Warning: Permanently added '169.63.185.149' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6941463-fedora-39-s390x --chroot fedora-39-s390x Version: 0.70 PID: 6363 Logging PID: 6364 Task: {'appstream': False, 'background': True, 'build_id': 6941463, 'buildroot_pkgs': [], 'chroot': 'fedora-39-s390x', 'enable_net': False, 'fedora_review': False, 'git_hash': '5831302f46c34069599b83390bd7ae6755ee3b27', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-rtracklayer', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-rtracklayer', 'package_version': '1.56.1-6', 'project_dirname': 'openblas-0.3.23', 'project_name': 'openblas-0.3.23', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-39-s390x/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/releng', 'source_json': {}, 'source_type': None, 'submitter': 'https://src.fedoraproject.org/user/releng', 'tags': [], 'task_id': '6941463-fedora-39-s390x', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-rtracklayer /var/lib/copr-rpmbuild/workspace/workdir-_hei6kli/R-rtracklayer --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-rtracklayer', '/var/lib/copr-rpmbuild/workspace/workdir-_hei6kli/R-rtracklayer', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-_hei6kli/R-rtracklayer'... Running: git checkout 5831302f46c34069599b83390bd7ae6755ee3b27 -- cmd: ['git', 'checkout', '5831302f46c34069599b83390bd7ae6755ee3b27', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-_hei6kli/R-rtracklayer rc: 0 stdout: stderr: Note: switching to '5831302f46c34069599b83390bd7ae6755ee3b27'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 5831302 automatic import of R-rtracklayer Running: copr-distgit-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-_hei6kli/R-rtracklayer rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading rtracklayer_1.56.1.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o rtracklayer_1.56.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/R-rtracklayer/rtracklayer_1.56.1.tar.gz/md5/e275748ea08902f8d7cbbe6472b71276/rtracklayer_1.56.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 3923k 100 3923k 0 0 32.2M 0 --:--:-- --:--:-- --:--:-- 32.4M INFO: Reading stdout from command: md5sum rtracklayer_1.56.1.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-_hei6kli/R-rtracklayer/R-rtracklayer.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-_hei6kli/R-rtracklayer --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1706029470.817520 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.4 starting (python version = 3.11.3, NVR = mock-5.4-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-_hei6kli/R-rtracklayer/R-rtracklayer.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-_hei6kli/R-rtracklayer --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1706029470.817520 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-_hei6kli/R-rtracklayer/R-rtracklayer.spec) Config(fedora-39-s390x) Start: clean chroot Finish: clean chroot Mock Version: 5.4 INFO: Mock Version: 5.4 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-s390x-bootstrap-1706029470.817520/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:39 INFO: Pulling image: registry.fedoraproject.org/fedora:39 INFO: Copy content of container registry.fedoraproject.org/fedora:39 to /var/lib/mock/fedora-39-s390x-bootstrap-1706029470.817520/root INFO: Checking that registry.fedoraproject.org/fedora:39 image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:39 with podman image mount INFO: image registry.fedoraproject.org/fedora:39 as /var/lib/containers/storage/overlay/8762d4e942255ae5f22c1ca5cdcbea9118d53523b90ef15d705fc17a7574e0a0/merged INFO: umounting image registry.fedoraproject.org/fedora:39 (/var/lib/containers/storage/overlay/8762d4e942255ae5f22c1ca5cdcbea9118d53523b90ef15d705fc17a7574e0a0/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 3.3 MB/s | 17 MB 00:05 Additional repo http_kojipkgs_fedoraproject_org 263 MB/s | 68 MB 00:00 fedora 57 MB/s | 79 MB 00:01 updates 17 MB/s | 23 MB 00:01 Last metadata expiration check: 0:00:05 ago on Tue Jan 23 17:05:42 2024. Package python3-dnf-4.18.1-2.fc39.noarch is already installed. Dependencies resolved. ========================================================================================================================= Package Arch Version Repository Size ========================================================================================================================= Installing: python3-dnf-plugins-core noarch 4.4.4-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 302 k Upgrading: dnf noarch 4.18.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 496 k dnf-data noarch 4.18.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39 k python3-dnf noarch 4.18.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 549 k yum noarch 4.18.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37 k Installing dependencies: dbus-libs s390x 1:1.14.10-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 159 k python3-dateutil noarch 1:2.8.2-11.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 345 k python3-dbus s390x 1.3.2-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 147 k python3-distro noarch 1.9.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 45 k python3-six noarch 1.16.0-12.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k python3-systemd s390x 235-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 100 k Transaction Summary ========================================================================================================================= Install 7 Packages Upgrade 4 Packages Total download size: 2.2 M Downloading Packages: (1/11): dbus-libs-1.14.10-1.fc40.s390x.rpm 5.0 MB/s | 159 kB 00:00 (2/11): python3-dbus-1.3.2-4.fc39.s390x.rpm 4.2 MB/s | 147 kB 00:00 (3/11): python3-distro-1.9.0-1.fc40.noarch.rpm 9.5 MB/s | 45 kB 00:00 (4/11): python3-dateutil-2.8.2-11.fc40.noarch.r 8.3 MB/s | 345 kB 00:00 (5/11): python3-dnf-plugins-core-4.4.4-1.fc40.n 43 MB/s | 302 kB 00:00 (6/11): python3-six-1.16.0-12.fc39.noarch.rpm 8.0 MB/s | 41 kB 00:00 (7/11): python3-systemd-235-5.fc39.s390x.rpm 21 MB/s | 100 kB 00:00 (8/11): dnf-data-4.18.2-1.fc40.noarch.rpm 8.3 MB/s | 39 kB 00:00 (9/11): dnf-4.18.2-1.fc40.noarch.rpm 52 MB/s | 496 kB 00:00 (10/11): yum-4.18.2-1.fc40.noarch.rpm 7.6 MB/s | 37 kB 00:00 (11/11): python3-dnf-4.18.2-1.fc40.noarch.rpm 78 MB/s | 549 kB 00:00 -------------------------------------------------------------------------------- Total 39 MB/s | 2.2 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Upgrading : dnf-data-4.18.2-1.fc40.noarch 1/15 Upgrading : python3-dnf-4.18.2-1.fc40.noarch 2/15 Upgrading : dnf-4.18.2-1.fc40.noarch 3/15 Running scriptlet: dnf-4.18.2-1.fc40.noarch 3/15 Installing : python3-systemd-235-5.fc39.s390x 4/15 Installing : python3-six-1.16.0-12.fc39.noarch 5/15 Installing : python3-dateutil-1:2.8.2-11.fc40.noarch 6/15 Installing : python3-distro-1.9.0-1.fc40.noarch 7/15 Installing : dbus-libs-1:1.14.10-1.fc40.s390x 8/15 Installing : python3-dbus-1.3.2-4.fc39.s390x 9/15 Installing : python3-dnf-plugins-core-4.4.4-1.fc40.noarch 10/15 Upgrading : yum-4.18.2-1.fc40.noarch 11/15 Cleanup : yum-4.18.1-2.fc39.noarch 12/15 Running scriptlet: dnf-4.18.1-2.fc39.noarch 13/15 Cleanup : dnf-4.18.1-2.fc39.noarch 13/15 Running scriptlet: dnf-4.18.1-2.fc39.noarch 13/15 Cleanup : python3-dnf-4.18.1-2.fc39.noarch 14/15 Cleanup : dnf-data-4.18.1-2.fc39.noarch 15/15 Running scriptlet: dnf-data-4.18.1-2.fc39.noarch 15/15 Verifying : dbus-libs-1:1.14.10-1.fc40.s390x 1/15 Verifying : python3-dateutil-1:2.8.2-11.fc40.noarch 2/15 Verifying : python3-dbus-1.3.2-4.fc39.s390x 3/15 Verifying : python3-distro-1.9.0-1.fc40.noarch 4/15 Verifying : python3-dnf-plugins-core-4.4.4-1.fc40.noarch 5/15 Verifying : python3-six-1.16.0-12.fc39.noarch 6/15 Verifying : python3-systemd-235-5.fc39.s390x 7/15 Verifying : dnf-4.18.2-1.fc40.noarch 8/15 Verifying : dnf-4.18.1-2.fc39.noarch 9/15 Verifying : dnf-data-4.18.2-1.fc40.noarch 10/15 Verifying : dnf-data-4.18.1-2.fc39.noarch 11/15 Verifying : python3-dnf-4.18.2-1.fc40.noarch 12/15 Verifying : python3-dnf-4.18.1-2.fc39.noarch 13/15 Verifying : yum-4.18.2-1.fc40.noarch 14/15 Verifying : yum-4.18.1-2.fc39.noarch 15/15 Upgraded: dnf-4.18.2-1.fc40.noarch dnf-data-4.18.2-1.fc40.noarch python3-dnf-4.18.2-1.fc40.noarch yum-4.18.2-1.fc40.noarch Installed: dbus-libs-1:1.14.10-1.fc40.s390x python3-dateutil-1:2.8.2-11.fc40.noarch python3-dbus-1.3.2-4.fc39.s390x python3-distro-1.9.0-1.fc40.noarch python3-dnf-plugins-core-4.4.4-1.fc40.noarch python3-six-1.16.0-12.fc39.noarch python3-systemd-235-5.fc39.s390x Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-s390x-1706029470.817520/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.0-1.fc39.s390x rpm-sequoia-1.5.0-1.fc39.s390x python3-dnf-4.18.2-1.fc40.noarch python3-dnf-plugins-core-4.4.4-1.fc40.noarch yum-4.18.2-1.fc40.noarch Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 16 MB/s | 17 MB 00:01 Additional repo http_kojipkgs_fedoraproject_org 213 MB/s | 68 MB 00:00 fedora 6.2 MB/s | 79 MB 00:12 updates 1.9 MB/s | 23 MB 00:11 Last metadata expiration check: 0:00:04 ago on Tue Jan 23 17:07:17 2024. Dependencies resolved. ======================================================================================================================================== Package Arch Version Repository Size ======================================================================================================================================== Installing group/module packages: bash s390x 5.2.26-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 M bzip2 s390x 1.0.8-16.