Warning: Permanently added '98.84.96.199' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8479967-fedora-41-aarch64 --chroot fedora-41-aarch64 Version: 1.2 PID: 8930 Logging PID: 8931 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 8479967, 'buildroot_pkgs': [], 'chroot': 'fedora-41-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': '84260f25bf6eb92cdd08ba68cb345c8b1f455fe2', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/dolfin', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'dolfin', 'package_version': '2019.1.0.post0-55', 'project_dirname': 'openblas-0.3.23', 'project_name': 'openblas-0.3.23', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-41-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/zbyszek', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': None, 'submitter': 'https://src.fedoraproject.org/user/zbyszek', 'tags': [], 'task_id': '8479967-fedora-41-aarch64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/dolfin /var/lib/copr-rpmbuild/workspace/workdir-6ymejwts/dolfin --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/dolfin', '/var/lib/copr-rpmbuild/workspace/workdir-6ymejwts/dolfin', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-6ymejwts/dolfin'... Running: git checkout 84260f25bf6eb92cdd08ba68cb345c8b1f455fe2 -- cmd: ['git', 'checkout', '84260f25bf6eb92cdd08ba68cb345c8b1f455fe2', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-6ymejwts/dolfin rc: 0 stdout: stderr: Note: switching to '84260f25bf6eb92cdd08ba68cb345c8b1f455fe2'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 84260f2 automatic import of dolfin Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-6ymejwts/dolfin rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading dolfin-2019.1.0.post0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o dolfin-2019.1.0.post0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/dolfin/dolfin-2019.1.0.post0.tar.gz/md5/79a564ec8f605b8ec434366828e84b60/dolfin-2019.1.0.post0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 10.2M 100 10.2M 0 0 289M 0 --:--:-- --:--:-- --:--:-- 293M INFO: Reading stdout from command: md5sum dolfin-2019.1.0.post0.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-6ymejwts/dolfin/dolfin.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-6ymejwts/dolfin --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1736239149.761532 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.0 starting (python version = 3.13.0, NVR = mock-6.0-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-6ymejwts/dolfin/dolfin.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-6ymejwts/dolfin --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1736239149.761532 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-6ymejwts/dolfin/dolfin.spec) Config(fedora-41-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 6.0 INFO: Mock Version: 6.0 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-aarch64-bootstrap-1736239149.761532/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:41 INFO: Pulling image: registry.fedoraproject.org/fedora:41 INFO: Tagging container image as mock-bootstrap-7b95d24e-e710-4c19-87c2-e54303bef9d3 INFO: Checking that 1c78d34b197b02b497306932dab0106e623c5c0c2a4fd8d8ae046bc4feb9dca6 image matches host's architecture INFO: Copy content of container 1c78d34b197b02b497306932dab0106e623c5c0c2a4fd8d8ae046bc4feb9dca6 to /var/lib/mock/fedora-41-aarch64-bootstrap-1736239149.761532/root INFO: mounting 1c78d34b197b02b497306932dab0106e623c5c0c2a4fd8d8ae046bc4feb9dca6 with podman image mount INFO: image 1c78d34b197b02b497306932dab0106e623c5c0c2a4fd8d8ae046bc4feb9dca6 as /var/lib/containers/storage/overlay/1c368ff83793935c1c25b75be610ffa76fffea390c67a14c0c9612592ada226a/merged INFO: umounting image 1c78d34b197b02b497306932dab0106e623c5c0c2a4fd8d8ae046bc4feb9dca6 (/var/lib/containers/storage/overlay/1c368ff83793935c1c25b75be610ffa76fffea390c67a14c0c9612592ada226a/merged) with podman image umount INFO: Removing image mock-bootstrap-7b95d24e-e710-4c19-87c2-e54303bef9d3 INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-aarch64-1736239149.761532/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc41.aarch64 rpm-sequoia-1.7.0-3.fc41.aarch64 dnf5-5.2.8.1-2.fc41.aarch64 dnf5-plugins-5.2.8.1-2.fc41.aarch64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: updates 100% | 7.4 MiB/s | 7.6 MiB | 00m01s fedora 100% | 32.9 MiB/s | 34.0 MiB | 00m01s Copr repository 100% | 63.4 MiB/s | 3.1 MiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 150.0 MiB/s | 14.3 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash aarch64 5.2.37-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.2 MiB bzip2 aarch64 1.0.8-19.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 427.6 KiB coreutils aarch64 9.5-11.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.1 MiB cpio aarch64 2.15-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB diffutils aarch64 3.10-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 MiB fedora-release-common noarch 42-0.12 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 19.8 KiB findutils aarch64 1:4.10.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 MiB gawk aarch64 5.3.0-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.2 MiB glibc-minimal-langpack aarch64 2.40.9000-26.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B grep aarch64 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lua-srpm-macros noarch 1-14.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 KiB lz4-libs aarch64 1.10.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 261.6 KiB mpfr aarch64 4.2.1-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 818.9 KiB ncurses-base noarch 6.5-2.20240629.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 326.3 KiB ncurses-libs aarch64 6.5-2.20240629.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 MiB ocaml-srpm-macros noarch 10-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB openblas-srpm-macros noarch 2-18.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.0 B openldap aarch64 2.6.8-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 747.0 KiB openssl-libs aarch64 1:3.2.2-10.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.3 MiB p11-kit aarch64 0.25.5-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.6 MiB p11-kit-trust aarch64 0.25.5-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 655.7 KiB package-notes-srpm-macros noarch 0.5-12.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 KiB pam aarch64 1.7.0-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.3 MiB pam-libs aarch64 1.7.0-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 223.4 KiB pcre2 aarch64 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 905.5 KiB pcre2-syntax noarch 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 251.6 KiB perl-srpm-macros noarch 1-56.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0 B pkgconf aarch64 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 240.6 KiB pkgconf-m4 noarch 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.4 KiB pkgconf-pkg-config aarch64 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 990.0 B popt aarch64 1.19-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 272.9 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67.5 KiB pyproject-srpm-macros noarch 1.16.3-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 500.0 B qt6-srpm-macros noarch 6.8.1-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0 B readline aarch64 8.2-11.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 753.3 KiB rpm aarch64 4.20.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.9 MiB rpm-build-libs aarch64 4.20.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 262.7 KiB rpm-libs aarch64 4.20.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 797.9 KiB rpm-sequoia aarch64 1.7.0-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 MiB rust-srpm-macros noarch 26.3-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 KiB setup noarch 2.15.0-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.7 KiB sqlite-libs aarch64 3.47.2-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB systemd-libs aarch64 257.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.4 MiB util-linux-core aarch64 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.2 MiB xxhash-libs aarch64 0.8.3-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 84.5 KiB xz-libs aarch64 1:5.6.3-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 266.4 KiB zig-srpm-macros noarch 1-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip aarch64 3.0-42.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 755.7 KiB zlib-ng-compat aarch64 2.2.2-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 133.8 KiB zstd aarch64 1.5.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 155 packages Total size of inbound packages is 50 MiB. Need to download 50 MiB. After this operation, 235 MiB extra will be used (install 235 MiB, remove 0 B). [ 1/155] bzip2-0:1.0.8-19.fc41.aarch64 100% | 3.0 MiB/s | 52.4 KiB | 00m00s [ 2/155] cpio-0:2.15-2.fc41.aarch64 100% | 30.9 MiB/s | 284.8 KiB | 00m00s [ 3/155] coreutils-0:9.5-11.fc42.aarch 100% | 29.8 MiB/s | 1.0 MiB | 00m00s [ 4/155] diffutils-0:3.10-8.fc41.aarch 100% | 48.2 MiB/s | 394.7 KiB | 00m00s [ 5/155] bash-0:5.2.37-1.fc42.aarch64 100% | 42.2 MiB/s | 1.8 MiB | 00m00s [ 6/155] fedora-release-common-0:42-0. 100% | 3.9 MiB/s | 23.9 KiB | 00m00s [ 7/155] findutils-1:4.10.0-4.fc41.aar 100% | 76.1 MiB/s | 545.3 KiB | 00m00s [ 8/155] glibc-minimal-langpack-0:2.40 100% | 24.1 MiB/s | 123.6 KiB | 00m00s [ 9/155] gawk-0:5.3.0-4.fc41.aarch64 100% | 130.7 MiB/s | 1.0 MiB | 00m00s [ 10/155] grep-0:3.11-9.fc41.aarch64 100% | 40.2 MiB/s | 287.8 KiB | 00m00s [ 11/155] gzip-0:1.13-2.fc41.aarch64 100% | 39.8 MiB/s | 163.0 KiB | 00m00s [ 12/155] info-0:7.1.1-2.fc42.aarch64 100% | 44.3 MiB/s | 181.3 KiB | 00m00s [ 13/155] patch-0:2.7.6-25.fc41.aarch64 100% | 31.4 MiB/s | 128.8 KiB | 00m00s [ 14/155] redhat-rpm-config-0:300-1.fc4 100% | 24.8 MiB/s | 76.1 KiB | 00m00s [ 15/155] rpm-build-0:4.20.0-1.fc42.aar 100% | 18.7 MiB/s | 76.5 KiB | 00m00s [ 16/155] sed-0:4.9-3.fc41.aarch64 100% | 59.9 MiB/s | 306.9 KiB | 00m00s [ 17/155] shadow-utils-2:4.17.0-2.fc42. 