Warning: Permanently added '169.63.177.226' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7508323-fedora-39-s390x --chroot fedora-39-s390x


Version: 0.73
PID: 18163
Logging PID: 18164
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': True,
 'build_id': 7508323,
 'buildroot_pkgs': [],
 'chroot': 'fedora-39-s390x',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '5c68f6a9db36083946686b5cb383a461971aec92',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/mmseq',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'mmseq',
 'package_version': '1.0.11-19',
 'project_dirname': 'openblas-0.3.23',
 'project_name': 'openblas-0.3.23',
 'project_owner': 'psimovec',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-39-s390x/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None},
           {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/',
            'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch',
            'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}],
 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/churchyard',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'submitter': 'https://src.fedoraproject.org/user/churchyard',
 'tags': [],
 'task_id': '7508323-fedora-39-s390x',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/mmseq /var/lib/copr-rpmbuild/workspace/workdir-dgrtujgj/mmseq --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/mmseq', '/var/lib/copr-rpmbuild/workspace/workdir-dgrtujgj/mmseq', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-dgrtujgj/mmseq'...

Running: git checkout 5c68f6a9db36083946686b5cb383a461971aec92 --

cmd: ['git', 'checkout', '5c68f6a9db36083946686b5cb383a461971aec92', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-dgrtujgj/mmseq
rc: 0
stdout: 
stderr: Note: switching to '5c68f6a9db36083946686b5cb383a461971aec92'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 5c68f6a automatic import of mmseq

Running: copr-distgit-client sources
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-dgrtujgj/mmseq
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading 1.0.11.zip
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o 1.0.11.zip --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/mmseq/1.0.11.zip/md5/c727916d339d7a2111523800b621ce2b/1.0.11.zip
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 2781k  100 2781k    0     0  16.1M      0 --:--:-- --:--:-- --:--:-- 16.2M
INFO: Reading stdout from command: md5sum 1.0.11.zip

Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-dgrtujgj/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-dgrtujgj/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1717106068.170626 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-dgrtujgj/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-dgrtujgj/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1717106068.170626 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-dgrtujgj/mmseq/mmseq.spec)  Config(fedora-39-s390x)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.6
INFO: Mock Version: 5.6
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-39-s390x-bootstrap-1717106068.170626/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:39
INFO: Pulling image: registry.fedoraproject.org/fedora:39
INFO: Copy content of container registry.fedoraproject.org/fedora:39 to /var/lib/mock/fedora-39-s390x-bootstrap-1717106068.170626/root
INFO: Checking that registry.fedoraproject.org/fedora:39 image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:39 with podman image mount
INFO: image registry.fedoraproject.org/fedora:39 as /var/lib/containers/storage/overlay/e611423a3be1d1eadbd265dff894fdff87b723d17eeb94d65954578ad635ccf1/merged
INFO: umounting image registry.fedoraproject.org/fedora:39 (/var/lib/containers/storage/overlay/e611423a3be1d1eadbd265dff894fdff87b723d17eeb94d65954578ad635ccf1/merged) with podman image umount
INFO: Package manager dnf detected and used (fallback)
INFO: Bootstrap image not marked ready
Start(bootstrap): installing dnf tooling
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                 102 MB/s |  16 MB     00:00    
Additional repo http_kojipkgs_fedoraproject_org  95 MB/s |  69 MB     00:00    
fedora                                          9.1 MB/s |  79 MB     00:08    
updates                                         4.2 MB/s |  31 MB     00:07    
Last metadata expiration check: 0:00:05 ago on Thu May 30 21:55:43 2024.
Package python3-dnf-4.19.2-1.fc39.noarch is already installed.
Dependencies resolved.
=========================================================================================================================
 Package                    Arch    Version          Repository                                                      Size
=========================================================================================================================
Installing:
 dnf5                       s390x   5.2.2.0-1.fc41   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  684 k
     replacing  dnf.noarch 4.19.2-1.fc39
     replacing  yum.noarch 4.19.2-1.fc39
 python3-dnf-plugins-core   noarch  4.7.0-1.fc41     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  302 k
Upgrading:
 dnf-data                   noarch  4.20.0-1.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   39 k
 libstdc++                  s390x   14.1.1-4.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  987 k
 python3-dnf                noarch  4.20.0-1.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  580 k
Installing dependencies:
 dbus-libs                  s390x   1:1.14.10-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  159 k
 fmt                        s390x   10.2.1-4.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  129 k
 libdnf5                    s390x   5.2.2.0-1.fc41   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.0 M
 libdnf5-cli                s390x   5.2.2.0-1.fc41   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  311 k
 python3-dateutil           noarch  1:2.8.2-13.fc40  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  345 k
 python3-dbus               s390x   1.3.2-6.fc40     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  146 k
 python3-distro             noarch  1.9.0-3.fc40     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   45 k
 python3-six                noarch  1.16.0-14.fc40   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   41 k
 python3-systemd            s390x   235-9.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  100 k
 sdbus-cpp                  s390x   1.5.0-2.fc41     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  106 k

Transaction Summary
=========================================================================================================================
Install  12 Packages
Upgrade   3 Packages

Total download size: 4.9 M
Downloading Packages:
(1/15): dbus-libs-1.14.10-3.fc40.s390x.rpm       31 kB/s | 159 kB     00:05    
(2/15): fmt-10.2.1-4.fc41.s390x.rpm              25 kB/s | 129 kB     00:05    
(3/15): libdnf5-5.2.2.0-1.fc41.s390x.rpm         40 MB/s | 1.0 MB     00:00    
(4/15): dnf5-5.2.2.0-1.fc41.s390x.rpm           135 kB/s | 684 kB     00:05    
(5/15): libdnf5-cli-5.2.2.0-1.fc41.s390x.rpm     13 MB/s | 311 kB     00:00    
(6/15): python3-dateutil-2.8.2-13.fc40.noarch.r  26 MB/s | 345 kB     00:00    
(7/15): python3-distro-1.9.0-3.fc40.noarch.rpm  5.5 MB/s |  45 kB     00:00    
(8/15): python3-dbus-1.3.2-6.fc40.s390x.rpm      12 MB/s | 146 kB     00:00    
(9/15): python3-systemd-235-9.fc40.s390x.rpm     10 MB/s | 100 kB     00:00    
(10/15): python3-six-1.16.0-14.fc40.noarch.rpm  3.9 MB/s |  41 kB     00:00    
(11/15): python3-dnf-plugins-core-4.7.0-1.fc41.  22 MB/s | 302 kB     00:00    
(12/15): dnf-data-4.20.0-1.fc41.noarch.rpm      9.4 MB/s |  39 kB     00:00    
(13/15): sdbus-cpp-1.5.0-2.fc41.s390x.rpm        11 MB/s | 106 kB     00:00    
(14/15): python3-dnf-4.20.0-1.fc41.noarch.rpm    46 MB/s | 580 kB     00:00    
(15/15): libstdc++-14.1.1-4.fc41.s390x.rpm       31 MB/s | 987 kB     00:00    
--------------------------------------------------------------------------------
Total                                           983 kB/s | 4.9 MB     00:05     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Upgrading        : libstdc++-14.1.1-4.fc41.s390x                         1/20 
  Installing       : fmt-10.2.1-4.fc41.s390x                               2/20 
  Installing       : libdnf5-5.2.2.0-1.fc41.s390x                          3/20 
warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew

  Installing       : libdnf5-cli-5.2.2.0-1.fc41.s390x                      4/20 
  Upgrading        : dnf-data-4.20.0-1.fc41.noarch                         5/20 
  Upgrading        : python3-dnf-4.20.0-1.fc41.noarch                      6/20 
  Installing       : sdbus-cpp-1.5.0-2.fc41.s390x                          7/20 
  Installing       : python3-systemd-235-9.fc40.s390x                      8/20 
  Installing       : python3-six-1.16.0-14.fc40.noarch                     9/20 
  Installing       : python3-dateutil-1:2.8.2-13.fc40.noarch              10/20 
  Installing       : python3-distro-1.9.0-3.fc40.noarch                   11/20 
  Installing       : dbus-libs-1:1.14.10-3.fc40.s390x                     12/20 
  Installing       : python3-dbus-1.3.2-6.fc40.s390x                      13/20 
  Installing       : python3-dnf-plugins-core-4.7.0-1.fc41.noarch         14/20 
  Installing       : dnf5-5.2.2.0-1.fc41.s390x                            15/20 
  Obsoleting       : yum-4.19.2-1.fc39.noarch                             16/20 
  Running scriptlet: dnf-4.19.2-1.fc39.noarch                             17/20 
  Obsoleting       : dnf-4.19.2-1.fc39.noarch                             17/20 
warning: directory /var/cache/dnf: remove failed: Device or resource busy

  Running scriptlet: dnf-4.19.2-1.fc39.noarch                             17/20 
  Cleanup          : python3-dnf-4.19.2-1.fc39.noarch                     18/20 
  Cleanup          : dnf-data-4.19.2-1.fc39.noarch                        19/20 
  Cleanup          : libstdc++-13.3.1-1.fc39.s390x                        20/20 
  Running scriptlet: libstdc++-13.3.1-1.fc39.s390x                        20/20 
  Verifying        : dbus-libs-1:1.14.10-3.fc40.s390x                      1/20 
  Verifying        : dnf5-5.2.2.0-1.fc41.s390x                             2/20 
  Verifying        : dnf-4.19.2-1.fc39.noarch                              3/20 
  Verifying        : yum-4.19.2-1.fc39.noarch                              4/20 
  Verifying        : fmt-10.2.1-4.fc41.s390x                               5/20 
  Verifying        : libdnf5-5.2.2.0-1.fc41.s390x                          6/20 
  Verifying        : libdnf5-cli-5.2.2.0-1.fc41.s390x                      7/20 
  Verifying        : python3-dateutil-1:2.8.2-13.fc40.noarch               8/20 
  Verifying        : python3-dbus-1.3.2-6.fc40.s390x                       9/20 
  Verifying        : python3-distro-1.9.0-3.fc40.noarch                   10/20 
  Verifying        : python3-dnf-plugins-core-4.7.0-1.fc41.noarch         11/20 
  Verifying        : python3-six-1.16.0-14.fc40.noarch                    12/20 
  Verifying        : python3-systemd-235-9.fc40.s390x                     13/20 
  Verifying        : sdbus-cpp-1.5.0-2.fc41.s390x                         14/20 
  Verifying        : dnf-data-4.20.0-1.fc41.noarch                        15/20 
  Verifying        : dnf-data-4.19.2-1.fc39.noarch                        16/20 
  Verifying        : libstdc++-14.1.1-4.fc41.s390x                        17/20 
  Verifying        : libstdc++-13.3.1-1.fc39.s390x                        18/20 
  Verifying        : python3-dnf-4.20.0-1.fc41.noarch                     19/20 
  Verifying        : python3-dnf-4.19.2-1.fc39.noarch                     20/20 

Upgraded:
  dnf-data-4.20.0-1.fc41.noarch            libstdc++-14.1.1-4.fc41.s390x        
  python3-dnf-4.20.0-1.fc41.noarch        
Installed:
  dbus-libs-1:1.14.10-3.fc40.s390x                                              
  dnf5-5.2.2.0-1.fc41.s390x                                                     
  fmt-10.2.1-4.fc41.s390x                                                       
  libdnf5-5.2.2.0-1.fc41.s390x                                                  
  libdnf5-cli-5.2.2.0-1.fc41.s390x                                              
  python3-dateutil-1:2.8.2-13.fc40.noarch                                       
  python3-dbus-1.3.2-6.fc40.s390x                                               
  python3-distro-1.9.0-3.fc40.noarch                                            
  python3-dnf-plugins-core-4.7.0-1.fc41.noarch                                  
  python3-six-1.16.0-14.fc40.noarch                                             
  python3-systemd-235-9.fc40.s390x                                              
  sdbus-cpp-1.5.0-2.fc41.s390x                                                  