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 53 k coreutils s390x 9.4-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M cpio s390x 2.14-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 276 k diffutils s390x 3.10-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 398 k fedora-release-common noarch 40-0.29 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21 k findutils s390x 1:4.9.0-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 488 k gawk s390x 5.3.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M glibc-minimal-langpack s390x 2.38.9000-33.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 95 k grep s390x 3.11-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 294 k gzip s390x 1.12-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 166 k info s390x 7.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 195 k patch s390x 2.7.6-22.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 134 k redhat-rpm-config noarch 280-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 75 k rpm-build s390x 4.19.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 71 k sed s390x 4.8-14.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 300 k shadow-utils s390x 2:4.14.0-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M tar s390x 2:1.35-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 865 k unzip s390x 6.0-62.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 194 k util-linux s390x 2.39.3-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M which s390x 2.21-40.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 43 k xz s390x 5.4.5-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 532 k Installing dependencies: alternatives s390x 1.26-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k ansible-srpm-macros noarch 1-12.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21 k audit-libs s390x 4.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 125 k authselect s390x 1.5.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 143 k authselect-libs s390x 1.5.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 233 k basesystem noarch 11-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.2 k binutils s390x 2.41-30.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.9 M binutils-gold s390x 2.41-30.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 996 k bzip2-libs s390x 1.0.8-16.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 46 k ca-certificates noarch 2023.2.62_v7.0.401-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 863 k coreutils-common s390x 9.4-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 M cracklib s390x 2.9.11-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 83 k crypto-policies noarch 20231204-1.git1e3a2e4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 69 k curl s390x 8.5.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 372 k cyrus-sasl-lib s390x 2.1.28-17.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 820 k debugedit s390x 5.0-12.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 81 k dwz s390x 0.15-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144 k ed s390x 1.20-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 83 k efi-srpm-macros noarch 5-9.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 22 k elfutils s390x 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 571 k elfutils-debuginfod-client s390x 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38 k elfutils-default-yama-scope noarch 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13 k elfutils-libelf s390x 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 200 k elfutils-libs s390x 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 276 k 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s390x 0.8.2-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37 k xz-libs s390x 5.4.5-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 114 k zig-srpm-macros noarch 1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.0 k zip s390x 3.0-39.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 283 k zlib-ng-compat s390x 2.1.6-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 66 k zstd s390x 1.5.5-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 506 k Installing Groups: Buildsystem building group Transaction Summary ======================================================================================================================================== Install 152 Packages Total download size: 52 M Installed size: 179 M Downloading Packages: (1/152): ansible-srpm-macros-1-12.fc40.noarch.r 631 kB/s | 21 kB 00:00 (2/152): alternatives-1.26-1.fc40.s390x.rpm 1.2 MB/s | 41 kB 00:00 (3/152): audit-libs-4.0-1.fc40.s390x.rpm 15 MB/s | 125 kB 00:00 (4/152): authselect-1.5.0-1.fc40.s390x.rpm 17 MB/s | 143 kB 00:00 (5/152): basesystem-11-18.fc39.noarch.rpm 1.8 MB/s | 7.2 kB 00:00 (6/152): authselect-libs-1.5.0-1.fc40.s390x.rpm 23 MB/s | 233 kB 00:00 (7/152): bash-5.2.26-1.fc40.s390x.rpm 139 MB/s | 1.8 MB 00:00 (8/152): binutils-gold-2.41-30.fc40.s390x.rpm 102 MB/s | 996 kB 00:00 (9/152): bzip2-1.0.8-16.fc39.s390x.rpm 8.9 MB/s | 53 kB 00:00 (10/152): bzip2-libs-1.0.8-16.fc39.s390x.rpm 8.0 MB/s | 46 kB 00:00 (11/152): ca-certificates-2023.2.62_v7.0.401-4. 123 MB/s | 863 kB 00:00 (12/152): coreutils-9.4-3.fc40.s390x.rpm 97 MB/s | 1.2 MB 00:00 (13/152): binutils-2.41-30.fc40.s390x.rpm 94 MB/s | 5.9 MB 00:00 (14/152): coreutils-common-9.4-3.fc40.s390x.rpm 118 MB/s | 2.1 MB 00:00 (15/152): cpio-2.14-5.fc40.s390x.rpm 38 MB/s | 276 kB 00:00 (16/152): cracklib-2.9.11-2.fc39.s390x.rpm 16 MB/s | 83 kB 00:00 (17/152): crypto-policies-20231204-1.git1e3a2e4 14 MB/s | 69 kB 00:00 (18/152): curl-8.5.0-1.fc40.s390x.rpm 47 MB/s | 372 kB 00:00 (19/152): cyrus-sasl-lib-2.1.28-17.fc40.s390x.r 81 MB/s | 820 kB 00:00 (20/152): debugedit-5.0-12.fc40.s390x.rpm 15 MB/s | 81 kB 00:00 (21/152): diffutils-3.10-3.fc39.s390x.rpm 62 MB/s | 398 kB 00:00 (22/152): dwz-0.15-3.fc39.s390x.rpm 29 MB/s | 144 kB 00:00 (23/152): efi-srpm-macros-5-9.fc39.noarch.rpm 6.1 MB/s | 22 kB 00:00 (24/152): ed-1.20-1.fc40.s390x.rpm 17 MB/s | 83 kB 00:00 (25/152): elfutils-debuginfod-client-0.190-4.fc 8.3 MB/s | 38 kB 00:00 (26/152): elfutils-default-yama-scope-0.190-4.f 4.8 MB/s | 13 kB 00:00 (27/152): elfutils-0.190-4.fc40.s390x.rpm 59 MB/s | 571 kB 00:00 (28/152): elfutils-libelf-0.190-4.fc40.s390x.rp 29 MB/s | 200 kB 00:00 (29/152): elfutils-libs-0.190-4.fc40.s390x.rpm 42 MB/s | 276 kB 00:00 (30/152): fedora-gpg-keys-40-0.2.noarch.rpm 27 MB/s | 119 kB 00:00 (31/152): fedora-release-40-0.29.noarch.rpm 2.1 MB/s | 10 kB 00:00 (32/152): fedora-release-common-40-0.29.noarch. 5.2 MB/s | 21 kB 00:00 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kB 00:00 (48/152): glibc-2.38.9000-33.fc40.s390x.rpm 106 MB/s | 1.9 MB 00:00 (49/152): glibc-minimal-langpack-2.38.9000-33.f 19 MB/s | 95 kB 00:00 (50/152): glibc-gconv-extra-2.38.9000-33.fc40.s 134 MB/s | 1.7 MB 00:00 (51/152): gnat-srpm-macros-6-3.fc39.noarch.rpm 2.8 MB/s | 8.8 kB 00:00 (52/152): gmp-6.2.1-5.fc39.s390x.rpm 44 MB/s | 325 kB 00:00 (53/152): go-srpm-macros-3.3.1-1.fc40.noarch.rp 7.9 MB/s | 28 kB 00:00 (54/152): grep-3.11-5.fc40.s390x.rpm 41 MB/s | 294 kB 00:00 (55/152): gzip-1.12-6.fc39.s390x.rpm 30 MB/s | 166 kB 00:00 (56/152): info-7.1-1.fc40.s390x.rpm 33 MB/s | 195 kB 00:00 (57/152): jansson-2.13.1-7.fc39.s390x.rpm 9.1 MB/s | 44 kB 00:00 (58/152): kernel-srpm-macros-1.0-20.fc39.noarch 3.1 MB/s | 10 kB 00:00 (59/152): keyutils-libs-1.6.3-1.fc40.s390x.rpm 5.1 MB/s | 31 kB 00:00 (60/152): libacl-2.3.1-11.fc40.s390x.rpm 5.5 MB/s | 25 kB 00:00 (61/152): krb5-libs-1.21.2-3.fc40.s390x.rpm 87 MB/s | 780 kB 00:00 (62/152): libattr-2.5.2-1.fc40.s390x.rpm 4.6 MB/s | 18 kB 00:00 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libnghttp2-1.59.0-1.fc40.s390x.rpm 16 MB/s | 79 kB 00:00 (79/152): libpkgconf-1.9.5-2.fc39.s390x.rpm 6.8 MB/s | 38 kB 00:00 (80/152): libnsl2-2.0.0-6.fc39.s390x.rpm 4.7 MB/s | 30 kB 00:00 (81/152): libpwquality-1.4.5-6.fc39.s390x.rpm 21 MB/s | 109 kB 00:00 (82/152): libpsl-0.21.5-1.fc40.s390x.rpm 11 MB/s | 64 kB 00:00 (83/152): libsemanage-3.6-1.fc40.s390x.rpm 18 MB/s | 119 kB 00:00 (84/152): libselinux-3.6-2.fc40.s390x.rpm 10 MB/s | 92 kB 00:00 (85/152): libsmartcols-2.39.3-2.fc40.s390x.rpm 13 MB/s | 70 kB 00:00 (86/152): libsepol-3.6-1.fc40.s390x.rpm 36 MB/s | 346 kB 00:00 (87/152): libssh-config-0.10.6-2.fc40.noarch.rp 2.4 MB/s | 9.1 kB 00:00 (88/152): libssh-0.10.6-2.fc40.s390x.rpm 23 MB/s | 209 kB 00:00 (89/152): libtasn1-4.19.0-3.fc39.s390x.rpm 13 MB/s | 77 kB 00:00 (90/152): libstdc++-14.0.1-0.2.fc40.s390x.rpm 73 MB/s | 973 kB 00:00 (91/152): libtirpc-1.3.4-1.rc1.fc40.s390x.rpm 16 MB/s | 96 kB 00:00 (92/152): libutempter-1.2.1-10.fc39.s390x.rpm 5.5 MB/s | 26 kB 00:00 (93/152): 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gdb-minimal-14.1-5.fc40.s390x.rpm 6.9 MB/s | 4.2 MB 00:00 -------------------------------------------------------------------------------- Total 83 MB/s | 52 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-6.fc39.s390x 1/1 Preparing : 1/1 Installing : libgcc-14.0.1-0.2.fc40.s390x 1/152 Running scriptlet: libgcc-14.0.1-0.2.fc40.s390x 1/152 Installing : crypto-policies-20231204-1.git1e3a2e4.fc40.noarc 2/152 Running scriptlet: crypto-policies-20231204-1.git1e3a2e4.fc40.noarc 2/152 Installing : fedora-release-identity-basic-40-0.29.noarch 3/152 Installing : fedora-repos-rawhide-40-0.2.noarch 4/152 Installing : fedora-gpg-keys-40-0.2.noarch 5/152 Installing : fedora-repos-40-0.2.noarch 6/152 Installing : fedora-release-common-40-0.29.noarch 7/152 Installing : fedora-release-40-0.29.noarch 8/152 Installing : setup-2.14.5-1.fc40.noarch 9/152 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.5-1.fc40.noarch 9/152 Installing : filesystem-3.18-6.fc39.s390x 10/152 Installing : basesystem-11-18.fc39.noarch 11/152 Installing : rust-srpm-macros-25.2-2.fc40.noarch 12/152 Installing : qt6-srpm-macros-6.6.1-3.fc40.noarch 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Installing : bash-5.2.26-1.fc40.s390x 28/152 Running scriptlet: bash-5.2.26-1.fc40.s390x 28/152 Installing : zlib-ng-compat-2.1.6-1.fc40.s390x 29/152 Installing : xz-libs-5.4.5-1.fc40.s390x 30/152 Installing : bzip2-libs-1.0.8-16.fc39.s390x 31/152 Installing : readline-8.2-7.fc40.s390x 32/152 Installing : libstdc++-14.0.1-0.2.fc40.s390x 33/152 Installing : libuuid-2.39.3-2.fc40.s390x 34/152 Installing : libzstd-1.5.5-4.fc39.s390x 35/152 Installing : elfutils-libelf-0.190-4.fc40.s390x 36/152 Installing : popt-1.19-3.fc39.s390x 37/152 Installing : libblkid-2.39.3-2.fc40.s390x 38/152 Installing : gmp-1:6.2.1-5.fc39.s390x 39/152 Installing : libattr-2.5.2-1.fc40.s390x 40/152 Installing : libacl-2.3.1-11.fc40.s390x 41/152 Installing : libxcrypt-4.4.36-4.fc40.s390x 42/152 Installing : gdbm-libs-1:1.23-4.fc39.s390x 43/152 Installing : libeconf-0.5.2-1.fc40.s390x 44/152 Installing : lz4-libs-1.9.4-4.fc39.s390x 45/152 Installing : mpfr-4.2.1-1.fc40.s390x 46/152 Installing : 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Installing : patch-2.7.6-22.fc39.s390x 88/152 Installing : elfutils-default-yama-scope-0.190-4.fc40.noarch 89/152 Running scriptlet: elfutils-default-yama-scope-0.190-4.fc40.noarch 89/152 Installing : cpio-2.14-5.fc40.s390x 90/152 Installing : diffutils-3.10-3.fc39.s390x 91/152 Installing : keyutils-libs-1.6.3-1.fc40.s390x 92/152 Installing : libbrotli-1.1.0-1.fc40.s390x 93/152 Installing : libffi-3.4.4-5.fc40.s390x 94/152 Installing : p11-kit-0.25.3-1.fc40.s390x 95/152 Installing : p11-kit-trust-0.25.3-1.fc40.s390x 96/152 Running scriptlet: p11-kit-trust-0.25.3-1.fc40.s390x 96/152 Installing : libgomp-14.0.1-0.2.fc40.s390x 97/152 Installing : libnghttp2-1.59.0-1.fc40.s390x 98/152 Installing : libpkgconf-1.9.5-2.fc39.s390x 99/152 Installing : pkgconf-1.9.5-2.fc39.s390x 100/152 Installing : pkgconf-pkg-config-1.9.5-2.fc39.s390x 101/152 Installing : libverto-0.3.2-6.fc39.s390x 102/152 Installing : xxhash-libs-0.8.2-1.fc39.s390x 103/152 Installing : libssh-config-0.10.6-2.fc40.noarch 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rpm-libs-4.19.1-2.fc40.s390x 136/152 Running scriptlet: rpm-4.19.1-2.fc40.s390x 137/152 Installing : rpm-4.19.1-2.fc40.s390x 137/152 Installing : efi-srpm-macros-5-9.fc39.noarch 138/152 Installing : lua-srpm-macros-1-9.fc39.noarch 139/152 Installing : zig-srpm-macros-1-1.fc40.noarch 140/152 Installing : rpm-build-libs-4.19.1-2.fc40.s390x 141/152 Installing : ansible-srpm-macros-1-12.fc40.noarch 142/152 Installing : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 143/152 Installing : forge-srpm-macros-0.2.0-1.fc40.noarch 144/152 Installing : go-srpm-macros-3.3.1-1.fc40.noarch 145/152 Installing : python-srpm-macros-3.12-5.fc40.noarch 146/152 Installing : redhat-rpm-config-280-1.fc40.noarch 147/152 Installing : rpm-build-4.19.1-2.fc40.s390x 148/152 Installing : pyproject-srpm-macros-1.11.0-1.fc40.noarch 149/152 Installing : util-linux-2.39.3-2.fc40.s390x 150/152 Installing : which-2.21-40.fc39.s390x 151/152 Installing : info-7.1-1.fc40.s390x 152/152 Running scriptlet: filesystem-3.18-6.fc39.s390x 152/152 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 152/152 Running scriptlet: authselect-libs-1.5.0-1.fc40.s390x 152/152 Running scriptlet: rpm-4.19.1-2.fc40.s390x 152/152 Running scriptlet: info-7.1-1.fc40.s390x 152/152 Installed: alternatives-1.26-1.fc40.s390x ansible-srpm-macros-1-12.fc40.noarch audit-libs-4.0-1.fc40.s390x authselect-1.5.0-1.fc40.s390x authselect-libs-1.5.0-1.fc40.s390x basesystem-11-18.fc39.noarch bash-5.2.26-1.fc40.s390x binutils-2.41-30.fc40.s390x binutils-gold-2.41-30.fc40.s390x bzip2-1.0.8-16.fc39.s390x bzip2-libs-1.0.8-16.fc39.s390x ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch coreutils-9.4-3.fc40.s390x coreutils-common-9.4-3.fc40.s390x cpio-2.14-5.fc40.s390x cracklib-2.9.11-2.fc39.s390x crypto-policies-20231204-1.git1e3a2e4.fc40.noarch curl-8.5.0-1.fc40.s390x cyrus-sasl-lib-2.1.28-17.fc40.s390x debugedit-5.0-12.fc40.s390x diffutils-3.10-3.fc39.s390x dwz-0.15-3.fc39.s390x ed-1.20-1.fc40.s390x efi-srpm-macros-5-9.fc39.noarch elfutils-0.190-4.fc40.s390x elfutils-debuginfod-client-0.190-4.fc40.s390x elfutils-default-yama-scope-0.190-4.fc40.noarch elfutils-libelf-0.190-4.fc40.s390x elfutils-libs-0.190-4.fc40.s390x fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.29.noarch fedora-release-common-40-0.29.noarch fedora-release-identity-basic-40-0.29.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-1.fc40.s390x file-libs-5.45-1.fc40.s390x filesystem-3.18-6.fc39.s390x findutils-1:4.9.0-6.fc40.s390x fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.2.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.3.0-1.fc40.s390x gdb-minimal-14.1-5.fc40.s390x gdbm-1:1.23-4.fc39.s390x gdbm-libs-1:1.23-4.fc39.s390x ghc-srpm-macros-1.6.1-3.fc40.noarch glibc-2.38.9000-33.fc40.s390x glibc-common-2.38.9000-33.fc40.s390x glibc-gconv-extra-2.38.9000-33.fc40.s390x glibc-minimal-langpack-2.38.9000-33.fc40.s390x gmp-1:6.2.1-5.fc39.s390x gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.1-1.fc40.noarch grep-3.11-5.fc40.s390x gzip-1.12-6.fc39.s390x info-7.1-1.fc40.s390x jansson-2.13.1-7.fc39.s390x kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc40.s390x krb5-libs-1.21.2-3.fc40.s390x libacl-2.3.1-11.fc40.s390x libarchive-3.7.2-1.fc40.s390x libattr-2.5.2-1.fc40.s390x libblkid-2.39.3-2.fc40.s390x libbrotli-1.1.0-1.fc40.s390x libcap-2.69-1.fc40.s390x libcap-ng-0.8.4-2.fc40.s390x libcom_err-1.47.0-2.fc39.s390x libcurl-8.5.0-1.fc40.s390x libeconf-0.5.2-1.fc40.s390x libevent-2.1.12-9.fc39.s390x libfdisk-2.39.3-2.fc40.s390x libffi-3.4.4-5.fc40.s390x libgcc-14.0.1-0.2.fc40.s390x libgomp-14.0.1-0.2.fc40.s390x libidn2-2.3.4-3.fc39.s390x libmount-2.39.3-2.fc40.s390x libnghttp2-1.59.0-1.fc40.s390x libnsl2-2.0.0-6.fc39.s390x libpkgconf-1.9.5-2.fc39.s390x libpsl-0.21.5-1.fc40.s390x libpwquality-1.4.5-6.fc39.s390x libselinux-3.6-2.fc40.s390x libsemanage-3.6-1.fc40.s390x libsepol-3.6-1.fc40.s390x libsmartcols-2.39.3-2.fc40.s390x libssh-0.10.6-2.fc40.s390x libssh-config-0.10.6-2.fc40.noarch libstdc++-14.0.1-0.2.fc40.s390x libtasn1-4.19.0-3.fc39.s390x libtirpc-1.3.4-1.rc1.fc40.s390x libunistring-1.1-5.fc40.s390x libutempter-1.2.1-10.fc39.s390x libuuid-2.39.3-2.fc40.s390x libverto-0.3.2-6.fc39.s390x libxcrypt-4.4.36-4.fc40.s390x libxml2-2.12.4-1.fc40.s390x libzstd-1.5.5-4.fc39.s390x lua-libs-5.4.6-3.fc39.s390x lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.s390x mpfr-4.2.1-1.fc40.s390x ncurses-base-6.4-9.20240113.fc40.noarch ncurses-libs-6.4-9.20240113.fc40.s390x ocaml-srpm-macros-9-1.fc40.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.s390x openssl-libs-1:3.1.4-1.fc40.s390x p11-kit-0.25.3-1.fc40.s390x p11-kit-trust-0.25.3-1.fc40.s390x package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-9.fc40.s390x pam-libs-1.5.3-9.fc40.s390x patch-2.7.6-22.fc39.s390x pcre2-10.42-2.fc40.s390x pcre2-syntax-10.42-2.fc40.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.s390x pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.s390x popt-1.19-3.fc39.s390x publicsuffix-list-dafsa-20240107-1.fc40.noarch pyproject-srpm-macros-1.11.0-1.fc40.noarch python-srpm-macros-3.12-5.fc40.noarch qt5-srpm-macros-5.15.12-1.fc40.noarch qt6-srpm-macros-6.6.1-3.fc40.noarch readline-8.2-7.fc40.s390x redhat-rpm-config-280-1.fc40.noarch rpm-4.19.1-2.fc40.s390x rpm-build-4.19.1-2.fc40.s390x rpm-build-libs-4.19.1-2.fc40.s390x rpm-libs-4.19.1-2.fc40.s390x rpm-sequoia-1.5.0-2.fc40.s390x rust-srpm-macros-25.2-2.fc40.noarch sed-4.8-14.fc39.s390x setup-2.14.5-1.fc40.noarch shadow-utils-2:4.14.0-2.fc40.s390x sqlite-libs-3.45.0-1.fc40.s390x systemd-libs-255.2-2.fc40.s390x tar-2:1.35-2.fc40.s390x unzip-6.0-62.fc39.s390x util-linux-2.39.3-2.fc40.s390x util-linux-core-2.39.3-2.fc40.s390x which-2.21-40.fc39.s390x xxhash-libs-0.8.2-1.fc39.s390x xz-5.4.5-1.fc40.s390x xz-libs-5.4.5-1.fc40.s390x zig-srpm-macros-1-1.fc40.noarch zip-3.0-39.fc40.s390x zlib-ng-compat-2.1.6-1.fc40.s390x zstd-1.5.5-4.fc39.s390x Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-1.fc40.s390x ansible-srpm-macros-1-12.fc40.noarch audit-libs-4.0-1.fc40.s390x authselect-1.5.0-1.fc40.s390x authselect-libs-1.5.0-1.fc40.s390x basesystem-11-18.fc39.noarch bash-5.2.26-1.fc40.s390x binutils-2.41-30.fc40.s390x binutils-gold-2.41-30.fc40.s390x bzip2-1.0.8-16.fc39.s390x bzip2-libs-1.0.8-16.fc39.s390x ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch coreutils-9.4-3.fc40.s390x coreutils-common-9.4-3.fc40.s390x cpio-2.14-5.fc40.s390x cracklib-2.9.11-2.fc39.s390x crypto-policies-20231204-1.git1e3a2e4.fc40.noarch curl-8.5.0-1.fc40.s390x cyrus-sasl-lib-2.1.28-17.fc40.s390x debugedit-5.0-12.fc40.s390x diffutils-3.10-3.fc39.s390x dwz-0.15-3.fc39.s390x ed-1.20-1.fc40.s390x efi-srpm-macros-5-9.fc39.noarch elfutils-0.190-4.fc40.s390x elfutils-debuginfod-client-0.190-4.fc40.s390x elfutils-default-yama-scope-0.190-4.fc40.noarch elfutils-libelf-0.190-4.fc40.s390x elfutils-libs-0.190-4.fc40.s390x fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.29.noarch fedora-release-common-40-0.29.noarch fedora-release-identity-basic-40-0.29.