Warning: Permanently added '169.63.186.254' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7354147-fedora-39-s390x --chroot fedora-39-s390x Version: 0.72 PID: 6476 Logging PID: 6477 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 7354147, 'buildroot_pkgs': [], 'chroot': 'fedora-39-s390x', 'enable_net': False, 'fedora_review': False, 'git_hash': '866b2a2e0edee64ab343c8e71dbef52319db1d02', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-Biostrings', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-Biostrings', 'package_version': '2.64.1-8', 'project_dirname': 'openblas-0.3.23', 'project_name': 'openblas-0.3.23', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-39-s390x/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/iucar', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'https://src.fedoraproject.org/user/iucar', 'tags': [], 'task_id': '7354147-fedora-39-s390x', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-Biostrings /var/lib/copr-rpmbuild/workspace/workdir-yuaosio7/R-Biostrings --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-Biostrings', '/var/lib/copr-rpmbuild/workspace/workdir-yuaosio7/R-Biostrings', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-yuaosio7/R-Biostrings'... Running: git checkout 866b2a2e0edee64ab343c8e71dbef52319db1d02 -- cmd: ['git', 'checkout', '866b2a2e0edee64ab343c8e71dbef52319db1d02', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-yuaosio7/R-Biostrings rc: 0 stdout: stderr: Note: switching to '866b2a2e0edee64ab343c8e71dbef52319db1d02'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 866b2a2 automatic import of R-Biostrings Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-yuaosio7/R-Biostrings rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading Biostrings_2.64.1.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o Biostrings_2.64.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/R-Biostrings/Biostrings_2.64.1.tar.gz/md5/71a78d5b184e315b7d4565f783f35d6e/Biostrings_2.64.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Dload Upload Total Spent Left Speed 100 11.8M 100 11.8M 0 0 2211k 0 0:00:05 0:00:05 --:--:-- 2480k INFO: Reading stdout from command: md5sum Biostrings_2.64.1.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-yuaosio7/R-Biostrings/R-Biostrings.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-yuaosio7/R-Biostrings --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1714136003.493958 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.5 starting (python version = 3.12.1, NVR = mock-5.5-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-yuaosio7/R-Biostrings/R-Biostrings.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-yuaosio7/R-Biostrings --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1714136003.493958 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-yuaosio7/R-Biostrings/R-Biostrings.spec) Config(fedora-39-s390x) Start: clean chroot Finish: clean chroot Mock Version: 5.5 INFO: Mock Version: 5.5 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-s390x-bootstrap-1714136003.493958/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:39 INFO: Pulling image: registry.fedoraproject.org/fedora:39 INFO: Copy content of container registry.fedoraproject.org/fedora:39 to /var/lib/mock/fedora-39-s390x-bootstrap-1714136003.493958/root INFO: Checking that registry.fedoraproject.org/fedora:39 image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:39 with podman image mount INFO: image registry.fedoraproject.org/fedora:39 as /var/lib/containers/storage/overlay/610dffc122254515940e6b389d7b511ac57b241f8e1fef8b1413f556e83e62f8/merged INFO: umounting image registry.fedoraproject.org/fedora:39 (/var/lib/containers/storage/overlay/610dffc122254515940e6b389d7b511ac57b241f8e1fef8b1413f556e83e62f8/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 6.9 MB/s | 16 MB 00:02 Additional repo http_kojipkgs_fedoraproject_org 12 MB/s | 68 MB 00:05 fedora 34 MB/s | 79 MB 00:02 updates 4.5 MB/s | 28 MB 00:06 Last metadata expiration check: 0:00:04 ago on Fri Apr 26 12:54:40 2024. Package python3-dnf-4.19.2-1.fc39.noarch is already installed. Dependencies resolved. ========================================================================================================================= Package Arch Version Repository Size ========================================================================================================================= Installing: python3-dnf-plugins-core noarch 4.6.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 302 k Upgrading: dnf noarch 4.19.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 491 k dnf-data noarch 4.19.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40 k python3-dnf noarch 4.19.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 553 k yum noarch 4.19.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37 k Installing dependencies: dbus-libs s390x 1:1.14.10-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 159 k python3-dateutil noarch 1:2.8.2-13.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 345 k python3-dbus s390x 1.3.2-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 146 k python3-distro noarch 1.9.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 45 k python3-six noarch 1.16.0-14.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k python3-systemd s390x 235-9.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 100 k Transaction Summary ========================================================================================================================= Install 7 Packages Upgrade 4 Packages Total download size: 2.2 M Downloading Packages: (1/11): dbus-libs-1.14.10-3.fc40.s390x.rpm 3.8 MB/s | 159 kB 00:00 (2/11): python3-distro-1.9.0-3.fc40.noarch.rpm 6.5 MB/s | 45 kB 00:00 (3/11): python3-dateutil-2.8.2-13.fc40.noarch.r 6.5 MB/s | 345 kB 00:00 (4/11): python3-dbus-1.3.2-6.fc40.s390x.rpm 2.7 MB/s | 146 kB 00:00 (5/11): python3-six-1.16.0-14.fc40.noarch.rpm 9.8 MB/s | 41 kB 00:00 (6/11): python3-dnf-plugins-core-4.6.0-1.fc41.n 20 MB/s | 302 kB 00:00 (7/11): dnf-4.19.2-1.fc41.noarch.rpm 55 MB/s | 491 kB 00:00 (8/11): python3-systemd-235-9.fc40.s390x.rpm 8.2 MB/s | 100 kB 00:00 (9/11): dnf-data-4.19.2-1.fc41.noarch.rpm 8.0 MB/s | 40 kB 00:00 (10/11): yum-4.19.2-1.fc41.noarch.rpm 6.7 MB/s | 37 kB 00:00 (11/11): python3-dnf-4.19.2-1.fc41.noarch.rpm 20 MB/s | 553 kB 00:00 -------------------------------------------------------------------------------- Total 23 MB/s | 2.2 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Upgrading : dnf-data-4.19.2-1.fc41.noarch 1/15 Upgrading : python3-dnf-4.19.2-1.fc41.noarch 2/15 Upgrading : dnf-4.19.2-1.fc41.noarch 3/15 Running scriptlet: dnf-4.19.2-1.fc41.noarch 3/15 Installing : python3-systemd-235-9.fc40.s390x 4/15 Installing : python3-six-1.16.0-14.fc40.noarch 5/15 Installing : python3-dateutil-1:2.8.2-13.fc40.noarch 6/15 Installing : python3-distro-1.9.0-3.fc40.noarch 7/15 Installing : dbus-libs-1:1.14.10-3.fc40.s390x 8/15 Installing : python3-dbus-1.3.2-6.fc40.s390x 9/15 Installing : python3-dnf-plugins-core-4.6.0-1.fc41.noarch 10/15 Upgrading : yum-4.19.2-1.fc41.noarch 11/15 Cleanup : yum-4.19.2-1.fc39.noarch 12/15 Running scriptlet: dnf-4.19.2-1.fc39.noarch 13/15 Cleanup : dnf-4.19.2-1.fc39.noarch 13/15 Running scriptlet: dnf-4.19.2-1.fc39.noarch 13/15 Cleanup : python3-dnf-4.19.2-1.fc39.noarch 14/15 Cleanup : dnf-data-4.19.2-1.fc39.noarch 15/15 Running scriptlet: dnf-data-4.19.2-1.fc39.noarch 15/15 Verifying : dbus-libs-1:1.14.10-3.fc40.s390x 1/15 Verifying : python3-dateutil-1:2.8.2-13.fc40.noarch 2/15 Verifying : python3-dbus-1.3.2-6.fc40.s390x 3/15 Verifying : python3-distro-1.9.0-3.fc40.noarch 4/15 Verifying : python3-dnf-plugins-core-4.6.0-1.fc41.noarch 5/15 Verifying : python3-six-1.16.0-14.fc40.noarch 6/15 Verifying : python3-systemd-235-9.fc40.s390x 7/15 Verifying : dnf-4.19.2-1.fc41.noarch 8/15 Verifying : dnf-4.19.2-1.fc39.noarch 9/15 Verifying : dnf-data-4.19.2-1.fc41.noarch 10/15 Verifying : dnf-data-4.19.2-1.fc39.noarch 11/15 Verifying : python3-dnf-4.19.2-1.fc41.noarch 12/15 Verifying : python3-dnf-4.19.2-1.fc39.noarch 13/15 Verifying : yum-4.19.2-1.fc41.noarch 14/15 Verifying : yum-4.19.2-1.fc39.noarch 15/15 Upgraded: dnf-4.19.2-1.fc41.noarch dnf-data-4.19.2-1.fc41.noarch python3-dnf-4.19.2-1.fc41.noarch yum-4.19.2-1.fc41.noarch Installed: dbus-libs-1:1.14.10-3.fc40.s390x python3-dateutil-1:2.8.2-13.fc40.noarch python3-dbus-1.3.2-6.fc40.s390x python3-distro-1.9.0-3.fc40.noarch python3-dnf-plugins-core-4.6.0-1.fc41.noarch python3-six-1.16.0-14.fc40.noarch python3-systemd-235-9.fc40.s390x Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-s390x-1714136003.493958/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1.1-1.fc39.s390x rpm-sequoia-1.6.0-1.fc39.s390x python3-dnf-4.19.2-1.fc41.noarch python3-dnf-plugins-core-4.6.0-1.fc41.noarch yum-4.19.2-1.fc41.noarch Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 3.0 MB/s | 16 MB 00:05 Additional repo http_kojipkgs_fedoraproject_org 155 MB/s | 68 MB 00:00 fedora 56 MB/s | 79 MB 00:01 updates 8.0 MB/s | 28 MB 00:03 Last metadata expiration check: 0:00:08 ago on Fri Apr 26 12:56:00 2024. Dependencies resolved. ======================================================================================================================================== Package Arch Version Repository Size ======================================================================================================================================== Installing group/module packages: bash s390x 5.2.26-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 M bzip2 s390x 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 53 k coreutils s390x 9.5-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M cpio s390x 2.15-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 291 k diffutils s390x 3.10-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 412 k fedora-release-common noarch 41-0.9 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 22 k findutils s390x 1:4.9.0-8.