100% | 134.5 MiB/s | 1.2 MiB | 00m00s [ 18/155] unzip-0:6.0-65.fc42.aarch64 100% | 36.2 MiB/s | 185.5 KiB | 00m00s [ 19/155] tar-2:1.35-4.fc41.aarch64 100% | 103.3 MiB/s | 846.1 KiB | 00m00s [ 20/155] which-0:2.21-42.fc41.aarch64 100% | 8.1 MiB/s | 41.5 KiB | 00m00s [ 21/155] xz-1:5.6.3-2.fc42.aarch64 100% | 75.3 MiB/s | 462.4 KiB | 00m00s [ 22/155] util-linux-0:2.40.2-8.fc42.aa 100% | 112.8 MiB/s | 1.1 MiB | 00m00s [ 23/155] fedora-repos-0:42-0.3.noarch 100% | 3.0 MiB/s | 9.2 KiB | 00m00s [ 24/155] coreutils-common-0:9.5-11.fc4 100% | 149.8 MiB/s | 2.1 MiB | 00m00s [ 25/155] glibc-common-0:2.40.9000-26.f 100% | 41.5 MiB/s | 382.1 KiB | 00m00s [ 26/155] glibc-0:2.40.9000-26.fc42.aar 100% | 121.2 MiB/s | 1.8 MiB | 00m00s [ 27/155] filesystem-srpm-macros-0:3.18 100% | 5.8 MiB/s | 23.9 KiB | 00m00s [ 28/155] libblkid-0:2.40.2-8.fc42.aarc 100% | 40.4 MiB/s | 124.3 KiB | 00m00s [ 29/155] libfdisk-0:2.40.2-8.fc42.aarc 100% | 38.0 MiB/s | 155.7 KiB | 00m00s [ 30/155] rpm-0:4.20.0-1.fc42.aarch64 100% | 63.6 MiB/s | 520.9 KiB | 00m00s [ 31/155] libmount-0:2.40.2-8.fc42.aarc 100% | 50.3 MiB/s | 154.6 KiB | 00m00s [ 32/155] libsmartcols-0:2.40.2-8.fc42. 100% | 27.0 MiB/s | 82.9 KiB | 00m00s [ 33/155] libuuid-0:2.40.2-8.fc42.aarch 100% | 9.6 MiB/s | 29.5 KiB | 00m00s [ 34/155] xz-libs-1:5.6.3-2.fc42.aarch6 100% | 36.2 MiB/s | 111.1 KiB | 00m00s [ 35/155] util-linux-core-0:2.40.2-8.fc 100% | 100.9 MiB/s | 516.4 KiB | 00m00s [ 36/155] fedora-gpg-keys-0:42-0.3.noar 100% | 30.1 MiB/s | 123.4 KiB | 00m00s [ 37/155] fedora-repos-rawhide-0:42-0.3 100% | 2.9 MiB/s | 8.8 KiB | 00m00s [ 38/155] rpm-libs-0:4.20.0-1.fc42.aarc 100% | 59.1 MiB/s | 302.8 KiB | 00m00s [ 39/155] rpm-build-libs-0:4.20.0-1.fc4 100% | 23.2 MiB/s | 95.1 KiB | 00m00s [ 40/155] glibc-gconv-extra-0:2.40.9000 100% | 169.2 MiB/s | 1.5 MiB | 00m00s [ 41/155] libxcrypt-0:4.4.37-4.fc42.aar 100% | 29.4 MiB/s | 120.4 KiB | 00m00s [ 42/155] systemd-libs-0:257.1-1.fc42.a 100% | 122.0 MiB/s | 749.5 KiB | 00m00s [ 43/155] libselinux-0:3.8-0.rc3.1.fc42 100% | 22.1 MiB/s | 90.7 KiB | 00m00s [ 44/155] libsepol-0:3.8-0.rc3.1.fc42.a 100% | 77.4 MiB/s | 316.9 KiB | 00m00s [ 45/155] ncurses-libs-0:6.5-2.20240629 100% | 63.8 MiB/s | 326.5 KiB | 00m00s [ 46/155] libeconf-0:0.7.5-1.fc42.aarch 100% | 10.9 MiB/s | 33.4 KiB | 00m00s [ 47/155] pam-0:1.7.0-3.fc42.aarch64 100% | 85.1 MiB/s | 522.9 KiB | 00m00s [ 48/155] pam-libs-0:1.7.0-3.fc42.aarch 100% | 18.9 MiB/s | 58.0 KiB | 00m00s [ 49/155] audit-libs-0:4.0.2-1.fc41.aar 100% | 24.7 MiB/s | 126.6 KiB | 00m00s [ 50/155] authselect-libs-0:1.5.0-8.fc4 100% | 50.0 MiB/s | 204.7 KiB | 00m00s [ 51/155] authselect-0:1.5.0-8.fc42.aar 100% | 46.0 MiB/s | 141.3 KiB | 00m00s [ 52/155] libcap-ng-0:0.8.5-3.fc41.aarc 100% | 10.7 MiB/s | 32.8 KiB | 00m00s [ 53/155] readline-0:8.2-11.fc42.aarch6 100% | 69.3 MiB/s | 212.7 KiB | 00m00s [ 54/155] zlib-ng-compat-0:2.2.2-1.fc42 100% | 16.0 MiB/s | 65.7 KiB | 00m00s [ 55/155] bzip2-libs-0:1.0.8-19.fc41.aa 100% | 13.9 MiB/s | 42.7 KiB | 00m00s [ 56/155] libacl-0:2.3.2-2.fc41.aarch64 100% | 8.1 MiB/s | 24.9 KiB | 00m00s [ 57/155] libcap-0:2.71-1.fc42.aarch64 100% | 28.3 MiB/s | 86.8 KiB | 00m00s [ 58/155] libgcc-0:14.2.1-6.fc42.aarch6 100% | 38.5 MiB/s | 118.2 KiB | 00m00s [ 59/155] setup-0:2.15.0-9.fc42.noarch 100% | 48.7 MiB/s | 149.6 KiB | 00m00s [ 60/155] libsemanage-0:3.8-0.rc3.1.fc4 100% | 36.6 MiB/s | 112.3 KiB | 00m00s [ 61/155] libzstd-0:1.5.6-2.fc41.aarch6 100% | 56.2 MiB/s | 288.0 KiB | 00m00s [ 62/155] rpm-sequoia-0:1.7.0-3.fc42.aa 100% | 109.2 MiB/s | 782.6 KiB | 00m00s [ 63/155] lua-libs-0:5.4.7-1.fc42.aarch 100% | 25.3 MiB/s | 129.7 KiB | 00m00s [ 64/155] popt-0:1.19-7.fc41.aarch64 100% | 19.3 MiB/s | 59.4 KiB | 00m00s [ 65/155] elfutils-libelf-0:0.192-7.fc4 100% | 50.1 MiB/s | 205.2 KiB | 00m00s [ 66/155] sqlite-libs-0:3.47.2-1.fc42.a 100% | 95.8 MiB/s | 686.5 KiB | 00m00s [ 67/155] elfutils-libs-0:0.192-7.fc42. 100% | 40.9 MiB/s | 251.0 KiB | 00m00s [ 68/155] elfutils-0:0.192-7.fc42.aarch 100% | 60.3 MiB/s | 494.0 KiB | 00m00s [ 69/155] elfutils-debuginfod-client-0: 100% | 7.1 MiB/s | 43.5 KiB | 00m00s [ 70/155] file-libs-0:5.45-8.fc42.aarch 100% | 106.2 MiB/s | 761.3 KiB | 00m00s [ 71/155] file-0:5.45-8.fc42.aarch64 100% | 15.9 MiB/s | 49.0 KiB | 00m00s [ 72/155] libgomp-0:14.2.1-6.fc42.aarch 100% | 67.7 MiB/s | 346.4 KiB | 00m00s [ 73/155] jansson-0:2.14-1.fc42.aarch64 100% | 11.4 MiB/s | 46.9 KiB | 00m00s [ 74/155] debugedit-0:5.1-2.fc42.aarch6 100% | 12.8 MiB/s | 78.8 KiB | 00m00s [ 75/155] libarchive-0:3.7.7-1.fc42.aar 100% | 49.9 MiB/s | 409.1 KiB | 00m00s [ 76/155] pkgconf-pkg-config-0:2.3.0-1. 100% | 2.4 MiB/s | 10.0 KiB | 00m00s [ 77/155] pkgconf-m4-0:2.3.0-1.fc42.noa 100% | 2.8 MiB/s | 14.3 KiB | 00m00s [ 78/155] libpkgconf-0:2.3.0-1.fc42.aar 100% | 9.4 MiB/s | 38.4 KiB | 00m00s [ 79/155] binutils-0:2.43.50-9.fc42.aar 100% | 205.2 MiB/s | 6.2 MiB | 00m00s [ 80/155] zstd-0:1.5.6-2.fc41.aarch64 100% | 44.6 MiB/s | 456.8 KiB | 00m00s [ 81/155] curl-0:8.11.1-2.fc42.aarch64 100% | 42.3 MiB/s | 216.7 KiB | 00m00s [ 82/155] build-reproducibility-srpm-ma 100% | 5.6 MiB/s | 11.5 KiB | 00m00s [ 83/155] add-determinism-0:0.5.0-1.fc4 100% | 109.7 MiB/s | 786.7 KiB | 00m00s [ 84/155] efi-srpm-macros-0:5-13.fc42.n 100% | 4.4 MiB/s | 22.5 KiB | 00m00s [ 85/155] go-srpm-macros-0:3.6.0-5.fc42 100% | 9.1 MiB/s | 28.0 KiB | 00m00s [ 86/155] forge-srpm-macros-0:0.4.0-1.f 100% | 6.4 MiB/s | 19.8 KiB | 00m00s [ 87/155] pyproject-srpm-macros-0:1.16. 100% | 6.8 MiB/s | 13.9 KiB | 00m00s [ 88/155] qt6-srpm-macros-0:6.8.1-4.fc4 100% | 4.5 MiB/s | 9.3 KiB | 00m00s [ 89/155] ansible-srpm-macros-0:1-16.fc 100% | 10.1 MiB/s | 20.8 KiB | 00m00s [ 90/155] dwz-0:0.15-8.fc42.aarch64 100% | 44.7 MiB/s | 137.3 KiB | 00m00s [ 91/155] fonts-srpm-macros-1:2.0.5-17. 100% | 8.8 MiB/s | 27.0 KiB | 00m00s [ 92/155] fpc-srpm-macros-0:1.3-13.fc41 100% | 3.9 MiB/s | 8.0 KiB | 00m00s [ 93/155] ghc-srpm-macros-0:1.9.2-1.fc4 100% | 4.5 MiB/s | 9.1 KiB | 00m00s [ 94/155] gnat-srpm-macros-0:6-6.fc41.n 100% | 2.9 MiB/s | 9.0 KiB | 00m00s [ 95/155] kernel-srpm-macros-0:1.0-24.f 100% | 4.8 MiB/s | 9.9 KiB | 00m00s [ 96/155] lua-srpm-macros-0:1-14.fc41.n 100% | 4.3 MiB/s | 8.9 KiB | 00m00s [ 97/155] ocaml-srpm-macros-0:10-3.fc41 100% | 4.5 MiB/s | 9.2 KiB | 00m00s [ 98/155] openblas-srpm-macros-0:2-18.f 100% | 3.8 MiB/s | 7.7 KiB | 00m00s [ 99/155] package-notes-srpm-macros-0:0 100% | 4.8 MiB/s | 9.8 KiB | 00m00s [100/155] perl-srpm-macros-0:1-56.fc41. 100% | 2.8 MiB/s | 8.5 KiB | 00m00s [101/155] python-srpm-macros-0:3.13-3.f 100% | 7.7 MiB/s | 23.7 KiB | 00m00s [102/155] qt5-srpm-macros-0:5.15.15-1.f 100% | 4.3 MiB/s | 8.9 KiB | 00m00s [103/155] rust-srpm-macros-0:26.3-3.fc4 100% | 5.9 MiB/s | 12.1 KiB | 00m00s [104/155] zig-srpm-macros-0:1-3.fc41.no 100% | 4.0 MiB/s | 8.1 KiB | 00m00s [105/155] ed-0:1.20.2-2.fc41.aarch64 100% | 26.4 MiB/s | 81.2 KiB | 00m00s [106/155] zip-0:3.0-42.fc42.aarch64 100% | 49.8 MiB/s | 255.1 KiB | 00m00s [107/155] libattr-0:2.5.2-4.fc41.aarch6 100% | 8.9 MiB/s | 18.2 KiB | 00m00s [108/155] libtirpc-0:1.3.6-1.rc3.fc42.a 100% | 29.4 MiB/s | 90.4 KiB | 00m00s [109/155] gdbm-1:1.23-7.fc41.aarch64 100% | 47.9 MiB/s | 147.0 KiB | 00m00s [110/155] gdbm-libs-1:1.23-7.fc41.aarch 100% | 13.7 MiB/s | 56.3 KiB | 00m00s [111/155] openssl-libs-1:3.2.2-10.fc42. 100% | 157.6 MiB/s | 2.0 MiB | 00m00s [112/155] libnsl2-0:2.0.1-2.fc41.aarch6 100% | 7.4 MiB/s | 30.1 KiB | 00m00s [113/155] crypto-policies-0:20241128-1. 100% | 24.0 MiB/s | 73.7 KiB | 00m00s [114/155] libpwquality-0:1.4.5-11.fc41. 100% | 35.5 MiB/s | 109.0 KiB | 00m00s [115/155] ncurses-base-0:6.5-2.20240629 100% | 20.8 MiB/s | 63.8 KiB | 00m00s [116/155] ca-certificates-0:2024.2.69_v 100% | 131.8 MiB/s | 944.9 KiB | 00m00s [117/155] krb5-libs-0:1.21.3-3.fc42.aar 100% | 106.2 MiB/s | 761.4 KiB | 00m00s [118/155] libcom_err-0:1.47.2-1.fc42.aa 100% | 6.2 MiB/s | 25.5 KiB | 00m00s [119/155] pcre2-0:10.44-1.fc41.1.aarch6 100% | 55.4 MiB/s | 227.0 KiB | 00m00s [120/155] cracklib-0:2.9.11-6.fc41.aarc 100% | 20.1 MiB/s | 82.3 KiB | 00m00s [121/155] lz4-libs-0:1.10.0-1.fc41.aarc 100% | 23.5 MiB/s | 72.3 KiB | 00m00s [122/155] libxml2-0:2.12.9-1.fc42.aarch 100% | 126.6 MiB/s | 648.3 KiB | 00m00s [123/155] keyutils-libs-0:1.6.3-4.fc41. 100% | 10.4 MiB/s | 31.9 KiB | 00m00s [124/155] libverto-0:0.3.2-9.fc41.aarch 100% | 6.8 MiB/s | 20.9 KiB | 00m00s [125/155] basesystem-0:11-21.fc41.noarc 100% | 2.4 MiB/s | 7.4 KiB | 00m00s [126/155] filesystem-0:3.18-29.fc42.aar 100% | 107.0 MiB/s | 1.1 MiB | 00m00s [127/155] gmp-1:6.3.0-2.fc41.aarch64 100% | 33.0 MiB/s | 270.1 KiB | 00m00s [128/155] elfutils-default-yama-scope-0 100% | 4.1 MiB/s | 12.5 KiB | 00m00s [129/155] mpfr-0:4.2.1-5.fc41.aarch64 100% | 63.4 MiB/s | 324.8 KiB | 00m00s [130/155] json-c-0:0.18-1.fc42.aarch64 100% | 14.8 MiB/s | 45.4 KiB | 00m00s [131/155] libffi-0:3.4.6-3.fc42.aarch64 100% | 12.5 MiB/s | 38.3 KiB | 00m00s [132/155] libstdc++-0:14.2.1-6.fc42.aar 100% | 135.8 MiB/s | 834.1 KiB | 00m00s [133/155] p11-kit-0:0.25.5-4.fc42.aarch 100% | 90.8 MiB/s | 464.7 KiB | 00m00s [134/155] p11-kit-trust-0:0.25.5-4.fc42 100% | 32.8 MiB/s | 134.4 KiB | 00m00s [135/155] alternatives-0:1.31-1.fc42.aa 100% | 18.8 MiB/s | 38.5 KiB | 00m00s [136/155] pcre2-syntax-0:10.44-1.fc41.1 100% | 36.6 MiB/s | 149.9 KiB | 00m00s [137/155] libtasn1-0:4.19.0-9.fc41.aarc 100% | 23.8 MiB/s | 73.0 KiB | 00m00s [138/155] fedora-release-0:42-0.12.noar 100% | 4.2 MiB/s | 13.1 KiB | 00m00s [139/155] fedora-release-identity-basic 100% | 3.4 MiB/s | 13.9 KiB | 00m00s [140/155] libcurl-0:8.11.1-2.fc42.aarch 100% | 68.6 MiB/s | 351.2 KiB | 00m00s [141/155] libnghttp2-0:1.64.0-1.fc42.aa 100% | 15.0 MiB/s | 76.8 KiB | 00m00s [142/155] gdb-minimal-0:15.2-6.fc42.aar 100% | 155.8 MiB/s | 3.9 MiB | 00m00s [143/155] libssh-0:0.11.1-1.fc42.aarch6 100% | 37.9 MiB/s | 233.0 KiB | 00m00s [144/155] libssh-config-0:0.11.1-1.fc42 100% | 3.1 MiB/s | 9.4 KiB | 00m00s [145/155] xxhash-libs-0:0.8.3-1.fc42.aa 100% | 11.0 MiB/s | 33.7 KiB | 00m00s [146/155] openldap-0:2.6.8-6.fc42.aarch 100% | 58.3 MiB/s | 239.0 KiB | 00m00s [147/155] libbrotli-0:1.1.0-5.fc41.aarc 100% | 67.6 MiB/s | 346.2 KiB | 00m00s [148/155] libidn2-0:2.3.7-2.fc41.aarch6 100% | 36.8 MiB/s | 113.0 KiB | 00m00s [149/155] libpsl-0:0.21.5-4.fc41.aarch6 100% | 21.0 MiB/s | 64.4 KiB | 00m00s [150/155] cyrus-sasl-lib-0:2.1.28-27.fc 100% | 127.0 MiB/s | 780.2 KiB | 00m00s [151/155] libevent-0:2.1.12-14.fc41.aar 100% | 41.4 MiB/s | 254.6 KiB | 00m00s [152/155] libtool-ltdl-0:2.5.4-1.fc42.a 100% | 11.0 MiB/s | 33.8 KiB | 00m00s [153/155] libunistring-0:1.1-8.fc41.aar 100% | 105.4 MiB/s | 539.8 KiB | 00m00s [154/155] publicsuffix-list-dafsa-0:202 100% | 19.0 MiB/s | 58.3 KiB | 00m00s [155/155] pkgconf-0:2.3.0-1.fc42.aarch6 100% | 44.4 KiB/s | 45.2 KiB | 00m01s -------------------------------------------------------------------------------- [155/155] Total 100% | 41.8 MiB/s | 50.5 MiB | 00m01s Running transaction [ 1/157] Verify package files 100% | 763.0 B/s | 155.0 B | 00m00s >>> Running pre-transaction scriptlet: filesystem-0:3.18-29.fc42.aarch64 >>> Finished pre-transaction scriptlet: filesystem-0:3.18-29.fc42.aarch64 >>> [RPM] /var/lib/mock/fedora-41-aarch64-1736239149.761532/root/var/cache/dnf/c [ 2/157] Prepare transaction 100% | 2.5 KiB/s | 155.0 B | 00m00s [ 3/157] Installing libgcc-0:14.2.1-6. 