debug-suffix -1.0.11-16.fc40.s390x --unique-debug-src-base mmseq-1.0.11-16.fc40.s390x --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/mmseq-1.0.11
find-debuginfo: starting
Extracting debug info from 8 files
DWARF-compressing 8 files
sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/mmseq-1.0.11-16.fc40.s390x
542 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/ensembl_gtf_to_gff.pl from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/testregexp.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/haploref.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/filterGTF.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/usage.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/mouse_strain_transcriptome.sh from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/bin/fastagrep.sh from /bin/bash to #!/usr/bin/bash
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Mcw2QR
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
++ bin/mmseq --version
++ true
+ test mmseq-1.0.11 = mmseq-1.0.11
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: mmseq-1.0.11-16.fc40.s390x
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.CDvofB
+ umask 022
+ cd /builddir/build/BUILD
+ cd mmseq-1.0.11
+ DOCDIR=/builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/share/doc/mmseq
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11/README.md /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11/COPYING /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11/doc /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x/usr/share/doc/mmseq
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: mmseq = 1.0.11-16.fc40 mmseq(s390-64) = 1.0.11-16.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/bash /usr/bin/perl /usr/bin/ruby /usr/bin/sh libboost_iostreams.so.1.83.0()(64bit) libboost_regex.so.1.83.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.2)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgsl.so.27()(64bit) libgslcblas.so.0()(64bit) libhts.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) perl(strict) rtld(GNU_HASH)
Processing files: mmseq-debugsource-1.0.11-16.fc40.s390x
Provides: mmseq-debugsource = 1.0.11-16.fc40 mmseq-debugsource(s390-64) = 1.0.11-16.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: mmseq-debuginfo-1.0.11-16.fc40.s390x
Provides: debuginfo(build-id) = 0cc02d70a35fe4213a5da116a823b12bb4d31e8e debuginfo(build-id) = 462a52e42b889a97d6865d2a208d387897c792e0 debuginfo(build-id) = 5124052d79b0542249dfa19b05ae7b54524b7429 debuginfo(build-id) = 57fcf7297cb25d9bf6f93b73b640d6754724f445 debuginfo(build-id) = 7921d30d374a23629853f98f46745128408c1d68 debuginfo(build-id) = 79f50c2b4c101f1982bb50fe52b5f84c61604291 debuginfo(build-id) = 90753f2b96c0e1f292027f52741a20eabeeb89d4 debuginfo(build-id) = 989d1de11ca41d431c6b1f100051afedf64adf33 mmseq-debuginfo = 1.0.11-16.fc40 mmseq-debuginfo(s390-64) = 1.0.11-16.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: mmseq-debugsource(s390-64) = 1.0.11-16.fc40
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x
Wrote: /builddir/build/RPMS/mmseq-1.0.11-16.fc40.s390x.rpm
Wrote: /builddir/build/RPMS/mmseq-debugsource-1.0.11-16.fc40.s390x.rpm
Wrote: /builddir/build/RPMS/mmseq-debuginfo-1.0.11-16.fc40.s390x.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.YfbJvo
+ umask 022
+ cd /builddir/build/BUILD
+ cd mmseq-1.0.11
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.s390x
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.npGJqp
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-SPECPARTS
+ rm -rf mmseq-1.0.11 mmseq-1.0.11.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
RPM build warnings:
%patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Finish: rpmbuild mmseq-1.0.11-16.fc40.src.rpm
Finish: build phase for mmseq-1.0.11-16.fc40.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-s390x-1702482417.624082/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-s390x-1702482417.624082/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-s390x-1702482417.624082/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-16.fc40.src.rpm) Config(child) 2 minutes 1 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
"packages": [
{
"name": "mmseq",
"epoch": null,
"version": "1.0.11",
"release": "16.fc40",
"arch": "s390x"
},
{
"name": "mmseq",
"epoch": null,
"version": "1.0.11",
"release": "16.fc40",
"arch": "src"
},
{
"name": "mmseq-debuginfo",
"epoch": null,
"version": "1.0.11",
"release": "16.fc40",
"arch": "s390x"
},
{
"name": "mmseq-debugsource",
"epoch": null,
"version": "1.0.11",
"release": "16.fc40",
"arch": "s390x"
}
]
}
RPMResults finished