Complete!
Finish(bootstrap): installing dnf tooling
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-39-s390x-1717106068.170626/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.1.1-1.fc39.s390x
  rpm-sequoia-1.6.0-1.fc39.s390x
  python3-dnf-4.20.0-1.fc41.noarch
  python3-dnf-plugins-core-4.7.0-1.fc41.noarch
  dnf5-5.2.2.0-1.fc41.s390x
Start: installing minimal buildroot with dnf
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                 6.6 kB/s | 1.5 kB     00:00    
Copr repository                                  72 MB/s |  16 MB     00:00    
Additional repo http_kojipkgs_fedoraproject_org 128 kB/s | 3.8 kB     00:00    
Additional repo http_kojipkgs_fedoraproject_org 150 MB/s |  69 MB     00:00    
fedora                                           29 kB/s | 3.8 kB     00:00    
updates                                         961  B/s | 4.8 kB     00:05    
Dependencies resolved.
============================================================================================================================================
 Package                             Arch    Version                    Repository                                                      Size
============================================================================================================================================
Installing group/module packages:
 bash                                s390x   5.2.26-3.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.8 M
 bzip2                               s390x   1.0.8-18.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   53 k
 coreutils                           s390x   9.5-1.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.2 M
 cpio                                s390x   2.15-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  291 k
 diffutils                           s390x   3.10-5.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  412 k
 fedora-release-common               noarch  41-0.13                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   22 k
 findutils                           s390x   1:4.9.0-8.fc40             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  493 k
 gawk                                s390x   5.3.0-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.1 M
 glibc-minimal-langpack              s390x   2.39.9000-18.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  112 k
 grep                                s390x   3.11-8.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  296 k
 gzip                                s390x   1.13-1.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  171 k
 info                                s390x   7.1-2.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  195 k
 patch                               s390x   2.7.6-24.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  141 k
 redhat-rpm-config                   noarch  291-1.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   76 k
 rpm-build                           s390x   4.19.91-4.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   75 k
 sed                                 s390x   4.9-1.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  312 k
 shadow-utils                        s390x   2:4.15.1-5.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.3 M
 tar                                 s390x   2:1.35-3.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  871 k
 unzip                               s390x   6.0-63.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  195 k
 util-linux                          s390x   2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.1 M
 which                               s390x   2.21-41.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   43 k
 xz                                  s390x   1:5.4.6-3.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  533 k
Installing dependencies:
 add-determinism-nopython            s390x   0.2.0-9.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.0 M
 alternatives                        s390x   1.27-1.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   42 k
 ansible-srpm-macros                 noarch  1-15.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   21 k
 audit-libs                          s390x   4.0.1-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  128 k
 authselect                          s390x   1.5.0-5.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  141 k
 authselect-libs                     s390x   1.5.0-5.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  204 k
 basesystem                          noarch  11-20.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  7.2 k
 binutils                            s390x   2.42.50-11.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  6.1 M
 binutils-gold                       s390x   2.42.50-11.fc41            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  989 k
 build-reproducibility-srpm-macros   noarch  0.2.0-9.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  9.1 k
 bzip2-libs                          s390x   1.0.8-18.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   47 k
 ca-certificates                     noarch  2023.2.62_v7.0.401-6.fc40  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  862 k
 coreutils-common                    s390x   9.5-1.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  2.1 M
 cracklib                            s390x   2.9.11-5.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   84 k
 crypto-policies                     noarch  20240521-1.gitf71d135.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   65 k
 curl                                s390x   8.8.0-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  306 k
 cyrus-sasl-lib                      s390x   2.1.28-22.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  827 k
 debugedit                           s390x   5.0-16.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   82 k
 dwz                                 s390x   0.15-6.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  145 k
 ed                                  s390x   1.20.2-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   83 k
 efi-srpm-macros                     noarch  5-11.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   22 k
 elfutils                            s390x   0.191-7.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  582 k
 elfutils-debuginfod-client          s390x   0.191-7.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   39 k
 elfutils-default-yama-scope         noarch  0.191-7.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   13 k
 elfutils-libelf                     s390x   0.191-7.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  214 k
 elfutils-libs                       s390x   0.191-7.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  282 k
 fedora-gpg-keys                     noarch  41-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  122 k
 fedora-release                      noarch  41-0.13                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   11 k
 fedora-release-identity-basic       noarch  41-0.13                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   12 k
 fedora-repos                        noarch  41-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  9.3 k
 fedora-repos-rawhide                noarch  41-0.2                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  8.9 k
 file                                s390x   5.45-5.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   49 k
 file-libs                           s390x   5.45-5.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  770 k
 filesystem                          s390x   3.18-9.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.1 M
 fonts-srpm-macros                   noarch  1:2.0.5-14.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   27 k
 forge-srpm-macros                   noarch  0.3.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   19 k
 fpc-srpm-macros                     noarch  1.3-12.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  7.8 k
 gdb-minimal                         s390x   14.2-9.fc41                copr_base                                                      4.3 M
 gdbm                                s390x   1:1.23-6.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  152 k
 gdbm-libs                           s390x   1:1.23-6.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   58 k
 ghc-srpm-macros                     noarch  1.9.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  9.0 k
 glibc                               s390x   2.39.9000-18.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.9 M
 glibc-common                        s390x   2.39.9000-18.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  410 k
 glibc-gconv-extra                   s390x   2.39.9000-18.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.7 M
 gmp                                 s390x   1:6.3.0-1.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  329 k
 gnat-srpm-macros                    noarch  6-5.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  8.8 k
 go-srpm-macros                      noarch  3.6.0-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   28 k
 jansson                             s390x   2.13.1-9.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   45 k
 kernel-srpm-macros                  noarch  1.0-23.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  9.8 k
 keyutils-libs                       s390x   1.6.3-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   31 k
 krb5-libs                           s390x   1.21.2-5.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  781 k
 libacl                              s390x   2.3.2-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   25 k
 libarchive                          s390x   3.7.4-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  442 k
 libattr                             s390x   2.5.2-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   18 k
 libblkid                            s390x   2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  130 k
 libbrotli                           s390x   1.1.0-3.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  387 k
 libcap                              s390x   2.70-1.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   89 k
 libcap-ng                           s390x   0.8.5-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   33 k
 libcom_err                          s390x   1.47.0-5.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   25 k
 libcurl                             s390x   8.8.0-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  374 k
 libeconf                            s390x   0.6.2-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   34 k
 libevent                            s390x   2.1.12-13.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  260 k
 libfdisk                            s390x   2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  165 k
 libffi                              s390x   3.4.6-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   36 k
 libgcc                              s390x   14.1.1-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   86 k
 libgomp                             s390x   14.1.1-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  353 k
 libidn2                             s390x   2.3.7-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  113 k
 libmount                            s390x   2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  159 k
 libnghttp2                          s390x   1.62.0-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   80 k
 libnsl2                             s390x   2.0.1-1.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   29 k
 libpkgconf                          s390x   2.1.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   39 k
 libpsl                              s390x   0.21.5-3.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   64 k
 libpwquality                        s390x   1.4.5-9.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  109 k
 libselinux                          s390x   3.6-4.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   92 k
 libsemanage                         s390x   3.6-3.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  120 k
 libsepol                            s390x   3.6-3.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  349 k
 libsmartcols                        s390x   2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   86 k
 libssh                              s390x   0.10.6-6.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  211 k
 libssh-config                       noarch  0.10.6-6.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  9.1 k
 libstdc++                           s390x   14.1.1-4.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  987 k
 libtasn1                            s390x   4.19.0-6.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   78 k
 libtirpc                            s390x   1.3.4-1.rc3.fc41           http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   95 k
 libtool-ltdl                        s390x   2.4.7-10.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   37 k
 libunistring                        s390x   1.1-7.fc41                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  560 k
 libutempter                         s390x   1.2.1-13.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   26 k
 libuuid                             s390x   2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   29 k
 libverto                            s390x   0.3.2-8.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   21 k
 libxcrypt                           s390x   4.4.36-5.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  124 k
 libxml2                             s390x   2.12.7-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  706 k
 libzstd                             s390x   1.5.6-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  345 k
 lua-libs                            s390x   5.4.6-5.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  143 k
 lua-srpm-macros                     noarch  1-13.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  8.7 k
 lz4-libs                            s390x   1.9.4-6.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   83 k
 mpfr                                s390x   4.2.1-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  298 k
 ncurses-base                        noarch  6.4-12.20240127.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   64 k
 ncurses-libs                        s390x   6.4-12.20240127.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  363 k
 ocaml-srpm-macros                   noarch  10-1.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  9.0 k
 openblas-srpm-macros                noarch  2-17.fc41                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  7.7 k
 openldap                            s390x   2.6.8-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  263 k
 openssl-libs                        s390x   1:3.2.1-6.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  2.0 M
 p11-kit                             s390x   0.25.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  519 k
 p11-kit-trust                       s390x   0.25.3-4.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  144 k
 package-notes-srpm-macros           noarch  0.5-11.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  9.9 k
 pam                                 s390x   1.6.1-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  525 k
 pam-libs                            s390x   1.6.1-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   58 k
 pcre2                               s390x   10.43-2.fc41.1             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  262 k
 pcre2-syntax                        noarch  10.43-2.fc41.1             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  149 k
 perl-srpm-macros                    noarch  1-53.fc40                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  8.4 k
 pkgconf                             s390x   2.1.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   44 k
 pkgconf-m4                          noarch  2.1.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   14 k
 pkgconf-pkg-config                  s390x   2.1.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  9.8 k
 popt                                s390x   1.19-6.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   62 k
 publicsuffix-list-dafsa             noarch  20240107-3.fc40            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   58 k
 pyproject-srpm-macros               noarch  1.12.0-1.fc40              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   14 k
 python-srpm-macros                  noarch  3.12-9.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   24 k
 qt5-srpm-macros                     noarch  5.15.13-1.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  8.5 k
 qt6-srpm-macros                     noarch  6.7.1-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  8.9 k
 readline                            s390x   8.2-8.fc40                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  230 k
 rpm                                 s390x   4.19.91-4.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  521 k
 rpm-build-libs                      s390x   4.19.91-4.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  100 k
 rpm-libs                            s390x   4.19.91-4.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  323 k
 rpm-sequoia                         s390x   1.6.0-3.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  971 k
 rust-srpm-macros                    noarch  26.3-1.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   13 k
 setup                               noarch  2.15.0-3.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  148 k
 sqlite-libs                         s390x   3.45.3-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  760 k
 systemd-libs                        s390x   256~rc3-3.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  743 k
 util-linux-core                     s390x   2.40.1-1.fc41              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  527 k
 xxhash-libs                         s390x   0.8.2-2.fc40               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   36 k
 xz-libs                             s390x   1:5.4.6-3.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  116 k
 zig-srpm-macros                     noarch  1-2.fc40                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  8.0 k
 zip                                 s390x   3.0-40.fc40                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  283 k
 zlib-ng-compat                      s390x   2.1.6-4.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   66 k
 zstd                                s390x   1.5.6-1.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  516 k
Installing Groups:
 Buildsystem building group                                                                                                                 

Transaction Summary
============================================================================================================================================
Install  155 Packages