100% | 109.3 MiB/s | 223.9 KiB | 00m00s [ 4/157] Installing publicsuffix-list- 100% | 0.0 B/s | 68.3 KiB | 00m00s [ 5/157] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 6/157] Installing fedora-release-ide 100% | 0.0 B/s | 976.0 B | 00m00s [ 7/157] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 8/157] Installing fedora-gpg-keys-0: 100% | 28.0 MiB/s | 172.2 KiB | 00m00s [ 9/157] Installing fedora-repos-0:42- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/157] Installing fedora-release-com 100% | 23.6 MiB/s | 24.1 KiB | 00m00s [ 11/157] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 12/157] Installing setup-0:2.15.0-9.f 100% | 47.3 MiB/s | 726.5 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 13/157] Installing filesystem-0:3.18- 100% | 2.5 MiB/s | 212.6 KiB | 00m00s [ 14/157] Installing basesystem-0:11-21 100% | 0.0 B/s | 124.0 B | 00m00s [ 15/157] Installing pcre2-syntax-0:10. 100% | 124.1 MiB/s | 254.1 KiB | 00m00s [ 16/157] Installing ncurses-base-0:6.5 100% | 49.1 MiB/s | 351.7 KiB | 00m00s [ 17/157] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 18/157] Installing ncurses-libs-0:6.5 100% | 321.2 MiB/s | 2.2 MiB | 00m00s [ 19/157] Installing glibc-0:2.40.9000- 100% | 255.6 MiB/s | 6.1 MiB | 00m00s [ 20/157] Installing bash-0:5.2.37-1.fc 100% | 329.2 MiB/s | 8.2 MiB | 00m00s [ 21/157] Installing glibc-common-0:2.4 100% | 187.2 MiB/s | 1.3 MiB | 00m00s [ 22/157] Installing glibc-gconv-extra- 100% | 361.5 MiB/s | 18.4 MiB | 00m00s [ 23/157] Installing zlib-ng-compat-0:2 100% | 131.5 MiB/s | 134.6 KiB | 00m00s [ 24/157] Installing xz-libs-1:5.6.3-2. 100% | 261.2 MiB/s | 267.5 KiB | 00m00s [ 25/157] Installing bzip2-libs-0:1.0.8 100% | 197.1 MiB/s | 201.9 KiB | 00m00s [ 26/157] Installing libuuid-0:2.40.2-8 100% | 194.0 MiB/s | 198.6 KiB | 00m00s [ 27/157] Installing readline-0:8.2-11. 100% | 245.9 MiB/s | 755.5 KiB | 00m00s [ 28/157] Installing popt-0:1.19-7.fc41 100% | 91.0 MiB/s | 279.5 KiB | 00m00s [ 29/157] Installing libblkid-0:2.40.2- 100% | 204.9 MiB/s | 419.7 KiB | 00m00s [ 30/157] Installing libxcrypt-0:4.4.37 100% | 132.9 MiB/s | 272.3 KiB | 00m00s [ 31/157] Installing libzstd-0:1.5.6-2. 100% | 259.5 MiB/s | 797.3 KiB | 00m00s [ 32/157] Installing elfutils-libelf-0: 100% | 296.6 MiB/s | 1.2 MiB | 00m00s [ 33/157] Installing gmp-1:6.3.0-2.fc41 100% | 235.8 MiB/s | 724.2 KiB | 00m00s [ 34/157] Installing libstdc++-0:14.2.1 100% | 307.0 MiB/s | 2.8 MiB | 00m00s [ 35/157] Installing libeconf-0:0.7.5-1 100% | 78.5 MiB/s | 80.3 KiB | 00m00s [ 36/157] Installing libattr-0:2.5.2-4. 100% | 192.9 MiB/s | 197.5 KiB | 00m00s [ 37/157] Installing libacl-0:2.3.2-2.f 100% | 192.3 MiB/s | 196.9 KiB | 00m00s [ 38/157] Installing gdbm-libs-1:1.23-7 100% | 417.7 MiB/s | 427.7 KiB | 00m00s [ 39/157] Installing mpfr-0:4.2.1-5.fc4 100% | 267.1 MiB/s | 820.5 KiB | 00m00s [ 40/157] Installing gawk-0:5.3.0-4.fc4 100% | 387.6 MiB/s | 4.3 MiB | 00m00s [ 41/157] Installing dwz-0:0.15-8.fc42. 100% | 189.5 MiB/s | 388.2 KiB | 00m00s [ 42/157] Installing unzip-0:6.0-65.fc4 100% | 570.7 MiB/s | 2.3 MiB | 00m00s [ 43/157] Installing file-libs-0:5.45-8 100% | 586.0 MiB/s | 10.0 MiB | 00m00s [ 44/157] Installing file-0:5.45-8.fc42 100% | 15.3 MiB/s | 141.0 KiB | 00m00s [ 45/157] Installing crypto-policies-0: 100% | 22.8 MiB/s | 163.7 KiB | 00m00s [ 46/157] Installing libsmartcols-0:2.4 100% | 282.9 MiB/s | 289.7 KiB | 00m00s [ 47/157] Installing libsepol-0:3.8-0.r 100% | 259.5 MiB/s | 797.2 KiB | 00m00s [ 48/157] Installing libcap-ng-0:0.8.5- 100% | 409.3 MiB/s | 419.1 KiB | 00m00s [ 49/157] Installing audit-libs-0:4.0.2 100% | 268.3 MiB/s | 549.6 KiB | 00m00s [ 50/157] Installing pam-libs-0:1.7.0-3 100% | 220.4 MiB/s | 225.6 KiB | 00m00s [ 51/157] Installing libcap-0:2.71-1.fc 100% | 167.6 MiB/s | 514.8 KiB | 00m00s [ 52/157] Installing systemd-libs-0:257 100% | 269.1 MiB/s | 2.4 MiB | 00m00s [ 53/157] Installing lua-libs-0:5.4.7-1 100% | 192.5 MiB/s | 394.3 KiB | 00m00s [ 54/157] Installing libcom_err-0:1.47. 100% | 108.4 MiB/s | 111.0 KiB | 00m00s [ 55/157] Installing pcre2-0:10.44-1.fc 100% | 295.2 MiB/s | 906.9 KiB | 00m00s [ 56/157] Installing libselinux-0:3.8-0 100% | 192.2 MiB/s | 196.8 KiB | 00m00s [ 57/157] Installing sed-0:4.9-3.fc41.a 100% | 164.3 MiB/s | 1.0 MiB | 00m00s [ 58/157] Installing findutils-1:4.10.0 100% | 263.5 MiB/s | 2.1 MiB | 00m00s [ 59/157] Installing grep-0:3.11-9.fc41 100% | 156.7 MiB/s | 1.1 MiB | 00m00s [ 60/157] Installing xz-1:5.6.3-2.fc42. 100% | 188.8 MiB/s | 1.5 MiB | 00m00s [ 61/157] Installing libmount-0:2.40.2- 100% | 236.8 MiB/s | 485.1 KiB | 00m00s [ 62/157] Installing lz4-libs-0:1.10.0- 100% | 256.5 MiB/s | 262.7 KiB | 00m00s [ 63/157] Installing libffi-0:3.4.6-3.f 100% | 277.2 MiB/s | 283.8 KiB | 00m00s [ 64/157] Installing alternatives-0:1.3 100% | 88.2 MiB/s | 90.3 KiB | 00m00s [ 65/157] Installing libtasn1-0:4.19.0- 100% | 278.9 MiB/s | 285.6 KiB | 00m00s [ 66/157] Installing p11-kit-0:0.25.5-4 100% | 220.5 MiB/s | 2.6 MiB | 00m00s [ 67/157] Installing libunistring-0:1.1 100% | 301.5 MiB/s | 1.8 MiB | 00m00s [ 68/157] Installing libidn2-0:2.3.7-2. 100% | 113.1 MiB/s | 463.1 KiB | 00m00s [ 69/157] Installing libpsl-0:0.21.5-4. 100% | 193.1 MiB/s | 197.7 KiB | 00m00s [ 70/157] Installing p11-kit-trust-0:0. 100% | 58.4 MiB/s | 657.4 KiB | 00m00s [ 71/157] Installing zstd-0:1.5.6-2.fc4 100% | 281.8 MiB/s | 1.7 MiB | 00m00s [ 72/157] Installing util-linux-core-0: 100% | 387.7 MiB/s | 6.2 MiB | 00m00s [ 73/157] Installing tar-2:1.35-4.fc41. 100% | 278.8 MiB/s | 3.1 MiB | 00m00s [ 74/157] Installing libsemanage-0:3.8- 100% | 115.6 MiB/s | 355.0 KiB | 00m00s [ 75/157] Installing shadow-utils-2:4.1 100% | 180.2 MiB/s | 4.5 MiB | 00m00s [ 76/157] Installing zip-0:3.0-42.fc42. 100% | 247.3 MiB/s | 759.6 KiB | 00m00s [ 77/157] Installing gdbm-1:1.23-7.fc41 100% | 227.9 MiB/s | 933.4 KiB | 00m00s [ 78/157] Installing cyrus-sasl-lib-0:2 100% | 345.2 MiB/s | 3.1 MiB | 00m00s [ 79/157] Installing libfdisk-0:2.40.2- 100% | 236.3 MiB/s | 483.9 KiB | 00m00s [ 80/157] Installing bzip2-0:1.0.8-19.f 100% | 211.0 MiB/s | 432.2 KiB | 00m00s [ 81/157] Installing libxml2-0:2.12.9-1 100% | 265.9 MiB/s | 1.9 MiB | 00m00s [ 82/157] Installing sqlite-libs-0:3.47 100% | 283.0 MiB/s | 1.4 MiB | 00m00s [ 83/157] Installing add-determinism-0: 100% | 292.0 MiB/s | 2.0 MiB | 00m00s [ 84/157] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 85/157] Installing filesystem-srpm-ma 100% | 0.0 B/s | 36.8 KiB | 00m00s [ 86/157] Installing ed-0:1.20.2-2.fc41 100% | 278.5 MiB/s | 285.1 KiB | 00m00s [ 87/157] Installing patch-0:2.7.6-25.f 100% | 191.5 MiB/s | 392.1 KiB | 00m00s [ 88/157] Installing elfutils-default-y 100% | 255.4 KiB/s | 2.0 KiB | 00m00s [ 89/157] Installing elfutils-libs-0:0. 100% | 179.8 MiB/s | 736.6 KiB | 00m00s [ 90/157] Installing cpio-0:2.15-2.fc41 100% | 203.4 MiB/s | 1.2 MiB | 00m00s [ 91/157] Installing diffutils-0:3.10-8 100% | 263.7 MiB/s | 2.1 MiB | 00m00s [ 92/157] Installing libgomp-0:14.2.1-6 100% | 246.4 MiB/s | 504.6 KiB | 00m00s [ 93/157] Installing jansson-0:2.14-1.f 100% | 217.4 MiB/s | 222.6 KiB | 00m00s [ 94/157] Installing libpkgconf-0:2.3.0 100% | 194.6 MiB/s | 199.2 KiB | 00m00s [ 95/157] Installing pkgconf-0:2.3.0-1. 100% | 118.7 MiB/s | 243.1 KiB | 00m00s [ 96/157] Installing keyutils-libs-0:1. 100% | 222.5 MiB/s | 227.9 KiB | 00m00s [ 97/157] Installing libverto-0:0.3.2-9 100% | 194.7 MiB/s | 199.3 KiB | 00m00s [ 98/157] Installing json-c-0:0.18-1.fc 100% | 137.2 MiB/s | 140.5 KiB | 00m00s [ 99/157] Installing libnghttp2-0:1.64. 100% | 257.1 MiB/s | 263.3 KiB | 00m00s [100/157] Installing xxhash-libs-0:0.8. 100% | 83.9 MiB/s | 85.9 KiB | 00m00s [101/157] Installing libbrotli-0:1.1.0- 100% | 285.2 MiB/s | 1.1 MiB | 00m00s [102/157] Installing libtool-ltdl-0:2.5 100% | 91.0 MiB/s | 93.2 KiB | 00m00s [103/157] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [104/157] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [105/157] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [106/157] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [107/157] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [108/157] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [109/157] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [110/157] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [111/157] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [112/157] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [113/157] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [114/157] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [115/157] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [116/157] Installing pkgconf-pkg-config 100% | 1.7 MiB/s | 1.8 KiB | 00m00s [117/157] Installing coreutils-common-0 100% | 294.5 MiB/s | 11.2 MiB | 00m00s [118/157] Installing openssl-libs-1:3.2 100% | 298.0 MiB/s | 6.3 MiB | 00m00s [119/157] Installing coreutils-0:9.5-11 100% | 253.4 MiB/s | 8.1 MiB | 00m00s [120/157] Installing ca-certificates-0: 100% | 1.4 MiB/s | 2.4 MiB | 00m02s [121/157] Installing krb5-libs-0:1.21.3 100% | 216.6 MiB/s | 2.6 MiB | 00m00s [122/157] Installing libarchive-0:3.7.7 100% | 223.2 MiB/s | 914.1 KiB | 00m00s [123/157] Installing libtirpc-0:1.3.6-1 100% | 101.2 MiB/s | 207.3 KiB | 00m00s [124/157] Installing gzip-0:1.13-2.fc41 100% | 160.9 MiB/s | 494.4 KiB | 00m00s [125/157] Installing authselect-libs-0: 100% | 132.1 MiB/s | 946.8 KiB | 00m00s [126/157] Installing cracklib-0:2.9.11- 100% | 154.0 MiB/s | 946.3 KiB | 00m00s [127/157] Installing libpwquality-0:1.4 100% | 184.6 MiB/s | 1.1 MiB | 00m00s [128/157] Installing libnsl2-0:2.0.1-2. 100% | 217.9 MiB/s | 223.2 KiB | 00m00s [129/157] Installing pam-0:1.7.0-3.fc42 100% | 215.1 MiB/s | 4.3 MiB | 00m00s [130/157] Installing libssh-0:0.11.1-1. 100% | 212.1 MiB/s | 651.7 KiB | 00m00s [131/157] Installing rpm-sequoia-0:1.7. 100% | 277.8 MiB/s | 2.2 MiB | 00m00s [132/157] Installing rpm-libs-0:4.20.0- 100% | 260.2 MiB/s | 799.4 KiB | 00m00s [133/157] Installing rpm-build-libs-0:4 100% | 257.4 MiB/s | 263.6 KiB | 00m00s [134/157] Installing libevent-0:2.1.12- 100% | 304.7 MiB/s | 1.5 MiB | 00m00s [135/157] Installing openldap-0:2.6.8-6 100% | 183.3 MiB/s | 750.8 KiB | 00m00s [136/157] Installing libcurl-0:8.11.1-2 100% | 275.5 MiB/s | 846.3 KiB | 00m00s [137/157] Installing elfutils-debuginfo 100% | 140.1 MiB/s | 143.5 KiB | 00m00s [138/157] Installing elfutils-0:0.192-7 100% | 309.7 MiB/s | 3.1 MiB | 00m00s [139/157] Installing binutils-0:2.43.50 100% | 319.7 MiB/s | 29.4 MiB | 00m00s [140/157] Installing gdb-minimal-0:15.2 100% | 301.6 MiB/s | 12.7 MiB | 00m00s [141/157] Installing debugedit-0:5.1-2. 