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 493 k gawk s390x 5.3.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M glibc-minimal-langpack s390x 2.39.9000-16.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 110 k grep s390x 3.11-7.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 297 k gzip s390x 1.13-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 171 k info s390x 7.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 195 k patch s390x 2.7.6-24.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 141 k redhat-rpm-config noarch 288-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 75 k rpm-build s390x 4.19.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 71 k sed s390x 4.9-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 312 k shadow-utils s390x 2:4.15.1-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 M tar s390x 2:1.35-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 871 k unzip s390x 6.0-63.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 195 k util-linux s390x 2.40-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M which s390x 2.21-41.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 43 k xz s390x 1:5.4.6-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 533 k Installing dependencies: alternatives s390x 1.26-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k ansible-srpm-macros noarch 1-15.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21 k audit-libs s390x 4.0.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 129 k authselect s390x 1.5.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 141 k authselect-libs s390x 1.5.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 204 k basesystem noarch 11-20.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.2 k binutils s390x 2.42.50-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.0 M binutils-gold s390x 2.42.50-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 998 k bzip2-libs s390x 1.0.8-18.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 47 k ca-certificates noarch 2023.2.62_v7.0.401-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 862 k coreutils-common s390x 9.5-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 M cracklib s390x 2.9.11-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 84 k crypto-policies noarch 20240320-1.git58e3d95.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 65 k curl s390x 8.7.1-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 309 k cyrus-sasl-lib s390x 2.1.28-19.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 821 k debugedit s390x 5.0-14.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 82 k dwz s390x 0.15-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 145 k ed s390x 1.20.2-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 83 k efi-srpm-macros noarch 5-11.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 22 k elfutils s390x 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 582 k elfutils-debuginfod-client s390x 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39 k elfutils-default-yama-scope noarch 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13 k elfutils-libelf s390x 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 214 k elfutils-libs s390x 0.191-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 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util-linux-core s390x 2.40-13.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 526 k xxhash-libs s390x 0.8.2-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 36 k xz-libs s390x 1:5.4.6-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 116 k zig-srpm-macros noarch 1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.0 k zip s390x 3.0-40.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 283 k zlib-ng-compat s390x 2.1.6-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 66 k zstd s390x 1.5.6-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 516 k Installing Groups: Buildsystem building group Transaction Summary ======================================================================================================================================== Install 153 Packages Total download size: 53 M Installed size: 182 M Downloading Packages: (1/153): 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(16/153): crypto-policies-20240320-1.git58e3d95 3.7 MB/s | 65 kB 00:00 (17/153): binutils-2.42.50-6.fc41.s390x.rpm 41 MB/s | 6.0 MB 00:00 (18/153): curl-8.7.1-1.fc41.s390x.rpm 24 MB/s | 309 kB 00:00 (19/153): cyrus-sasl-lib-2.1.28-19.fc40.s390x.r 36 MB/s | 821 kB 00:00 (20/153): debugedit-5.0-14.fc40.s390x.rpm 3.4 MB/s | 82 kB 00:00 (21/153): dwz-0.15-6.fc40.s390x.rpm 16 MB/s | 145 kB 00:00 (22/153): diffutils-3.10-5.fc40.s390x.rpm 27 MB/s | 412 kB 00:00 (23/153): efi-srpm-macros-5-11.fc40.noarch.rpm 2.8 MB/s | 22 kB 00:00 (24/153): ed-1.20.2-1.fc41.s390x.rpm 6.4 MB/s | 83 kB 00:00 (25/153): elfutils-debuginfod-client-0.191-7.fc 7.3 MB/s | 39 kB 00:00 (26/153): elfutils-0.191-7.fc41.s390x.rpm 39 MB/s | 582 kB 00:00 (27/153): elfutils-default-yama-scope-0.191-7.f 1.2 MB/s | 13 kB 00:00 (28/153): elfutils-libs-0.191-7.fc41.s390x.rpm 29 MB/s | 282 kB 00:00 (29/153): elfutils-libelf-0.191-7.fc41.s390x.rp 15 MB/s | 214 kB 00:00 (30/153): fedora-release-41-0.9.noarch.rpm 2.4 MB/s | 11 kB 00:00 (31/153): fedora-gpg-keys-41-0.1.noarch.rpm 14 MB/s | 121 kB 00:00 (32/153): fedora-release-identity-basic-41-0.9. 2.4 MB/s | 12 kB 00:00 (33/153): fedora-release-common-41-0.9.noarch.r 2.3 MB/s | 22 kB 00:00 (34/153): fedora-repos-rawhide-41-0.1.noarch.rp 1.2 MB/s | 8.9 kB 00:00 (35/153): file-5.45-5.fc41.s390x.rpm 6.3 MB/s | 49 kB 00:00 (36/153): fedora-repos-41-0.1.noarch.rpm 555 kB/s | 9.3 kB 00:00 (37/153): file-libs-5.45-5.fc41.s390x.rpm 51 MB/s | 770 kB 00:00 (38/153): filesystem-3.18-9.fc41.s390x.rpm 43 MB/s | 1.1 MB 00:00 (39/153): findutils-4.9.0-8.fc40.s390x.rpm 38 MB/s | 493 kB 00:00 (40/153): forge-srpm-macros-0.3.1-1.fc41.noarch 5.1 MB/s | 19 kB 00:00 (41/153): fpc-srpm-macros-1.3-12.fc40.noarch.rp 822 kB/s | 7.8 kB 00:00 (42/153): fonts-srpm-macros-2.0.5-14.fc40.noarc 1.5 MB/s | 27 kB 00:00 (43/153): gdbm-1.23-6.fc40.s390x.rpm 10 MB/s | 152 kB 00:00 (44/153): gdbm-libs-1.23-6.fc40.s390x.rpm 7.0 MB/s | 58 kB 00:00 (45/153): gawk-5.3.0-3.fc40.s390x.rpm 38 MB/s | 1.1 MB 00:00 (46/153): ghc-srpm-macros-1.9.1-1.fc41.noarch.r 1.2 MB/s | 9.0 kB 00:00 (47/153): glibc-common-2.39.9000-16.fc41.s390x. 19 MB/s | 408 kB 00:00 (48/153): glibc-2.39.9000-16.fc41.s390x.rpm 58 MB/s | 1.9 MB 00:00 (49/153): glibc-minimal-langpack-2.39.9000-16.f 9.6 MB/s | 110 kB 00:00 (50/153): gmp-6.3.0-1.fc41.s390x.rpm 24 MB/s | 329 kB 00:00 (51/153): gnat-srpm-macros-6-5.fc40.noarch.rpm 1.2 MB/s | 8.8 kB 00:00 (52/153): glibc-gconv-extra-2.39.9000-16.fc41.s 34 MB/s | 1.7 MB 00:00 (53/153): go-srpm-macros-3.6.0-1.fc41.noarch.rp 3.4 MB/s | 28 kB 00:00 (54/153): gzip-1.13-1.fc40.s390x.rpm 17 MB/s | 171 kB 00:00 (55/153): grep-3.11-7.fc40.s390x.rpm 20 MB/s | 297 kB 00:00 (56/153): info-7.1-2.fc40.s390x.rpm 14 MB/s | 195 kB 00:00 (57/153): jansson-2.13.1-9.fc40.s390x.rpm 3.6 MB/s | 45 kB 00:00 (58/153): kernel-srpm-macros-1.0-23.fc41.noarch 1.5 MB/s | 9.8 kB 00:00 (59/153): keyutils-libs-1.6.3-3.fc40.s390x.rpm 2.3 MB/s | 31 kB 00:00 (60/153): libacl-2.3.2-1.fc40.s390x.rpm 4.1 MB/s | 25 kB 00:00 (61/153): krb5-libs-1.21.2-5.fc40.s390x.rpm 37 MB/s | 781 kB 00:00 (62/153): libarchive-3.7.2-3.fc41.s390x.rpm 38 MB/s | 440 kB 00:00 (63/153): libattr-2.5.2-3.fc40.s390x.rpm 1.9 MB/s | 18 kB 00:00 (64/153): libblkid-2.40-13.fc41.s390x.rpm 11 MB/s | 130 kB 00:00 (65/153): libcap-2.69-8.fc41.s390x.rpm 8.2 MB/s | 88 kB 00:00 (66/153): libbrotli-1.1.0-3.fc40.s390x.rpm 17 MB/s | 387 kB 00:00 (67/153): libcap-ng-0.8.5-1.fc41.s390x.rpm 3.8 MB/s | 33 kB 00:00 (68/153): libcom_err-1.47.0-5.fc40.s390x.rpm 1.0 MB/s | 25 kB 00:00 (69/153): libcurl-8.7.1-1.fc41.s390x.rpm 16 MB/s | 371 kB 00:00 (70/153): libeconf-0.6.2-1.fc41.s390x.rpm 2.2 MB/s | 34 kB 00:00 (71/153): libevent-2.1.12-12.fc40.s390x.rpm 15 MB/s | 260 kB 00:00 (72/153): libfdisk-2.40-13.fc41.s390x.rpm 26 MB/s | 165 kB 00:00 (73/153): libgcc-14.0.1-0.15.fc41.s390x.rpm 14 MB/s | 83 kB 00:00 (74/153): libffi-3.4.6-1.fc41.s390x.rpm 4.2 MB/s | 36 kB 00:00 (75/153): libgomp-14.0.1-0.15.fc41.s390x.rpm 27 MB/s | 349 kB 00:00 (76/153): libidn2-2.3.7-1.fc40.s390x.rpm 6.3 MB/s | 113 kB 00:00 (77/153): libmount-2.40-13.fc41.s390x.rpm 14 MB/s | 159 kB 00:00 (78/153): libnsl2-2.0.1-1.fc40.s390x.rpm 4.6 MB/s | 29 kB 00:00 (79/153): libpkgconf-2.1.0-1.fc40.s390x.rpm 4.3 MB/s | 39 kB 00:00 (80/153): libnghttp2-1.61.0-1.fc41.s390x.rpm 3.6 MB/s | 80 kB 00:00 (81/153): libpsl-0.21.5-3.fc40.s390x.rpm 7.9 MB/s | 64 kB 00:00 (82/153): libpwquality-1.4.5-9.fc40.s390x.rpm 6.8 MB/s | 109 kB 00:00 (83/153): libsemanage-3.6-3.fc40.s390x.rpm 9.8 MB/s | 120 kB 00:00 (84/153): libselinux-3.6-4.fc40.s390x.rpm 3.6 MB/s | 92 kB 00:00 (85/153): libsepol-3.6-3.fc40.s390x.rpm 15 MB/s | 349 kB 00:00 (86/153): libsmartcols-2.40-13.fc41.s390x.rpm 2.7 MB/s | 86 kB 00:00 (87/153): libssh-0.10.6-6.fc41.s390x.rpm 13 MB/s | 211 kB 00:00 (88/153): libssh-config-0.10.6-6.fc41.noarch.rp 1.0 MB/s | 9.1 kB 00:00 (89/153): libtasn1-4.19.0-6.fc40.s390x.rpm 9.5 MB/s | 78 kB 00:00 (90/153): libtirpc-1.3.4-1.rc3.fc41.s390x.rpm 7.4 MB/s | 95 kB 00:00 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3.3 MB/s | 13 kB 00:00 (135/153): sed-4.9-1.fc40.s390x.rpm 27 MB/s | 312 kB 00:00 (136/153): setup-2.14.5-2.fc40.noarch.rpm 20 MB/s | 148 kB 00:00 (137/153): rpm-sequoia-1.6.0-2.fc40.s390x.rpm 36 MB/s | 981 kB 00:00 (138/153): shadow-utils-4.15.1-2.fc41.s390x.rpm 60 MB/s | 1.3 MB 00:00 (139/153): sqlite-libs-3.45.2-1.fc41.s390x.rpm 35 MB/s | 762 kB 00:00 (140/153): systemd-libs-255.5-1.fc41.s390x.rpm 34 MB/s | 720 kB 00:00 (141/153): tar-1.35-3.fc40.s390x.rpm 33 MB/s | 871 kB 00:00 (142/153): unzip-6.0-63.fc40.s390x.rpm 21 MB/s | 195 kB 00:00 (143/153): gdb-minimal-14.2-5.fc41.s390x.rpm 3.4 MB/s | 4.3 MB 00:01 (144/153): util-linux-core-2.40-13.fc41.s390x.r 32 MB/s | 526 kB 00:00 (145/153): util-linux-2.40-13.fc41.s390x.rpm 52 MB/s | 1.1 MB 00:00 (146/153): xxhash-libs-0.8.2-2.fc40.s390x.rpm 4.3 MB/s | 36 kB 00:00 (147/153): xz-5.4.6-3.fc41.s390x.rpm 35 MB/s | 533 kB 00:00 (148/153): xz-libs-5.4.6-3.fc41.s390x.rpm 12 MB/s | 116 kB 00:00 (149/153): which-2.21-41.fc40.s390x.rpm 1.8 MB/s | 43 kB 00:00 (150/153): zig-srpm-macros-1-2.fc40.noarch.rpm 1.3 MB/s | 8.0 kB 00:00 (151/153): zlib-ng-compat-2.1.6-2.fc40.s390x.rp 9.1 MB/s | 66 kB 00:00 (152/153): zip-3.0-40.fc40.s390x.rpm 25 MB/s | 283 kB 00:00 (153/153): zstd-1.5.6-1.fc41.s390x.rpm 35 MB/s | 516 kB 00:00 -------------------------------------------------------------------------------- Total 40 MB/s | 53 MB 00:01 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-9.fc41.s390x 1/1 Preparing : 1/1 Installing : libgcc-14.0.1-0.15.fc41.s390x 1/153 Running scriptlet: libgcc-14.0.1-0.15.fc41.s390x 1/153 Installing : crypto-policies-20240320-1.git58e3d95.fc41.noarc 2/153 Running scriptlet: crypto-policies-20240320-1.git58e3d95.fc41.noarc 2/153 Installing : fedora-release-identity-basic-41-0.9.noarch 3/153 Installing : fedora-repos-rawhide-41-0.1.noarch 4/153 Installing : fedora-gpg-keys-41-0.1.noarch 5/153 Installing : fedora-repos-41-0.1.noarch 6/153 Installing : fedora-release-common-41-0.9.noarch 7/153 Installing : fedora-release-41-0.9.noarch 8/153 Installing : setup-2.14.5-2.fc40.noarch 9/153 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.5-2.fc40.noarch 9/153 Installing : filesystem-3.18-9.fc41.s390x 10/153 Installing : basesystem-11-20.fc40.noarch 11/153 Installing : rust-srpm-macros-26.2-1.fc41.noarch 12/153 Installing : qt6-srpm-macros-6.7.0-1.fc41.noarch 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rpm-libs-4.19.1.1-1.fc40.s390x 137/153 Running scriptlet: rpm-4.19.1.1-1.fc40.s390x 138/153 Installing : rpm-4.19.1.1-1.fc40.s390x 138/153 Installing : efi-srpm-macros-5-11.fc40.noarch 139/153 Installing : lua-srpm-macros-1-13.fc40.noarch 140/153 Installing : zig-srpm-macros-1-2.fc40.noarch 141/153 Installing : rpm-build-libs-4.19.1.1-1.fc40.s390x 142/153 Installing : ansible-srpm-macros-1-15.fc41.noarch 143/153 Installing : fonts-srpm-macros-1:2.0.5-14.fc40.noarch 144/153 Installing : forge-srpm-macros-0.3.1-1.fc41.noarch 145/153 Installing : go-srpm-macros-3.6.0-1.fc41.noarch 146/153 Installing : python-srpm-macros-3.12-9.fc41.noarch 147/153 Installing : redhat-rpm-config-288-1.fc41.noarch 148/153 Installing : rpm-build-4.19.1.1-1.fc40.s390x 149/153 Installing : pyproject-srpm-macros-1.12.0-1.fc40.noarch 150/153 Installing : util-linux-2.40-13.fc41.s390x 151/153 Running scriptlet: util-linux-2.40-13.fc41.s390x 151/153 Installing : which-2.21-41.fc40.s390x 152/153 Installing : info-7.1-2.fc40.s390x 153/153 Running scriptlet: filesystem-3.18-9.fc41.s390x 153/153 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch 153/153 Running scriptlet: authselect-libs-1.5.0-5.fc41.s390x 153/153 Running scriptlet: rpm-4.19.1.1-1.fc40.s390x 153/153 Running scriptlet: info-7.1-2.fc40.s390x 153/153 Installed: alternatives-1.26-3.fc40.s390x ansible-srpm-macros-1-15.fc41.noarch audit-libs-4.0.1-1.fc41.s390x authselect-1.5.0-5.fc41.s390x authselect-libs-1.5.0-5.fc41.s390x basesystem-11-20.fc40.noarch bash-5.2.26-3.fc40.s390x binutils-2.42.50-6.fc41.s390x binutils-gold-2.42.50-6.fc41.s390x bzip2-1.0.8-18.fc40.s390x bzip2-libs-1.0.8-18.fc40.s390x ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch coreutils-9.5-1.fc41.s390x coreutils-common-9.5-1.fc41.s390x cpio-2.15-1.fc40.s390x cracklib-2.9.11-5.fc40.s390x crypto-policies-20240320-1.git58e3d95.fc41.noarch curl-8.7.1-1.fc41.s390x cyrus-sasl-lib-2.1.28-19.fc40.s390x debugedit-5.0-14.fc40.s390x diffutils-3.10-5.fc40.s390x dwz-0.15-6.fc40.s390x ed-1.20.2-1.fc41.s390x efi-srpm-macros-5-11.fc40.noarch elfutils-0.191-7.fc41.s390x elfutils-debuginfod-client-0.191-7.fc41.s390x elfutils-default-yama-scope-0.191-7.fc41.noarch elfutils-libelf-0.191-7.fc41.s390x elfutils-libs-0.191-7.fc41.s390x fedora-gpg-keys-41-0.1.noarch fedora-release-41-0.9.noarch fedora-release-common-41-0.9.noarch fedora-release-identity-basic-41-0.9.noarch fedora-repos-41-0.1.noarch fedora-repos-rawhide-41-0.1.noarch file-5.45-5.fc41.s390x file-libs-5.45-5.fc41.s390x filesystem-3.18-9.fc41.s390x findutils-1:4.9.0-8.fc40.s390x fonts-srpm-macros-1:2.0.5-14.fc40.noarch forge-srpm-macros-0.3.1-1.fc41.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.s390x gdb-minimal-14.2-5.fc41.s390x gdbm-1:1.23-6.fc40.s390x gdbm-libs-1:1.23-6.fc40.s390x ghc-srpm-macros-1.9.1-1.fc41.noarch glibc-2.39.9000-16.fc41.s390x glibc-common-2.39.9000-16.fc41.s390x glibc-gconv-extra-2.39.9000-16.fc41.s390x glibc-minimal-langpack-2.39.9000-16.fc41.s390x gmp-1:6.3.0-1.fc41.s390x gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.6.0-1.fc41.noarch grep-3.11-7.fc40.s390x gzip-1.13-1.fc40.s390x info-7.1-2.fc40.s390x jansson-2.13.1-9.fc40.s390x kernel-srpm-macros-1.0-23.fc41.noarch keyutils-libs-1.6.3-3.fc40.s390x krb5-libs-1.21.2-5.fc40.s390x libacl-2.3.2-1.fc40.s390x libarchive-3.7.2-3.fc41.s390x libattr-2.5.2-3.fc40.s390x libblkid-2.40-13.fc41.s390x libbrotli-1.1.0-3.fc40.s390x libcap-2.69-8.fc41.s390x libcap-ng-0.8.5-1.fc41.s390x libcom_err-1.47.0-5.fc40.s390x libcurl-8.7.1-1.fc41.s390x libeconf-0.6.2-1.fc41.s390x libevent-2.1.12-12.fc40.s390x libfdisk-2.40-13.fc41.s390x libffi-3.4.6-1.fc41.s390x libgcc-14.0.1-0.15.fc41.s390x libgomp-14.0.1-0.15.fc41.s390x libidn2-2.3.7-1.fc40.s390x libmount-2.40-13.fc41.s390x libnghttp2-1.61.0-1.fc41.s390x libnsl2-2.0.1-1.fc40.s390x libpkgconf-2.1.0-1.fc40.s390x libpsl-0.21.5-3.fc40.s390x libpwquality-1.4.5-9.fc40.s390x libselinux-3.6-4.fc40.s390x libsemanage-3.6-3.fc40.s390x libsepol-3.6-3.fc40.s390x libsmartcols-2.40-13.fc41.s390x libssh-0.10.6-6.fc41.s390x libssh-config-0.10.6-6.fc41.noarch libstdc++-14.0.1-0.15.fc41.s390x libtasn1-4.19.0-6.fc40.s390x libtirpc-1.3.4-1.rc3.fc41.s390x libtool-ltdl-2.4.7-10.fc40.s390x libunistring-1.1-7.fc41.s390x libutempter-1.2.1-13.fc40.s390x libuuid-2.40-13.fc41.s390x libverto-0.3.2-8.fc40.s390x libxcrypt-4.4.36-5.fc40.s390x libxml2-2.12.6-1.fc41.s390x libzstd-1.5.6-1.fc41.s390x lua-libs-5.4.6-5.fc40.s390x lua-srpm-macros-1-13.fc40.noarch lz4-libs-1.9.4-6.fc40.s390x mpfr-4.2.1-3.fc40.s390x ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.s390x ocaml-srpm-macros-9-3.fc40.noarch openblas-srpm-macros-2-17.fc41.noarch openldap-2.6.7-1.fc40.s390x openssl-libs-1:3.2.1-6.fc41.s390x p11-kit-0.25.3-4.fc40.s390x p11-kit-trust-0.25.3-4.fc40.s390x package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.1-1.fc41.s390x pam-libs-1.6.1-1.fc41.s390x patch-2.7.6-24.fc40.s390x pcre2-10.43-1.fc41.s390x pcre2-syntax-10.43-1.fc41.