Total size: 54 M
Installed size: 185 M
Downloading Packages:
[SKIPPED] gdb-minimal-14.2-9.fc41.s390x.rpm: Already downloaded                
[SKIPPED] add-determinism-nopython-0.2.0-9.fc41.s390x.rpm: Already downloaded  
[SKIPPED] alternatives-1.27-1.fc41.s390x.rpm: Already downloaded               
[SKIPPED] ansible-srpm-macros-1-15.fc41.noarch.rpm: Already downloaded         
[SKIPPED] audit-libs-4.0.1-2.fc41.s390x.rpm: Already downloaded                
[SKIPPED] authselect-1.5.0-5.fc41.s390x.rpm: Already downloaded                
[SKIPPED] authselect-libs-1.5.0-5.fc41.s390x.rpm: Already downloaded           
[SKIPPED] basesystem-11-20.fc40.noarch.rpm: Already downloaded                 
[SKIPPED] bash-5.2.26-3.fc40.s390x.rpm: Already downloaded                     
[SKIPPED] binutils-2.42.50-11.fc41.s390x.rpm: Already downloaded               
[SKIPPED] binutils-gold-2.42.50-11.fc41.s390x.rpm: Already downloaded          
[SKIPPED] build-reproducibility-srpm-macros-0.2.0-9.fc41.noarch.rpm: Already downloaded
[SKIPPED] bzip2-1.0.8-18.fc40.s390x.rpm: Already downloaded                    
[SKIPPED] bzip2-libs-1.0.8-18.fc40.s390x.rpm: Already downloaded               
[SKIPPED] ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch.rpm: Already downloaded
[SKIPPED] coreutils-9.5-1.fc41.s390x.rpm: Already downloaded                   
[SKIPPED] coreutils-common-9.5-1.fc41.s390x.rpm: Already downloaded            
[SKIPPED] cpio-2.15-1.fc40.s390x.rpm: Already downloaded                       
[SKIPPED] cracklib-2.9.11-5.fc40.s390x.rpm: Already downloaded                 
[SKIPPED] crypto-policies-20240521-1.gitf71d135.fc41.noarch.rpm: Already downloaded
[SKIPPED] curl-8.8.0-1.fc41.s390x.rpm: Already downloaded                      
[SKIPPED] cyrus-sasl-lib-2.1.28-22.fc41.s390x.rpm: Already downloaded          
[SKIPPED] debugedit-5.0-16.fc41.s390x.rpm: Already downloaded                  
[SKIPPED] diffutils-3.10-5.fc40.s390x.rpm: Already downloaded                  
[SKIPPED] dwz-0.15-6.fc40.s390x.rpm: Already downloaded                        
[SKIPPED] ed-1.20.2-1.fc41.s390x.rpm: Already downloaded                       
[SKIPPED] efi-srpm-macros-5-11.fc40.noarch.rpm: Already downloaded             
[SKIPPED] elfutils-0.191-7.fc41.s390x.rpm: Already downloaded                  
[SKIPPED] elfutils-debuginfod-client-0.191-7.fc41.s390x.rpm: Already downloaded
[SKIPPED] elfutils-default-yama-scope-0.191-7.fc41.noarch.rpm: Already downloaded
[SKIPPED] elfutils-libelf-0.191-7.fc41.s390x.rpm: Already downloaded           
[SKIPPED] elfutils-libs-0.191-7.fc41.s390x.rpm: Already downloaded             
[SKIPPED] fedora-gpg-keys-41-0.2.noarch.rpm: Already downloaded                
[SKIPPED] fedora-release-41-0.13.noarch.rpm: Already downloaded                
[SKIPPED] fedora-release-common-41-0.13.noarch.rpm: Already downloaded         
[SKIPPED] fedora-release-identity-basic-41-0.13.noarch.rpm: Already downloaded 
[SKIPPED] fedora-repos-41-0.2.noarch.rpm: Already downloaded                   
[SKIPPED] fedora-repos-rawhide-41-0.2.noarch.rpm: Already downloaded           
[SKIPPED] file-5.45-5.fc41.s390x.rpm: Already downloaded                       
[SKIPPED] file-libs-5.45-5.fc41.s390x.rpm: Already downloaded                  
[SKIPPED] filesystem-3.18-9.fc41.s390x.rpm: Already downloaded                 
[SKIPPED] findutils-4.9.0-8.fc40.s390x.rpm: Already downloaded                 
[SKIPPED] fonts-srpm-macros-2.0.5-14.fc40.noarch.rpm: Already downloaded       
[SKIPPED] forge-srpm-macros-0.3.1-1.fc41.noarch.rpm: Already downloaded        
[SKIPPED] fpc-srpm-macros-1.3-12.fc40.noarch.rpm: Already downloaded           
[SKIPPED] gawk-5.3.0-3.fc40.s390x.rpm: Already downloaded                      
[SKIPPED] gdbm-1.23-6.fc40.s390x.rpm: Already downloaded                       
[SKIPPED] gdbm-libs-1.23-6.fc40.s390x.rpm: Already downloaded                  
[SKIPPED] ghc-srpm-macros-1.9.1-1.fc41.noarch.rpm: Already downloaded          
[SKIPPED] glibc-2.39.9000-18.fc41.s390x.rpm: Already downloaded                
[SKIPPED] glibc-common-2.39.9000-18.fc41.s390x.rpm: Already downloaded         
[SKIPPED] glibc-gconv-extra-2.39.9000-18.fc41.s390x.rpm: Already downloaded    
[SKIPPED] glibc-minimal-langpack-2.39.9000-18.fc41.s390x.rpm: Already downloaded
[SKIPPED] gmp-6.3.0-1.fc41.s390x.rpm: Already downloaded                       
[SKIPPED] gnat-srpm-macros-6-5.fc40.noarch.rpm: Already downloaded             
[SKIPPED] go-srpm-macros-3.6.0-1.fc41.noarch.rpm: Already downloaded           
[SKIPPED] grep-3.11-8.fc41.s390x.rpm: Already downloaded                       
[SKIPPED] gzip-1.13-1.fc40.s390x.rpm: Already downloaded                       
[SKIPPED] info-7.1-2.fc40.s390x.rpm: Already downloaded                        
[SKIPPED] jansson-2.13.1-9.fc40.s390x.rpm: Already downloaded                  
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Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
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warning: /etc/hosts created as /etc/hosts.rpmnew

  Running scriptlet: setup-2.15.0-3.fc41.noarch                           9/155 
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  Installing       : info-7.1-2.fc40.s390x                              155/155 
  Running scriptlet: filesystem-3.18-9.fc41.s390x                       155/155 
  Running scriptlet: ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch   155/155 
  Running scriptlet: authselect-libs-1.5.0-5.fc41.s390x                 155/155 
  Running scriptlet: rpm-4.19.91-4.fc41.s390x                           155/155 
  Running scriptlet: info-7.1-2.fc40.s390x                              155/155 

Installed:
  add-determinism-nopython-0.2.0-9.fc41.s390x                                   
  alternatives-1.27-1.fc41.s390x                                                
  ansible-srpm-macros-1-15.fc41.noarch                                          
  audit-libs-4.0.1-2.fc41.s390x                                                 
  authselect-1.5.0-5.fc41.s390x                                                 
  authselect-libs-1.5.0-5.fc41.s390x                                            
  basesystem-11-20.fc40.noarch                                                  
  bash-5.2.26-3.fc40.s390x                                                      
  binutils-2.42.50-11.fc41.s390x                                                
  binutils-gold-2.42.50-11.fc41.s390x                                           
  build-reproducibility-srpm-macros-0.2.0-9.fc41.noarch                         
  bzip2-1.0.8-18.fc40.s390x                                                     
  bzip2-libs-1.0.8-18.fc40.s390x                                                
  ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch                              
  coreutils-9.5-1.fc41.s390x                                                    
  coreutils-common-9.5-1.fc41.s390x                                             
  cpio-2.15-1.fc40.s390x                                                        
  cracklib-2.9.11-5.fc40.s390x                                                  
  crypto-policies-20240521-1.gitf71d135.fc41.noarch                             
  curl-8.8.0-1.fc41.s390x                                                       
  cyrus-sasl-lib-2.1.28-22.fc41.s390x                                           
  debugedit-5.0-16.fc41.s390x                                                   
  diffutils-3.10-5.fc40.s390x                                                   
  dwz-0.15-6.fc40.s390x                                                         
  ed-1.20.2-1.fc41.s390x                                                        
  efi-srpm-macros-5-11.fc40.noarch                                              
  elfutils-0.191-7.fc41.s390x                                                   
  elfutils-debuginfod-client-0.191-7.fc41.s390x                                 
  elfutils-default-yama-scope-0.191-7.fc41.noarch                               
  elfutils-libelf-0.191-7.fc41.s390x                                            
  elfutils-libs-0.191-7.fc41.s390x                                              
  fedora-gpg-keys-41-0.2.noarch                                                 
  fedora-release-41-0.13.noarch                                                 
  fedora-release-common-41-0.13.noarch                                          
  fedora-release-identity-basic-41-0.13.noarch                                  
  fedora-repos-41-0.2.noarch                                                    
  fedora-repos-rawhide-41-0.2.noarch                                            
  file-5.45-5.fc41.s390x                                                        
  file-libs-5.45-5.fc41.s390x                                                   
  filesystem-3.18-9.fc41.s390x                                                  
  findutils-1:4.9.0-8.fc40.s390x                                                
  fonts-srpm-macros-1:2.0.5-14.fc40.noarch                                      
  forge-srpm-macros-0.3.1-1.fc41.noarch                                         
  fpc-srpm-macros-1.3-12.fc40.noarch                                            
  gawk-5.3.0-3.fc40.s390x                                                       
  gdb-minimal-14.2-9.fc41.s390x                                                 
  gdbm-1:1.23-6.fc40.s390x                                                      
  gdbm-libs-1:1.23-6.fc40.s390x                                                 
  ghc-srpm-macros-1.9.1-1.fc41.noarch                                           
  glibc-2.39.9000-18.fc41.s390x                                                 
  glibc-common-2.39.9000-18.fc41.s390x                                          
  glibc-gconv-extra-2.39.9000-18.fc41.s390x                                     
  glibc-minimal-langpack-2.39.9000-18.fc41.s390x                                
  gmp-1:6.3.0-1.fc41.s390x                                                      
  gnat-srpm-macros-6-5.fc40.noarch                                              
  go-srpm-macros-3.6.0-1.fc41.noarch                                            
  grep-3.11-8.fc41.s390x                                                        
  gzip-1.13-1.fc40.s390x                                                        
  info-7.1-2.fc40.s390x                                                         
  jansson-2.13.1-9.fc40.s390x                                                   
  kernel-srpm-macros-1.0-23.fc41.noarch                                         
  keyutils-libs-1.6.3-3.fc40.s390x                                              
  krb5-libs-1.21.2-5.fc40.s390x                                                 
  libacl-2.3.2-1.fc40.s390x                                                     
  libarchive-3.7.4-1.fc41.s390x                                                 
  libattr-2.5.2-3.fc40.s390x                                                    
  libblkid-2.40.1-1.fc41.s390x                                                  
  libbrotli-1.1.0-3.fc40.s390x                                                  
  libcap-2.70-1.fc41.s390x                                                      
  libcap-ng-0.8.5-1.fc41.s390x                                                  
  libcom_err-1.47.0-5.fc40.s390x                                                
  libcurl-8.8.0-1.fc41.s390x                                                    
  libeconf-0.6.2-2.fc41.s390x                                                   
  libevent-2.1.12-13.fc41.s390x                                                 
  libfdisk-2.40.1-1.fc41.s390x                                                  
  libffi-3.4.6-1.fc41.s390x                                                     
  libgcc-14.1.1-4.fc41.s390x                                                    
  libgomp-14.1.1-4.fc41.s390x                                                   
  libidn2-2.3.7-1.fc40.s390x                                                    
  libmount-2.40.1-1.fc41.s390x                                                  
  libnghttp2-1.62.0-1.fc41.s390x                                                
  libnsl2-2.0.1-1.fc40.s390x                                                    
  libpkgconf-2.1.1-1.fc41.s390x                                                 
  libpsl-0.21.5-3.fc40.s390x                                                    
  libpwquality-1.4.5-9.fc40.s390x                                               
  libselinux-3.6-4.fc40.s390x                                                   
  libsemanage-3.6-3.fc40.s390x                                                  
  libsepol-3.6-3.fc40.s390x                                                     
  libsmartcols-2.40.1-1.fc41.s390x                                              
  libssh-0.10.6-6.fc41.s390x                                                    
  libssh-config-0.10.6-6.fc41.noarch                                            
  libstdc++-14.1.1-4.fc41.s390x                                                 
  libtasn1-4.19.0-6.fc40.s390x                                                  
  libtirpc-1.3.4-1.rc3.fc41.s390x                                               
  libtool-ltdl-2.4.7-10.fc40.s390x                                              
  libunistring-1.1-7.fc41.s390x                                                 
  libutempter-1.2.1-13.fc40.s390x                                               
  libuuid-2.40.1-1.fc41.s390x                                                   
  libverto-0.3.2-8.fc40.s390x                                                   
  libxcrypt-4.4.36-5.fc40.s390x                                                 
  libxml2-2.12.7-1.fc41.s390x                                                   
  libzstd-1.5.6-1.fc41.s390x                                                    
  lua-libs-5.4.6-5.fc40.s390x                                                   
  lua-srpm-macros-1-13.fc40.noarch                                              
  lz4-libs-1.9.4-6.fc40.s390x                                                   
  mpfr-4.2.1-4.fc41.s390x                                                       
  ncurses-base-6.4-12.20240127.fc40.noarch                                      
  ncurses-libs-6.4-12.20240127.fc40.s390x                                       
  ocaml-srpm-macros-10-1.fc41.noarch                                            
  openblas-srpm-macros-2-17.fc41.noarch                                         
  openldap-2.6.8-1.fc41.s390x                                                   
  openssl-libs-1:3.2.1-6.fc41.s390x                                             
  p11-kit-0.25.3-4.fc40.s390x                                                   
  p11-kit-trust-0.25.3-4.fc40.s390x                                             
  package-notes-srpm-macros-0.5-11.fc40.noarch                                  
  pam-1.6.1-3.fc41.s390x                                                        
  pam-libs-1.6.1-3.fc41.s390x                                                   
  patch-2.7.6-24.fc40.s390x                                                     
  pcre2-10.43-2.fc41.1.s390x                                                    
  pcre2-syntax-10.43-2.fc41.1.noarch                                            
  perl-srpm-macros-1-53.fc40.noarch                                             
  pkgconf-2.1.1-1.fc41.s390x                                                    
  pkgconf-m4-2.1.1-1.fc41.noarch                                                
  pkgconf-pkg-config-2.1.1-1.fc41.s390x                                         
  popt-1.19-6.fc40.s390x                                                        
  publicsuffix-list-dafsa-20240107-3.fc40.noarch                                
  pyproject-srpm-macros-1.12.0-1.fc40.noarch                                    
  python-srpm-macros-3.12-9.fc41.noarch                                         
  qt5-srpm-macros-5.15.13-1.fc41.noarch                                         
  qt6-srpm-macros-6.7.1-1.fc41.noarch                                           
  readline-8.2-8.fc40.s390x                                                     
  redhat-rpm-config-291-1.fc41.noarch                                           
  rpm-4.19.91-4.fc41.s390x                                                      
  rpm-build-4.19.91-4.fc41.s390x                                                
  rpm-build-libs-4.19.91-4.fc41.s390x                                           
  rpm-libs-4.19.91-4.fc41.s390x                                                 
  rpm-sequoia-1.6.0-3.fc41.s390x                                                
  rust-srpm-macros-26.3-1.fc41.noarch                                           
  sed-4.9-1.fc40.s390x                                                          
  setup-2.15.0-3.fc41.noarch                                                    
  shadow-utils-2:4.15.1-5.fc41.s390x                                            
  sqlite-libs-3.45.3-1.fc41.s390x                                               
  systemd-libs-256~rc3-3.fc41.s390x                                             
  tar-2:1.35-3.fc40.s390x                                                       
  unzip-6.0-63.fc40.s390x                                                       
  util-linux-2.40.1-1.fc41.s390x                                                
  util-linux-core-2.40.1-1.fc41.s390x                                           
  which-2.21-41.fc40.s390x                                                      
  xxhash-libs-0.8.2-2.fc40.s390x                                                
  xz-1:5.4.6-3.fc41.s390x                                                       
  xz-libs-1:5.4.6-3.fc41.s390x                                                  
  zig-srpm-macros-1-2.fc40.noarch                                               
  zip-3.0-40.fc40.s390x                                                         
  zlib-ng-compat-2.1.6-4.fc41.s390x                                             
  zstd-1.5.6-1.fc41.s390x                                                       