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-1.fc40.s390x file-libs-5.45-1.fc40.s390x filesystem-3.18-6.fc39.s390x findutils-4.9.0-6.fc40.s390x fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.2.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.3.0-1.fc40.s390x gdb-minimal-14.1-5.fc40.s390x gdbm-1.23-4.fc39.s390x gdbm-libs-1.23-4.fc39.s390x ghc-srpm-macros-1.6.1-3.fc40.noarch glibc-2.38.9000-33.fc40.s390x glibc-common-2.38.9000-33.fc40.s390x glibc-gconv-extra-2.38.9000-33.fc40.s390x glibc-minimal-langpack-2.38.9000-33.fc40.s390x gmp-6.2.1-5.fc39.s390x gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.1-1.fc40.noarch grep-3.11-5.fc40.s390x gzip-1.12-6.fc39.s390x info-7.1-1.fc40.s390x jansson-2.13.1-7.fc39.s390x kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc40.s390x krb5-libs-1.21.2-3.fc40.s390x libacl-2.3.1-11.fc40.s390x libarchive-3.7.2-1.fc40.s390x libattr-2.5.2-1.fc40.s390x libblkid-2.39.3-2.fc40.s390x libbrotli-1.1.0-1.fc40.s390x libcap-2.69-1.fc40.s390x libcap-ng-0.8.4-2.fc40.s390x libcom_err-1.47.0-2.fc39.s390x libcurl-8.5.0-1.fc40.s390x libeconf-0.5.2-1.fc40.s390x libevent-2.1.12-9.fc39.s390x libfdisk-2.39.3-2.fc40.s390x libffi-3.4.4-5.fc40.s390x libgcc-14.0.1-0.2.fc40.s390x libgomp-14.0.1-0.2.fc40.s390x libidn2-2.3.4-3.fc39.s390x libmount-2.39.3-2.fc40.s390x libnghttp2-1.59.0-1.fc40.s390x libnsl2-2.0.0-6.fc39.s390x libpkgconf-1.9.5-2.fc39.s390x libpsl-0.21.5-1.fc40.s390x libpwquality-1.4.5-6.fc39.s390x libselinux-3.6-2.fc40.s390x libsemanage-3.6-1.fc40.s390x libsepol-3.6-1.fc40.s390x libsmartcols-2.39.3-2.fc40.s390x libssh-0.10.6-2.fc40.s390x libssh-config-0.10.6-2.fc40.noarch libstdc++-14.0.1-0.2.fc40.s390x libtasn1-4.19.0-3.fc39.s390x libtirpc-1.3.4-1.rc1.fc40.s390x libunistring-1.1-5.fc40.s390x libutempter-1.2.1-10.fc39.s390x libuuid-2.39.3-2.fc40.s390x libverto-0.3.2-6.fc39.s390x libxcrypt-4.4.36-4.fc40.s390x libxml2-2.12.4-1.fc40.s390x libzstd-1.5.5-4.fc39.s390x lua-libs-5.4.6-3.fc39.s390x lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.s390x mpfr-4.2.1-1.fc40.s390x ncurses-base-6.4-9.20240113.fc40.noarch ncurses-libs-6.4-9.20240113.fc40.s390x ocaml-srpm-macros-9-1.fc40.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.s390x openssl-libs-3.1.4-1.fc40.s390x p11-kit-0.25.3-1.fc40.s390x p11-kit-trust-0.25.3-1.fc40.s390x package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-9.fc40.s390x pam-libs-1.5.3-9.fc40.s390x patch-2.7.6-22.fc39.s390x pcre2-10.42-2.fc40.s390x pcre2-syntax-10.42-2.fc40.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.s390x pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.s390x popt-1.19-3.fc39.s390x publicsuffix-list-dafsa-20240107-1.fc40.noarch pyproject-srpm-macros-1.11.0-1.fc40.noarch python-srpm-macros-3.12-5.fc40.noarch qt5-srpm-macros-5.15.12-1.fc40.noarch qt6-srpm-macros-6.6.1-3.fc40.noarch readline-8.2-7.fc40.s390x redhat-rpm-config-280-1.fc40.noarch rpm-4.19.1-2.fc40.s390x rpm-build-4.19.1-2.fc40.s390x rpm-build-libs-4.19.1-2.fc40.s390x rpm-libs-4.19.1-2.fc40.s390x rpm-sequoia-1.5.0-2.fc40.s390x rust-srpm-macros-25.2-2.fc40.noarch sed-4.8-14.fc39.s390x setup-2.14.5-1.fc40.noarch shadow-utils-4.14.0-2.fc40.s390x sqlite-libs-3.45.0-1.fc40.s390x systemd-libs-255.2-2.fc40.s390x tar-1.35-2.fc40.s390x unzip-6.0-62.fc39.s390x util-linux-2.39.3-2.fc40.s390x util-linux-core-2.39.3-2.fc40.s390x which-2.21-40.fc39.s390x xxhash-libs-0.8.2-1.fc39.s390x xz-5.4.5-1.fc40.s390x xz-libs-5.4.5-1.fc40.s390x zig-srpm-macros-1-1.fc40.noarch zip-3.0-39.fc40.s390x zlib-ng-compat-2.1.6-1.fc40.s390x zstd-1.5.5-4.fc39.s390x Start: buildsrpm Start: rpmbuild -bs Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1705881600 Wrote: /builddir/build/SRPMS/R-rtracklayer-1.56.1-6.fc40.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-s390x-1706029470.817520/root/var/log/dnf.rpm.log /var/lib/mock/fedora-39-s390x-1706029470.817520/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-s390x-1706029470.817520/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-_hei6kli/R-rtracklayer/R-rtracklayer.spec) Config(child) 3 minutes 12 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-rtracklayer-1.56.1-6.fc40.src.rpm) Config(fedora-39-s390x) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-s390x-bootstrap-1706029470.817520/root. INFO: reusing tmpfs at /var/lib/mock/fedora-39-s390x-bootstrap-1706029470.817520/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-s390x-1706029470.817520/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.0-1.fc39.s390x rpm-sequoia-1.5.0-1.fc39.s390x python3-dnf-4.18.2-1.fc40.noarch python3-dnf-plugins-core-4.4.4-1.fc40.noarch yum-4.18.2-1.fc40.noarch Finish: chroot init Start: build phase for R-rtracklayer-1.56.1-6.fc40.src.rpm Start: build setup for R-rtracklayer-1.56.1-6.fc40.src.rpm Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1705881600 Wrote: /builddir/build/SRPMS/R-rtracklayer-1.56.1-6.fc40.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 4.5 kB/s | 1.5 kB 00:00 Copr repository 15 MB/s | 17 MB 00:01 Additional repo http_kojipkgs_fedoraproject_org 117 kB/s | 3.8 kB 00:00 fedora 749 B/s | 3.8 kB 00:05 updates 89 kB/s | 4.8 kB 00:00 Dependencies resolved. ===================================================================================================================================================== Package Arch Version Repository Size ===================================================================================================================================================== Installing: R-BiocGenerics noarch 0.42.0-6.fc40 copr_base 642 k R-BiocIO noarch 1.6.0-6.fc40 copr_base 401 k R-Biostrings-devel s390x 2.64.1-6.fc40 copr_base 13 k R-GenomeInfoDb noarch 1.32.3-6.fc40 copr_base 3.8 M R-GenomicAlignments s390x 1.32.1-6.fc40 copr_base 2.1 M R-GenomicRanges s390x 1.48.0-6.fc40 copr_base 2.0 M R-IRanges-devel s390x 2.30.1-6.fc40 copr_base 10 k R-RCurl s390x 1.98.1.8-5.fc40 copr_base 863 k R-Rsamtools s390x 2.12.0-6.fc40 copr_base 3.7 M R-S4Vectors-devel s390x 0.34.0-6.fc40 copr_base 14 k R-XML s390x 3.99.0.15-2.fc40 copr_base 1.8 M R-XVector-devel s390x 0.36.0-6.fc40 copr_base 11 k R-core s390x 4.3.2-4.fc40 copr_base 62 M R-devel s390x 4.3.2-4.fc40 copr_base 11 k R-restfulr s390x 0.0.15-6.fc40 copr_base 389 k openssl-devel s390x 1:3.1.4-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.5 M zlib-ng-compat-devel s390x 2.1.6-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 36 k Installing dependencies: R-Biobase s390x 2.56.0-6.fc40 copr_base 2.1 M R-BiocParallel s390x 1.30.3-6.fc40 copr_base 1.5 M R-Biostrings s390x 2.64.1-6.fc40 copr_base 13 M R-DelayedArray s390x 0.22.0-9.fc40 copr_base 2.1 M R-GenomeInfoDbData noarch 1.2.8-6.fc40 copr_base 11 M R-IRanges s390x 2.30.1-6.fc40 copr_base 2.3 M R-MatrixGenerics noarch 1.8.1-6.fc40 copr_base 362 k R-S4Vectors s390x 0.34.0-6.fc40 copr_base 2.1 M R-SummarizedExperiment noarch 1.26.1-6.fc40 copr_base 2.2 M R-XVector s390x 0.36.0-6.fc40 copr_base 648 k R-bitops s390x 1.0.7-11.fc40 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Installing : perl-Data-OptList-0.114-2.fc39.noarch 228/716 Installing : perl-Mail-Sendmail-0.80-18.fc39.noarch 229/716 Installing : perl-Text-BibTeX-0.89-3.fc39.s390x 230/716 Installing : perl-Unicode-Collate-1.31-500.fc39.s390x 231/716 Installing : perl-Unicode-UCD-0.78-504.fc40.noarch 232/716 Installing : perl-List-SomeUtils-0.59-3.fc39.noarch 233/716 Installing : perl-Params-Validate-1.31-5.fc39.s390x 234/716 Installing : perl-Module-CoreList-1:5.20231230-1.fc40.noarch 235/716 Installing : perl-Module-Metadata-1.000038-3.fc39.noarch 236/716 Installing : perl-Date-Manip-6.94-1.fc40.noarch 237/716 Installing : perl-Lingua-Translit-0.29-4.fc39.noarch 238/716 Installing : perl-Pod-Html-1.34-504.fc40.noarch 239/716 Installing : perl-Business-ISSN-1.005-8.fc39.noarch 240/716 Installing : perl-Class-Accessor-0.51-18.fc39.noarch 241/716 Installing : perl-Class-Data-Inheritable-0.09-6.fc39.noarch 242/716 Installing : perl-Exception-Class-1.45-8.fc39.noarch 243/716 Installing : 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R-BiocGenerics-0.42.0-6.fc40.noarch 694/716 Installing : R-Biobase-2.56.0-6.fc40.s390x 695/716 Installing : R-Biostrings-2.64.1-6.fc40.s390x 696/716 Installing : R-GenomeInfoDb-1.32.3-6.fc40.noarch 697/716 Installing : R-GenomicAlignments-1.32.1-6.fc40.s390x 698/716 Installing : R-GenomicRanges-1.48.0-6.fc40.s390x 699/716 Installing : R-IRanges-2.30.1-6.fc40.s390x 700/716 Installing : R-Rsamtools-2.12.0-6.fc40.s390x 701/716 Installing : R-XVector-0.36.0-6.fc40.s390x 702/716 Installing : R-S4Vectors-0.34.0-6.fc40.s390x 703/716 Installing : R-SummarizedExperiment-1.26.1-6.fc40.noarch 704/716 Installing : R-core-devel-4.3.2-4.fc40.s390x 705/716 Installing : R-java-devel-4.3.2-4.fc40.s390x 706/716 Installing : R-devel-4.3.2-4.fc40.s390x 707/716 Installing : R-BiocIO-1.6.0-6.fc40.noarch 708/716 Installing : R-S4Vectors-devel-0.34.0-6.fc40.s390x 709/716 Installing : R-restfulr-0.0.15-6.fc40.s390x 710/716 Installing : R-XVector-devel-0.36.0-6.fc40.s390x 711/716 Installing : R-IRanges-devel-2.30.1-6.fc40.s390x 712/716 Installing : R-Biostrings-devel-2.64.1-6.fc40.s390x 713/716 Installing : annobin-plugin-gcc-12.38-1.fc40.s390x 714/716 Running scriptlet: annobin-plugin-gcc-12.38-1.fc40.s390x 714/716 Installing : gcc-plugin-annobin-14.0.1-0.2.fc40.s390x 715/716 Running scriptlet: gcc-plugin-annobin-14.0.1-0.2.fc40.s390x 715/716 Installing : openssl-devel-1:3.1.4-1.fc40.s390x 716/716 Running scriptlet: texlive-base-11:20230311-79.fc40.s390x 716/716 Running scriptlet: urw-base35-bookman-fonts-20200910-18.fc39.noarch 716/716 Running scriptlet: urw-base35-c059-fonts-20200910-18.fc39.noarch 716/716 Running scriptlet: urw-base35-d050000l-fonts-20200910-18.fc39.noarc 716/716 Running scriptlet: urw-base35-gothic-fonts-20200910-18.fc39.noarch 716/716 Running scriptlet: urw-base35-nimbus-mono-ps-fonts-20200910-18.fc39 716/716 Running scriptlet: urw-base35-nimbus-roman-fonts-20200910-18.fc39.n 716/716 Running scriptlet: urw-base35-nimbus-sans-fonts-20200910-18.fc39.no 716/716 Running scriptlet: urw-base35-p052-fonts-20200910-18.fc39.noarch 716/716 Running scriptlet: urw-base35-standard-symbols-ps-fonts-20200910-18 716/716 Running scriptlet: urw-base35-z003-fonts-20200910-18.fc39.noarch 716/716 Running scriptlet: copy-jdk-configs-4.1-3.fc39.noarch 716/716 Running scriptlet: crypto-policies-scripts-20231204-1.git1e3a2e4.fc 716/716 Running scriptlet: nss-3.96.1-1.fc40.s390x 716/716 Running scriptlet: fontconfig-2.15.0-1.fc40.s390x 716/716 Running scriptlet: java-17-openjdk-headless-1:17.0.9.0.9-3.fc40.s39 716/716 Running scriptlet: java-17-openjdk-1:17.0.9.0.9-3.fc40.s390x 716/716 Running scriptlet: java-17-openjdk-devel-1:17.0.9.0.9-3.fc40.s390x 716/716 Running scriptlet: openssl-devel-1:3.1.4-1.fc40.s390x 716/716 Installed: R-Biobase-2.56.0-6.fc40.s390x R-BiocGenerics-0.42.0-6.fc40.noarch R-BiocIO-1.6.0-6.fc40.noarch R-BiocParallel-1.30.3-6.fc40.s390x R-Biostrings-2.64.1-6.fc40.s390x R-Biostrings-devel-2.64.1-6.fc40.s390x R-DelayedArray-0.22.0-9.fc40.s390x R-GenomeInfoDb-1.32.3-6.fc40.noarch R-GenomeInfoDbData-1.2.8-6.fc40.noarch R-GenomicAlignments-1.32.1-6.fc40.s390x R-GenomicRanges-1.48.0-6.fc40.s390x R-IRanges-2.30.1-6.fc40.s390x R-IRanges-devel-2.30.1-6.fc40.s390x R-MatrixGenerics-1.8.1-6.fc40.noarch R-RCurl-1.98.1.8-5.fc40.s390x R-Rsamtools-2.12.0-6.fc40.s390x R-S4Vectors-0.34.0-6.fc40.s390x R-S4Vectors-devel-0.34.0-6.fc40.s390x R-SummarizedExperiment-1.26.1-6.fc40.noarch R-XML-3.99.0.15-2.fc40.s390x R-XVector-0.36.0-6.fc40.s390x R-XVector-devel-0.36.0-6.fc40.s390x R-bitops-1.0.7-11.fc40.s390x R-core-4.3.2-4.fc40.s390x R-core-devel-4.3.2-4.fc40.s390x R-crayon-1.5.1-6.fc40.noarch R-devel-4.3.2-4.fc40.s390x R-formatR-1.13-5.fc39.noarch R-futile.logger-1.4.3-22.fc40.noarch R-futile.options-1.0.1-15.fc40.noarch R-java-4.3.2-4.fc40.s390x R-java-devel-4.3.2-4.fc40.s390x R-lambda.r-1.2.4-15.fc40.noarch R-matrixStats-0.62.0-6.fc40.s390x R-restfulr-0.0.15-6.fc40.s390x R-rjson-0.2.21-6.fc40.s390x R-rpm-macros-1.2.1-7.fc39.noarch R-snow-0.4.4-13.fc39.noarch R-yaml-2.3.5-5.fc40.s390x abattis-cantarell-vf-fonts-0.301-10.fc39.noarch adobe-mappings-cmap-20230622-1.fc39.noarch adobe-mappings-cmap-deprecated-20230622-1.fc39.noarch adobe-mappings-pdf-20190401-5.fc39.noarch alsa-lib-1.2.10-3.fc40.s390x annobin-docs-12.38-1.fc40.noarch annobin-plugin-gcc-12.38-1.fc40.s390x avahi-libs-0.8-24.fc39.s390x biber-2.19-3.fc39.noarch brotli-1.1.0-1.fc40.s390x brotli-devel-1.1.0-1.fc40.s390x bzip2-devel-1.0.8-16.fc39.s390x cairo-1.18.0-1.fc40.s390x cmake-filesystem-3.27.7-1.fc40.s390x copy-jdk-configs-4.1-3.fc39.noarch cpp-14.0.1-0.2.fc40.s390x crypto-policies-scripts-20231204-1.git1e3a2e4.fc40.noarch cups-libs-1:2.4.7-7.fc40.s390x dbus-libs-1:1.14.10-1.fc40.s390x default-fonts-core-sans-4.0-9.fc40.noarch desktop-file-utils-0.26-9.fc39.s390x emacs-filesystem-1:29.2-2.fc40.noarch expat-2.5.0-3.fc39.s390x flexiblas-3.4.1-2.fc40.s390x flexiblas-devel-3.4.1-2.fc40.s390x flexiblas-netlib-3.4.1-2.fc40.s390x flexiblas-netlib64-3.4.1-2.fc40.s390x flexiblas-openblas-openmp-3.4.1-2.fc40.s390x flexiblas-openblas-openmp64-3.4.1-2.fc40.s390x fontconfig-2.15.0-1.fc40.s390x fontconfig-devel-2.15.0-1.fc40.s390x fonts-filesystem-1:2.0.5-12.fc39.noarch freetype-2.13.2-1.fc40.s390x freetype-devel-2.13.2-1.fc40.s390x fribidi-1.0.13-2.fc39.s390x gc-8.2.2-4.fc39.s390x gcc-14.0.1-0.2.fc40.s390x gcc-c++-14.0.1-0.2.fc40.s390x gcc-gfortran-14.0.1-0.2.fc40.s390x gcc-plugin-annobin-14.0.1-0.2.fc40.s390x gettext-0.22-2.fc39.s390x gettext-envsubst-0.22-2.fc39.s390x gettext-libs-0.22-2.fc39.s390x gettext-runtime-0.22-2.fc39.s390x ghostscript-10.02.1-7.fc40.s390x ghostscript-tools-fonts-10.02.1-7.fc40.noarch ghostscript-tools-printing-10.02.1-7.fc40.noarch glib2-2.79.0-6.fc40.s390x glib2-devel-2.79.0-6.fc40.s390x glibc-devel-2.38.9000-33.fc40.s390x glibc-headers-s390-2.38.9000-33.fc40.noarch gnutls-3.8.2-2.fc40.s390x google-droid-sans-fonts-20200215-17.fc40.noarch google-noto-fonts-common-20230801-4.fc40.noarch google-noto-sans-vf-fonts-20230801-4.fc40.noarch graphite2-1.3.14-14.fc40.s390x graphite2-devel-1.3.14-14.fc40.s390x groff-base-1.23.0-4.fc40.s390x guile22-2.2.7-9.fc39.s390x harfbuzz-8.3.0-2.fc40.s390x harfbuzz-devel-8.3.0-2.fc40.s390x harfbuzz-icu-8.3.0-2.fc40.s390x java-17-openjdk-1:17.0.9.0.9-3.fc40.s390x java-17-openjdk-devel-1:17.0.9.0.9-3.fc40.s390x java-17-openjdk-headless-1:17.0.9.0.9-3.fc40.s390x javapackages-filesystem-6.2.0-5.fc40.noarch jbig2dec-libs-0.20-1.fc40.s390x jbigkit-libs-2.1-27.fc40.s390x kernel-headers-6.8.0-0.rc1.12.fc40.s390x lcms2-2.16-2.fc40.s390x libICE-1.1.1-1.fc40.s390x libRmath-4.3.2-4.fc40.s390x libRmath-devel-4.3.2-4.fc40.s390x libSM-1.2.4-1.fc40.s390x libX11-1.8.7-1.fc40.s390x libX11-common-1.8.7-1.fc40.noarch libX11-devel-1.8.7-1.fc40.s390x libX11-xcb-1.8.7-1.fc40.s390x libXau-1.0.11-4.fc40.s390x libXau-devel-1.0.11-4.fc40.s390x libXaw-1.0.15-1.fc40.s390x libXcomposite-0.4.6-1.fc40.s390x 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perl-Net-SMTP-SSL-1.04-22.fc40.noarch perl-Net-SSLeay-1.94-1.fc40.s390x perl-Number-Compare-0.03-36.fc39.noarch perl-Opcode-1.64-504.fc40.s390x perl-POSIX-2.13-504.fc40.s390x perl-Package-Generator-1.106-29.fc39.noarch perl-Package-Stash-0.40-5.fc39.noarch perl-Package-Stash-XS-0.30-5.fc39.s390x perl-PadWalker-2.5-10.fc39.s390x perl-Params-Check-1:0.38-500.fc39.noarch perl-Params-Classify-0.015-20.fc39.s390x perl-Params-Util-1.102-12.fc39.s390x perl-Params-Validate-1.31-5.fc39.s390x perl-Params-ValidationCompiler-0.31-3.fc39.noarch perl-Parse-RecDescent-1.967015-20.fc39.noarch perl-PathTools-3.89-500.fc39.s390x perl-Pod-Escapes-1:1.07-501.fc40.noarch perl-Pod-Html-1.34-504.fc40.noarch perl-Pod-Perldoc-3.28.01-501.fc39.noarch perl-Pod-Simple-1:3.45-4.fc39.noarch perl-Pod-Usage-4:2.03-500.fc39.noarch perl-Ref-Util-0.204-18.fc39.noarch perl-Ref-Util-XS-0.117-20.fc39.s390x perl-Regexp-Common-2017060201-22.fc39.noarch perl-Role-Tiny-2.002004-9.fc39.noarch perl-Safe-2.44-504.fc40.noarch perl-Scalar-List-Utils-5:1.63-500.fc39.s390x perl-SelectSaver-1.02-504.fc40.noarch perl-Socket-4:2.037-3.fc39.s390x perl-Sort-Key-1.33-28.fc39.s390x perl-Specio-0.48-4.fc39.noarch perl-Storable-1:3.32-500.fc39.s390x perl-Sub-Exporter-0.991-1.fc40.noarch perl-Sub-Exporter-Progressive-0.001013-22.fc39.noarch perl-Sub-Identify-0.14-24.fc39.s390x perl-Sub-Install-0.929-3.fc39.noarch perl-Symbol-1.09-504.fc40.noarch perl-Sys-Hostname-1.25-504.fc40.s390x perl-Sys-Syslog-0.36-502.fc40.s390x perl-Term-ANSIColor-5.01-502.fc40.noarch perl-Term-Cap-1.18-500.fc39.noarch perl-Text-Balanced-2.06-500.fc39.noarch perl-Text-BibTeX-0.89-3.fc39.s390x perl-Text-CSV-2.03-1.fc40.noarch perl-Text-Glob-0.11-21.fc39.noarch perl-Text-ParseWords-3.31-500.fc39.noarch perl-Text-Roman-3.5-25.fc39.noarch perl-Text-Soundex-3.05-28.fc39.s390x perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch perl-Text-Unidecode-1.30-22.fc39.noarch perl-Tie-4.6-504.fc40.noarch perl-Tie-Cycle-1.227-9.fc39.noarch perl-Tie-RefHash-1.40-500.fc39.noarch perl-Time-HiRes-4:1.9775-500.fc39.s390x perl-Time-Local-2:1.350-3.fc39.noarch perl-TimeDate-1:2.33-11.fc39.noarch perl-Try-Tiny-0.31-6.fc39.noarch perl-URI-5.21-1.fc40.noarch perl-Unicode-Collate-1.31-500.fc39.s390x perl-Unicode-LineBreak-2019.001-18.fc39.s390x perl-Unicode-Normalize-1.32-500.fc39.s390x perl-Unicode-UCD-0.78-504.fc40.noarch perl-Variable-Magic-0.63-4.fc39.s390x perl-WWW-RobotRules-6.02-37.fc39.noarch perl-XML-LibXML-1:2.0209-3.fc40.s390x perl-XML-LibXML-Simple-1.01-12.fc39.noarch perl-XML-LibXSLT-2.002.001-3.fc39.s390x perl-XML-NamespaceSupport-1.12-21.fc40.noarch perl-XML-Parser-2.47-1.fc40.s390x perl-XML-SAX-1.02-13.fc39.noarch perl-XML-SAX-Base-1.09-21.fc40.noarch perl-XML-Writer-0.900-12.fc39.noarch perl-XML-XPath-1.48-4.fc39.noarch perl-XString-0.005-10.fc39.s390x perl-autodie-2.37-1.fc40.noarch perl-autovivification-0.18-20.fc39.s390x perl-base-2.27-504.fc40.noarch perl-constant-1.33-501.fc39.noarch perl-deprecate-0.04-504.fc40.noarch perl-encoding-4:3.00-501.fc40.s390x perl-if-0.61.000-504.fc40.noarch perl-interpreter-4:5.38.2-504.fc40.s390x perl-libnet-3.15-501.fc39.noarch perl-libs-4:5.38.2-504.fc40.s390x perl-libwww-perl-6.73-1.fc40.noarch perl-locale-1.10-504.fc40.noarch perl-meta-notation-5.38.2-504.fc40.noarch perl-mro-1.28-504.fc40.s390x perl-namespace-autoclean-0.29-16.fc39.noarch perl-namespace-clean-0.27-24.fc39.noarch perl-open-1.13-504.fc40.noarch perl-overload-1.37-504.fc40.noarch perl-overloading-0.02-504.fc40.noarch perl-parent-1:0.241-500.fc39.noarch perl-podlators-1:5.01-500.fc39.noarch perl-sigtrap-1.10-504.fc40.noarch perl-subs-1.04-504.fc40.noarch perl-vars-1.05-504.fc40.noarch perl-version-8:0.99.30-1.fc40.s390x perltidy-20230912-1.fc40.noarch pixman-0.43.0-1.fc40.s390x python-pip-wheel-23.3.1-3.fc40.noarch python3-3.12.1-2.fc40.s390x python3-libs-3.12.1-2.fc40.s390x python3-packaging-23.2-2.fc40.noarch sombok-2.4.0-20.fc39.s390x 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texlive-etoolbox-11:svn56554-70.fc40.noarch texlive-euenc-11:svn19795.0.1h-70.fc40.noarch texlive-euler-11:svn42428-70.fc40.noarch texlive-everysel-11:svn57489-70.fc40.noarch texlive-everyshi-11:svn57001-70.fc40.noarch texlive-extsizes-11:svn17263.1.4a-70.fc40.noarch