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-2.1.0-1.fc40.s390x pkgconf-m4-2.1.0-1.fc40.noarch pkgconf-pkg-config-2.1.0-1.fc40.s390x popt-1.19-6.fc40.s390x publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.12.0-1.fc40.noarch python-srpm-macros-3.12-9.fc41.noarch qt5-srpm-macros-5.15.13-1.fc41.noarch qt6-srpm-macros-6.7.0-1.fc41.noarch readline-8.2-8.fc40.s390x redhat-rpm-config-288-1.fc41.noarch rpm-4.19.1.1-1.fc40.s390x rpm-build-4.19.1.1-1.fc40.s390x rpm-build-libs-4.19.1.1-1.fc40.s390x rpm-libs-4.19.1.1-1.fc40.s390x rpm-sequoia-1.6.0-2.fc40.s390x rust-srpm-macros-26.2-1.fc41.noarch sed-4.9-1.fc40.s390x setup-2.14.5-2.fc40.noarch shadow-utils-2:4.15.1-2.fc41.s390x sqlite-libs-3.45.2-1.fc41.s390x systemd-libs-255.5-1.fc41.s390x tar-2:1.35-3.fc40.s390x unzip-6.0-63.fc40.s390x util-linux-2.40-13.fc41.s390x util-linux-core-2.40-13.fc41.s390x which-2.21-41.fc40.s390x xxhash-libs-0.8.2-2.fc40.s390x xz-1:5.4.6-3.fc41.s390x xz-libs-1:5.4.6-3.fc41.s390x zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.s390x zlib-ng-compat-2.1.6-2.fc40.s390x zstd-1.5.6-1.fc41.s390x Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.26-3.fc40.s390x ansible-srpm-macros-1-15.fc41.noarch audit-libs-4.0.1-1.fc41.s390x authselect-1.5.0-5.fc41.s390x authselect-libs-1.5.0-5.fc41.s390x basesystem-11-20.fc40.noarch bash-5.2.26-3.fc40.s390x binutils-2.42.50-6.fc41.s390x binutils-gold-2.42.50-6.fc41.s390x bzip2-1.0.8-18.fc40.s390x bzip2-libs-1.0.8-18.fc40.s390x ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch coreutils-9.5-1.fc41.s390x coreutils-common-9.5-1.fc41.s390x cpio-2.15-1.fc40.s390x cracklib-2.9.11-5.fc40.s390x crypto-policies-20240320-1.git58e3d95.fc41.noarch curl-8.7.1-1.fc41.s390x cyrus-sasl-lib-2.1.28-19.fc40.s390x debugedit-5.0-14.fc40.s390x diffutils-3.10-5.fc40.s390x dwz-0.15-6.fc40.s390x ed-1.20.2-1.fc41.s390x efi-srpm-macros-5-11.fc40.noarch elfutils-0.191-7.fc41.s390x elfutils-debuginfod-client-0.191-7.fc41.s390x elfutils-default-yama-scope-0.191-7.fc41.noarch elfutils-libelf-0.191-7.fc41.s390x elfutils-libs-0.191-7.fc41.s390x fedora-gpg-keys-41-0.1.noarch fedora-release-41-0.9.noarch fedora-release-common-41-0.9.noarch fedora-release-identity-basic-41-0.9.noarch fedora-repos-41-0.1.noarch fedora-repos-rawhide-41-0.1.noarch file-5.45-5.fc41.s390x file-libs-5.45-5.fc41.s390x filesystem-3.18-9.fc41.s390x findutils-4.9.0-8.fc40.s390x fonts-srpm-macros-2.0.5-14.fc40.noarch forge-srpm-macros-0.3.1-1.fc41.noarch fpc-srpm-macros-1.3-12.fc40.noarch gawk-5.3.0-3.fc40.s390x gdb-minimal-14.2-5.fc41.s390x gdbm-1.23-6.fc40.s390x gdbm-libs-1.23-6.fc40.s390x ghc-srpm-macros-1.9.1-1.fc41.noarch glibc-2.39.9000-16.fc41.s390x glibc-common-2.39.9000-16.fc41.s390x glibc-gconv-extra-2.39.9000-16.fc41.s390x glibc-minimal-langpack-2.39.9000-16.fc41.s390x gmp-6.3.0-1.fc41.s390x gnat-srpm-macros-6-5.fc40.noarch go-srpm-macros-3.6.0-1.fc41.noarch grep-3.11-7.fc40.s390x gzip-1.13-1.fc40.s390x info-7.1-2.fc40.s390x jansson-2.13.1-9.fc40.s390x kernel-srpm-macros-1.0-23.fc41.noarch keyutils-libs-1.6.3-3.fc40.s390x krb5-libs-1.21.2-5.fc40.s390x libacl-2.3.2-1.fc40.s390x libarchive-3.7.2-3.fc41.s390x libattr-2.5.2-3.fc40.s390x libblkid-2.40-13.fc41.s390x libbrotli-1.1.0-3.fc40.s390x libcap-2.69-8.fc41.s390x libcap-ng-0.8.5-1.fc41.s390x libcom_err-1.47.0-5.fc40.s390x libcurl-8.7.1-1.fc41.s390x libeconf-0.6.2-1.fc41.s390x libevent-2.1.12-12.fc40.s390x libfdisk-2.40-13.fc41.s390x libffi-3.4.6-1.fc41.s390x libgcc-14.0.1-0.15.fc41.s390x libgomp-14.0.1-0.15.fc41.s390x libidn2-2.3.7-1.fc40.s390x libmount-2.40-13.fc41.s390x libnghttp2-1.61.0-1.fc41.s390x libnsl2-2.0.1-1.fc40.s390x libpkgconf-2.1.0-1.fc40.s390x libpsl-0.21.5-3.fc40.s390x libpwquality-1.4.5-9.fc40.s390x libselinux-3.6-4.fc40.s390x libsemanage-3.6-3.fc40.s390x libsepol-3.6-3.fc40.s390x libsmartcols-2.40-13.fc41.s390x libssh-0.10.6-6.fc41.s390x libssh-config-0.10.6-6.fc41.noarch libstdc++-14.0.1-0.15.fc41.s390x libtasn1-4.19.0-6.fc40.s390x libtirpc-1.3.4-1.rc3.fc41.s390x libtool-ltdl-2.4.7-10.fc40.s390x libunistring-1.1-7.fc41.s390x libutempter-1.2.1-13.fc40.s390x libuuid-2.40-13.fc41.s390x libverto-0.3.2-8.fc40.s390x libxcrypt-4.4.36-5.fc40.s390x libxml2-2.12.6-1.fc41.s390x libzstd-1.5.6-1.fc41.s390x lua-libs-5.4.6-5.fc40.s390x lua-srpm-macros-1-13.fc40.noarch lz4-libs-1.9.4-6.fc40.s390x mpfr-4.2.1-3.fc40.s390x ncurses-base-6.4-12.20240127.fc40.noarch ncurses-libs-6.4-12.20240127.fc40.s390x ocaml-srpm-macros-9-3.fc40.noarch openblas-srpm-macros-2-17.fc41.noarch openldap-2.6.7-1.fc40.s390x openssl-libs-3.2.1-6.fc41.s390x p11-kit-0.25.3-4.fc40.s390x p11-kit-trust-0.25.3-4.fc40.s390x package-notes-srpm-macros-0.5-11.fc40.noarch pam-1.6.1-1.fc41.s390x pam-libs-1.6.1-1.fc41.s390x patch-2.7.6-24.fc40.s390x pcre2-10.43-1.fc41.s390x pcre2-syntax-10.43-1.fc41.noarch perl-srpm-macros-1-53.fc40.noarch pkgconf-2.1.0-1.fc40.s390x pkgconf-m4-2.1.0-1.fc40.noarch pkgconf-pkg-config-2.1.0-1.fc40.s390x popt-1.19-6.fc40.s390x publicsuffix-list-dafsa-20240107-3.fc40.noarch pyproject-srpm-macros-1.12.0-1.fc40.noarch python-srpm-macros-3.12-9.fc41.noarch qt5-srpm-macros-5.15.13-1.fc41.noarch qt6-srpm-macros-6.7.0-1.fc41.noarch readline-8.2-8.fc40.s390x redhat-rpm-config-288-1.fc41.noarch rpm-4.19.1.1-1.fc40.s390x rpm-build-4.19.1.1-1.fc40.s390x rpm-build-libs-4.19.1.1-1.fc40.s390x rpm-libs-4.19.1.1-1.fc40.s390x rpm-sequoia-1.6.0-2.fc40.s390x rust-srpm-macros-26.2-1.fc41.noarch sed-4.9-1.fc40.s390x setup-2.14.5-2.fc40.noarch shadow-utils-4.15.1-2.fc41.s390x sqlite-libs-3.45.2-1.fc41.s390x systemd-libs-255.5-1.fc41.s390x tar-1.35-3.fc40.s390x unzip-6.0-63.fc40.s390x util-linux-2.40-13.fc41.s390x util-linux-core-2.40-13.fc41.s390x which-2.21-41.fc40.s390x xxhash-libs-0.8.2-2.fc40.s390x xz-5.4.6-3.fc41.s390x xz-libs-5.4.6-3.fc41.s390x zig-srpm-macros-1-2.fc40.noarch zip-3.0-40.fc40.s390x zlib-ng-compat-2.1.6-2.fc40.s390x zstd-1.5.6-1.fc41.s390x Start: buildsrpm Start: rpmbuild -bs Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1714003200 Wrote: /builddir/build/SRPMS/R-Biostrings-2.64.1-8.fc41.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-39-s390x-1714136003.493958/root/var/log’: No such file or directory INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-s390x-1714136003.493958/root/var/log/dnf.log /var/lib/mock/fedora-39-s390x-1714136003.493958/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-s390x-1714136003.493958/root/var/log/dnf.rpm.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-yuaosio7/R-Biostrings/R-Biostrings.spec) Config(child) 3 minutes 4 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-Biostrings-2.64.1-8.fc41.src.rpm) Config(fedora-39-s390x) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-s390x-bootstrap-1714136003.493958/root. INFO: reusing tmpfs at /var/lib/mock/fedora-39-s390x-bootstrap-1714136003.493958/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-39-s390x-1714136003.493958/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1.1-1.fc39.s390x rpm-sequoia-1.6.0-1.fc39.s390x python3-dnf-4.19.2-1.fc41.noarch python3-dnf-plugins-core-4.6.0-1.fc41.noarch yum-4.19.2-1.fc41.noarch Finish: chroot init Start: build phase for R-Biostrings-2.64.1-8.fc41.src.rpm Start: build setup for R-Biostrings-2.64.1-8.fc41.src.rpm Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1714003200 Wrote: /builddir/build/SRPMS/R-Biostrings-2.64.1-8.fc41.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 2.3 kB/s | 1.5 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 133 kB/s | 3.8 kB 00:00 fedora 758 B/s | 3.8 kB 00:05 updates 18 kB/s | 4.8 kB 00:00 Dependencies resolved. ===================================================================================================================================================== Package Arch Version Repository Size ===================================================================================================================================================== Installing: R-BiocGenerics noarch 0.42.0-8.fc41 copr_base 643 k R-GenomeInfoDb noarch 1.32.3-7.fc41 copr_base 3.8 M R-IRanges-devel s390x 2.30.1-6.fc40 copr_base 10 k R-S4Vectors-devel s390x 0.34.0-6.fc40 copr_base 14 k R-XVector-devel s390x 0.36.0-6.fc40 copr_base 11 k R-core s390x 4.4.0-1.fc41~bootstrap copr_base 63 M R-crayon noarch 1.5.1-6.fc40 copr_base 180 k R-devel s390x 4.4.0-1.fc41~bootstrap copr_base 11 k texlive-collection-latexrecommended noarch 11:svn65512-71.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11 k Installing dependencies: R-GenomeInfoDbData noarch 1.2.8-7.fc41 copr_base 11 M R-IRanges s390x 2.30.1-6.fc40 copr_base 2.3 M R-RCurl s390x 1.98.1.8-6.fc40 copr_base 863 k R-S4Vectors s390x 0.34.0-6.fc40 copr_base 2.1 M R-XVector s390x 0.36.0-6.fc40 copr_base 648 k R-bitops s390x 1.0.7-11.fc40 copr_base 41 k R-core-devel s390x 4.4.0-1.fc41~bootstrap copr_base 88 k R-java s390x 4.4.0-1.fc41~bootstrap copr_base 11 k R-java-devel s390x 4.4.0-1.fc41~bootstrap copr_base 11 k R-rpm-macros noarch 1.2.1-9.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11 k abattis-cantarell-vf-fonts noarch 0.301-12.