100% | 120.6 MiB/s | 246.9 KiB | 00m00s [142/157] Installing curl-0:8.11.1-2.fc 100% | 34.1 MiB/s | 454.4 KiB | 00m00s [143/157] Installing rpm-0:4.20.0-1.fc4 100% | 152.6 MiB/s | 3.4 MiB | 00m00s [144/157] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [145/157] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [146/157] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [147/157] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [148/157] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [149/157] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [150/157] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [151/157] Installing redhat-rpm-config- 100% | 63.0 MiB/s | 193.5 KiB | 00m00s [152/157] Installing rpm-build-0:4.20.0 100% | 349.3 MiB/s | 1.4 MiB | 00m00s [153/157] Installing pyproject-srpm-mac 100% | 1.2 MiB/s | 2.5 KiB | 00m00s [154/157] Installing util-linux-0:2.40. 100% | 346.0 MiB/s | 17.0 MiB | 00m00s [155/157] Installing authselect-0:1.5.0 100% | 102.2 MiB/s | 313.9 KiB | 00m00s [156/157] Installing which-0:2.21-42.fc 100% | 122.2 MiB/s | 250.4 KiB | 00m00s [157/157] Installing info-0:7.1.1-2.fc4 100% | 285.3 KiB/s | 614.0 KiB | 00m02s Warning: skipped OpenPGP checks for 155 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.5.0-1.fc42.aarch64 alternatives-1.31-1.fc42.aarch64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.aarch64 authselect-1.5.0-8.fc42.aarch64 authselect-libs-1.5.0-8.fc42.aarch64 basesystem-11-21.fc41.noarch bash-5.2.37-1.fc42.aarch64 binutils-2.43.50-9.fc42.aarch64 build-reproducibility-srpm-macros-0.5.0-1.fc42.noarch bzip2-1.0.8-19.fc41.aarch64 bzip2-libs-1.0.8-19.fc41.aarch64 ca-certificates-2024.2.69_v8.0.401-4.fc42.noarch coreutils-9.5-11.fc42.aarch64 coreutils-common-9.5-11.fc42.aarch64 cpio-2.15-2.fc41.aarch64 cracklib-2.9.11-6.fc41.aarch64 crypto-policies-20241128-1.gitbb7b0b0.fc42.noarch curl-8.11.1-2.fc42.aarch64 cyrus-sasl-lib-2.1.28-27.fc41.aarch64 debugedit-5.1-2.fc42.aarch64 diffutils-3.10-8.fc41.aarch64 dwz-0.15-8.fc42.aarch64 ed-1.20.2-2.fc41.aarch64 efi-srpm-macros-5-13.fc42.noarch elfutils-0.192-7.fc42.aarch64 elfutils-debuginfod-client-0.192-7.fc42.aarch64 elfutils-default-yama-scope-0.192-7.fc42.noarch elfutils-libelf-0.192-7.fc42.aarch64 elfutils-libs-0.192-7.fc42.aarch64 fedora-gpg-keys-42-0.3.noarch fedora-release-42-0.12.noarch fedora-release-common-42-0.12.noarch fedora-release-identity-basic-42-0.12.noarch fedora-repos-42-0.3.noarch fedora-repos-rawhide-42-0.3.noarch file-5.45-8.fc42.aarch64 file-libs-5.45-8.fc42.aarch64 filesystem-3.18-29.fc42.aarch64 filesystem-srpm-macros-3.18-29.fc42.noarch findutils-4.10.0-4.fc41.aarch64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.4.0-1.fc42.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.aarch64 gdb-minimal-15.2-6.fc42.aarch64 gdbm-1.23-7.fc41.aarch64 gdbm-libs-1.23-7.fc41.aarch64 ghc-srpm-macros-1.9.2-1.fc42.noarch glibc-2.40.9000-26.fc42.aarch64 glibc-common-2.40.9000-26.fc42.aarch64 glibc-gconv-extra-2.40.9000-26.fc42.aarch64 glibc-minimal-langpack-2.40.9000-26.fc42.aarch64 gmp-6.3.0-2.fc41.aarch64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-5.fc42.noarch grep-3.11-9.fc41.aarch64 gzip-1.13-2.fc41.aarch64 info-7.1.1-2.fc42.aarch64 jansson-2.14-1.fc42.aarch64 json-c-0.18-1.fc42.aarch64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.aarch64 krb5-libs-1.21.3-3.fc42.aarch64 libacl-2.3.2-2.fc41.aarch64 libarchive-3.7.7-1.fc42.aarch64 libattr-2.5.2-4.fc41.aarch64 libblkid-2.40.2-8.fc42.aarch64 libbrotli-1.1.0-5.fc41.aarch64 libcap-2.71-1.fc42.aarch64 libcap-ng-0.8.5-3.fc41.aarch64 libcom_err-1.47.2-1.fc42.aarch64 libcurl-8.11.1-2.fc42.aarch64 libeconf-0.7.5-1.fc42.aarch64 libevent-2.1.12-14.fc41.aarch64 libfdisk-2.40.2-8.fc42.aarch64 libffi-3.4.6-3.fc42.aarch64 libgcc-14.2.1-6.fc42.aarch64 libgomp-14.2.1-6.fc42.aarch64 libidn2-2.3.7-2.fc41.aarch64 libmount-2.40.2-8.fc42.aarch64 libnghttp2-1.64.0-1.fc42.aarch64 libnsl2-2.0.1-2.fc41.aarch64 libpkgconf-2.3.0-1.fc42.aarch64 libpsl-0.21.5-4.fc41.aarch64 libpwquality-1.4.5-11.fc41.aarch64 libselinux-3.8-0.rc3.1.fc42.aarch64 libsemanage-3.8-0.rc3.1.fc42.aarch64 libsepol-3.8-0.rc3.1.fc42.aarch64 libsmartcols-2.40.2-8.fc42.aarch64 libssh-0.11.1-1.fc42.aarch64 libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-6.fc42.aarch64 libtasn1-4.19.0-9.fc41.aarch64 libtirpc-1.3.6-1.rc3.fc42.aarch64 libtool-ltdl-2.5.4-1.fc42.aarch64 libunistring-1.1-8.fc41.aarch64 libuuid-2.40.2-8.fc42.aarch64 libverto-0.3.2-9.fc41.aarch64 libxcrypt-4.4.37-4.fc42.aarch64 libxml2-2.12.9-1.fc42.aarch64 libzstd-1.5.6-2.fc41.aarch64 lua-libs-5.4.7-1.fc42.aarch64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.aarch64 mpfr-4.2.1-5.fc41.aarch64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.aarch64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-6.fc42.aarch64 openssl-libs-3.2.2-10.fc42.aarch64 p11-kit-0.25.5-4.fc42.aarch64 p11-kit-trust-0.25.5-4.fc42.aarch64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.7.0-3.fc42.aarch64 pam-libs-1.7.0-3.fc42.aarch64 patch-2.7.6-25.fc41.aarch64 pcre2-10.44-1.fc41.1.aarch64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.aarch64 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.aarch64 popt-1.19-7.fc41.aarch64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.16.3-1.fc42.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.8.1-4.fc42.noarch readline-8.2-11.fc42.aarch64 redhat-rpm-config-300-1.fc42.noarch rpm-4.20.0-1.fc42.aarch64 rpm-build-4.20.0-1.fc42.aarch64 rpm-build-libs-4.20.0-1.fc42.aarch64 rpm-libs-4.20.0-1.fc42.aarch64 rpm-sequoia-1.7.0-3.fc42.aarch64 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.aarch64 setup-2.15.0-9.fc42.noarch shadow-utils-4.17.0-2.fc42.aarch64 sqlite-libs-3.47.2-1.fc42.aarch64 systemd-libs-257.1-1.fc42.aarch64 tar-1.35-4.fc41.aarch64 unzip-6.0-65.fc42.aarch64 util-linux-2.40.2-8.fc42.aarch64 util-linux-core-2.40.2-8.fc42.aarch64 which-2.21-42.fc41.aarch64 xxhash-libs-0.8.3-1.fc42.aarch64 xz-5.6.3-2.fc42.aarch64 xz-libs-5.6.3-2.fc42.aarch64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-42.fc42.aarch64 zlib-ng-compat-2.2.2-1.fc42.aarch64 zstd-1.5.6-2.fc41.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1736121600 Wrote: /builddir/build/SRPMS/dolfin-2019.1.0.post0-55.fc42.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-aarch64-1736239149.761532/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-6ymejwts/dolfin/dolfin.spec) Config(child) 0 minutes 25 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/dolfin-2019.1.0.post0-55.fc42.src.rpm) Config(fedora-41-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-aarch64-bootstrap-1736239149.761532/root. INFO: reusing tmpfs at /var/lib/mock/fedora-41-aarch64-bootstrap-1736239149.761532/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-aarch64-1736239149.761532/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc41.aarch64 rpm-sequoia-1.7.0-3.fc41.aarch64 dnf5-5.2.8.1-2.fc41.aarch64 dnf5-plugins-5.2.8.1-2.fc41.aarch64 Finish: chroot init Start: build phase for dolfin-2019.1.0.post0-55.fc42.src.rpm Start: build setup for dolfin-2019.1.0.post0-55.fc42.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1736121600 Wrote: /builddir/build/SRPMS/dolfin-2019.1.0.post0-55.fc42.src.rpm Updating and loading repositories: fedora 100% | 266.9 KiB/s | 14.7 KiB | 00m00s updates 100% | 149.3 KiB/s | 14.9 KiB | 00m00s Copr repository 100% | 118.2 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 255.3 KiB/s | 3.8 KiB | 00m00s Repositories loaded. Package "pkgconf-2.3.0-1.fc42.aarch64" is already installed. Package Arch Version Repository Size Installing: boost-devel aarch64 1.83.0-9.fc42 copr_base 143.0 MiB chrpath aarch64 0.16-24.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 230.5 KiB cmake aarch64 3.31.3-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 28.8 MiB eigen3-devel noarch 3.4.0-16.fc41 copr_base 8.4 MiB flexiblas-devel aarch64 3.4.4-3.fc42 copr_base 4.9 MiB gcc-c++ aarch64 14.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 36.8 MiB gnupg2 aarch64 2.4.5-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 10.1 MiB hdf5-devel aarch64 1.14.5-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.2 MiB make aarch64 1:4.4.1-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB petsc-devel aarch64 3.22.2-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.0 MiB pybind11-devel aarch64 2.13.6-1.fc42 copr_base 847.8 KiB python3-devel aarch64 3.13.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB python3-dijitso noarch 2019.1.0-20.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 272.4 KiB python3-ffc noarch 2019.1.0.post0-23.fc42 copr_base 3.0 MiB python3-numpy aarch64 1:2.2.1-1.fc42 copr_base 34.0 MiB python3-setuptools noarch 74.1.3-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.4 MiB python3-ufl noarch 2019.1.0-23.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 MiB scotch-devel aarch64 7.0.6-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 61.6 KiB sundials-devel aarch64 7.1.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.9 MiB zlib-ng-compat-devel aarch64 2.2.2-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 106.8 KiB Installing dependencies: Lmod aarch64 8.7.55-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB SuperLU aarch64 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libassuan-0:2.5.7-2.fc41.aarc 100% | 21.7 MiB/s | 66.7 KiB | 00m00s [ 53/143] gnutls-0:3.8.8-1.fc42.aarch64 100% | 117.8 MiB/s | 1.1 MiB | 00m00s [ 54/143] libgcrypt-0:1.11.0-4.fc42.aar 100% | 62.6 MiB/s | 512.7 KiB | 00m00s [ 55/143] libgpg-error-0:1.51-1.fc42.aa 100% | 45.2 MiB/s | 231.6 KiB | 00m00s [ 56/143] libksba-0:1.6.7-2.fc41.aarch6 100% | 38.3 MiB/s | 157.1 KiB | 00m00s [ 57/143] npth-0:1.8-1.fc42.aarch64 100% | 8.2 MiB/s | 25.3 KiB | 00m00s [ 58/143] libmpc-0:1.3.1-6.fc41.aarch64 100% | 23.7 MiB/s | 72.7 KiB | 00m00s [ 59/143] tpm2-tss-0:4.1.3-5.fc42.aarch 100% | 74.2 MiB/s | 379.9 KiB | 00m00s [ 60/143] glibc-devel-0:2.40.9000-26.fc 100% | 68.8 MiB/s | 563.2 KiB | 00m00s [ 61/143] libasan-0:14.2.1-6.fc42.aarch 100% | 60.8 MiB/s | 498.1 KiB | 00m00s [ 62/143] libatomic-0:14.2.1-6.fc42.aar 100% | 14.9 MiB/s | 45.8 KiB | 00m00s [ 63/143] libubsan-0:14.2.1-6.fc42.aarc 100% | 53.7 MiB/s | 220.1 KiB | 00m00s [ 64/143] emacs-filesystem-1:30.0-3.fc4 100% | 2.3 MiB/s | 7.1 KiB | 00m00s [ 65/143] vim-filesystem-2:9.1.984-1.fc 100% | 5.3 MiB/s | 16.4 KiB | 00m00s [ 66/143] jsoncpp-0:1.9.5-8.fc41.aarch6 100% | 29.7 MiB/s | 91.2 KiB | 00m00s [ 67/143] libuv-1:1.49.2-1.fc42.aarch64 100% | 63.5 MiB/s | 260.0 KiB | 00m00s [ 68/143] rhash-0:1.4.5-1.fc42.aarch64 100% | 63.9 MiB/s | 196.2 KiB | 00m00s [ 69/143] SuperLUMT-common-0:4.0.1-3.fc 100% | 125.4 MiB/s | 642.1 KiB | 00m00s [ 70/143] openblas-0:0.3.28-2.fc42.aarc 100% | 10.0 MiB/s | 40.9 KiB | 00m00s [ 71/143] openblas-serial-0:0.3.28-2.fc 100% | 202.2 MiB/s | 3.8 MiB | 00m00s [ 72/143] openblas-openmp64-0:0.3.28-2. 