texlive-fancybox-11:svn18304.1.4-70.fc40.noarch texlive-fancyhdr-11:svn64977-70.fc40.noarch texlive-fancyref-11:svn15878.0.9c-70.fc40.noarch texlive-fancyvrb-11:svn65585-70.fc40.noarch texlive-filecontents-11:svn52142-70.fc40.noarch texlive-filehook-11:svn64822-70.fc40.noarch texlive-finstrut-11:svn21719.0.5-70.fc40.noarch texlive-firstaid-11:svn64892-70.fc40.noarch texlive-fix2col-11:svn38770-70.fc40.noarch texlive-float-11:svn15878.1.3d-70.fc40.noarch texlive-fontspec-11:svn63386-70.fc40.noarch texlive-footmisc-11:svn62524-70.fc40.noarch texlive-footnotehyper-11:svn60374-70.fc40.noarch texlive-fp-11:svn49719-70.fc40.noarch texlive-fpl-11:svn54512-70.fc40.noarch texlive-geometry-11:svn61719-70.fc40.noarch 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texlive-infwarerr-11:svn53023-70.fc40.noarch texlive-intcalc-11:svn53168-70.fc40.noarch texlive-jknapltx-11:svn19440.0-70.fc40.noarch texlive-kastrup-11:svn15878.0-70.fc40.noarch texlive-knuth-lib-11:svn57963-70.fc40.noarch texlive-knuth-local-11:svn57963-70.fc40.noarch texlive-koma-script-11:svn64685-70.fc40.noarch texlive-kpathsea-11:svn66209-79.fc40.s390x texlive-kvdefinekeys-11:svn53193-70.fc40.noarch texlive-kvoptions-11:svn63622-70.fc40.noarch texlive-kvsetkeys-11:svn64632-70.fc40.noarch texlive-l3backend-11:svn65573-70.fc40.noarch texlive-l3experimental-11:svn65621-70.fc40.noarch texlive-l3kernel-11:svn66094-70.fc40.noarch texlive-l3packages-11:svn65722-70.fc40.noarch texlive-latex-11:svn65161-79.fc40.noarch texlive-latex-fonts-11:svn28888.0-70.fc40.noarch texlive-latex-lab-11:svn64892-70.fc40.noarch texlive-latexbug-11:svn63596-70.fc40.noarch texlive-latexconfig-11:svn53525-70.fc40.noarch texlive-letltxmacro-11:svn53022-70.fc40.noarch texlive-lib-11:20230311-79.fc40.s390x texlive-lineno-11:svn65586-70.fc40.noarch texlive-listings-11:svn66222-70.fc40.noarch texlive-lm-11:svn65956-70.fc40.noarch texlive-lm-math-11:svn36915.1.959-70.fc40.noarch texlive-logreq-11:svn53003-70.fc40.noarch texlive-ltabptch-11:svn17533.1.74d-70.fc40.noarch texlive-ltxcmds-11:svn56421-70.fc40.noarch texlive-ltxmisc-11:svn21927.0-70.fc40.noarch texlive-lua-alt-getopt-11:svn56414-70.fc40.noarch texlive-lua-uni-algos-11:svn62204-70.fc40.noarch texlive-luabidi-11:svn54512-70.fc40.noarch texlive-luahbtex-11:svn66186-79.fc40.s390x texlive-lualatex-math-11:svn61464-70.fc40.noarch texlive-lualibs-11:svn64615-70.fc40.noarch texlive-luaotfload-11:svn64616-79.fc40.noarch texlive-luatex-11:svn66967-79.fc40.s390x texlive-luatexbase-11:svn52663-70.fc40.noarch texlive-lwarp-11:svn66259-79.fc40.noarch texlive-makecmds-11:svn15878.0-70.fc40.noarch texlive-makeindex-11:svn62517-79.fc40.s390x texlive-marginnote-11:svn48383-70.fc40.noarch texlive-marvosym-11:svn29349.2.2a-70.fc40.noarch texlive-mathpazo-11:svn52663-70.fc40.noarch texlive-mathspec-11:svn42773-70.fc40.noarch texlive-mathtools-11:svn63767-70.fc40.noarch texlive-mdwtools-11:svn15878.1.05.4-70.fc40.noarch texlive-memoir-11:svn65040-70.fc40.noarch texlive-metafont-11:svn66186-79.fc40.s390x texlive-metalogo-11:svn18611.0.12-70.fc40.noarch texlive-mflogo-11:svn42428-70.fc40.noarch texlive-mfnfss-11:svn46036-70.fc40.noarch texlive-mfware-11:svn66186-79.fc40.s390x texlive-microtype-11:svn66587-70.fc40.noarch texlive-minitoc-11:svn61719-70.fc40.noarch texlive-mnsymbol-11:svn18651.1.4-70.fc40.noarch texlive-modes-11:svn61719-70.fc40.noarch texlive-mparhack-11:svn59066-70.fc40.noarch texlive-mptopdf-11:svn65952-79.fc40.noarch texlive-ms-11:svn57473-70.fc40.noarch texlive-multido-11:svn18302.1.42-70.fc40.noarch texlive-natbib-11:svn20668.8.31b-70.fc40.noarch texlive-newfloat-11:svn52906-70.fc40.noarch texlive-notoccite-11:svn18129.0-70.fc40.noarch texlive-ntgclass-11:svn65522-70.fc40.noarch texlive-oberdiek-11:svn65521-79.fc40.noarch texlive-pagesel-11:svn56105-70.fc40.noarch texlive-palatino-11:svn61719-70.fc40.noarch texlive-paralist-11:svn43021-70.fc40.noarch texlive-parallel-11:svn15878.0-70.fc40.noarch texlive-parskip-11:svn58358-70.fc40.noarch texlive-pdfcol-11:svn64469-70.fc40.noarch texlive-pdfcolfoot-11:svn65512-70.fc40.noarch texlive-pdfcolmk-11:svn52912-70.fc40.noarch texlive-pdfescape-11:svn53082-70.fc40.noarch texlive-pdflscape-11:svn64851-70.fc40.noarch texlive-pdfmanagement-testphase-11:svn66532-70.fc40.noarch texlive-pdfpages-11:svn65319-70.fc40.noarch texlive-pdftex-11:svn66243-79.fc40.s390x texlive-pdftexcmds-11:svn55777-70.fc40.noarch texlive-pgf-11:svn65553-70.fc40.noarch texlive-picture-11:svn54867-70.fc40.noarch texlive-placeins-11:svn19848.2.2-70.fc40.noarch texlive-plain-11:svn57963-70.fc40.noarch texlive-polyglossia-11:svn65792-70.fc40.noarch texlive-psfrag-11:svn15878.3.04-70.fc40.noarch texlive-pslatex-11:svn57434-70.fc40.noarch texlive-psnfss-11:svn54694-70.fc40.noarch texlive-pspicture-11:svn15878.0-70.fc40.noarch texlive-pst-3d-11:svn17257.1.10-70.fc40.noarch texlive-pst-coil-11:svn62977-70.fc40.noarch texlive-pst-eps-11:svn15878.1.0-70.fc40.noarch texlive-pst-fill-11:svn60671-70.fc40.noarch texlive-pst-grad-11:svn15878.1.06-70.fc40.noarch texlive-pst-math-11:svn64732-70.fc40.noarch texlive-pst-node-11:svn61838-70.fc40.noarch texlive-pst-ovl-11:svn54963-70.fc40.noarch texlive-pst-plot-11:svn65346-70.fc40.noarch texlive-pst-text-11:svn49542-70.fc40.noarch texlive-pst-tools-11:svn60621-70.fc40.noarch texlive-pst-tree-11:svn60421-70.fc40.noarch texlive-pstricks-11:svn65346-70.fc40.noarch texlive-pstricks-add-11:svn65067-70.fc40.noarch texlive-ragged2e-11:svn66152-70.fc40.noarch texlive-rcs-11:svn15878.0-70.fc40.noarch texlive-realscripts-11:svn56594-70.fc40.noarch texlive-refcount-11:svn53164-70.fc40.noarch texlive-rerunfilecheck-11:svn63869-70.fc40.noarch texlive-rsfs-11:svn15878.0-70.fc40.noarch texlive-sansmath-11:svn17997.1.1-70.fc40.noarch texlive-sansmathaccent-11:svn53628-70.fc40.noarch texlive-sauerj-11:svn15878.0-70.fc40.noarch texlive-section-11:svn20180.0-70.fc40.noarch texlive-seminar-11:svn59801-70.fc40.noarch texlive-sepnum-11:svn20186.2.0-70.fc40.noarch texlive-setspace-11:svn65206-70.fc40.noarch texlive-showexpl-11:svn57414-70.fc40.noarch texlive-stringenc-11:svn52982-70.fc40.noarch texlive-subfig-11:svn15878.1.3-70.fc40.noarch texlive-symbol-11:svn61719-70.fc40.noarch texlive-tex-11:svn66186-79.fc40.s390x texlive-tex-ini-files-11:svn40533-70.fc40.noarch texlive-texlive-common-doc-11:svn54176-70.fc40.noarch texlive-texlive-en-11:svn66572-79.fc40.noarch texlive-texlive-msg-translations-11:svn66593-70.fc40.noarch texlive-texlive-scripts-11:svn66584-79.fc40.noarch texlive-texlive.infra-11:svn66512-79.fc40.noarch texlive-textcase-11:svn63868-70.fc40.noarch texlive-thumbpdf-11:svn62518-79.fc40.noarch texlive-times-11:svn61719-70.fc40.noarch texlive-tipa-11:svn29349.1.3-70.fc40.noarch texlive-titlesec-11:svn59845-70.fc40.noarch texlive-tools-11:svn64892-70.fc40.noarch texlive-translator-11:svn59412-70.fc40.noarch texlive-transparent-11:svn64852-70.fc40.noarch texlive-typehtml-11:svn17134.0-70.fc40.noarch texlive-ucharcat-11:svn38907-70.fc40.noarch texlive-ucs-11:svn64114-70.fc40.noarch texlive-underscore-11:svn18261.0-70.fc40.noarch texlive-unicode-data-11:svn64423-70.fc40.noarch texlive-unicode-math-11:svn61719-70.fc40.noarch texlive-uniquecounter-11:svn53162-70.fc40.noarch texlive-url-11:svn32528.3.4-70.fc40.noarch texlive-utopia-11:svn15878.0-70.fc40.noarch texlive-varwidth-11:svn24104.0.92-70.fc40.noarch texlive-xcolor-11:svn63563-70.fc40.noarch texlive-xdvi-11:svn62387-79.fc40.s390x texlive-xetex-11:svn66203-79.fc40.s390x texlive-xetexconfig-11:svn45845-70.fc40.noarch texlive-xifthen-11:svn38929-70.fc40.noarch texlive-xkeyval-11:svn63616-70.fc40.noarch texlive-xltxtra-11:svn56594-70.fc40.noarch texlive-xpatch-11:svn54563-70.fc40.noarch texlive-xstring-11:svn65551-70.fc40.noarch texlive-xunicode-11:svn30466.0.981-70.fc40.noarch texlive-zapfding-11:svn61719-70.fc40.noarch texlive-zref-11:svn62977-70.fc40.noarch tk-1:8.6.13-2.fc40.s390x tk-devel-1:8.6.13-2.fc40.s390x tre-0.8.0-42.20140228gitc2f5d13.fc40.s390x tre-common-0.8.0-42.20140228gitc2f5d13.fc40.noarch tre-devel-0.8.0-42.20140228gitc2f5d13.fc40.s390x ttmkfdir-3.0.9-69.fc39.s390x tzdata-2023d-2.fc40.noarch tzdata-java-2023d-2.fc40.noarch urw-base35-bookman-fonts-20200910-18.fc39.noarch urw-base35-c059-fonts-20200910-18.fc39.noarch urw-base35-d050000l-fonts-20200910-18.fc39.noarch urw-base35-fonts-20200910-18.fc39.noarch urw-base35-fonts-common-20200910-18.fc39.noarch urw-base35-gothic-fonts-20200910-18.fc39.noarch urw-base35-nimbus-mono-ps-fonts-20200910-18.fc39.noarch urw-base35-nimbus-roman-fonts-20200910-18.fc39.noarch urw-base35-nimbus-sans-fonts-20200910-18.fc39.noarch urw-base35-p052-fonts-20200910-18.fc39.noarch urw-base35-standard-symbols-ps-fonts-20200910-18.fc39.noarch urw-base35-z003-fonts-20200910-18.fc39.noarch xdg-utils-1.2.0~git20231511.21fb316-1.fc40.noarch xml-common-0.6.3-62.fc40.noarch xorg-x11-fonts-Type1-7.5-37.fc40.noarch xorg-x11-proto-devel-2023.2-3.fc40.noarch xpdf-libs-1:4.04-10.fc39.s390x xz-devel-5.4.5-1.fc40.s390x zlib-ng-compat-devel-2.1.6-1.fc40.s390x zziplib-0.13.72-5.fc39.s390x Complete! Finish: build setup for R-rtracklayer-1.56.1-6.fc40.src.rpm Start: rpmbuild R-rtracklayer-1.56.1-6.fc40.src.rpm Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1705881600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.qvXCia + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf rtracklayer + /usr/bin/mkdir -p rtracklayer + cd rtracklayer + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/rtracklayer_1.56.