Complete!
Finish: installing minimal buildroot with dnf
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: add-determinism-nopython-0.2.0-9.fc41.s390x
alternatives-1.27-1.fc41.s390x
ansible-srpm-macros-1-15.fc41.noarch
audit-libs-4.0.1-2.fc41.s390x
authselect-1.5.0-5.fc41.s390x
authselect-libs-1.5.0-5.fc41.s390x
basesystem-11-20.fc40.noarch
bash-5.2.26-3.fc40.s390x
binutils-2.42.50-11.fc41.s390x
binutils-gold-2.42.50-11.fc41.s390x
build-reproducibility-srpm-macros-0.2.0-9.fc41.noarch
bzip2-1.0.8-18.fc40.s390x
bzip2-libs-1.0.8-18.fc40.s390x
ca-certificates-2023.2.62_v7.0.401-6.fc40.noarch
coreutils-9.5-1.fc41.s390x
coreutils-common-9.5-1.fc41.s390x
cpio-2.15-1.fc40.s390x
cracklib-2.9.11-5.fc40.s390x
crypto-policies-20240521-1.gitf71d135.fc41.noarch
curl-8.8.0-1.fc41.s390x
cyrus-sasl-lib-2.1.28-22.fc41.s390x
debugedit-5.0-16.fc41.s390x
diffutils-3.10-5.fc40.s390x
dwz-0.15-6.fc40.s390x
ed-1.20.2-1.fc41.s390x
efi-srpm-macros-5-11.fc40.noarch
elfutils-0.191-7.fc41.s390x
elfutils-debuginfod-client-0.191-7.fc41.s390x
elfutils-default-yama-scope-0.191-7.fc41.noarch
elfutils-libelf-0.191-7.fc41.s390x
elfutils-libs-0.191-7.fc41.s390x
fedora-gpg-keys-41-0.2.noarch
fedora-release-41-0.13.noarch
fedora-release-common-41-0.13.noarch
fedora-release-identity-basic-41-0.13.noarch
fedora-repos-41-0.2.noarch
fedora-repos-rawhide-41-0.2.noarch
file-5.45-5.fc41.s390x
file-libs-5.45-5.fc41.s390x
filesystem-3.18-9.fc41.s390x
findutils-4.9.0-8.fc40.s390x
fonts-srpm-macros-2.0.5-14.fc40.noarch
forge-srpm-macros-0.3.1-1.fc41.noarch
fpc-srpm-macros-1.3-12.fc40.noarch
gawk-5.3.0-3.fc40.s390x
gdb-minimal-14.2-9.fc41.s390x
gdbm-1.23-6.fc40.s390x
gdbm-libs-1.23-6.fc40.s390x
ghc-srpm-macros-1.9.1-1.fc41.noarch
glibc-2.39.9000-18.fc41.s390x
glibc-common-2.39.9000-18.fc41.s390x
glibc-gconv-extra-2.39.9000-18.fc41.s390x
glibc-minimal-langpack-2.39.9000-18.fc41.s390x
gmp-6.3.0-1.fc41.s390x
gnat-srpm-macros-6-5.fc40.noarch
go-srpm-macros-3.6.0-1.fc41.noarch
grep-3.11-8.fc41.s390x
gzip-1.13-1.fc40.s390x
info-7.1-2.fc40.s390x
jansson-2.13.1-9.fc40.s390x
kernel-srpm-macros-1.0-23.fc41.noarch
keyutils-libs-1.6.3-3.fc40.s390x
krb5-libs-1.21.2-5.fc40.s390x
libacl-2.3.2-1.fc40.s390x
libarchive-3.7.4-1.fc41.s390x
libattr-2.5.2-3.fc40.s390x
libblkid-2.40.1-1.fc41.s390x
libbrotli-1.1.0-3.fc40.s390x
libcap-2.70-1.fc41.s390x
libcap-ng-0.8.5-1.fc41.s390x
libcom_err-1.47.0-5.fc40.s390x
libcurl-8.8.0-1.fc41.s390x
libeconf-0.6.2-2.fc41.s390x
libevent-2.1.12-13.fc41.s390x
libfdisk-2.40.1-1.fc41.s390x
libffi-3.4.6-1.fc41.s390x
libgcc-14.1.1-4.fc41.s390x
libgomp-14.1.1-4.fc41.s390x
libidn2-2.3.7-1.fc40.s390x
libmount-2.40.1-1.fc41.s390x
libnghttp2-1.62.0-1.fc41.s390x
libnsl2-2.0.1-1.fc40.s390x
libpkgconf-2.1.1-1.fc41.s390x
libpsl-0.21.5-3.fc40.s390x
libpwquality-1.4.5-9.fc40.s390x
libselinux-3.6-4.fc40.s390x
libsemanage-3.6-3.fc40.s390x
libsepol-3.6-3.fc40.s390x
libsmartcols-2.40.1-1.fc41.s390x
libssh-0.10.6-6.fc41.s390x
libssh-config-0.10.6-6.fc41.noarch
libstdc++-14.1.1-4.fc41.s390x
libtasn1-4.19.0-6.fc40.s390x
libtirpc-1.3.4-1.rc3.fc41.s390x
libtool-ltdl-2.4.7-10.fc40.s390x
libunistring-1.1-7.fc41.s390x
libutempter-1.2.1-13.fc40.s390x
libuuid-2.40.1-1.fc41.s390x
libverto-0.3.2-8.fc40.s390x
libxcrypt-4.4.36-5.fc40.s390x
libxml2-2.12.7-1.fc41.s390x
libzstd-1.5.6-1.fc41.s390x
lua-libs-5.4.6-5.fc40.s390x
lua-srpm-macros-1-13.fc40.noarch
lz4-libs-1.9.4-6.fc40.s390x
mpfr-4.2.1-4.fc41.s390x
ncurses-base-6.4-12.20240127.fc40.noarch
ncurses-libs-6.4-12.20240127.fc40.s390x
ocaml-srpm-macros-10-1.fc41.noarch
openblas-srpm-macros-2-17.fc41.noarch
openldap-2.6.8-1.fc41.s390x
openssl-libs-3.2.1-6.fc41.s390x
p11-kit-0.25.3-4.fc40.s390x
p11-kit-trust-0.25.3-4.fc40.s390x
package-notes-srpm-macros-0.5-11.fc40.noarch
pam-1.6.1-3.fc41.s390x
pam-libs-1.6.1-3.fc41.s390x
patch-2.7.6-24.fc40.s390x
pcre2-10.43-2.fc41.1.s390x
pcre2-syntax-10.43-2.fc41.1.noarch
perl-srpm-macros-1-53.fc40.noarch
pkgconf-2.1.1-1.fc41.s390x
pkgconf-m4-2.1.1-1.fc41.noarch
pkgconf-pkg-config-2.1.1-1.fc41.s390x
popt-1.19-6.fc40.s390x
publicsuffix-list-dafsa-20240107-3.fc40.noarch
pyproject-srpm-macros-1.12.0-1.fc40.noarch
python-srpm-macros-3.12-9.fc41.noarch
qt5-srpm-macros-5.15.13-1.fc41.noarch
qt6-srpm-macros-6.7.1-1.fc41.noarch
readline-8.2-8.fc40.s390x
redhat-rpm-config-291-1.fc41.noarch
rpm-4.19.91-4.fc41.s390x
rpm-build-4.19.91-4.fc41.s390x
rpm-build-libs-4.19.91-4.fc41.s390x
rpm-libs-4.19.91-4.fc41.s390x
rpm-sequoia-1.6.0-3.fc41.s390x
rust-srpm-macros-26.3-1.fc41.noarch
sed-4.9-1.fc40.s390x
setup-2.15.0-3.fc41.noarch
shadow-utils-4.15.1-5.fc41.s390x
sqlite-libs-3.45.3-1.fc41.s390x
systemd-libs-256~rc3-3.fc41.s390x
tar-1.35-3.fc40.s390x
unzip-6.0-63.fc40.s390x
util-linux-2.40.1-1.fc41.s390x
util-linux-core-2.40.1-1.fc41.s390x
which-2.21-41.fc40.s390x
xxhash-libs-0.8.2-2.fc40.s390x
xz-5.4.6-3.fc41.s390x
xz-libs-5.4.6-3.fc41.s390x
zig-srpm-macros-1-2.fc40.noarch
zip-3.0-40.fc40.s390x
zlib-ng-compat-2.1.6-4.fc41.s390x
zstd-1.5.6-1.fc41.s390x
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1706140800
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-19.fc41.src.rpm
Finish: rpmbuild -bs
cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-39-s390x-1717106068.170626/root/var/log’: No such file or directory
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-39-s390x-1717106068.170626/root/var/log/dnf.log
/var/lib/mock/fedora-39-s390x-1717106068.170626/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-39-s390x-1717106068.170626/root/var/log/dnf.rpm.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-dgrtujgj/mmseq/mmseq.spec) Config(child) 2 minutes 43 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-19.fc41.src.rpm)  Config(fedora-39-s390x)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-39-s390x-bootstrap-1717106068.170626/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-39-s390x-bootstrap-1717106068.170626/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-39-s390x-1717106068.170626/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.1.1-1.fc39.s390x
  rpm-sequoia-1.6.0-1.fc39.s390x
  python3-dnf-4.20.0-1.fc41.noarch
  python3-dnf-plugins-core-4.7.0-1.fc41.noarch
  dnf5-5.2.2.0-1.fc41.s390x
Finish: chroot init
Start: build phase for mmseq-1.0.11-19.fc41.src.rpm
Start: build setup for mmseq-1.0.11-19.fc41.src.rpm
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1706140800
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-19.fc41.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  28 kB/s | 1.5 kB     00:00    
Copr repository                                 3.2 MB/s |  16 MB     00:05    
Additional repo http_kojipkgs_fedoraproject_org 108 kB/s | 3.8 kB     00:00    
fedora                                           23 kB/s | 3.8 kB     00:00    
updates                                          13 kB/s | 4.8 kB     00:00    
Dependencies resolved.
================================================================================================================================
 Package                       Arch    Version              Repository                                                      Size
================================================================================================================================
Installing:
 armadillo-devel               s390x   12.8.1-1.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  2.0 M
 boost-devel                   s390x   1.83.0-5.fc41        copr_base                                                       12 M
 flexiblas-devel               s390x   3.4.4-1.fc41         copr_base                                                      112 k
 gcc-c++                       s390x   14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   12 M
 gsl-devel                     s390x   2.7.1-8.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  609 k
 htslib-devel                  s390x   1.15.1-5.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   99 k
 make                          s390x   1:4.4.1-6.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  601 k
 perl-generators               noarch  1.16-5.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   16 k
 zlib-ng-compat-devel          s390x   2.1.6-4.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   36 k
Installing dependencies:
 SuperLU                       s390x   6.0.1-5.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  235 k
 SuperLU-devel                 s390x   6.0.1-5.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   27 k
 add-determinism               s390x   0.2.0-9.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.0 M
 annobin-docs                  noarch  12.54-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   90 k
 annobin-plugin-gcc            s390x   12.54-2.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  964 k
 armadillo                     s390x   12.8.1-1.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   37 k
 arpack                        s390x   3.9.1-3.fc40         copr_base                                                      224 k
 arpack-devel                  s390x   3.9.1-3.fc40         copr_base                                                       22 k
 autoconf                      noarch  2.72-2.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  817 k
 automake                      noarch  1.16.5-16.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  676 k
 boost                         s390x   1.83.0-5.fc41        copr_base                                                       14 k
 boost-atomic                  s390x   1.83.0-5.fc41        copr_base                                                       19 k
 boost-chrono                  s390x   1.83.0-5.fc41        copr_base                                                       25 k
 boost-container               s390x   1.83.0-5.fc41        copr_base                                                       41 k
 boost-context                 s390x   1.83.0-5.fc41        copr_base                                                       16 k
 boost-contract                s390x   1.83.0-5.fc41        copr_base                                                       45 k
 boost-coroutine               s390x   1.83.0-5.fc41        copr_base                                                       20 k
 boost-date-time               s390x   1.83.0-5.fc41        copr_base                                                       15 k
 boost-fiber                   s390x   1.83.0-5.fc41        copr_base                                                       42 k
 boost-filesystem              s390x   1.83.0-5.fc41        copr_base                                                       68 k
 boost-graph                   s390x   1.83.0-5.fc41        copr_base                                                      158 k
 boost-iostreams               s390x   1.83.0-5.fc41        copr_base                                                       40 k
 boost-json                    s390x   1.83.0-5.fc41        copr_base                                                      155 k
 boost-locale                  s390x   1.83.0-5.fc41        copr_base                                                      217 k
 boost-log                     s390x   1.83.0-5.fc41        copr_base                                                      499 k
 boost-math                    s390x   1.83.0-5.fc41        copr_base                                                      241 k
 boost-nowide                  s390x   1.83.0-5.fc41        copr_base                                                       20 k
 boost-numpy3                  s390x   1.83.0-5.fc41        copr_base                                                       29 k
 boost-program-options         s390x   1.83.0-5.fc41        copr_base                                                      111 k
 boost-python3                 s390x   1.83.0-5.fc41        copr_base                                                       94 k
 boost-random                  s390x   1.83.0-5.fc41        copr_base                                                       24 k
 boost-regex                   s390x   1.83.0-5.fc41        copr_base                                                      123 k
 boost-serialization           s390x   1.83.0-5.fc41        copr_base                                                      137 k
 boost-stacktrace              s390x   1.83.0-5.fc41        copr_base                                                       30 k
 boost-system                  s390x   1.83.0-5.fc41        copr_base                                                       15 k
 boost-test                    s390x   1.83.0-5.fc41        copr_base                                                      249 k