100% | 161.8 MiB/s | 3.9 MiB | 00m00s [ 73/143] openblas-openmp-0:0.3.28-2.fc 100% | 152.9 MiB/s | 4.0 MiB | 00m00s [ 74/143] python3-numpy-f2py-1:2.2.1-1. 100% | 33.7 MiB/s | 449.1 KiB | 00m00s [ 75/143] python3-fiat-0:2019.1.0-22.fc 100% | 48.8 MiB/s | 200.0 KiB | 00m00s [ 76/143] libicu-devel-0:76.1-2.fc42.aa 100% | 122.2 MiB/s | 751.1 KiB | 00m00s [ 77/143] boost-0:1.83.0-9.fc42.aarch64 100% | 1.5 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boost-test-0:1.83.0-9.fc42.aa 100% | 67.6 MiB/s | 207.5 KiB | 00m00s [104/143] suitesparse64-0:7.7.0-2.fc41. 100% | 80.3 MiB/s | 19.4 MiB | 00m00s [105/143] boost-thread-0:1.83.0-9.fc42. 100% | 2.5 MiB/s | 54.4 KiB | 00m00s [106/143] boost-timer-0:1.83.0-9.fc42.a 100% | 1.0 MiB/s | 20.1 KiB | 00m00s [107/143] boost-type_erasure-0:1.83.0-9 100% | 14.2 MiB/s | 29.0 KiB | 00m00s [108/143] boost-wave-0:1.83.0-9.fc42.aa 100% | 91.6 MiB/s | 187.6 KiB | 00m00s [109/143] libusb1-0:1.0.27-4.fc42.aarch 100% | 24.6 MiB/s | 75.6 KiB | 00m00s [110/143] libXau-0:1.0.12-1.fc42.aarch6 100% | 10.6 MiB/s | 32.5 KiB | 00m00s [111/143] nettle-0:3.10-3.fc41.aarch64 100% | 85.5 MiB/s | 437.9 KiB | 00m00s [112/143] libxcrypt-devel-0:4.4.37-4.fc 100% | 9.2 MiB/s | 28.2 KiB | 00m00s [113/143] kernel-headers-0:6.13.0-0.rc6 100% | 162.5 MiB/s | 1.5 MiB | 00m00s [114/143] python3-mpi4py-mpich-0:4.0.1- 100% | 69.7 MiB/s | 785.2 KiB | 00m00s [115/143] python3-mpmath-0:1.3.0-11.fc4 100% | 52.6 MiB/s | 1.1 MiB | 00m00s [116/143] python3-mpich-0:4.2.2-1.fc42. 100% | 2.5 MiB/s | 10.1 KiB | 00m00s [117/143] mpich-0:4.2.2-1.fc42.aarch64 100% | 141.7 MiB/s | 1.8 MiB | 00m00s [118/143] mpi4py-common-0:4.0.1-1.fc42. 100% | 3.8 MiB/s | 19.4 KiB | 00m00s [119/143] Lmod-0:8.7.55-1.fc42.aarch64 100% | 60.0 MiB/s | 245.8 KiB | 00m00s [120/143] libfabric-0:1.22.0-1.fc41.aar 100% | 76.2 MiB/s | 623.9 KiB | 00m00s [121/143] hwloc-libs-0:2.11.2-1.fc42.aa 100% | 138.4 MiB/s | 2.1 MiB | 00m00s [122/143] libibverbs-0:54.0-3.fc42.aarc 100% | 52.8 MiB/s | 432.9 KiB | 00m00s [123/143] librdmacm-0:54.0-3.fc42.aarch 100% | 7.7 MiB/s | 71.3 KiB | 00m00s [124/143] yaksa-0:0.3-6.fc41.aarch64 100% | 205.6 MiB/s | 6.4 MiB | 00m00s [125/143] libnl3-0:3.11.0-1.fc42.aarch6 100% | 38.0 MiB/s | 350.3 KiB | 00m00s [126/143] lua-filesystem-0:1.8.0-12.fc4 100% | 8.3 MiB/s | 33.8 KiB | 00m00s [127/143] lua-json-0:1.3.4-8.fc41.noarc 100% | 12.7 MiB/s | 26.0 KiB | 00m00s [128/143] lua-term-0:0.08-4.fc41.aarch6 100% | 5.3 MiB/s | 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MiB/s | 92.6 KiB | 00m00s [142/143] annobin-plugin-gcc-0:12.80-1. 100% | 136.6 MiB/s | 979.5 KiB | 00m00s [143/143] python3-packaging-0:24.2-2.fc 100% | 28.1 MiB/s | 143.6 KiB | 00m00s -------------------------------------------------------------------------------- [143/143] Total 100% | 281.4 MiB/s | 224.8 MiB | 00m01s Running transaction [ 1/145] Verify package files 100% | 171.0 B/s | 143.0 B | 00m01s [ 2/145] Prepare transaction 100% | 556.0 B/s | 143.0 B | 00m00s [ 3/145] Installing libgfortran-0:14.2 100% | 253.6 MiB/s | 1.5 MiB | 00m00s [ 4/145] Installing boost-system-0:1.8 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 5/145] Installing cmake-filesystem-0 100% | 3.7 MiB/s | 7.6 KiB | 00m00s [ 6/145] Installing boost-chrono-0:1.8 100% | 67.1 MiB/s | 68.7 KiB | 00m00s [ 7/145] Installing boost-thread-0:1.8 100% | 129.7 MiB/s | 132.8 KiB | 00m00s [ 8/145] Installing libicu-0:76.1-2.fc 100% | 337.8 MiB/s | 36.5 MiB | 00m00s [ 9/145] Installing libmpc-0:1.3.1-6.f 100% | 275.7 MiB/s | 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Finish: build setup for dolfin-2019.1.0.post0-55.fc42.src.rpm Start: rpmbuild dolfin-2019.1.0.post0-55.fc42.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1736121600 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.ihyvPv + umask 022 + cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build + test -d /builddir/build/BUILD/dolfin-2019.1.0.post0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/dolfin-2019.1.0.post0-build + /usr/bin/rm -rf /builddir/build/BUILD/dolfin-2019.1.0.post0-build + /usr/bin/mkdir -p /builddir/build/BUILD/dolfin-2019.1.0.post0-build + /usr/bin/mkdir -p /builddir/build/BUILD/dolfin-2019.1.0.post0-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.iAtTca + umask 022 + cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build + /usr/lib/rpm/redhat/gpgverify --keyring=/builddir/build/SOURCES/3083BE4C722232E28AD0828CBED06106DD22BAB3.gpg --signature=/builddir/build/SOURCES/dolfin-2019.1.0.post0.tar.gz.asc --data=/builddir/build/SOURCES/dolfin-2019.1.0.post0.tar.gz gpgv: Signature made Fri Apr 26 07:47:43 2019 UTC gpgv: using RSA key 3083BE4C722232E28AD0828CBED06106DD22BAB3 gpgv: Good signature from "FEniCS Project Steering Council " + cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build + rm -rf dolfin-2019.1.0.post0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/dolfin-2019.1.0.post0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd dolfin-2019.1.0.post0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-pkgconfig-drop-irrelevant-part-from-Libs-and-Cflags.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Add-missing-include-for-compatiblity-with-gcc-13.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + sed -i -r 's|pybind11==|pybind11>=|' python/setup.py + rm cmake/modules/FindBLAS.cmake + cat + sed -r -i 's/#include \n\0/' dolfin/geometry/IntersectionConstruction.cpp dolfin/mesh/MeshFunction.h + sed -r -i 's|boost/detail/endian.hpp|boost/endian/arithmetic.hpp|' dolfin/io/VTKFile.cpp dolfin/io/VTKWriter.cpp + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.N3FHvF + umask 022 + cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd dolfin-2019.1.0.post0 + mkdir -p build + cd build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-unused-variable -DH5_USE_110_API' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-unused-variable -DH5_USE_110_API' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON .. -DBLA_VENDOR=FlexiBLAS -DCMAKE_INSTALL_RPATH_USE_LINK_PATH=off -Wno-dev -- The C compiler identification is GNU 14.2.1 -- The CXX compiler identification is GNU 14.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_PIPE -- Performing Test HAVE_PIPE - Success -- Performing Test HAVE_PEDANTIC -- Performing Test HAVE_PEDANTIC - Success -- Performing Test HAVE_DEBUG -- Performing Test HAVE_DEBUG - Success -- Performing Test HAVE_O2_OPTIMISATION -- Performing Test HAVE_O2_OPTIMISATION - Success -- Could NOT find MPI_C (missing: MPI_C_LIBRARIES MPI_C_INCLUDE_PATH) -- Could NOT find MPI_CXX (missing: MPI_CXX_LIBRARIES MPI_CXX_INCLUDE_PATH) -- Found Boost: /usr/include (found version "1.83.0") found components: timer filesystem program_options iostreams regex -- Found Eigen3: /usr/include/eigen3 (Required is at least version "3.2.90") -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13.1", minimum required is "3") -- Found UFC: /usr/lib/python3.13/site-packages/ffc/backends/ufc (Required is at least version "2019.1") -- Found PkgConfig: /usr/bin/pkg-config (found version "2.3.0") -- Checking for one of the modules 'craypetsc_real;PETSc' -- Test PETSC_TEST_RUNS with shared library linking - Success -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Found PETSc: TRUE (found suitable version "3.22.2", minimum required is "3.7") -- Checking for one of the modules 'crayslepc_real;SLEPc' -- SLEPc could not be found. Be sure to set SLEPC_DIR. (missing: SLEPC_FOUND) (Required is at least version "3.7") -- Checking for package 'AMD' -- Checking for package 'UMFPACK' -- Checking for package 'AMD' -- Checking for package 'CHOLMOD' -- Checking for package 'AMD' -- Found BLAS: /usr/lib64/libflexiblas.so -- UMFPACK could not be found. Be sure to set UMFPACK_DIR. (missing: UMFPACK_INCLUDE_DIRS AMD_LIBRARIES UMFPACK_TEST_RUNS) -- Checking for package 'CHOLMOD' -- Checking for package 'AMD' -- CHOLMOD could not be found. Be sure to set CHOLMOD_DIR. (missing: CHOLMOD_INCLUDE_DIRS CHOLMOD_TEST_RUNS) -- Found HDF5: /lib64/libhdf5.so (found version "1.14.5") found components: C -- Checking for Trilinos -- Unable to find Trilinos (>= 12.4.0) -- Trilinos could not be found -- Found ZLIB: /lib64/libz.so (found version "1.3.1") -- The following features have been enabled: * BUILD_SHARED_LIBS, Build DOLFIN with shared libraries. * DOLFIN_AUTO_DETECT_MPI, Detect MPI automatically (turn this off to use the MPI compiler wrappers directly via setting CXX, CXX, FC). * DOLFIN_WITH_LIBRARY_VERSION, Build with library version information. * DOLFIN_ENABLE_DOCS, Enable generation of documentation. * DOLFIN_ENABLE_MPI, Compile with support for MPI. * DOLFIN_ENABLE_PETSC, Compile with support for PETSc. * DOLFIN_ENABLE_SLEPC, Compile with support for SLEPc. * DOLFIN_ENABLE_TRILINOS, Compile with support for Trilinos. * DOLFIN_ENABLE_UMFPACK, Compile with support for UMFPACK. * DOLFIN_ENABLE_CHOLMOD, Compile with support for CHOLMOD. * DOLFIN_ENABLE_SCOTCH, Compile with support for SCOTCH. * DOLFIN_ENABLE_PARMETIS, Compile with support for ParMETIS. * DOLFIN_ENABLE_SUNDIALS, Compile with support for SUNDIALS. * DOLFIN_ENABLE_ZLIB, Compile with support for zlib. * DOLFIN_ENABLE_HDF5, Compile with support for HDF5. -- The following OPTIONAL packages have been found: * PETSc (required version >= 3.7), Portable, Extensible Toolkit for Scientific Computation, Enables the PETSc linear algebra backend * BLAS, Basic Linear Algebra Subprograms, * HDF5, Hierarchical Data Format 5 (HDF5), * ZLIB, Compression library, -- The following REQUIRED packages have been found: * Boost, Boost C++ libraries, * Eigen3 (required version >= 3.2.90), Lightweight C++ template library for linear algebra, * PythonInterp (required version >= 3), Interactive high-level object-oriented language, * UFC (required version >= 2019.1), Unified language for form-compilers (part of FFC), * PkgConfig -- The following features have been disabled: * CMAKE_USE_RELATIVE_PATHS, Use relative paths in makefiles and projects. * DOLFIN_ENABLE_CODE_COVERAGE, Enable code coverage. * DOLFIN_ENABLE_BENCHMARKS, Enable benchmark programs. * DOLFIN_SKIP_BUILD_TESTS, Skip build tests for testing usability of dependency packages. * DOLFIN_DEPRECATION_ERROR, Turn deprecation warnings into errors. * DOLFIN_ENABLE_GEOMETRY_DEBUGGING, Enable geometry debugging. * CMAKE_INSTALL_RPATH_USE_LINK_PATH, Add paths to linker search and installed rpath. -- The following OPTIONAL packages have not been found: * MPI, Message Passing Interface (MPI) Enables DOLFIN to run in parallel with MPI * SLEPc (required version >= 3.7), Scalable Library for Eigenvalue Problem Computations, * UMFPACK, Sparse LU factorization library, * CHOLMOD, Sparse Cholesky factorization library for sparse matrices, -- -- Generating demo source files from reStructuredText -- -------------------------------------------------- /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/auto-adaptive-poisson/cpp/AdaptivePoisson.