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + rm -rf /builddir/build/BUILD/rtracklayer-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/rtracklayer-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + sed -i -e 's|zlibbioc,||' rtracklayer/DESCRIPTION + sed -i -e 's|import(zlibbioc)||' rtracklayer/NAMESPACE + cp /builddir/build/SOURCES/rtracklayer_jimkent_license.txt . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.3BF7Wv + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd rtracklayer + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.vBB9NA + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-rtracklayer-1.56.1-6.fc40.s390x '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-rtracklayer-1.56.1-6.fc40.s390x ++ dirname /builddir/build/BUILDROOT/R-rtracklayer-1.56.1-6.fc40.s390x + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-rtracklayer-1.56.1-6.fc40.s390x + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd rtracklayer + mkdir -p /builddir/build/BUILDROOT/R-rtracklayer-1.56.1-6.fc40.s390x/usr/lib64/R/library + /usr/bin/R CMD INSTALL rtracklayer -l /builddir/build/BUILDROOT/R-rtracklayer-1.56.1-6.fc40.s390x/usr/lib64/R/library * installing *source* package ‘rtracklayer’ ... ** using staged installation checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for OPENSSL... yes configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc (GCC) 14.0.1 20240118 (Red Hat 14.0.1-0)’ gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c IRanges_stubs.c -o IRanges_stubs.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c XVector_stubs.c -o XVector_stubs.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c R_init_rtracklayer.c -o R_init_rtracklayer.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c readGFF.c -o readGFF.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c bbiHelper.c -o bbiHelper.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c bigWig.c -o bigWig.o bigWig.c: In function ‘BWGFile_query’: bigWig.c:268:11: warning: ‘ans_nhits’ may be used uninitialized [-Wmaybe-uninitialized] 268 | INTEGER(ans_nhits)[i] = nqhits; | ^~~~~~~~~~~~~~~~~~ bigWig.c:231:58: note: ‘ans_nhits’ was declared here 231 | SEXP ans, ans_start, ans_width, ans_score, ans_ranges, ans_nhits; | ^~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c bigBedHelper.c -o bigBedHelper.o In file included from /usr/include/string.h:548, from ucsc/common.h:33, from bigBedHelper.h:5, from bigBedHelper.c:1: In function ‘strncpy’, inlined from ‘bbNamedFileChunkKey’ at bigBedHelper.c:148:3: /usr/include/bits/string_fortified.h:95:10: warning: ‘strncpy’ destination unchanged after copying no bytes [-Wstringop-truncation] 95 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c bigBed.c -o bigBed.o bigBed.c: In function ‘BBDFile_write’: bigBed.c:338:10: warning: variable ‘extraIndexListEndOffset’ set but not used [-Wunused-but-set-variable] 338 | bits64 extraIndexListEndOffset = 0; | ^~~~~~~~~~~~~~~~~~~~~~~ bigBed.c: In function ‘BBDFile_query’: bigBed.c:195:7: warning: ‘name’ may be used uninitialized [-Wmaybe-uninitialized] 195 | SET_STRING_ELT(name, i, mkChar(bed->name)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bigBed.c:74:54: note: ‘name’ was declared here 74 | SEXP ans, n_qhits, ranges, chromStart, chromWidth, name, score, | ^~~~ bigBed.c:198:7: warning: ‘score’ may be used uninitialized [-Wmaybe-uninitialized] 198 | INTEGER(score)[i] = bed->score; | ^~~~~~~~~~~~~~ bigBed.c:74:60: note: ‘score’ was declared here 74 | SEXP ans, n_qhits, ranges, chromStart, chromWidth, name, score, | ^~~~~ bigBed.c:205:7: warning: ‘thickStart’ may be used uninitialized [-Wmaybe-uninitialized] 205 | INTEGER(thickStart)[i] = bed->thickStart; | ^~~~~~~~~~~~~~~~~~~ bigBed.c:75:26: note: ‘thickStart’ was declared here 75 | strand = R_NilValue, thickStart, thickWidth, itemRgb, blocks, | ^~~~~~~~~~ bigBed.c:204:7: warning: ‘thickWidth’ may be used uninitialized [-Wmaybe-uninitialized] 204 | INTEGER(thickWidth)[i] = bed->thickEnd - bed->thickStart + 1; | ^~~~~~~~~~~~~~~~~~~ bigBed.c:75:38: note: ‘thickWidth’ was declared here 75 | strand = R_NilValue, thickStart, thickWidth, itemRgb, blocks, | ^~~~~~~~~~ bigBed.c:209:7: warning: ‘itemRgb’ may be used uninitialized [-Wmaybe-uninitialized] 209 | SET_STRING_ELT(itemRgb, i, mkChar(rgbBuf)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bigBed.c:75:50: note: ‘itemRgb’ was declared here 75 | strand = R_NilValue, thickStart, thickWidth, itemRgb, blocks, | ^~~~~~~ bigBed.c:218:7: warning: ‘blocks’ may be used uninitialized [-Wmaybe-uninitialized] 218 | SET_VECTOR_ELT(blocks, i, new_IRanges("IRanges", bstart, bwidth, R_NilValue)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bigBed.c:75:59: note: ‘blocks’ was declared here 75 | strand = R_NilValue, thickStart, thickWidth, itemRgb, blocks, | ^~~~~~ bigBed.c:236:13: warning: ‘lengthIndex’ may be used uninitialized [-Wmaybe-uninitialized] 236 | INTEGER(lengthIndex)[efIndex] = index + 1; | ^~~~~~~~~~~~~~~~~~~~ bigBed.c:76:31: note: ‘lengthIndex’ was declared here 76 | extraFields = R_NilValue, lengthIndex; | ^~~~~~~~~~~ bigBed.c:226:22: warning: ‘typeId’ may be used uninitialized [-Wmaybe-uninitialized] 226 | switch(typeId[efIndex]) { | ^ bigBed.c:141:13: note: ‘typeId’ was declared here 141 | SEXPTYPE *typeId; | ^~~~~~ gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c chain_io.c -o chain_io.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c twoBit.c -o twoBit.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c handlers.c -o handlers.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c utils.c -o utils.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/memgfx.c -o ucsc/memgfx.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/aliType.c -o ucsc/aliType.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/binRange.c -o ucsc/binRange.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/htmlColor.c -o ucsc/htmlColor.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/sqlList.c -o ucsc/sqlList.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/tokenizer.c -o ucsc/tokenizer.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/asParse.c -o ucsc/asParse.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/basicBed.c -o ucsc/basicBed.o ucsc/basicBed.c: In function ‘bedParseRgb’: ucsc/basicBed.c:997:1: warning: ‘strncpy’ specified bound 64 equals destination size [-Wstringop-truncation] 997 | strncpy(dupe, itemRgb, sizeof(dupe)); | ^ gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/bigBed.c -o ucsc/bigBed.o ucsc/bigBed.c: In function ‘extractField’: ucsc/bigBed.c:314:52: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 314 | warn("Not enough fields in extractField of %s", line); | ^~ gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/bPlusTree.c -o ucsc/bPlusTree.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/bbiRead.c -o ucsc/bbiRead.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/bbiWrite.c -o ucsc/bbiWrite.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/bwgCreate.c -o ucsc/bwgCreate.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/bwgQuery.c -o ucsc/bwgQuery.o ucsc/bwgQuery.c: In function ‘bigWigIntervalQuery’: ucsc/bwgQuery.c:187:25: warning: variable ‘blockEnd’ set but not used [-Wunused-but-set-variable] 187 | char *blockPt, *blockEnd; | ^~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/cirTree.c -o ucsc/cirTree.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/common.c -o ucsc/common.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/dnaseq.c -o ucsc/dnaseq.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/dnautil.c -o ucsc/dnautil.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/errAbort.c -o ucsc/errAbort.o ucsc/errAbort.c: In function ‘getThreadVars’: ucsc/errAbort.c:331:5: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 331 | write(STDERR_FILENO, errMsg, strlen(errMsg)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/hash.c -o ucsc/hash.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/linefile.c -o ucsc/linefile.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/localmem.c -o ucsc/localmem.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/sqlNum.c -o ucsc/sqlNum.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/zlibFace.c -o ucsc/zlibFace.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/dystring.c -o ucsc/dystring.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/hmmstats.c -o ucsc/hmmstats.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/obscure.c -o ucsc/obscure.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/pipeline.c -o ucsc/pipeline.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/rangeTree.c -o ucsc/rangeTree.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/rbTree.c -o ucsc/rbTree.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/memalloc.c -o ucsc/memalloc.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/dlist.c -o ucsc/dlist.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/hex.c -o ucsc/hex.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/filePath.c -o ucsc/filePath.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/htmlPage.c -o ucsc/htmlPage.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/udc.c -o ucsc/udc.o In file included from ucsc/udc.c:41: ucsc/net.h:178:1: warning: "/*" within comment [-Wcomment] 178 | /* Use byteRange as a work-around alternate method to get file size (content-length). ucsc/udc.c: In function ‘djb2_hash’: ucsc/udc.c:1088:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 1088 | while (c = *str++) | ^ gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/net.c -o ucsc/net.o In file included from ucsc/net.c:19: ucsc/net.h:178:1: warning: "/*" within comment [-Wcomment] 178 | /* Use byteRange as a work-around alternate method to get file size (content-length). ucsc/net.c: In function ‘netConnectWithTimeout’: ucsc/net.c:148:38: warning: passing argument 3 to ‘restrict’-qualified parameter aliases with argument 4 [-Wrestrict] 148 | res = select(sd+1, NULL, &mySet, &mySet, &tempTime); | ^~~~~~ ~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/bits.c -o ucsc/bits.