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 120 k adobe-mappings-cmap noarch 20230622-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 M adobe-mappings-cmap-deprecated noarch 20230622-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 114 k adobe-mappings-pdf noarch 20190401-7.fc40 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texlive-alphalph-11:svn53087-71.fc40.noarch texlive-amscls-11:svn55378-71.fc40.noarch texlive-amsfonts-11:svn61937-71.fc40.noarch texlive-amsmath-11:svn63514-71.fc40.noarch texlive-anysize-11:svn15878.0-71.fc40.noarch texlive-atbegshi-11:svn53051-71.fc40.noarch texlive-attachfile-11:svn42099-71.fc40.noarch texlive-attachfile2-11:svn57959-84.fc41.noarch texlive-atveryend-11:svn53108-71.fc40.noarch texlive-auto-pst-pdf-11:svn56596-71.fc40.noarch texlive-auxhook-11:svn53173-71.fc40.noarch texlive-avantgar-11:svn61983-71.fc40.noarch texlive-babel-11:svn65823-71.fc40.noarch texlive-babel-english-11:svn44495-71.fc40.noarch texlive-babelbib-11:svn57349-71.fc40.noarch texlive-base-11:20230311-84.fc41.s390x texlive-beamer-11:svn65984-71.fc40.noarch texlive-bera-11:svn20031.0-71.fc40.noarch texlive-beton-11:svn15878.0-71.fc40.noarch texlive-biblatex-11:svn66403-71.fc40.noarch texlive-bibtex-11:svn66186-84.fc41.s390x texlive-bidi-11:svn65572-71.fc40.noarch texlive-bigintcalc-11:svn53172-71.fc40.noarch texlive-bitset-11:svn53837-71.fc40.noarch texlive-bookman-11:svn61719-71.fc40.noarch texlive-bookmark-11:svn56885-71.fc40.noarch texlive-booktabs-11:svn53402-71.fc40.noarch texlive-breakurl-11:svn29901.1.40-71.fc40.noarch texlive-breqn-11:svn60881-71.fc40.noarch texlive-caption-11:svn66580-71.fc40.noarch texlive-carlisle-11:svn59577-71.fc40.noarch texlive-catchfile-11:svn53084-71.fc40.noarch texlive-changepage-11:svn15878.1.0c-71.fc40.noarch texlive-charter-11:svn15878.0-71.fc40.noarch texlive-cite-11:svn36428.5.5-71.fc40.noarch texlive-cm-11:svn57963-71.fc40.noarch texlive-cm-super-11:svn15878.0-71.fc40.noarch texlive-cmap-11:svn57640-71.fc40.noarch texlive-collection-basic-11:svn59159-71.fc40.noarch texlive-collection-latex-11:svn63515-71.fc40.noarch texlive-collection-latexrecommended-11:svn65512-71.fc40.noarch texlive-colorprofiles-11:svn49086-71.fc40.noarch texlive-colortbl-11:svn64015-71.fc40.noarch texlive-courier-11:svn61719-71.fc40.noarch texlive-crop-11:svn55424-71.fc40.noarch texlive-csquotes-11:svn64389-71.fc40.noarch texlive-ctable-11:svn38672-71.fc40.noarch texlive-ctablestack-11:svn38514-71.fc40.noarch texlive-currfile-11:svn64673-71.fc40.noarch texlive-dehyph-11:svn48599-71.fc40.noarch texlive-dvipdfmx-11:svn66203-84.fc41.s390x texlive-dvips-11:svn66203-84.fc41.s390x texlive-ec-11:svn25033.1.0-71.fc40.noarch texlive-enctex-11:svn34957.0-71.fc40.noarch texlive-enumitem-11:svn51423-71.fc40.noarch texlive-epstopdf-11:svn66461-84.fc41.noarch texlive-epstopdf-pkg-11:svn53546-71.fc40.noarch texlive-eso-pic-11:svn56658-71.fc40.noarch texlive-etex-11:svn66203-71.fc40.noarch texlive-etex-pkg-11:svn41784-71.fc40.noarch texlive-etexcmds-11:svn53171-71.fc40.noarch texlive-etoolbox-11:svn56554-71.fc40.noarch texlive-euenc-11:svn19795.0.1h-71.fc40.noarch texlive-euler-11:svn42428-71.fc40.noarch texlive-everysel-11:svn57489-71.fc40.noarch texlive-everyshi-11:svn57001-71.fc40.noarch texlive-extsizes-11:svn17263.1.4a-71.fc40.noarch texlive-fancybox-11:svn18304.1.4-71.fc40.noarch texlive-fancyhdr-11:svn64977-71.fc40.noarch texlive-fancyref-11:svn15878.0.9c-71.fc40.noarch texlive-fancyvrb-11:svn65585-71.fc40.noarch texlive-filecontents-11:svn52142-71.fc40.noarch texlive-filehook-11:svn64822-71.fc40.noarch texlive-finstrut-11:svn21719.0.5-71.fc40.noarch texlive-firstaid-11:svn64892-71.fc40.noarch texlive-fix2col-11:svn38770-71.fc40.noarch texlive-float-11:svn15878.1.3d-71.fc40.noarch texlive-fontspec-11:svn63386-71.fc40.noarch texlive-footmisc-11:svn62524-71.fc40.noarch texlive-footnotehyper-11:svn60374-71.fc40.noarch texlive-fp-11:svn49719-71.fc40.noarch texlive-fpl-11:svn54512-71.fc40.noarch texlive-geometry-11:svn61719-71.fc40.noarch texlive-gettitlestring-11:svn53170-71.fc40.noarch texlive-glyphlist-11:svn54074-84.fc41.noarch texlive-graphics-11:svn66204-71.fc40.noarch texlive-graphics-cfg-11:svn41448-71.fc40.noarch texlive-graphics-def-11:svn64487-71.fc40.noarch texlive-grfext-11:svn53024-71.fc40.noarch texlive-grffile-11:svn52756-71.fc40.noarch texlive-gsftopk-11:svn52851-84.fc41.s390x texlive-helvetic-11:svn61719-71.fc40.noarch texlive-hobsub-11:svn52810-71.fc40.noarch texlive-hologo-11:svn61719-71.fc40.noarch texlive-hopatch-11:svn65491-71.fc40.noarch texlive-hycolor-11:svn53584-71.fc40.noarch texlive-hypdoc-11:svn65678-71.fc40.noarch texlive-hyperref-11:svn65758-71.fc40.noarch texlive-hyph-utf8-11:svn61719-71.fc40.noarch texlive-hyphen-base-11:svn66413-71.fc40.noarch texlive-hyphenex-11:svn57387-71.fc40.noarch texlive-ifmtarg-11:svn47544-71.fc40.noarch texlive-ifplatform-11:svn45533-71.fc40.noarch texlive-iftex-11:svn61910-71.fc40.noarch texlive-index-11:svn24099.4.1beta-71.fc40.noarch texlive-infwarerr-11:svn53023-71.fc40.noarch texlive-intcalc-11:svn53168-71.fc40.noarch texlive-jknapltx-11:svn19440.0-71.fc40.noarch texlive-kastrup-11:svn15878.0-71.fc40.noarch texlive-knuth-lib-11:svn57963-71.fc40.noarch texlive-knuth-local-11:svn57963-71.fc40.noarch texlive-koma-script-11:svn64685-71.fc40.noarch texlive-kpathsea-11:svn66209-84.fc41.s390x texlive-kvdefinekeys-11:svn53193-71.fc40.noarch texlive-kvoptions-11:svn63622-71.fc40.noarch texlive-kvsetkeys-11:svn64632-71.fc40.noarch texlive-l3backend-11:svn65573-71.fc40.noarch texlive-l3experimental-11:svn65621-71.fc40.noarch texlive-l3kernel-11:svn66094-71.fc40.noarch texlive-l3packages-11:svn65722-71.fc40.noarch texlive-latex-11:svn65161-84.fc41.noarch texlive-latex-fonts-11:svn28888.0-71.fc40.noarch texlive-latex-lab-11:svn64892-71.fc40.noarch texlive-latexbug-11:svn63596-71.fc40.noarch texlive-latexconfig-11:svn53525-71.fc40.noarch texlive-letltxmacro-11:svn53022-71.fc40.noarch texlive-lib-11:20230311-84.fc41.s390x texlive-lineno-11:svn65586-71.fc40.noarch texlive-listings-11:svn66222-71.fc40.noarch texlive-lm-11:svn65956-71.fc40.noarch texlive-lm-math-11:svn36915.1.959-71.fc40.noarch texlive-logreq-11:svn53003-71.fc40.noarch texlive-ltabptch-11:svn17533.1.74d-71.fc40.noarch texlive-ltxcmds-11:svn56421-71.fc40.noarch texlive-ltxmisc-11:svn21927.0-71.fc40.noarch texlive-lua-alt-getopt-11:svn56414-71.fc40.noarch texlive-lua-uni-algos-11:svn62204-71.fc40.noarch texlive-luabidi-11:svn54512-71.fc40.noarch texlive-luahbtex-11:svn66186-84.fc41.s390x texlive-lualatex-math-11:svn61464-71.fc40.noarch texlive-lualibs-11:svn64615-71.fc40.noarch texlive-luaotfload-11:svn64616-84.fc41.noarch texlive-luatex-11:svn66967-84.fc41.s390x texlive-luatexbase-11:svn52663-71.fc40.noarch texlive-lwarp-11:svn66259-84.fc41.noarch texlive-makecmds-11:svn15878.0-71.fc40.noarch texlive-makeindex-11:svn62517-84.fc41.s390x texlive-marginnote-11:svn48383-71.fc40.noarch texlive-marvosym-11:svn29349.2.2a-71.fc40.noarch texlive-mathpazo-11:svn52663-71.fc40.noarch texlive-mathspec-11:svn42773-71.fc40.noarch texlive-mathtools-11:svn63767-71.fc40.noarch texlive-mdwtools-11:svn15878.1.05.4-71.fc40.noarch texlive-memoir-11:svn65040-71.fc40.noarch texlive-metafont-11:svn66186-84.fc41.s390x texlive-metalogo-11:svn18611.0.12-71.fc40.noarch texlive-mflogo-11:svn42428-71.fc40.noarch texlive-mfnfss-11:svn46036-71.fc40.noarch texlive-mfware-11:svn66186-84.fc41.s390x texlive-microtype-11:svn66587-71.fc40.noarch texlive-minitoc-11:svn61719-71.fc40.noarch texlive-mnsymbol-11:svn18651.1.4-71.fc40.noarch texlive-modes-11:svn61719-71.fc40.noarch texlive-mparhack-11:svn59066-71.fc40.noarch texlive-mptopdf-11:svn65952-84.fc41.noarch texlive-ms-11:svn57473-71.fc40.noarch texlive-multido-11:svn18302.1.42-71.fc40.noarch texlive-natbib-11:svn20668.8.31b-71.fc40.noarch texlive-newfloat-11:svn52906-71.fc40.noarch texlive-notoccite-11:svn18129.0-71.fc40.noarch texlive-ntgclass-11:svn65522-71.fc40.noarch texlive-oberdiek-11:svn65521-84.fc41.noarch texlive-pagesel-11:svn56105-71.fc40.noarch texlive-palatino-11:svn61719-71.fc40.noarch texlive-paralist-11:svn43021-71.fc40.noarch texlive-parallel-11:svn15878.0-71.fc40.noarch texlive-parskip-11:svn58358-71.fc40.noarch texlive-pdfcol-11:svn64469-71.fc40.noarch texlive-pdfcolfoot-11:svn65512-71.fc40.noarch texlive-pdfcolmk-11:svn52912-71.fc40.noarch texlive-pdfescape-11:svn53082-71.fc40.noarch texlive-pdflscape-11:svn64851-71.fc40.noarch texlive-pdfmanagement-testphase-11:svn66532-71.fc40.noarch texlive-pdfpages-11:svn65319-71.fc40.noarch texlive-pdftex-11:svn66243-84.fc41.s390x texlive-pdftexcmds-11:svn55777-71.fc40.noarch texlive-pgf-11:svn65553-71.fc40.noarch texlive-picture-11:svn54867-71.fc40.noarch texlive-placeins-11:svn19848.2.2-71.fc40.noarch texlive-plain-11:svn57963-71.fc40.noarch texlive-polyglossia-11:svn65792-71.fc40.noarch texlive-psfrag-11:svn15878.3.04-71.fc40.noarch texlive-pslatex-11:svn57434-71.fc40.noarch texlive-psnfss-11:svn54694-71.fc40.noarch texlive-pspicture-11:svn15878.0-71.fc40.noarch texlive-pst-3d-11:svn17257.1.10-71.fc40.noarch texlive-pst-coil-11:svn62977-71.fc40.noarch texlive-pst-eps-11:svn15878.1.0-71.fc40.noarch texlive-pst-fill-11:svn60671-71.fc40.noarch texlive-pst-grad-11:svn15878.1.06-71.fc40.noarch texlive-pst-math-11:svn64732-71.fc40.noarch texlive-pst-node-11:svn61838-71.fc40.noarch texlive-pst-ovl-11:svn54963-71.fc40.noarch texlive-pst-plot-11:svn65346-71.fc40.noarch texlive-pst-text-11:svn49542-71.fc40.noarch texlive-pst-tools-11:svn60621-71.fc40.noarch texlive-pst-tree-11:svn60421-71.fc40.noarch texlive-pstricks-11:svn65346-71.fc40.noarch texlive-pstricks-add-11:svn65067-71.fc40.noarch texlive-ragged2e-11:svn66152-71.fc40.noarch texlive-rcs-11:svn15878.0-71.fc40.noarch texlive-realscripts-11:svn56594-71.fc40.noarch texlive-refcount-11:svn53164-71.fc40.noarch texlive-rerunfilecheck-11:svn63869-71.fc40.noarch texlive-rsfs-11:svn15878.0-71.fc40.noarch texlive-sansmath-11:svn17997.1.1-71.fc40.noarch texlive-sansmathaccent-11:svn53628-71.fc40.noarch