 boost-thread                  s390x   1.83.0-5.fc41        copr_base                                                       62 k
 boost-timer                   s390x   1.83.0-5.fc41        copr_base                                                       21 k
 boost-type_erasure            s390x   1.83.0-5.fc41        copr_base                                                       33 k
 boost-wave                    s390x   1.83.0-5.fc41        copr_base                                                      226 k
 cmake-filesystem              s390x   3.28.3-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   18 k
 cpp                           s390x   14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  9.6 M
 emacs-filesystem              noarch  1:30.0-2.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  7.1 k
 expat                         s390x   2.6.2-1.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  117 k
 flexiblas                     s390x   3.4.4-1.fc41         copr_base                                                       26 k
 flexiblas-netlib              s390x   3.4.4-1.fc41         copr_base                                                      3.8 M
 flexiblas-netlib64            s390x   3.4.4-1.fc41         copr_base                                                      3.7 M
 flexiblas-openblas-openmp     s390x   3.4.4-1.fc41         copr_base                                                       18 k
 flexiblas-openblas-openmp64   s390x   3.4.4-1.fc41         copr_base                                                       18 k
 gc                            s390x   8.2.2-6.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  114 k
 gcc                           s390x   14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   31 M
 gcc-gfortran                  s390x   14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   11 M
 gcc-plugin-annobin            s390x   14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   50 k
 glibc-devel                   s390x   2.39.9000-18.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  133 k
 glibc-headers-s390            noarch  2.39.9000-18.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  534 k
 groff-base                    s390x   1.23.0-6.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.1 M
 gsl                           s390x   2.7.1-8.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.2 M
 guile30                       s390x   3.0.9-1.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  8.2 M
 hdf5                          s390x   1.12.1-15.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  2.4 M
 hdf5-devel                    s390x   1.12.1-15.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.3 M
 htslib                        s390x   1.15.1-5.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  536 k
 kernel-headers                s390x   6.10.0-0.rc1.17.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.4 M
 libaec                        s390x   1.1.2-1.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   40 k
 libaec-devel                  s390x   1.1.2-1.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   12 k
 libasan                       s390x   14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  528 k
 libatomic                     s390x   14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   37 k
 libb2                         s390x   0.98.1-11.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   27 k
 libgfortran                   s390x   14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  614 k
 libicu                        s390x   74.2-1.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   10 M
 libicu-devel                  s390x   74.2-1.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  854 k
 libmpc                        s390x   1.3.1-5.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   74 k
 libstdc++-devel               s390x   14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  2.6 M
 libubsan                      s390x   14.1.1-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  229 k
 libxcrypt-devel               s390x   4.4.36-5.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   29 k
 m4                            s390x   1.4.19-9.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  310 k
 metis                         s390x   5.1.0.3-5.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  602 k
 mpdecimal                     s390x   2.5.1-9.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  101 k
 ncurses                       s390x   6.4-12.20240127.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  424 k
 openblas                      s390x   0.3.26-4.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   39 k
 openblas-openmp               s390x   0.3.26-4.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  4.4 M
 openblas-openmp64             s390x   0.3.26-4.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  4.3 M
 perl-AutoLoader               noarch  5.74-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   21 k
 perl-B                        s390x   1.88-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  178 k
 perl-Carp                     noarch  1.54-502.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   29 k
 perl-Class-Struct             noarch  0.68-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   22 k
 perl-Data-Dumper              s390x   2.188-503.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   57 k
 perl-Digest                   noarch  1.20-502.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   25 k
 perl-Digest-MD5               s390x   2.59-3.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   36 k
 perl-DynaLoader               s390x   1.54-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   26 k
 perl-Encode                   s390x   4:3.21-505.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.7 M
 perl-Errno                    s390x   1.37-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   15 k
 perl-Exporter                 noarch  5.78-3.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   31 k
 perl-Fcntl                    s390x   1.15-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   21 k
 perl-Fedora-VSP               noarch  0.001-34.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   23 k
 perl-File-Basename            noarch  2.86-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   17 k
 perl-File-Compare             noarch  1.100.700-507.fc41   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   13 k
 perl-File-Copy                noarch  2.41-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   20 k
 perl-File-Find                noarch  1.43-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   25 k
 perl-File-Path                noarch  2.18-503.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   35 k
 perl-File-Temp                noarch  1:0.231.100-503.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   59 k
 perl-File-stat                noarch  1.13-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   17 k
 perl-FileHandle               noarch  2.05-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   16 k
 perl-Getopt-Long              noarch  1:2.57-4.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   63 k
 perl-Getopt-Std               noarch  1.13-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   16 k
 perl-HTTP-Tiny                noarch  0.088-5.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   56 k
 perl-IO                       s390x   1.52-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   78 k
 perl-IO-Socket-IP             noarch  0.42-2.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   42 k
 perl-IO-Socket-SSL            noarch  2.085-1.fc40         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  225 k
 perl-IPC-Open3                noarch  1.22-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   22 k
 perl-MIME-Base64              s390x   3.16-503.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   30 k
 perl-Mozilla-CA               noarch  20240313-1.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   14 k
 perl-Net-SSLeay               s390x   1.94-3.fc40          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  370 k
 perl-POSIX                    s390x   2.13-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   98 k
 perl-PathTools                s390x   3.89-502.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   82 k
 perl-Pod-Escapes              noarch  1:1.07-503.fc40      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   20 k
 perl-Pod-Perldoc              noarch  3.28.01-503.fc40     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   79 k
 perl-Pod-Simple               noarch  1:3.45-6.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  209 k
 perl-Pod-Usage                noarch  4:2.03-504.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   40 k
 perl-Scalar-List-Utils        s390x   5:1.63-503.fc40      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   74 k
 perl-SelectSaver              noarch  1.02-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   12 k
 perl-Socket                   s390x   4:2.038-1.fc41       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   55 k
 perl-Storable                 s390x   1:3.32-502.fc40      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   99 k
 perl-Symbol                   noarch  1.09-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   14 k
 perl-Term-ANSIColor           noarch  5.01-504.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   48 k
 perl-Term-Cap                 noarch  1.18-503.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   22 k
 perl-Text-ParseWords          noarch  3.31-502.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   16 k
 perl-Text-Tabs+Wrap           noarch  2024.001-1.fc41      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   22 k
 perl-Thread-Queue             noarch  3.14-503.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   21 k
 perl-Time-Local               noarch  2:1.350-5.fc40       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   34 k
 perl-URI                      noarch  5.28-1.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  120 k
 perl-base                     noarch  2.27-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   16 k
 perl-constant                 noarch  1.33-503.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   23 k
 perl-if                       noarch  0.61.000-507.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   14 k
 perl-interpreter              s390x   4:5.38.2-507.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   72 k
 perl-libnet                   noarch  3.15-503.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  122 k
 perl-libs                     s390x   4:5.38.2-507.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  2.4 M
 perl-locale                   noarch  1.10-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   14 k
 perl-macros                   noarch  4:5.38.2-507.fc41    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   12 k
 perl-mro                      s390x   1.28-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   29 k
 perl-overload                 noarch  1.37-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   46 k
 perl-overloading              noarch  0.02-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   13 k
 perl-parent                   noarch  1:0.241-502.fc40     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   15 k
 perl-podlators                noarch  1:5.01-502.fc40      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  121 k
 perl-threads                  s390x   1:2.36-503.fc40      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   58 k
 perl-threads-shared           s390x   1.68-502.fc40        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   45 k
 perl-vars                     noarch  1.05-507.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   13 k
 python-pip-wheel              noarch  24.0-2.fc41          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  1.5 M
 python3                       s390x   3.12.3-2.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   27 k
 python3-libs                  s390x   3.12.3-2.fc41        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  8.8 M
 python3-numpy                 s390x   1:1.26.4-5.fc41      copr_base                                                      6.9 M
 tzdata                        noarch  2024a-8.fc41         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  431 k