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/auto-adaptive-poisson/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/biharmonic/cpp/Biharmonic.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/biharmonic/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/built-in-meshes/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/eigenvalue/cpp/StiffnessMatrix.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/eigenvalue/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/hyperelasticity/cpp/HyperElasticity.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/hyperelasticity/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/mixed-poisson/cpp/MixedPoisson.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/mixed-poisson/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/nonmatching-interpolation/cpp/P1.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/nonmatching-interpolation/cpp/P3.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/nonmatching-interpolation/cpp/main.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/poisson/cpp/Poisson.ufl /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:479: SyntaxWarning: invalid escape sequence '\.' self.marker_regexp = re.compile('^( *(?!\.\.).*)(::)([ \n]*)$') /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/./utils/pylit/pylit.py:1592: SyntaxWarning: invalid escape sequence '\s' match = re.search('coding[=:]\s*([-\w.]+)', firstlines) extract written to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/demo/documented/poisson/cpp/main.cpp -- -- Generating form files in demo, test and bench directories. May take some time... -- ---------------------------------------------------------------------------------------- -- -- Generating CMakeLists.txt files in demo, test and bench directories -- ------------------------------------------------------------------- -- -- Copying demo and test data to build directory. -- ---------------------------------------------- -- Performing Test HAVE_NO_MULTLINE -- Performing Test HAVE_NO_MULTLINE - Success -- Configuring done (23.5s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build + /usr/bin/make -O -j4 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -B/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/CMakeFiles /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/ale /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin/ale /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin/ale/CMakeFiles/compile_ale_forms.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/build make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 0%] Compiling form Poisson1D.ufl cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin/ale && /usr/bin/python3 -m ffc -l dolfin -O -r auto -o /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/ale/Poisson1D.ufl make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 0%] Compiling form Poisson2D.ufl cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin/ale && /usr/bin/python3 -m ffc -l dolfin -O -r auto -o /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/ale/Poisson2D.ufl make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 0%] Compiling form Poisson3D.ufl cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin/ale && /usr/bin/python3 -m ffc -l dolfin -O -r auto -o /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/ale/Poisson3D.ufl make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 0%] Built target compile_ale_forms make[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin/CMakeFiles/dolfin.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/build make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/adaptivesolve.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/adaptivesolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 0%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveLinearVariationalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveLinearVariationalSolver.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/AdaptiveLinearVariationalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/AdaptiveLinearVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/AdaptiveLinearVariationalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 0%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/AdaptiveNonlinearVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/AdaptiveNonlinearVariationalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 0%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/adapt.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/adapt.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/adapt.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/adapt.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/adapt.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/GoalFunctional.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/GoalFunctional.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/GenericAdaptiveVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/GenericAdaptiveVariationalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/marking.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/marking.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 3%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/TimeSeries.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:32, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:30: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:110:37: required from here 110 | HDF5Interface::get_attribute(hdf5_file_id, dataset_name, "time", t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = double; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’ 454 | get_attribute_value(attr_type, attr_id, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:110:37: required from here 110 | HDF5Interface::get_attribute(hdf5_file_id, dataset_name, "time", t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:615:12: warning: unused variable ‘status’ [-Wunused-variable] 615 | herr_t status = H5Aread(attr_id, h5type, &attribute_value); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:84:31: required from ‘void dolfin::TimeSeries::store_object(MPI_Comm, const T&, double, std::vector&, std::string, std::string) [with T = dolfin::GenericVector; MPI_Comm = int; std::string = std::__cxx11::basic_string]’ 84 | HDF5Interface::add_attribute(fid, dataset_name, "time", t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:168:15: required from here 168 | store_object(vector.mpi_comm(), vector, t, _vector_times, _name, "/Vector"); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’ 491 | add_attribute_value(dset_id, attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:84:31: required from ‘void dolfin::TimeSeries::store_object(MPI_Comm, const T&, double, std::vector&, std::string, std::string) [with T = dolfin::GenericVector; MPI_Comm = int; std::string = std::__cxx11::basic_string]’ 84 | HDF5Interface::add_attribute(fid, dataset_name, "time", t); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/TimeSeries.cpp:168:15: required from here 168 | store_object(vector.mpi_comm(), vector, t, _vector_times, _name, "/Vector"); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:523:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 523 | herr_t status = H5Awrite(attribute_id, h5type, &attribute_value); | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/ALE.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/ale/ALE.cpp.o -MF CMakeFiles/dolfin.dir/ale/ALE.cpp.o.d -o CMakeFiles/dolfin.dir/ale/ALE.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/ale/ALE.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/ErrorControl.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/ErrorControl.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/defines.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -DDOLFIN_GIT_COMMIT_HASH=\"unknown\" -DUFC_SIGNATURE=\"1e5e8d5476f82af05ab9c93365d99f971e0284d6\" -MD -MT dolfin/CMakeFiles/dolfin.dir/common/defines.cpp.o -MF CMakeFiles/dolfin.dir/common/defines.cpp.o.d -o CMakeFiles/dolfin.dir/common/defines.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/common/defines.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/init.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/init.cpp.o -MF CMakeFiles/dolfin.dir/common/init.cpp.o.d -o CMakeFiles/dolfin.dir/common/init.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/common/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/MPI.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/MPI.cpp.o -MF CMakeFiles/dolfin.dir/common/MPI.cpp.o.d -o CMakeFiles/dolfin.dir/common/MPI.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/common/MPI.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 6%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o -MF CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o.d -o CMakeFiles/dolfin.dir/common/SubSystemsManager.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/common/SubSystemsManager.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/MeshDisplacement.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/ale/MeshDisplacement.cpp.o -MF CMakeFiles/dolfin.dir/ale/MeshDisplacement.cpp.o.d -o CMakeFiles/dolfin.dir/ale/MeshDisplacement.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/ale/MeshDisplacement.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/Timer.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/Timer.cpp.o -MF CMakeFiles/dolfin.dir/common/Timer.cpp.o.d -o CMakeFiles/dolfin.dir/common/Timer.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/common/Timer.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o -MF CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o.d -o CMakeFiles/dolfin.dir/common/UniqueIdGenerator.