texlive-sauerj-11:svn15878.0-71.fc40.noarch texlive-section-11:svn20180.0-71.fc40.noarch texlive-seminar-11:svn59801-71.fc40.noarch texlive-sepnum-11:svn20186.2.0-71.fc40.noarch texlive-setspace-11:svn65206-71.fc40.noarch texlive-showexpl-11:svn57414-71.fc40.noarch texlive-stringenc-11:svn52982-71.fc40.noarch texlive-subfig-11:svn15878.1.3-71.fc40.noarch texlive-symbol-11:svn61719-71.fc40.noarch texlive-tex-11:svn66186-84.fc41.s390x texlive-tex-ini-files-11:svn40533-71.fc40.noarch texlive-texlive-common-doc-11:svn54176-71.fc40.noarch texlive-texlive-en-11:svn66572-84.fc41.noarch texlive-texlive-msg-translations-11:svn66593-71.fc40.noarch texlive-texlive-scripts-11:svn66584-84.fc41.noarch texlive-texlive.infra-11:svn66512-84.fc41.noarch texlive-textcase-11:svn63868-71.fc40.noarch texlive-thumbpdf-11:svn62518-84.fc41.noarch texlive-times-11:svn61719-71.fc40.noarch texlive-tipa-11:svn29349.1.3-71.fc40.noarch texlive-titlesec-11:svn59845-71.fc40.noarch texlive-tools-11:svn64892-71.fc40.noarch texlive-translator-11:svn59412-71.fc40.noarch texlive-transparent-11:svn64852-71.fc40.noarch texlive-typehtml-11:svn17134.0-71.fc40.noarch texlive-ucharcat-11:svn38907-71.fc40.noarch texlive-ucs-11:svn64114-71.fc40.noarch texlive-underscore-11:svn18261.0-71.fc40.noarch texlive-unicode-data-11:svn64423-71.fc40.noarch texlive-unicode-math-11:svn61719-71.fc40.noarch texlive-uniquecounter-11:svn53162-71.fc40.noarch texlive-url-11:svn32528.3.4-71.fc40.noarch texlive-utopia-11:svn15878.0-71.fc40.noarch texlive-varwidth-11:svn24104.0.92-71.fc40.noarch texlive-xcolor-11:svn63563-71.fc40.noarch texlive-xdvi-11:svn62387-84.fc41.s390x texlive-xetex-11:svn66203-84.fc41.s390x texlive-xetexconfig-11:svn45845-71.fc40.noarch texlive-xifthen-11:svn38929-71.fc40.noarch texlive-xkeyval-11:svn63616-71.fc40.noarch texlive-xltxtra-11:svn56594-71.fc40.noarch texlive-xpatch-11:svn54563-71.fc40.noarch texlive-xstring-11:svn65551-71.fc40.noarch texlive-xunicode-11:svn30466.0.981-71.fc40.noarch texlive-zapfding-11:svn61719-71.fc40.noarch texlive-zref-11:svn62977-71.fc40.noarch tk-1:8.6.14-1.fc41.s390x tk-devel-1:8.6.14-1.fc41.s390x tre-0.8.0-43.20140228gitc2f5d13.fc40.s390x tre-common-0.8.0-43.20140228gitc2f5d13.fc40.noarch tre-devel-0.8.0-43.20140228gitc2f5d13.fc40.s390x ttmkfdir-3.0.9-70.fc40.s390x tzdata-2024a-5.fc41.noarch tzdata-java-2024a-5.fc41.noarch urw-base35-bookman-fonts-20200910-20.fc41.noarch urw-base35-c059-fonts-20200910-20.fc41.noarch urw-base35-d050000l-fonts-20200910-20.fc41.noarch urw-base35-fonts-20200910-20.fc41.noarch urw-base35-fonts-common-20200910-20.fc41.noarch urw-base35-gothic-fonts-20200910-20.fc41.noarch urw-base35-nimbus-mono-ps-fonts-20200910-20.fc41.noarch urw-base35-nimbus-roman-fonts-20200910-20.fc41.noarch urw-base35-nimbus-sans-fonts-20200910-20.fc41.noarch urw-base35-p052-fonts-20200910-20.fc41.noarch urw-base35-standard-symbols-ps-fonts-20200910-20.fc41.noarch urw-base35-z003-fonts-20200910-20.fc41.noarch xdg-utils-1.2.1-1.fc41.noarch xml-common-0.6.3-63.fc40.noarch xorg-x11-fonts-Type1-7.5-38.fc40.noarch xorg-x11-proto-devel-2024.1-1.fc41.noarch xpdf-libs-1:4.05-3.fc41.s390x xz-devel-1:5.4.6-3.fc41.s390x zlib-ng-compat-devel-2.1.6-2.fc40.s390x zziplib-0.13.72-6.fc40.s390x Complete! Finish: build setup for R-Biostrings-2.64.1-8.fc41.src.rpm Start: rpmbuild R-Biostrings-2.64.1-8.fc41.src.rpm Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1714003200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.H3qP1S + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf Biostrings + /usr/bin/mkdir -p Biostrings + cd Biostrings + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Biostrings_2.64.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + rm -rf /builddir/build/BUILD/Biostrings-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/Biostrings-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.12DpCV + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Biostrings + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.ZNTkcX + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.s390x '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.s390x ++ dirname /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.s390x + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.s390x + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Biostrings + rm -rf /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.s390x + mkdir -p /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.s390x/usr/lib64/R/library + R CMD INSTALL Biostrings -l /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.s390x/usr/lib64/R/library * installing *source* package ‘Biostrings’ ... ** using staged installation ** libs using C compiler: ‘gcc (GCC) 14.0.1 20240411 (Red Hat 14.0.1-0)’ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c BAB_class.c -o BAB_class.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c BitMatrix.c -o BitMatrix.o BitMatrix.c:299:13: warning: ‘BitMatrix_print’ defined but not used [-Wunused-function] 299 | static void BitMatrix_print(BitMatrix *bitmat) | ^~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c IRanges_stubs.c -o IRanges_stubs.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c MIndex_class.c -o MIndex_class.o MIndex_class.c: In function ‘SparseMIndex_endIndex’: MIndex_class.c:184:27: warning: unused variable ‘poffsets_order’ [-Wunused-variable] 184 | IntAE *poffsets, *poffsets_order; | ^~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c PreprocessedTB_class.c -o PreprocessedTB_class.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c R_init_Biostrings.c -o R_init_Biostrings.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c RoSeqs_utils.c -o RoSeqs_utils.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c SparseList_utils.c -o SparseList_utils.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c XStringSetList_class.c -o XStringSetList_class.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c XStringSet_class.c -o XStringSet_class.o XStringSet_class.c: In function ‘new_XStringSet_from_CHARACTER’: XStringSet_class.c:124:17: warning: ‘lkup_len’ may be used uninitialized [-Wmaybe-uninitialized] 124 | _copy_CHARSXP_to_Chars_holder(&ans_elt_holder, x_elt, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | INTEGER(start)[i], lkup0, lkup_len); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ XStringSet_class.c:103:22: note: ‘lkup_len’ was declared here 103 | int ans_len, lkup_len, i; | ^~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c XString_class.c -o XString_class.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c XVector_stubs.c -o XVector_stubs.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c align_needwunsQS.c -o align_needwunsQS.o align_needwunsQS.c: In function ‘align_needwunsQS’: align_needwunsQS.c:155:29: warning: ‘sc’ may be used uninitialized [-Wmaybe-uninitialized] 155 | INTEGER(ans_elt)[0] = score; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~ align_needwunsQS.c:27:19: note: ‘sc’ was declared here 27 | int *sco, sc, n1, n2, i1, i2, j1, j2, al_buf_size; | ^~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c align_pairwiseAlignment.c -o align_pairwiseAlignment.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c align_utils.c -o align_utils.o align_utils.c: In function ‘PairwiseAlignmentsSingleSubject_align_aligned’: align_utils.c:232:65: warning: ‘indelStartPattern’ may be used uninitialized [-Wmaybe-uninitialized] 232 | if ((numberOfIndelPattern == 0) || (jPattern < indelStartPattern)) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ align_utils.c:221:21: note: ‘indelStartPattern’ was declared here 221 | int indelStartPattern, indelWidthPattern, indelStartSubject, indelWidthSubject; | ^~~~~~~~~~~~~~~~~ align_utils.c:238:55: warning: ‘indelWidthPattern’ may be used uninitialized [-Wmaybe-uninitialized] 238 | for (k = 0; k < indelWidthPattern; k++) { | ~~^~~~~~~~~~~~~~~~~~~ align_utils.c:221:40: note: ‘indelWidthPattern’ was declared here 221 | int indelStartPattern, indelWidthPattern, indelStartSubject, indelWidthSubject; | ^~~~~~~~~~~~~~~~~ align_utils.c:231:57: warning: ‘indelStartSubject’ may be used uninitialized [-Wmaybe-uninitialized] 231 | if ((numberOfIndelSubject == 0) || (j < indelStartSubject)) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ align_utils.c:221:59: note: ‘indelStartSubject’ was declared here 221 | int indelStartPattern, indelWidthPattern, indelStartSubject, indelWidthSubject; | ^~~~~~~~~~~~~~~~~ align_utils.c:250:42: warning: ‘indelWidthSubject’ may be used uninitialized [-Wmaybe-uninitialized] 250 | jPattern += indelWidthSubject; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ align_utils.c:221:78: note: ‘indelWidthSubject’ was declared here 221 | int indelStartPattern, indelWidthPattern, indelStartSubject, indelWidthSubject; | ^~~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c find_palindromes.c -o find_palindromes.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c gtestsim.c -o gtestsim.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c inject_code.c -o inject_code.