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/twoBit.c -o ucsc/twoBit.o In file included from ucsc/twoBit.c:15: ucsc/net.h:178:1: warning: "/*" within comment [-Wcomment] 178 | /* Use byteRange as a work-around alternate method to get file size (content-length). gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/_cheapcgi.c -o ucsc/_cheapcgi.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/internet.c -o ucsc/internet.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/https.c -o ucsc/https.o In file included from ucsc/https.c:17: ucsc/net.h:178:1: warning: "/*" within comment [-Wcomment] 178 | /* Use byteRange as a work-around alternate method to get file size (content-length). ucsc/https.c: In function ‘openSslInit’: ucsc/https.c:76:5: warning: ‘ERR_load_SSL_strings’ is deprecated: Since OpenSSL 3.0 [-Wdeprecated-declarations] 76 | ERR_load_SSL_strings(); | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/openssl/sslerr.h:17, from /usr/include/openssl/ssl.h:43, from ucsc/https.c:8: /usr/include/openssl/sslerr_legacy.h:29:27: note: declared here 29 | OSSL_DEPRECATEDIN_3_0 int ERR_load_SSL_strings(void); | ^~~~~~~~~~~~~~~~~~~~ ucsc/https.c: At top level: ucsc/https.c:27:13: warning: ‘openssl_locking_callback’ defined but not used [-Wunused-function] 27 | static void openssl_locking_callback(int mode, int n, const char * file, int line) | ^~~~~~~~~~~~~~~~~~~~~~~~ ucsc/https.c:22:22: warning: ‘openssl_id_callback’ defined but not used [-Wunused-function] 22 | static unsigned long openssl_id_callback(void) | ^~~~~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/base64.c -o ucsc/base64.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/verbose.c -o ucsc/verbose.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/os.c -o ucsc/os.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/wildcmp.c -o ucsc/wildcmp.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c ucsc/_portimpl.c -o ucsc/_portimpl.o gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o rtracklayer.so S4Vectors_stubs.o IRanges_stubs.o XVector_stubs.o R_init_rtracklayer.o readGFF.o bbiHelper.o bigWig.o bigBedHelper.o bigBed.o chain_io.o twoBit.o handlers.o utils.o ucsc/memgfx.o ucsc/aliType.o ucsc/binRange.o ucsc/htmlColor.o ucsc/sqlList.o ucsc/tokenizer.o ucsc/asParse.o ucsc/basicBed.o ucsc/bigBed.o ucsc/bPlusTree.o ucsc/bbiRead.o ucsc/bbiWrite.o ucsc/bwgCreate.o ucsc/bwgQuery.o ucsc/cirTree.o ucsc/common.o ucsc/dnaseq.o ucsc/dnautil.o ucsc/errAbort.o ucsc/hash.o ucsc/linefile.o ucsc/localmem.o ucsc/sqlNum.o ucsc/zlibFace.o ucsc/dystring.o ucsc/hmmstats.o ucsc/obscure.o ucsc/pipeline.o ucsc/rangeTree.o ucsc/rbTree.o ucsc/memalloc.o ucsc/dlist.o ucsc/hex.o ucsc/filePath.o ucsc/htmlPage.o ucsc/udc.o ucsc/net.o ucsc/bits.o ucsc/twoBit.o ucsc/_cheapcgi.o ucsc/internet.o ucsc/https.o ucsc/base64.o ucsc/verbose.o ucsc/os.o ucsc/wildcmp.o ucsc/_portimpl.o -lz -pthread -lssl -lcrypto -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILDROOT/R-rtracklayer-1.56.1-6.fc40.s390x/usr/lib64/R/library/00LOCK-rtracklayer/00new/rtracklayer/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘offset’ from package ‘stats’ in package ‘rtracklayer’ ** help *** installing help indices converting help for package ‘rtracklayer’ finding HTML links ... done BEDFile-class html BamFile-methods html Bed15TrackLine-class html BigBedFile html finding level-2 HTML links ... done BigBedSelection html BigWigFile html BigWigSelection-class html BrowserViewList-class html Chain-class html FastaFile-class html GFFFile-class html GRangesForUCSCGenome html GenomicData html GenomicSelection html IntegerRangesList-methods html Quickload-class html QuickloadGenome-class html TabixFile-methods html TrackDb-class html TrackHub-class html TrackHubGenome-class html TwoBitFile-class html UCSCData-class html UCSCFile-class html UCSCSchema-class html UCSCTableQuery-class html WIGFile-class html activeView-methods html asBED html asGFF html basicTrackLine-class html blocks-methods html browseGenome html browserSession-class html browserSession-methods html browserView-class html browserView-methods html browserViews-methods html cpneTrack html genomeBrowsers html laySequence-methods html layTrack-methods html liftOver html readGFF html targets html tracks-methods html ucscGenomes html ucscSession-class html ucscTrackLine-class html ucscTrackModes-class html ucscTrackModes-methods html ucscView-class html wigToBigWig html wigTrackLine-class html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rtracklayer) + test -d rtracklayer/src + cd rtracklayer/src + rm -f IRanges_stubs.o R_init_rtracklayer.o S4Vectors_stubs.o XVector_stubs.o bbiHelper.o bigBed.o bigBedHelper.o bigWig.o chain_io.o handlers.o readGFF.o twoBit.o utils.o rtracklayer.so + rm -rf /builddir/build/BUILDROOT/R-rtracklayer-1.56.1-6.fc40.s390x/usr/lib64/R/library/R.css + rm -rf /builddir/build/BUILDROOT/R-rtracklayer-1.56.1-6.fc40.s390x/usr/lib64/R/library/rtracklayer/tests/quickload/T_species_Oct_2011/bedGraphData.bw + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.56.1-6.fc40 --unique-debug-suffix -1.56.1-6.fc40.s390x --unique-debug-src-base R-rtracklayer-1.56.1-6.fc40.s390x --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/rtracklayer find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-rtracklayer-1.56.1-6.fc40.s390x 2226 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.s5E7PT + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd rtracklayer + RPM_EC=0 ++ jobs -p + exit 0 Processing files: R-rtracklayer-1.56.1-6.fc40.s390x Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.miBNmB + umask 022 + cd /builddir/build/BUILD + cd rtracklayer + LICENSEDIR=/builddir/build/BUILDROOT/R-rtracklayer-1.56.1-6.fc40.s390x/usr/share/licenses/R-rtracklayer + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/R-rtracklayer-1.56.1-6.fc40.s390x/usr/share/licenses/R-rtracklayer + cp -pr /builddir/build/BUILD/rtracklayer/rtracklayer_jimkent_license.txt /builddir/build/BUILDROOT/R-rtracklayer-1.56.1-6.fc40.s390x/usr/share/licenses/R-rtracklayer + RPM_EC=0 ++ jobs -p + exit 0 Provides: R(rtracklayer) = 1.56.1 R-rtracklayer = 1.56.1-6.fc40 R-rtracklayer(s390-64) = 1.56.1-6.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: R(ABI) = 4.3 R(BiocGenerics) >= 0.35.3 R(BiocIO) R(Biostrings) >= 2.47.6 R(GenomeInfoDb) >= 1.15.2 R(GenomicAlignments) >= 1.15.6 R(GenomicRanges) >= 1.37.2 R(IRanges) >= 2.13.13 R(RCurl) >= 1.4.2 R(Rsamtools) >= 1.31.2 R(S4Vectors) >= 0.23.18 R(XML) >= 1.98.0 R(XVector) >= 0.19.7 R(methods) R(restfulr) >= 0.0.13 R(tools) R-core >= 3.5.0 libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.2)(64bit) libc.so.6(GLIBC_2.28)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libcrypto.so.3()(64bit) libcrypto.so.3(OPENSSL_3.0.0)(64bit) libssl.so.3()(64bit) libssl.so.3(OPENSSL_3.0.0)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Suggests: R(BSgenome) >= 1.33.4 R(RUnit) Processing files: R-rtracklayer-debugsource-1.56.1-6.fc40.s390x Provides: R-rtracklayer-debugsource = 1.56.1-6.fc40 R-rtracklayer-debugsource(s390-64) = 1.56.1-6.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-rtracklayer-debuginfo-1.56.1-6.fc40.s390x Provides: R-rtracklayer-debuginfo = 1.56.1-6.fc40 R-rtracklayer-debuginfo(s390-64) = 1.56.1-6.fc40 debuginfo(build-id) = 8510093282e43abfe4b83f7ccd776659e0d287b1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-rtracklayer-debugsource(s390-64) = 1.56.1-6.fc40 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-rtracklayer-1.56.1-6.fc40.s390x Wrote: /builddir/build/RPMS/R-rtracklayer-debuginfo-1.56.1-6.fc40.s390x.rpm Wrote: /builddir/build/RPMS/R-rtracklayer-debugsource-1.56.1-6.fc40.s390x.rpm Wrote: /builddir/build/RPMS/R-rtracklayer-1.56.1-6.fc40.s390x.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.DReKOg + umask 022 + cd /builddir/build/BUILD + cd rtracklayer + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-rtracklayer-1.56.1-6.fc40.s390x + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.luAbTY + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/rtracklayer-SPECPARTS + rm -rf rtracklayer rtracklayer.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild R-rtracklayer-1.56.1-6.fc40.src.rpm Finish: build phase for R-rtracklayer-1.56.1-6.fc40.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-s390x-1706029470.817520/root/var/log/dnf.rpm.log /var/lib/mock/fedora-39-s390x-1706029470.817520/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-s390x-1706029470.817520/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/R-rtracklayer-1.56.1-6.fc40.src.rpm) Config(child) 3 minutes 1 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-rtracklayer", "epoch": null, "version": "1.56.1", "release": "6.fc40", "arch": "src" }, { "name": "R-rtracklayer-debuginfo", "epoch": null, "version": "1.56.1", "release": "6.fc40", "arch": "s390x" }, { "name": "R-rtracklayer", "epoch": null, "version": "1.56.1", "release": "6.fc40", "arch": "s390x" }, { "name": "R-rtracklayer-debugsource", "epoch": null, "version": "1.56.1", "release": "6.fc40", "arch": "s390x" } ] } RPMResults finished