Transaction Summary
================================================================================================================================
Install  160 Packages

Total size: 160 M
Total download size: 30 M
Installed size: 651 M
Downloading Packages:
[SKIPPED] boost-1.83.0-5.fc41.s390x.rpm: Already downloaded                    
[SKIPPED] boost-atomic-1.83.0-5.fc41.s390x.rpm: Already downloaded             
[SKIPPED] boost-chrono-1.83.0-5.fc41.s390x.rpm: Already downloaded             
[SKIPPED] boost-container-1.83.0-5.fc41.s390x.rpm: Already downloaded          
[SKIPPED] boost-context-1.83.0-5.fc41.s390x.rpm: Already downloaded            
[SKIPPED] boost-contract-1.83.0-5.fc41.s390x.rpm: Already downloaded           
[SKIPPED] boost-coroutine-1.83.0-5.fc41.s390x.rpm: Already downloaded          
[SKIPPED] boost-date-time-1.83.0-5.fc41.s390x.rpm: Already downloaded          
[SKIPPED] boost-devel-1.83.0-5.fc41.s390x.rpm: Already downloaded              
[SKIPPED] boost-fiber-1.83.0-5.fc41.s390x.rpm: Already downloaded              
[SKIPPED] boost-filesystem-1.83.0-5.fc41.s390x.rpm: Already downloaded         
[SKIPPED] boost-graph-1.83.0-5.fc41.s390x.rpm: Already downloaded              
[SKIPPED] boost-iostreams-1.83.0-5.fc41.s390x.rpm: Already downloaded          
[SKIPPED] boost-json-1.83.0-5.fc41.s390x.rpm: Already downloaded               
[SKIPPED] boost-locale-1.83.0-5.fc41.s390x.rpm: Already downloaded             
[SKIPPED] boost-log-1.83.0-5.fc41.s390x.rpm: Already downloaded                
[SKIPPED] boost-math-1.83.0-5.fc41.s390x.rpm: Already downloaded               
[SKIPPED] boost-nowide-1.83.0-5.fc41.s390x.rpm: Already downloaded             
[SKIPPED] boost-numpy3-1.83.0-5.fc41.s390x.rpm: Already downloaded             
[SKIPPED] boost-program-options-1.83.0-5.fc41.s390x.rpm: Already downloaded    
[SKIPPED] boost-python3-1.83.0-5.fc41.s390x.rpm: Already downloaded            
[SKIPPED] boost-random-1.83.0-5.fc41.s390x.rpm: Already downloaded             
[SKIPPED] boost-regex-1.83.0-5.fc41.s390x.rpm: Already downloaded              
[SKIPPED] boost-serialization-1.83.0-5.fc41.s390x.rpm: Already downloaded      
[SKIPPED] boost-stacktrace-1.83.0-5.fc41.s390x.rpm: Already downloaded         
[SKIPPED] boost-system-1.83.0-5.fc41.s390x.rpm: Already downloaded             
[SKIPPED] boost-test-1.83.0-5.fc41.s390x.rpm: Already downloaded               
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(159/160): zlib-ng-compat-devel-2.1.6-4.fc41.s3 8.0 MB/s |  36 kB     00:00    
(160/160): perl-threads-shared-1.68-502.fc40.s3 7.1 MB/s |  45 kB     00:00    
--------------------------------------------------------------------------------
Total                                            98 MB/s |  30 MB     00:00     
Running transaction check
Transaction check succeeded.
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Running transaction
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  Installing       : perl-macros-4:5.38.2-507.fc41.noarch               116/160 
  Installing       : perl-Fedora-VSP-0.001-34.fc40.noarch               117/160 
  Installing       : perl-File-Compare-1.100.700-507.fc41.noarch        118/160 
  Installing       : perl-File-Copy-2.41-507.fc41.noarch                119/160 
  Installing       : perl-File-Find-1.43-507.fc41.noarch                120/160 
  Installing       : glibc-headers-s390-2.39.9000-18.fc41.noarch        121/160 
  Installing       : libxcrypt-devel-4.4.36-5.fc40.s390x                122/160 
  Installing       : glibc-devel-2.39.9000-18.fc41.s390x                123/160 
  Installing       : gc-8.2.2-6.fc40.s390x                              124/160 
  Installing       : guile30-3.0.9-1.fc41.s390x                         125/160 
  Installing       : make-1:4.4.1-6.fc40.s390x                          126/160 
  Installing       : gcc-14.1.1-4.fc41.s390x                            127/160 
  Running scriptlet: gcc-14.1.1-4.fc41.s390x                            127/160 
  Installing       : gcc-gfortran-14.1.1-4.fc41.s390x                   128/160 
  Installing       : hdf5-devel-1.12.1-15.fc40.s390x                    129/160 
  Installing       : expat-2.6.2-1.fc41.s390x                           130/160 
  Installing       : python3-3.12.3-2.fc41.s390x                        131/160 
  Installing       : python3-libs-3.12.3-2.fc41.s390x                   132/160 
  Installing       : boost-python3-1.83.0-5.fc41.s390x                  133/160 
  Installing       : python3-numpy-1:1.26.4-5.fc41.s390x                134/160 
  Installing       : boost-numpy3-1.83.0-5.fc41.s390x                   135/160 
  Installing       : emacs-filesystem-1:30.0-2.fc41.noarch              136/160 
  Installing       : autoconf-2.72-2.fc41.noarch                        137/160 
  Installing       : automake-1.16.5-16.fc40.noarch                     138/160 
  Installing       : cmake-filesystem-3.28.3-4.fc41.s390x               139/160 
  Installing       : SuperLU-devel-6.0.1-5.fc41.s390x                   140/160 
  Installing       : annobin-docs-12.54-2.fc41.noarch                   141/160 
  Installing       : boost-test-1.83.0-5.fc41.s390x                     142/160 
  Installing       : boost-stacktrace-1.83.0-5.fc41.s390x               143/160 
  Installing       : boost-serialization-1.83.0-5.fc41.s390x            144/160 
  Installing       : boost-random-1.83.0-5.fc41.s390x                   145/160 
  Installing       : boost-program-options-1.83.0-5.fc41.s390x          146/160 
  Installing       : boost-nowide-1.83.0-5.fc41.s390x                   147/160 
  Installing       : boost-math-1.83.0-5.fc41.s390x                     148/160 
  Installing       : boost-iostreams-1.83.0-5.fc41.s390x                149/160 
  Installing       : boost-contract-1.83.0-5.fc41.s390x                 150/160 
  Installing       : boost-1.83.0-5.fc41.s390x                          151/160 
  Installing       : boost-devel-1.83.0-5.fc41.s390x                    152/160 
  Installing       : annobin-plugin-gcc-12.54-2.fc41.s390x              153/160 
  Running scriptlet: annobin-plugin-gcc-12.54-2.fc41.s390x              153/160 
  Installing       : armadillo-devel-12.8.1-1.fc41.s390x                154/160 
  Installing       : gsl-devel-2.7.1-8.fc41.s390x                       155/160 
  Installing       : add-determinism-0.2.0-9.fc41.s390x                 156/160 
  Installing       : gcc-c++-14.1.1-4.fc41.s390x                        157/160 
  Installing       : gcc-plugin-annobin-14.1.1-4.fc41.s390x             158/160 
  Running scriptlet: gcc-plugin-annobin-14.1.1-4.fc41.s390x             158/160 
  Installing       : perl-generators-1.16-5.fc40.noarch                 159/160 
  Installing       : htslib-devel-1.15.1-5.fc40.s390x                   160/160 
  Running scriptlet: htslib-devel-1.15.1-5.fc40.s390x                   160/160 

Installed:
  SuperLU-6.0.1-5.fc41.s390x                                                    
  SuperLU-devel-6.0.1-5.fc41.s390x                                              
  add-determinism-0.2.0-9.fc41.s390x                                            
  annobin-docs-12.54-2.fc41.noarch                                              
  annobin-plugin-gcc-12.54-2.fc41.s390x                                         
  armadillo-12.8.1-1.fc41.s390x                                                 
  armadillo-devel-12.8.1-1.fc41.s390x                                           
  arpack-3.9.1-3.fc40.s390x                                                     
  arpack-devel-3.9.1-3.fc40.s390x                                               
  autoconf-2.72-2.fc41.noarch                                                   
  automake-1.16.5-16.fc40.noarch                                                
  boost-1.83.0-5.fc41.s390x                                                     
  boost-atomic-1.83.0-5.fc41.s390x                                              
  boost-chrono-1.83.0-5.fc41.s390x                                              
  boost-container-1.83.0-5.fc41.s390x                                           
  boost-context-1.83.0-5.fc41.s390x                                             
  boost-contract-1.83.0-5.fc41.s390x                                            
  boost-coroutine-1.83.0-5.fc41.s390x                                           
  boost-date-time-1.83.0-5.fc41.s390x                                           
  boost-devel-1.83.0-5.fc41.s390x                                               
  boost-fiber-1.83.0-5.fc41.s390x                                               
  boost-filesystem-1.83.0-5.fc41.s390x                                          
  boost-graph-1.83.0-5.fc41.s390x                                               
  boost-iostreams-1.83.0-5.fc41.s390x                                           
  boost-json-1.83.0-5.fc41.s390x                                                
  boost-locale-1.83.0-5.fc41.s390x                                              
  boost-log-1.83.0-5.fc41.s390x                                                 
  boost-math-1.83.0-5.fc41.s390x                                                
  boost-nowide-1.83.0-5.fc41.s390x                                              
  boost-numpy3-1.83.0-5.fc41.s390x                                              
  boost-program-options-1.83.0-5.fc41.s390x                                     
  boost-python3-1.83.0-5.fc41.s390x                                             
  boost-random-1.83.0-5.fc41.s390x                                              
  boost-regex-1.83.0-5.fc41.s390x                                               
  boost-serialization-1.83.0-5.fc41.s390x                                       
  boost-stacktrace-1.83.0-5.fc41.s390x                                          
  boost-system-1.83.0-5.fc41.s390x                                              
  boost-test-1.83.0-5.fc41.s390x                                                
  boost-thread-1.83.0-5.fc41.s390x                                              
  boost-timer-1.83.0-5.fc41.s390x                                               
  boost-type_erasure-1.83.0-5.fc41.s390x                                        
  boost-wave-1.83.0-5.fc41.s390x                                                
  cmake-filesystem-3.28.3-4.fc41.s390x                                          
  cpp-14.1.1-4.fc41.s390x                                                       
  emacs-filesystem-1:30.0-2.fc41.noarch                                         
  expat-2.6.2-1.fc41.s390x                                                      
  flexiblas-3.4.4-1.fc41.s390x                                                  
  flexiblas-devel-3.4.4-1.fc41.s390x                                            
  flexiblas-netlib-3.4.4-1.fc41.s390x                                           
  flexiblas-netlib64-3.4.4-1.fc41.s390x                                         
  flexiblas-openblas-openmp-3.4.4-1.fc41.s390x                                  
  flexiblas-openblas-openmp64-3.4.4-1.fc41.s390x                                
  gc-8.2.2-6.fc40.s390x                                                         
  gcc-14.1.1-4.fc41.s390x                                                       
  gcc-c++-14.1.1-4.fc41.s390x                                                   
  gcc-gfortran-14.1.1-4.fc41.s390x                                              
  gcc-plugin-annobin-14.1.1-4.fc41.s390x                                        
  glibc-devel-2.39.9000-18.fc41.s390x                                           
  glibc-headers-s390-2.39.9000-18.fc41.noarch                                   
  groff-base-1.23.0-6.fc40.s390x                                                
  gsl-2.7.1-8.fc41.s390x                                                        
  gsl-devel-2.7.1-8.fc41.s390x                                                  
  guile30-3.0.9-1.fc41.s390x                                                    
  hdf5-1.12.1-15.fc40.s390x                                                     
  hdf5-devel-1.12.1-15.fc40.s390x                                               
  htslib-1.15.1-5.fc40.s390x                                                    
  htslib-devel-1.15.1-5.fc40.s390x                                              
  kernel-headers-6.10.0-0.rc1.17.fc41.s390x                                     
  libaec-1.1.2-1.fc40.s390x                                                     
  libaec-devel-1.1.2-1.fc40.s390x                                               
  libasan-14.1.1-4.fc41.s390x                                                   
  libatomic-14.1.1-4.fc41.s390x                                                 
  libb2-0.98.1-11.fc40.s390x                                                    
  libgfortran-14.1.1-4.fc41.s390x                                               
  libicu-74.2-1.fc40.s390x                                                      
  libicu-devel-74.2-1.fc40.s390x                                                
  libmpc-1.3.1-5.fc40.s390x                                                     
  libstdc++-devel-14.1.1-4.fc41.s390x                                           
  libubsan-14.1.1-4.fc41.s390x                                                  
  libxcrypt-devel-4.4.36-5.fc40.s390x                                           
  m4-1.4.19-9.fc40.s390x                                                        
  make-1:4.4.1-6.fc40.s390x                                                     
  metis-5.1.0.3-5.fc40.s390x                                                    
  mpdecimal-2.5.1-9.fc40.s390x                                                  
  ncurses-6.4-12.20240127.fc40.s390x                                            
  openblas-0.3.26-4.fc40.s390x                                                  
  openblas-openmp-0.3.26-4.fc40.s390x                                           
  openblas-openmp64-0.3.26-4.fc40.s390x                                         
  perl-AutoLoader-5.74-507.fc41.noarch                                          
  perl-B-1.88-507.fc41.s390x                                                    
  perl-Carp-1.54-502.fc40.noarch                                                
  perl-Class-Struct-0.68-507.fc41.noarch                                        
  perl-Data-Dumper-2.188-503.fc40.s390x                                         
  perl-Digest-1.20-502.fc40.noarch                                              
  perl-Digest-MD5-2.59-3.fc40.s390x                                             
  perl-DynaLoader-1.54-507.fc41.s390x                                           
  perl-Encode-4:3.21-505.fc41.s390x                                             
  perl-Errno-1.37-507.fc41.s390x                                                
  perl-Exporter-5.78-3.fc40.noarch                                              
  perl-Fcntl-1.15-507.fc41.s390x                                                
  perl-Fedora-VSP-0.001-34.fc40.noarch                                          
  perl-File-Basename-2.86-507.fc41.noarch                                       
  perl-File-Compare-1.100.700-507.fc41.noarch                                   
  perl-File-Copy-2.41-507.fc41.noarch                                           
  perl-File-Find-1.43-507.fc41.noarch                                           
  perl-File-Path-2.18-503.fc40.noarch                                           
  perl-File-Temp-1:0.231.100-503.fc40.noarch                                    
  perl-File-stat-1.13-507.fc41.noarch                                           
  perl-FileHandle-2.05-507.fc41.noarch                                          
  perl-Getopt-Long-1:2.57-4.fc41.noarch                                         
  perl-Getopt-Std-1.13-507.fc41.noarch                                          
  perl-HTTP-Tiny-0.088-5.fc40.noarch                                            
  perl-IO-1.52-507.fc41.s390x                                                   
  perl-IO-Socket-IP-0.42-2.fc40.noarch                                          
  perl-IO-Socket-SSL-2.085-1.fc40.noarch                                        
  perl-IPC-Open3-1.22-507.fc41.noarch                                           
  perl-MIME-Base64-3.16-503.fc40.s390x                                          
  perl-Mozilla-CA-20240313-1.fc41.noarch                                        
  perl-Net-SSLeay-1.94-3.fc40.s390x                                             
  perl-POSIX-2.13-507.fc41.s390x                                                
  perl-PathTools-3.89-502.fc40.s390x                                            
  perl-Pod-Escapes-1:1.07-503.fc40.noarch                                       
  perl-Pod-Perldoc-3.28.01-503.fc40.noarch                                      
  perl-Pod-Simple-1:3.45-6.fc40.noarch                                          
  perl-Pod-Usage-4:2.03-504.fc41.noarch                                         
  perl-Scalar-List-Utils-5:1.63-503.fc40.s390x                                  
  perl-SelectSaver-1.02-507.fc41.noarch                                         
  perl-Socket-4:2.038-1.fc41.s390x                                              
  perl-Storable-1:3.32-502.fc40.s390x                                           
  perl-Symbol-1.09-507.fc41.noarch                                              
  perl-Term-ANSIColor-5.01-504.fc40.noarch                                      
  perl-Term-Cap-1.18-503.fc40.noarch                                            
  perl-Text-ParseWords-3.31-502.fc40.noarch                                     
  perl-Text-Tabs+Wrap-2024.001-1.fc41.noarch                                    
  perl-Thread-Queue-3.14-503.fc40.noarch                                        
  perl-Time-Local-2:1.350-5.fc40.noarch                                         
  perl-URI-5.28-1.fc41.noarch                                                   
  perl-base-2.27-507.fc41.noarch                                                
  perl-constant-1.33-503.fc40.noarch                                            
  perl-generators-1.16-5.fc40.noarch                                            
  perl-if-0.61.000-507.fc41.noarch                                              
  perl-interpreter-4:5.38.2-507.fc41.s390x                                      
  perl-libnet-3.15-503.fc40.noarch                                              
  perl-libs-4:5.38.2-507.fc41.s390x                                             
  perl-locale-1.10-507.fc41.noarch                                              
  perl-macros-4:5.38.2-507.fc41.noarch                                          
  perl-mro-1.28-507.fc41.s390x                                                  
  perl-overload-1.37-507.fc41.noarch                                            
  perl-overloading-0.02-507.fc41.noarch                                         
  perl-parent-1:0.241-502.fc40.noarch                                           
  perl-podlators-1:5.01-502.fc40.noarch                                         
  perl-threads-1:2.36-503.fc40.s390x                                            
  perl-threads-shared-1.68-502.fc40.s390x                                       
  perl-vars-1.05-507.fc41.noarch                                                
  python-pip-wheel-24.0-2.fc41.noarch                                           
  python3-3.12.3-2.fc41.s390x                                                   
  python3-libs-3.12.3-2.fc41.s390x                                              
  python3-numpy-1:1.26.4-5.fc41.s390x                                           
  tzdata-2024a-8.fc41.noarch                                                    
  zlib-ng-compat-devel-2.1.6-4.fc41.s390x                                       