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/common/UniqueIdGenerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 1%] Building CXX object dolfin/CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o -MF CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o.d -o CMakeFiles/dolfin.dir/adaptivity/Extrapolation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/adaptivity/Extrapolation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 7%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/timing.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/timing.cpp.o -MF CMakeFiles/dolfin.dir/common/timing.cpp.o.d -o CMakeFiles/dolfin.dir/common/timing.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/common/timing.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/utils.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/utils.cpp.o -MF CMakeFiles/dolfin.dir/common/utils.cpp.o.d -o CMakeFiles/dolfin.dir/common/utils.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/common/utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/common/Variable.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/common/Variable.cpp.o -MF CMakeFiles/dolfin.dir/common/Variable.cpp.o.d -o CMakeFiles/dolfin.dir/common/Variable.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/common/Variable.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/assemble.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/assemble.cpp.o -MF CMakeFiles/dolfin.dir/fem/assemble.cpp.o.d -o CMakeFiles/dolfin.dir/fem/assemble.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/assemble.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 4%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o -MF CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o.d -o CMakeFiles/dolfin.dir/ale/HarmonicSmoothing.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/ale/HarmonicSmoothing.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 9%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/assemble_local.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/assemble_local.cpp.o -MF CMakeFiles/dolfin.dir/fem/assemble_local.cpp.o.d -o CMakeFiles/dolfin.dir/fem/assemble_local.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/assemble_local.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/AssemblerBase.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/AssemblerBase.cpp.o -MF CMakeFiles/dolfin.dir/fem/AssemblerBase.cpp.o.d -o CMakeFiles/dolfin.dir/fem/AssemblerBase.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/AssemblerBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Assembler.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/Assembler.cpp.o -MF CMakeFiles/dolfin.dir/fem/Assembler.cpp.o.d -o CMakeFiles/dolfin.dir/fem/Assembler.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/Assembler.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 12%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o -MF CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o.d -o CMakeFiles/dolfin.dir/fem/DiscreteOperators.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/DiscreteOperators.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Equation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/Equation.cpp.o -MF CMakeFiles/dolfin.dir/fem/Equation.cpp.o.d -o CMakeFiles/dolfin.dir/fem/Equation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/Equation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 10%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o -MF CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o.d -o CMakeFiles/dolfin.dir/fem/DirichletBC.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/DirichletBC.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 12%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DofMap.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/DofMap.cpp.o -MF CMakeFiles/dolfin.dir/fem/DofMap.cpp.o.d -o CMakeFiles/dolfin.dir/fem/DofMap.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/DofMap.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o -MF CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o.d -o CMakeFiles/dolfin.dir/fem/FiniteElement.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/FiniteElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o -MF CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o.d -o CMakeFiles/dolfin.dir/fem/fem_utils.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/fem_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 12%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o -MF CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o.d -o CMakeFiles/dolfin.dir/fem/DofMapBuilder.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/DofMapBuilder.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/DofMapBuilder.cpp: In static member function ‘static void dolfin::DofMapBuilder::compute_node_reordering(dolfin::IndexMap&, std::vector&, const std::unordered_map >&, const std::vector&, const std::vector >&, const std::vector&, const std::set&, MPI_Comm)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/DofMapBuilder.cpp:1663:13: warning: unused variable ‘it’ [-Wunused-variable] 1663 | for (auto it : old_to_new_local) | ^~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 15%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o -MF CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o.d -o CMakeFiles/dolfin.dir/fem/LinearTimeDependentProblem.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/LinearTimeDependentProblem.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 15%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o -MF CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o.d -o CMakeFiles/dolfin.dir/fem/LinearVariationalProblem.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/LinearVariationalProblem.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/LinearVariationalProblem.cpp: In member function ‘void dolfin::LinearVariationalProblem::check_forms() const’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/LinearVariationalProblem.cpp:114:19: warning: loop variable ‘bc’ creates a copy from type ‘const std::shared_ptr’ [-Wrange-loop-construct] 114 | for (const auto bc: _bcs) | ^~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/LinearVariationalProblem.cpp:114:19: note: use reference type to prevent copying 114 | for (const auto bc: _bcs) | ^~ | & make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 14%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/Form.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/Form.cpp.o -MF CMakeFiles/dolfin.dir/fem/Form.cpp.o.d -o CMakeFiles/dolfin.dir/fem/Form.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/Form.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 15%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o -MF CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/fem/LinearVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/LinearVariationalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LocalAssembler.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/LocalAssembler.cpp.o -MF CMakeFiles/dolfin.dir/fem/LocalAssembler.cpp.o.d -o CMakeFiles/dolfin.dir/fem/LocalAssembler.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/LocalAssembler.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshDirichletBC.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshDirichletBC.cpp.o -MF CMakeFiles/dolfin.dir/fem/MultiMeshDirichletBC.cpp.o.d -o CMakeFiles/dolfin.dir/fem/MultiMeshDirichletBC.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/MultiMeshDirichletBC.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 18%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshDofMap.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshDofMap.cpp.o -MF CMakeFiles/dolfin.dir/fem/MultiMeshDofMap.cpp.o.d -o CMakeFiles/dolfin.dir/fem/MultiMeshDofMap.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/MultiMeshDofMap.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 18%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshForm.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshForm.cpp.o -MF CMakeFiles/dolfin.dir/fem/MultiMeshForm.cpp.o.d -o CMakeFiles/dolfin.dir/fem/MultiMeshForm.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/MultiMeshForm.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshAssembler.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/MultiMeshAssembler.cpp.o -MF CMakeFiles/dolfin.dir/fem/MultiMeshAssembler.cpp.o.d -o CMakeFiles/dolfin.dir/fem/MultiMeshAssembler.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/MultiMeshAssembler.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 18%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o -MF CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o.d -o CMakeFiles/dolfin.dir/fem/NonlinearVariationalProblem.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/NonlinearVariationalProblem.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/NonlinearVariationalProblem.cpp: In member function ‘void dolfin::NonlinearVariationalProblem::check_forms() const’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/NonlinearVariationalProblem.cpp:156:19: warning: loop variable ‘bc’ creates a copy from type ‘const std::shared_ptr’ [-Wrange-loop-construct] 156 | for (const auto bc: _bcs) | ^~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/NonlinearVariationalProblem.cpp:156:19: note: use reference type to prevent copying 156 | for (const auto bc: _bcs) | ^~ | & make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 17%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/LocalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/LocalSolver.cpp.o -MF CMakeFiles/dolfin.dir/fem/LocalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/fem/LocalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/LocalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o -MF CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o.d -o CMakeFiles/dolfin.dir/fem/NonlinearVariationalSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/NonlinearVariationalSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/PointSource.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/PointSource.cpp.o -MF CMakeFiles/dolfin.dir/fem/PointSource.cpp.o.d -o CMakeFiles/dolfin.dir/fem/PointSource.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/PointSource.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/solve.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/solve.cpp.o -MF CMakeFiles/dolfin.dir/fem/solve.cpp.o.d -o CMakeFiles/dolfin.dir/fem/solve.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 21%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o -MF CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o.d -o CMakeFiles/dolfin.dir/fem/SparsityPatternBuilder.