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c letter_frequency.c -o letter_frequency.o letter_frequency.c: In function ‘XString_letterFrequencyInSlidingView’: letter_frequency.c:536:31: warning: too many arguments for format [-Wformat-extra-args] 536 | error("Biostrings internal error in " | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ letter_frequency.c: In function ‘XStringSet_letterFrequency’: letter_frequency.c:589:31: warning: too many arguments for format [-Wformat-extra-args] 589 | error("Biostrings internal error in " | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ letter_frequency.c: In function ‘XStringSet_two_way_letter_frequency’: letter_frequency.c:957:48: warning: unused variable ‘x_pos’ [-Wunused-variable] 957 | int x_width, y_width, x_length, *ans_mat, i, x_pos; | ^~~~~ letter_frequency.c:956:13: warning: unused variable ‘ans_dimnames’ [-Wunused-variable] 956 | SEXP ans, ans_dimnames; | ^~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c lowlevel_matching.c -o lowlevel_matching.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c match_PWM.c -o match_PWM.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c match_pattern.c -o match_pattern.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c match_pattern_boyermoore.c -o match_pattern_boyermoore.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c match_pattern_indels.c -o match_pattern_indels.o match_pattern_indels.c:7:13: warning: ‘test_match_pattern_indels’ defined but not used [-Wunused-function] 7 | static void test_match_pattern_indels(const char *p, const char *s, | ^~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c match_pattern_shiftor.c -o match_pattern_shiftor.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c match_pdict.c -o match_pdict.o In function ‘vcount_PDict3Parts_XStringSet’, inlined from ‘vmatch_PDict3Parts_XStringSet’ at match_pdict.c:508:10: match_pdict.c:419:33: warning: ‘ans_col’ may be used uninitialized [-Wmaybe-uninitialized] 419 | ans_col += tb_length; | ~~~~~~~~^~~~~~~~~~~~ match_pdict.c: In function ‘vmatch_PDict3Parts_XStringSet’: match_pdict.c:392:65: note: ‘ans_col’ was declared here 392 | int tb_length, S_length, collapse0, i, j, match_count, *ans_col; | ^~~~~~~ In function ‘vcount_XStringSet_XStringSet’, inlined from ‘vmatch_XStringSet_XStringSet’ at match_pdict.c:542:10: match_pdict.c:470:41: warning: ‘ans_elt’ may be used uninitialized [-Wmaybe-uninitialized] 470 | ans_elt += P_length; | ~~~~~~~~^~~~~~~~~~~ match_pdict.c: In function ‘vmatch_XStringSet_XStringSet’: match_pdict.c:441:64: note: ‘ans_elt’ was declared here 441 | int P_length, S_length, collapse0, i, j, match_count, *ans_elt; | ^~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c match_pdict_ACtree2.c -o match_pdict_ACtree2.o match_pdict_ACtree2.c: In function ‘ACtree2_summary’: match_pdict_ACtree2.c:732:45: warning: unknown conversion type character ‘)’ in format [-Wformat=] 732 | Rprintf("| - %u nodes (%.2f%) with %d links\n", | ^ match_pdict_ACtree2.c: In function ‘split_and_move_pointers’: match_pdict_ACtree2.c:1031:17: warning: variable ‘node0’ set but not used [-Wunused-but-set-variable] 1031 | ACnode *node0, *node1, *node2; | ^~~~~ match_pdict_ACtree2.c: In function ‘merge_pointers’: match_pdict_ACtree2.c:1076:17: warning: variable ‘node0’ set but not used [-Wunused-but-set-variable] 1076 | ACnode *node0, *node1, *node2; | ^~~~~ match_pdict_ACtree2.c: At top level: match_pdict_ACtree2.c:602:21: warning: ‘a_nice_max_nodeextbuf_nelt’ defined but not used [-Wunused-function] 602 | static unsigned int a_nice_max_nodeextbuf_nelt(int nnodes) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ match_pdict_ACtree2.c:139:13: warning: ‘debug_node_counting_functions’ defined but not used [-Wunused-function] 139 | static void debug_node_counting_functions(int maxdepth) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c match_pdict_Twobit.c -o match_pdict_Twobit.o In file included from /usr/include/R/Rdefines.h:41, from /usr/lib64/R/library/S4Vectors/include/S4Vectors_defines.h:18, from /usr/lib64/R/library/IRanges/include/IRanges_defines.h:18, from ../inst/include/Biostrings_defines.h:18, from Biostrings.h:1, from match_pdict_Twobit.c:10: In function ‘Twobit_asLIST’, inlined from ‘build_Twobit’ at match_pdict_Twobit.c:145:2: match_pdict_Twobit.c:75:27: warning: ‘twobit_sign2pos’ may be used uninitialized [-Wmaybe-uninitialized] 75 | PROTECT(ans_elt = new_XInteger_from_tag("XInteger", twobit_sign2pos)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ match_pdict_Twobit.c: In function ‘build_Twobit’: match_pdict_Twobit.c:110:19: note: ‘twobit_sign2pos’ was declared here 110 | SEXP ans, twobit_sign2pos; | ^~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c match_pdict_utils.c -o match_pdict_utils.o match_pdict_utils.c: In function ‘match_ppheadtail0’: match_pdict_utils.c:653:56: warning: unused variable ‘ncol’ [-Wunused-variable] 653 | int nelt, min_safe_tb_end, max_safe_tb_end, j, ncol; | ^~~~ match_pdict_utils.c: In function ‘match_ppheadtail’: match_pdict_utils.c:713:13: warning: unused variable ‘nelt’ [-Wunused-variable] 713 | int nelt, nkey0, nkey1, nkey2, i, key; | ^~~~ match_pdict_utils.c: In function ‘_match_pdict_all_flanks’: match_pdict_utils.c:820:51: warning: unused variable ‘subtotal_NFC’ [-Wunused-variable] 820 | static unsigned long int total_NFC = 0UL, subtotal_NFC = 0UL; | ^~~~~~~~~~~~ match_pdict_utils.c:820:34: warning: unused variable ‘total_NFC’ [-Wunused-variable] 820 | static unsigned long int total_NFC = 0UL, subtotal_NFC = 0UL; | ^~~~~~~~~ match_pdict_utils.c:819:40: warning: unused variable ‘NFC’ [-Wunused-variable] 819 | unsigned long int ndup, nloci, NFC; // NFC = Number of Flank Comparisons | ^~~ match_pdict_utils.c:819:33: warning: unused variable ‘nloci’ [-Wunused-variable] 819 | unsigned long int ndup, nloci, NFC; // NFC = Number of Flank Comparisons | ^~~~~ match_pdict_utils.c:819:27: warning: unused variable ‘ndup’ [-Wunused-variable] 819 | unsigned long int ndup, nloci, NFC; // NFC = Number of Flank Comparisons | ^~~~ match_pdict_utils.c: At top level: match_pdict_utils.c:261:13: warning: ‘match_headtail_by_loc’ defined but not used [-Wunused-function] 261 | static void match_headtail_by_loc(const HeadTail *headtail, | ^~~~~~~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c match_reporting.c -o match_reporting.o match_reporting.c: In function ‘_new_MatchBuf’: match_reporting.c:49:23: warning: too many arguments for format [-Wformat-extra-args] 49 | error("Biostrings internal error in _new_MatchBuf(): ", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c matchprobes.c -o matchprobes.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c pmatchPattern.c -o pmatchPattern.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c read_fasta_files.c -o read_fasta_files.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c read_fastq_files.c -o read_fastq_files.o read_fastq_files.c: In function ‘parse_FASTQ_file’: read_fastq_files.c:415:28: warning: ‘dont_load’ may be used uninitialized [-Wmaybe-uninitialized] 415 | if (dont_load || loader->new_empty_qual_hook == NULL) | ^ read_fastq_files.c:309:26: note: ‘dont_load’ was declared here 309 | lineinrecno, dont_load; | ^~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c replaceAt.c -o replaceAt.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c replace_letter_at.c -o replace_letter_at.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c strutils.c -o strutils.o strutils.c: In function ‘MP_longestConsecutive’: strutils.c:50:72: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 50 | error("'letter' must contain exactly one character but contains %d.", | ~^ | | | int | %ld 51 | strlen(pc)); | ~~~~~~~~~~ | | | size_t {aka long unsigned int} gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c translate.c -o translate.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c unstrsplit_methods.c -o unstrsplit_methods.