Complete!
Finish: build setup for mmseq-1.0.11-19.fc41.src.rpm
Start: rpmbuild mmseq-1.0.11-19.fc41.src.rpm
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1706140800
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.CZLNUE
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ test -d /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/rm -rf /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.i9pblT
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ rm -rf mmseq-1.0.11
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/1.0.11.zip
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd mmseq-1.0.11
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #2 (mmseq-zlib.patch):
+ echo 'Patch #2 (mmseq-zlib.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .mmseq-zlib.patch --fuzz=0
patching file src/Makefile
+ rm -f bin/offsetGTF-linux bin/postdiff-linux
+ sed -e s/-lblas/-lflexiblas/g -e s/-llapack/-lflexiblas/g -i src/Makefile
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.PxXuvz
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ cd src
+ make -j2 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection'
g++ -O3 -c sokal.cc
g++ -fopenmp -O3 -c uh.cpp 
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 hitsio.cpp hitsio.hpp -c hitsio.cpp
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection    -c -o fasta.o fasta.c
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -O3 offsetGTF.cpp -o ../bin/offsetGTF
offsetGTF.cpp: In function ‘int main(int, char**)’:
offsetGTF.cpp:115:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  115 |       while(gff_ind < gff_positions[chrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:117:57: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  117 |               pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:114:11: warning: unused variable ‘curoff’ [-Wunused-variable]
  114 |       int curoff=offset;
      |           ^~~~~~
offsetGTF.cpp:150:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  150 |       while(gff_ind < gff_positions[prevchrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:163:53: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  163 |           pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:177:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  177 |     while(gff_ind < gff_positions[chrom].size() && gff_positions[chrom][gff_ind] <= pos) {
      |           ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:235:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  235 |     for(int i=5; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
offsetGTF.cpp:237:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  237 |       if(i < tokens.size()-1) {
      |          ~~^~~~~~~~~~~~~~~~~
offsetGTF.cpp:108:7: warning: unused variable ‘gff_pos’ [-Wunused-variable]
  108 |   int gff_pos= -1;
      |       ^~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -O3 t2g_hits.cpp -o ../bin/t2g_hits
t2g_hits.cpp: In function ‘int main(int, char**)’:
t2g_hits.cpp:90:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   90 |         for(int i=2; i < tokens.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~
t2g_hits.cpp:112:13: warning: ignoring return value of ‘_FIter std::unique(_FIter, _FIter) [with _FIter = __gnu_cxx::__normal_iterator<__cxx11::basic_string<char>*, vector<__cxx11::basic_string<char> > >]’, declared with attribute ‘nodiscard’ [-Wunused-result]
  112 |       unique(comb.begin(), comb.end());
      |       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
                 from t2g_hits.cpp:27:
/usr/include/c++/14/bits/stl_algo.h:891:5: note: declared here
  891 |     unique(_ForwardIterator __first, _ForwardIterator __last)
      |     ^~~~~~
g++ -DVERSION=1.0.11 -DARMA_64BIT_WORD -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 uh.o sokal.o mmcollapse.cpp -o ../bin/mmcollapse -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
mmcollapse.cpp: In function ‘void get_unidentifiable_transcripts(std::string, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, bool>&)’:
mmcollapse.cpp:158:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  158 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:213:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  213 |     for(int i=0; i < tokens2.size(); i++) isIdent[tokens2[i]]=1;
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  259 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void collapse(arma::cube&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<int, std::allocator<int> >)’:
mmcollapse.cpp:400:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  400 |   for(int s=0; s < R.n_slices; s++) {
      |                ~~^~~~~~~~~~~~
mmcollapse.cpp:401:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  401 |     for(int t=0; t < candidates.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:402:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  402 |       for(int j=1; j < indexes.size(); j++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:414:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  414 |     for(int j=1; j < indexes.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:417:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  417 |       for(int i=0; i < R.n_cols; i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:426:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  426 |   for(int i=0; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:431:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  431 |   for(int i=1; i < tset.size(); i++) {
      |                ~~^~~~~~~~~~~~~
mmcollapse.cpp:437:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  437 |   for(int i=1; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘std::map<int, int> join_traces(arma::mat&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >)’:
mmcollapse.cpp:445:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  445 |   for(int t=0; t < allnames.size(); t++) tmap[allnames[t]]=t;
      |                ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:452:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  452 |   for(int c=0; c < candidates.size(); c++) {
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:456:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  456 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:464:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  464 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:469:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  469 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:476:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  476 |   for(int i=0; i < toshed.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void mean_corrs(const arma::cube&, const arma::umat&, arma::mat&, arma::mat&, std::vector<int, std::allocator<int> >, std::vector<int, std::allocator<int> >, double)’:
mmcollapse.cpp:486:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  486 |     for(int v= 0; v < R.n_rows; v++) {
      |                   ~~^~~~~~~~~~
mmcollapse.cpp:492:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare]
  492 |       for(int i=0; i < u.size(); i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp: In function ‘void get_corrs(arma::cube&, arma::mat&, const std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&)’:
mmcollapse.cpp:519:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  519 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:543:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  543 |         for(int t=0; t < tokens.size(); t++) {
      |                      ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘int main(int, char**)’:
mmcollapse.cpp:632:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  632 |   for(int i=1; i < basenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:691:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  691 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:707:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  707 |   for(int i=0; i < candidates.size(); i++) ts.push_back(i);
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:732:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  732 |     for(int i=0 ;i < maxcorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:738:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  738 |     for(int i=0 ;i < mincorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
mmcollapse.cpp:802:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  802 |         for(int i=0 ;i < maxcorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:808:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  808 |         for(int i=0 ;i < mincorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:827:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  827 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:852:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  852 |       for(int t=0; t < tokens.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:882:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  882 |       for(int t=0; t < tokens2.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:934:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  934 |     for(int t=0; t < M.n_cols; t++) {
      |                  ~~^~~~~~~~~~
mmcollapse.cpp:963:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  963 |     for(int i=1; i < tokens2.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:976:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  976 |       if(MM.size1() < i+1 ) factor1=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:977:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  977 |       if(MM.size2() < j+1 ) factor2=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:1010:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1010 |     for(int t=0; t < ids.size(); t++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1083:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1083 |     for(int i=0; i < ids.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1092:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1092 |     for(int v = 0; v < M.n_cols; v++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:840:9: warning: unused variable ‘isident’ [-Wunused-variable]
  840 |     int isident=0;
      |         ^~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O2 bms.cpp bms.hpp -c bms.cpp
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 sokal.o uh.o hitsio.o mmseq.cpp -o ../bin/mmseq -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
mmseq.cpp: In function ‘std::vector<double> meanvar(std::vector<double>, double, double)’:
mmseq.cpp:130:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  130 |   for(int i=0;i < v.size(); i++) {
      |               ~~^~~~~~~~~~
mmseq.cpp: In function ‘int main(int, char**)’:
mmseq.cpp:244:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  244 |       for(int i=0; i < tokens.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~
mmseq.cpp:423:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  423 |       if(M.size1() < m ) factor1=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:424:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  424 |       if(M.size2() < n ) factor2=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:594:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  594 |   for(unsigned t=0; t < n; t++)  {
      |                     ~~^~~
mmseq.cpp:736:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  736 |     for(unsigned t=0; t < n; t++)
      |                       ~~^~~
mmseq.cpp:765:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  765 |       for(unsigned t=0; t < n; t++)
      |                         ~~^~~
mmseq.cpp:774:11: warning: unused variable ‘threadid’ [-Wunused-variable]
  774 |       int threadid=OMP_GET_THREAD_NUM;
      |           ^~~~~~~~
mmseq.cpp:829:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  829 |   for(unsigned t=0; t < n; t++)
      |                     ~~^~~
mmseq.cpp:912:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  912 |       for(unsigned t=0; t < n; t++) {
      |                         ~~^~~
mmseq.cpp:940:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  940 |   for(int i=0; i < identical_transcripts.size() * trace_length; i++) mu_trace_identical[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:961:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  961 |   for(int i=0; i < gene2transcripts.size() * trace_length; i++) mu_trace_gene[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1098:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1098 |   for(unsigned t=0; t < n; t++) gofs << indexSid[t] << " ";
      |                     ~~^~~
mmseq.cpp:1112:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1112 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1136:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1136 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1144:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1144 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1149:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1149 |   for(int i=0;i < identical_transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1156:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1156 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1161:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1161 |   for(int i=0;i < gene2transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1168:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1168 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1179:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1179 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1189:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1189 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1208:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1208 |     for(int t=0; t < identical_transcripts.size() ; t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1212:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1212 |     for(int t=0; t < gene2transcripts.size(); t++){
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1226:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1226 |   for(int i=0; i < identical_transcripts.size() ; i++) meanmu_identical[i] /= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1227:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1227 |   for(int i=0; i < gene2transcripts.size(); i++) meanmu_gene[i]/= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1330:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1330 |   for(int t=0; t < identical_transcripts.size(); t++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1349:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1349 |   for(int g=0; g < gene2transcripts.size(); g++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1473:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1473 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1475:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1475 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1482:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1482 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1484:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1484 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1506 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1508:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1508 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1514:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1514 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1516:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1516 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1536:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1536 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1538:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1538 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1544:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1544 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1546:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1546 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1560:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1560 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1562:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1562 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1582:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1582 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1584:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1584 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1599:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1599 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1601:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1601 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1619:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1619 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1621:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1621 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1644:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1644 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1646:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1646 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1656:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1656 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1658:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1658 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:308:8: warning: unused variable ‘buf16384’ [-Wunused-variable]
  308 |   char buf16384[16384];
      |        ^~~~~~~~
mmseq.cpp:391:8: warning: variable ‘doublehit’ set but not used [-Wunused-but-set-variable]
  391 |   bool doublehit;
      |        ^~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 fasta.o hitsio.o bam2hits.cpp -o ../bin/bam2hits -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
bam2hits.cpp: In function ‘void outputMergeHeaders(std::vector<FastaRecord>&, char, const char*, bool, HitsfileWriter&)’:
bam2hits.cpp:109:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  109 |   for(int i=0; i < sortedfastas.size()-1; i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:119:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  119 |       for(int j=0; j < curSet.size()-1; j++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  137 |   for(int j=0; j < curSet.size()-1; j++) {
      |                ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp: In function ‘std::vector<Alignment> repetitiveTranscriptFilter(std::vector<Alignment>&, int)’:
bam2hits.cpp:218:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Alignment>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  218 |   for(int j=0; j < alns.size(); j++) {
      |                ~~^~~~~~~~~~~~~
bam2hits.cpp:219:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  219 |     if(i < torem.size() && j==torem[i]) {
      |        ~~^~~~~~~~~~~~~~
bam2hits.cpp: In function ‘int main(int, char**)’:
bam2hits.cpp:518:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  518 |         if(_B != tg[0].size()-2) {
      |            ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:520:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  520 |           if(_A == tg[0].size()-2) {
      |              ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:522:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  522 |             if(_A != tg[1].size()-2) {
      |                ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:558:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  558 |       for(int i=1; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:609:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  609 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:645:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  645 |     for(int i=0;i < fastas.size(); i++) transcriptCounts[i] /= (double)fastas[i].seq().size();
      |                 ~~^~~~~~~~~~~~~~~
bam2hits.cpp:659:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  659 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:662:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  662 |         for(int j =0; j < fastas[i].seq().size(); j++) {
      |                       ~~^~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:663:44: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  663 |           int tag = (j <= MSEQ_BEFORE || j >= fastas[i].seq().size()-MSEQ_AFTER) ? -2 : 0;
      |                                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:791:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  791 |       for(int j=MSEQ_BEFORE + 1; j <= fastas[i].seq().length()-MSEQ_AFTER; j++) {
      |                                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:920:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  920 |     for(int j=1; j < frequencies.size()-WINDOWFORISIZEMODE + 1; j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:948:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  948 |     for(int i=0; i < testIsizes.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
bam2hits.cpp:959:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  959 |     for(int i=0; i < heights.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:997:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  997 |       for(int fl=1; fl <= (it->seq()).size(); fl++) {
      |                     ~~~^~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:1091:56: warning: comparing the result of pointer addition ‘(bam_aux_get(((const bam1_t*)line), ((const char*)"NM")) + ((sizetype)ait.__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >::operator->()->Alignment::NM()))’ and NULL [-Waddress]
 1091 |             ait->NM(ait->NM() + bam_aux_get(line,"NM") == NULL ? 0 : bam_aux2i(bam_aux_get(line,"NM")));
      |                                                        ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -O3 fasta.o extract_transcripts.cpp -o ../bin/extract_transcripts
extract_transcripts.cpp: In function ‘int main(int, char**)’:
extract_transcripts.cpp:122:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  122 |       for(int i=0; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
extract_transcripts.cpp:169:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  169 |     for(int i=0; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:195:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  195 |       for(int i=0; i < it->starts()->size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~
extract_transcripts.cpp:203:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  203 |       while(faline < stitch.size()) {
      |             ~~~~~~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:108:7: warning: unused variable ‘line’ [-Wunused-variable]
  108 |   int line=0;
      |       ^~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 hitsio.o hitstools.cpp -o ../bin/hitstools -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
hitstools.cpp: In function ‘void convert(char*, std::string)’:
hitstools.cpp:51:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   51 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp: In function ‘int main(int, char**)’:
hitstools.cpp:96:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   96 |                 for(int i = 0; i < transcriptName.size(); i++) {
      |                                ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp:136:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  136 |     for(int i = 0; i < transcriptName.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O2 bms.o mmdiff.cpp -o ../bin/mmdiff -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmdiff.cpp: In function ‘void parse_mmseq(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, int, int, double, bool)’:
mmdiff.cpp:100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  100 |   for(int i=0; i < filenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:111:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  111 |     for(int j=0; j < tokens.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp:138:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  138 |       if(k + 1 > features.size()) {
      |          ~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:147:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  147 |       if(k+1 > y.n_rows) {
      |          ~~~~^~~~~~~~~~
mmdiff.cpp:152:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  152 |       if(!useprops && tokens[lmg_ind]=="NA" || useprops && tokens[mp_ind]=="NA") {
      |          ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:173:62: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  173 |   if(range_start >=0 && range_end > range_start && range_end < y.n_rows) {
      |                                                    ~~~~~~~~~~^~~~~~~~~~
mmdiff.cpp:94:46: warning: variable ‘mcse_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                              ^~~~~~~~
mmdiff.cpp:94:59: warning: variable ‘iact_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                                           ^~~~~~~~
mmdiff.cpp: In function ‘void apply_normalisation(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, arma::Mat<double>&, arma::Mat<double>&, double)’:
mmdiff.cpp:212:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  212 |   for(int i=0; i < uh.n_rows; i++) {
      |                ~~^~~~~~~~~~~
mmdiff.cpp:214:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  214 |     for(int j=0; j < uh.n_cols; j++) {
      |                  ~~^~~~~~~~~~~
mmdiff.cpp:230:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  230 |   for(int i=0; i < use.size(); i++) {
      |                ~~^~~~~~~~~~~~
mmdiff.cpp:232:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  232 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp:239:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  239 |   for(int sample=0; sample < y.n_cols; sample++) {
      |                     ~~~~~~~^~~~~~~~~~
mmdiff.cpp:241:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  241 |     for(int i=0; i < use.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmdiff.cpp:246:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  246 |     for(int i=0; i < y.n_rows; i++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void apply_permutation(arma::Mat<double>&, arma::Mat<double>&)’:
mmdiff.cpp:257:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  257 |   for(int j=0; j< y.n_cols; j++) randinds.push_back(j);
      |                ~^~~~~~~~~~
mmdiff.cpp:258:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  258 |   for(int i=0; i < y.n_rows; i++) {
      |                ~~^~~~~~~~~~
mmdiff.cpp:259:19: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<int*, vector<int, allocator<int> > >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations]
  259 |     random_shuffle(randinds.begin(), randinds.end());
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
                 from mmdiff.cpp:31:
/usr/include/c++/14/bits/stl_algo.h:4491:5: note: declared here
 4491 |     random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last)
      |     ^~~~~~~~~~~~~~
mmdiff.cpp:260:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  260 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void parse_matrices(std::string, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<int>&, int)’:
mmdiff.cpp:310:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  310 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp: In function ‘int main(int, char**)’:
mmdiff.cpp:420:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  420 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:431:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  431 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:439:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  439 |       while(ss < arguments.size()) {
      |             ~~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:451:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  451 |       if(ss != arguments.size()) {
      |          ~~~^~~~~~~~~~~~~~~~~~~
mmdiff.cpp:578:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  578 |   for(int i=0; i < arguments.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:640:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  640 |     for(int i=0; i < simple_de.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:759:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  759 |     if(inburnin && iter == OUTLEN/10 || !inburnin && iter==tuneiters) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:764:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  764 |     for(int feature=0; feature < features.size(); feature++) {
      |                        ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:837:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  837 |     if(inburnin && iter % subsample_burnin ==0 || !inburnin && iter >= tuneiters && (iter - tuneiters) % subsample_iter == 0) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:886:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  886 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
mmdiff.cpp:898:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  898 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:902:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string<char>::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare]
  902 |       found2 = found2==string::npos ? -1 : found2;
      |                ~~~~~~^~~~~~~~~~~~~~
mmdiff.cpp:907:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  907 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:909:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  909 |     if(f < samplenames.size()-1) cout << "\t";
      |        ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:914:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  914 |   for(int feature=0; feature < features.size(); feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:926:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  926 |         for(int l=0; l < M.n_cols; l++) {
      |                      ~~^~~~~~~~~~
mmdiff.cpp:936:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  936 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:939:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  939 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:941:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  941 |       if(f < samplenames.size()-1) cout << "\t";
      |          ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:951:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  951 |       for(int feature=0; feature < features.size(); feature++) {
      |                          ~~~~~~~~^~~~~~~~~~~~~~~~~
/usr/bin/ld: /tmp/cchyiBpD.ltrans0.ltrans.o: in function `main':
/builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/src/bam2hits.cpp:653:(.text.startup+0x3cc8): warning: the use of `tmpnam' is dangerous, better use `mkstemp'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.HbBPmK
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ '[' /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
++ dirname /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build
+ mkdir /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/bam2hits /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/extract_transcripts /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/hitstools /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmcollapse /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmdiff /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmseq /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/offsetGTF /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/t2g_hits /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/fastagrep.sh bin/mouse_strain_transcriptome.sh bin/usage.sh /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/filterGTF.rb bin/haploref.rb bin/testregexp.rb /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/ensembl_gtf_to_gff.pl /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.0.11-19.fc41 --unique-debug-suffix -1.0.11-19.fc41.s390x --unique-debug-src-base mmseq-1.0.11-19.fc41.s390x --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11
find-debuginfo: starting
Extracting debug info from 8 files
DWARF-compressing 8 files
sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/mmseq-1.0.11-19.fc41.s390x
542 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/fastagrep.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/mouse_strain_transcriptome.sh from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/bin/usage.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/filterGTF.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/haploref.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/testregexp.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/ensembl_gtf_to_gff.pl from /usr/bin/env perl to #!/usr/bin/perl
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
Cannot initialize handler pyc: ModuleNotFoundError: No module named 'marshalparser'
[src/multiprocess.rs:66:9] &cmd = Command {
    program: "/usr/bin/add-determinism",
    args: [
        "/usr/bin/add-determinism",
        "--socket",
        "3",
        "--brp",
        "--handler",
        "ar,jar,javadoc",
    ],
    env: CommandEnv {
        clear: false,
        vars: {
            "SOURCE_DATE_EPOCH": Some(
                "1706140800",
            ),
        },
    },
    create_pidfd: false,
}
Bye!
Bye!
Reading /builddir/build/BUILD/mmseq-1.0.11-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.KtVeF1
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
++ bin/mmseq --version
++ true
+ test mmseq-1.0.11 = mmseq-1.0.11
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: mmseq-1.0.11-19.fc41.s390x
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.N3UBJe
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ cd mmseq-1.0.11
+ DOCDIR=/builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/README.md /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/COPYING /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/doc /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: mmseq = 1.0.11-19.fc41 mmseq(s390-64) = 1.0.11-19.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/bash /usr/bin/perl /usr/bin/ruby /usr/bin/sh libboost_iostreams.so.1.83.0()(64bit) libboost_regex.so.1.83.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.2)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgsl.so.27()(64bit) libgslcblas.so.0()(64bit) libhts.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) perl(strict) rtld(GNU_HASH)
Processing files: mmseq-debugsource-1.0.11-19.fc41.s390x
Provides: mmseq-debugsource = 1.0.11-19.fc41 mmseq-debugsource(s390-64) = 1.0.11-19.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: mmseq-debuginfo-1.0.11-19.fc41.s390x
Provides: debuginfo(build-id) = 330f07b333afd53fdda01ab7b7f05e08a489050c debuginfo(build-id) = 64178e24df6b49d10b60606d35fa3361952b0758 debuginfo(build-id) = 86bd70d37b74c412c996be51accbf16764c5b809 debuginfo(build-id) = 89523fdb8214f9cd59436e823911030a406205aa debuginfo(build-id) = c9f36efb6ec740e3c4163757833042eab211b91d debuginfo(build-id) = d970e6571a36a76d8fcd8770dd0a102b5f21ac1b debuginfo(build-id) = d9ea6d1da7d3987068b55655580042d45028964b debuginfo(build-id) = e1f765cab986d7f39aeae8e64c819d68daa3c706 mmseq-debuginfo = 1.0.11-19.fc41 mmseq-debuginfo(s390-64) = 1.0.11-19.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: mmseq-debugsource(s390-64) = 1.0.11-19.fc41
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
Wrote: /builddir/build/RPMS/mmseq-1.0.11-19.fc41.s390x.rpm
Wrote: /builddir/build/RPMS/mmseq-debugsource-1.0.11-19.fc41.s390x.rpm
Wrote: /builddir/build/RPMS/mmseq-debuginfo-1.0.11-19.fc41.s390x.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.z5rvRw
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ test -d /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/mmseq-1.0.11-build
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild mmseq-1.0.11-19.fc41.src.rpm
Finish: build phase for mmseq-1.0.11-19.fc41.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-39-s390x-1717106068.170626/root/var/log/dnf.log
/var/lib/mock/fedora-39-s390x-1717106068.170626/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-39-s390x-1717106068.170626/root/var/log/dnf.rpm.log
INFO: Done(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-19.fc41.src.rpm) Config(child) 2 minutes 17 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "19.fc41",
            "arch": "src"
        },
        {
            "name": "mmseq-debuginfo",
            "epoch": null,
            "version": "1.0.11",
            "release": "19.fc41",
            "arch": "s390x"
        },
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "19.fc41",
            "arch": "s390x"
        },
        {
            "name": "mmseq-debugsource",
            "epoch": null,
            "version": "1.0.11",
            "release": "19.fc41",
            "arch": "s390x"
        }
    ]
}
RPMResults finished