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c utils.c -o utils.o utils.c: In function ‘_get_twobit_signature’: utils.c:157:16: warning: ‘twobit_sign’ may be used uninitialized [-Wmaybe-uninitialized] 157 | return twobit_sign; | ^~~~~~~~~~~ utils.c:150:16: note: ‘twobit_sign’ was declared here 150 | int i, twobit_sign; | ^~~~~~~~~~~ utils.c: In function ‘_get_twobit_signature_at’: utils.c:174:16: warning: ‘twobit_sign’ may be used uninitialized [-Wmaybe-uninitialized] 174 | return twobit_sign; | ^~~~~~~~~~~ utils.c:164:19: note: ‘twobit_sign’ was declared here 164 | int i, j, twobit_sign; | ^~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -c xscat.c -o xscat.o In file included from /usr/include/R/Rdefines.h:41, from /usr/lib64/R/library/S4Vectors/include/S4Vectors_defines.h:18, from /usr/lib64/R/library/IRanges/include/IRanges_defines.h:18, from ../inst/include/Biostrings_defines.h:18, from Biostrings.h:1, from xscat.c:1: xscat.c: In function ‘XString_xscat’: /usr/include/R/Rdefines.h:91:33: warning: ‘ans_length’ may be used uninitialized [-Wmaybe-uninitialized] 91 | #define NEW_RAW(n) Rf_allocVector(RAWSXP,n) | ^~~~~~~~~~~~~~~~~~~~~~~~ xscat.c:18:20: note: ‘ans_length’ was declared here 18 | int nargs, ans_length, tag_offset, j; | ^~~~~~~~~~ xscat.c:52:23: warning: ‘ans_classname’ may be used uninitialized [-Wmaybe-uninitialized] 52 | PROTECT(ans = new_XRaw_from_tag(ans_classname, ans_tag)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ xscat.c:20:21: note: ‘ans_classname’ was declared here 20 | const char *ans_classname; | ^~~~~~~~~~~~~ xscat.c: In function ‘XStringSet_xscat’: /usr/include/R/Rdefines.h:85:33: warning: ‘ans_length’ may be used uninitialized [-Wmaybe-uninitialized] 85 | #define NEW_INTEGER(n) Rf_allocVector(INTSXP,n) | ^~~~~~~~~~~~~~~~~~~~~~~~ xscat.c:66:39: note: ‘ans_length’ was declared here 66 | int nargs, *arg_lengths, *ii, ans_length, i, j, *width; | ^~~~~~~~~~ xscat.c:108:23: warning: ‘ans_element_type’ may be used uninitialized [-Wmaybe-uninitialized] 108 | PROTECT(ans = _alloc_XStringSet(ans_element_type, ans_width)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ xscat.c:68:21: note: ‘ans_element_type’ was declared here 68 | const char *ans_element_type; | ^~~~~~~~~~~~~~~~ gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o Biostrings.so BAB_class.o BitMatrix.o IRanges_stubs.o MIndex_class.o PreprocessedTB_class.o R_init_Biostrings.o RoSeqs_utils.o S4Vectors_stubs.o SparseList_utils.o XStringSetList_class.o XStringSet_class.o XString_class.o XVector_stubs.o align_needwunsQS.o align_pairwiseAlignment.o align_utils.o find_palindromes.o gtestsim.o inject_code.o letter_frequency.o lowlevel_matching.o match_PWM.o match_pattern.o match_pattern_boyermoore.o match_pattern_indels.o match_pattern_shiftor.o match_pdict.o match_pdict_ACtree2.o match_pdict_Twobit.o match_pdict_utils.o match_reporting.o matchprobes.o pmatchPattern.o read_fasta_files.o read_fastq_files.o replaceAt.o replace_letter_at.o strutils.o translate.o unstrsplit_methods.o utils.o xscat.o -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.s390x/usr/lib64/R/library/00LOCK-Biostrings/00new/Biostrings/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Warning message: multiple methods tables found for ‘sort’ in method for ‘twoWayAlphabetFrequencyByQuality’ with signature ‘"QualityScaledXStringSet"’: no definition for class “QualityScaledXStringSet” Creating a new generic function for ‘strsplit’ in package ‘Biostrings’ Creating a generic function for ‘ls’ from package ‘base’ in package ‘Biostrings’ Creating a new generic function for ‘pattern’ in package ‘Biostrings’ Creating a new generic function for ‘offset’ in package ‘Biostrings’ ** help *** installing help indices converting help for package ‘Biostrings’ finding HTML links ... done AAString-class html AMINO_ACID_CODE html AlignedXStringSet-class html Biostrings-internals html DNAString-class html GENETIC_CODE html HNF4alpha html IUPAC_CODE_MAP html InDel-class html MIndex-class html MaskedXString-class html MultipleAlignment-class html finding level-2 HTML links ... done PDict-class html PairwiseAlignments-class html PairwiseAlignments-io html QualityScaledXStringSet-class html RNAString-class html XString-class html XStringPartialMatches-class html XStringQuality-class html XStringSet-class html XStringSet-comparison html XStringSet-io html XStringSetList-class html XStringViews-class html align-utils html chartr html detail html dinucleotideFrequencyTest html findPalindromes html getSeq html gregexpr2 html injectHardMask html letter html letterFrequency html longestConsecutive html lowlevel-matching html maskMotif html match-utils html matchLRPatterns html matchPDict-exact html matchPDict-inexact html matchPWM html matchPattern html matchProbePair html matchprobes html misc html needwunsQS html nucleotideFrequency html padAndClip html pairwiseAlignment html phiX174Phage html pid html pmatchPattern html replaceAt html replaceLetterAt html reverseComplement html seqinfo html stringDist html substitution_matrices html toComplex html translate html trimLRPatterns html xscat html yeastSEQCHR1 html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: multiple methods tables found for ‘sort’ Warning: multiple methods tables found for ‘sort’ ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location Warning: multiple methods tables found for ‘sort’ Warning: multiple methods tables found for ‘sort’ ** testing if installed package keeps a record of temporary installation path * DONE (Biostrings) + test -d Biostrings/src + cd Biostrings/src + rm -f BAB_class.o BitMatrix.o IRanges_stubs.o MIndex_class.o PreprocessedTB_class.o R_init_Biostrings.o RoSeqs_utils.o S4Vectors_stubs.o SparseList_utils.o XStringSetList_class.o XStringSet_class.o XString_class.o XVector_stubs.o align_needwunsQS.o align_pairwiseAlignment.o align_utils.o find_palindromes.o gtestsim.o inject_code.o letter_frequency.o lowlevel_matching.o match_PWM.o match_pattern.o match_pattern_boyermoore.o match_pattern_indels.o match_pattern_shiftor.o match_pdict.o match_pdict_ACtree2.o match_pdict_Twobit.o match_pdict_utils.o match_reporting.o matchprobes.o pmatchPattern.o read_fasta_files.o read_fastq_files.o replaceAt.o replace_letter_at.o strutils.o translate.o unstrsplit_methods.o utils.o xscat.o Biostrings.so + rm -rf /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.s390x/usr/lib64/R/library/R.css + rm -f /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.s390x/usr/lib64/R/library/Biostrings/doc/GenomeSearching.R + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.64.1-8.fc41 --unique-debug-suffix -2.64.1-8.fc41.s390x --unique-debug-src-base R-Biostrings-2.64.1-8.fc41.s390x --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/Biostrings find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-Biostrings-2.64.1-8.fc41.s390x 807 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.TvbwcY + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS Processing files: R-Biostrings-2.64.1-8.fc41.s390x + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Biostrings + RPM_EC=0 ++ jobs -p + exit 0 Provides: R(Biostrings) = 2.64.1 R-Biostrings = 2.64.1-8.fc41 R-Biostrings(s390-64) = 2.64.1-8.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: R(ABI) = 4.4 R(BiocGenerics) >= 0.37.0 R(GenomeInfoDb) R(IRanges) >= 2.30.1 R(S4Vectors) >= 0.27.12 R(XVector) >= 0.29.2 R(crayon) R(grDevices) R(graphics) R(methods) R(stats) R(utils) R-core >= 4.0.0 libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.2)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) rtld(GNU_HASH) Suggests: R(BSgenome) >= 1.13.14 R(BSgenome.Celegans.UCSC.ce2) >= 1.3.11 R(BSgenome.Dmelanogaster.UCSC.dm3) >= 1.3.11 R(BSgenome.Hsapiens.UCSC.hg18) R(GenomicFeatures) >= 1.3.14 R(RUnit) R(affy) >= 1.41.3 R(affydata) >= 1.11.5 R(drosophila2probe) R(hgu133aprobe) R(hgu95av2cdf) R(hgu95av2probe) Enhances: R(Rmpi) Processing files: R-Biostrings-devel-2.64.1-8.fc41.s390x Provides: R-Biostrings-devel = 2.64.1-8.fc41 R-Biostrings-devel(s390-64) = 2.64.1-8.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-Biostrings-debugsource-2.64.1-8.fc41.s390x Provides: R-Biostrings-debugsource = 2.64.1-8.fc41 R-Biostrings-debugsource(s390-64) = 2.64.1-8.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-Biostrings-debuginfo-2.64.1-8.fc41.s390x Provides: R-Biostrings-debuginfo = 2.64.1-8.fc41 R-Biostrings-debuginfo(s390-64) = 2.64.1-8.fc41 debuginfo(build-id) = a485a642fa6d1c012abc27108f2a26c2bd1598ab Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-Biostrings-debugsource(s390-64) = 2.64.1-8.fc41 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.s390x Wrote: /builddir/build/RPMS/R-Biostrings-debuginfo-2.64.1-8.fc41.s390x.rpm Wrote: /builddir/build/RPMS/R-Biostrings-debugsource-2.64.1-8.fc41.s390x.rpm Wrote: /builddir/build/RPMS/R-Biostrings-devel-2.64.1-8.fc41.s390x.rpm Wrote: /builddir/build/RPMS/R-Biostrings-2.64.1-8.fc41.s390x.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.8FqjBD + umask 022 + cd /builddir/build/BUILD + cd Biostrings + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-Biostrings-2.64.1-8.fc41.s390x + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.hrCXCX + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/Biostrings-SPECPARTS + rm -rf Biostrings Biostrings.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild R-Biostrings-2.64.1-8.fc41.src.rpm Finish: build phase for R-Biostrings-2.64.1-8.fc41.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-39-s390x-1714136003.493958/root/var/log/dnf.log /var/lib/mock/fedora-39-s390x-1714136003.493958/root/var/log/dnf.librepo.log /var/lib/mock/fedora-39-s390x-1714136003.493958/root/var/log/dnf.rpm.log INFO: Done(/var/lib/copr-rpmbuild/results/R-Biostrings-2.64.1-8.fc41.src.rpm) Config(child) 2 minutes 33 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-Biostrings-debugsource", "epoch": null, "version": "2.64.1", "release": "8.fc41", "arch": "s390x" }, { "name": "R-Biostrings", "epoch": null, "version": "2.64.1", "release": "8.fc41", "arch": "src" }, { "name": "R-Biostrings", "epoch": null, "version": "2.64.1", "release": "8.fc41", "arch": "s390x" }, { "name": "R-Biostrings-devel", "epoch": null, "version": "2.64.1", "release": "8.fc41", "arch": "s390x" }, { "name": "R-Biostrings-debuginfo", "epoch": null, "version": "2.64.1", "release": "8.fc41", "arch": "s390x" } ] } RPMResults finished