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/SparsityPatternBuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 20%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/PETScDMCollection.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/PETScDMCollection.cpp.o -MF CMakeFiles/dolfin.dir/fem/PETScDMCollection.cpp.o.d -o CMakeFiles/dolfin.dir/fem/PETScDMCollection.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/PETScDMCollection.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/PETScDMCollection.cpp: In static member function ‘static std::shared_ptr dolfin::PETScDMCollection::create_transfer_matrix(const dolfin::FunctionSpace&, const dolfin::FunctionSpace&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/PETScDMCollection.cpp:545:15: warning: unused variable ‘mend’ [-Wunused-variable] 545 | std::size_t mend = finemap->ownership_range().second; | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/CoefficientAssigner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/CoefficientAssigner.cpp.o -MF CMakeFiles/dolfin.dir/function/CoefficientAssigner.cpp.o.d -o CMakeFiles/dolfin.dir/function/CoefficientAssigner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/CoefficientAssigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 21%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o -MF CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o.d -o CMakeFiles/dolfin.dir/fem/SystemAssembler.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/SystemAssembler.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 21%] Building CXX object dolfin/CMakeFiles/dolfin.dir/fem/UFC.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/fem/UFC.cpp.o -MF CMakeFiles/dolfin.dir/fem/UFC.cpp.o.d -o CMakeFiles/dolfin.dir/fem/UFC.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/UFC.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/assign.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/assign.cpp.o -MF CMakeFiles/dolfin.dir/function/assign.cpp.o.d -o CMakeFiles/dolfin.dir/function/assign.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/assign.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Constant.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/Constant.cpp.o -MF CMakeFiles/dolfin.dir/function/Constant.cpp.o.d -o CMakeFiles/dolfin.dir/function/Constant.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/Constant.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 23%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Expression.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/Expression.cpp.o -MF CMakeFiles/dolfin.dir/function/Expression.cpp.o.d -o CMakeFiles/dolfin.dir/function/Expression.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/Expression.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/FunctionAXPY.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/FunctionAXPY.cpp.o -MF CMakeFiles/dolfin.dir/function/FunctionAXPY.cpp.o.d -o CMakeFiles/dolfin.dir/function/FunctionAXPY.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/FunctionAXPY.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/FunctionAssigner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/FunctionAssigner.cpp.o -MF CMakeFiles/dolfin.dir/function/FunctionAssigner.cpp.o.d -o CMakeFiles/dolfin.dir/function/FunctionAssigner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/FunctionAssigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o -MF CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o.d -o CMakeFiles/dolfin.dir/function/GenericFunction.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/GenericFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 25%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/Function.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/Function.cpp.o -MF CMakeFiles/dolfin.dir/function/Function.cpp.o.d -o CMakeFiles/dolfin.dir/function/Function.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/Function.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o -MF CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o.d -o CMakeFiles/dolfin.dir/function/FunctionSpace.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/FunctionSpace.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/MultiMeshCoefficientAssigner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/MultiMeshCoefficientAssigner.cpp.o -MF CMakeFiles/dolfin.dir/function/MultiMeshCoefficientAssigner.cpp.o.d -o CMakeFiles/dolfin.dir/function/MultiMeshCoefficientAssigner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/MultiMeshCoefficientAssigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 26%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/LagrangeInterpolator.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/LagrangeInterpolator.cpp.o -MF CMakeFiles/dolfin.dir/function/LagrangeInterpolator.cpp.o.d -o CMakeFiles/dolfin.dir/function/LagrangeInterpolator.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/LagrangeInterpolator.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 28%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/MultiMeshSubSpace.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/MultiMeshSubSpace.cpp.o -MF CMakeFiles/dolfin.dir/function/MultiMeshSubSpace.cpp.o.d -o CMakeFiles/dolfin.dir/function/MultiMeshSubSpace.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/MultiMeshSubSpace.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 28%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/MultiMeshFunctionSpace.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/MultiMeshFunctionSpace.cpp.o -MF CMakeFiles/dolfin.dir/function/MultiMeshFunctionSpace.cpp.o.d -o CMakeFiles/dolfin.dir/function/MultiMeshFunctionSpace.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/MultiMeshFunctionSpace.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 28%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/MultiMeshFunction.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/MultiMeshFunction.cpp.o -MF CMakeFiles/dolfin.dir/function/MultiMeshFunction.cpp.o.d -o CMakeFiles/dolfin.dir/function/MultiMeshFunction.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/MultiMeshFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 29%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/SpecialFacetFunction.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/SpecialFacetFunction.cpp.o -MF CMakeFiles/dolfin.dir/function/SpecialFacetFunction.cpp.o.d -o CMakeFiles/dolfin.dir/function/SpecialFacetFunction.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/SpecialFacetFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 29%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/BoxMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS 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/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/generation/BoxMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 31%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/IntervalMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/IntervalMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/IntervalMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/IntervalMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/generation/IntervalMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 29%] Building CXX object dolfin/CMakeFiles/dolfin.dir/function/SpecialFunctions.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/function/SpecialFunctions.cpp.o -MF CMakeFiles/dolfin.dir/function/SpecialFunctions.cpp.o.d -o CMakeFiles/dolfin.dir/function/SpecialFunctions.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/function/SpecialFunctions.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 31%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/RectangleMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/RectangleMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/RectangleMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/RectangleMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/generation/RectangleMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 31%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/SphericalShellMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/SphericalShellMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/SphericalShellMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/SphericalShellMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/generation/SphericalShellMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 31%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/UnitDiscMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/UnitDiscMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/UnitDiscMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/UnitDiscMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/generation/UnitDiscMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 32%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/UnitTetrahedronMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/UnitTetrahedronMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/UnitTetrahedronMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/UnitTetrahedronMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/generation/UnitTetrahedronMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 32%] Building CXX object dolfin/CMakeFiles/dolfin.dir/generation/UnitTriangleMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/generation/UnitTriangleMesh.cpp.o -MF CMakeFiles/dolfin.dir/generation/UnitTriangleMesh.cpp.o.d -o CMakeFiles/dolfin.dir/generation/UnitTriangleMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/generation/UnitTriangleMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/CollisionPredicates.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/CollisionPredicates.cpp.o -MF CMakeFiles/dolfin.dir/geometry/CollisionPredicates.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/CollisionPredicates.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/CollisionPredicates.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/ConvexTriangulation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/ConvexTriangulation.cpp.o -MF CMakeFiles/dolfin.dir/geometry/ConvexTriangulation.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/ConvexTriangulation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/ConvexTriangulation.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/ConvexTriangulation.cpp: In static member function ‘static std::vector > dolfin::ConvexTriangulation::_triangulate_1d(const std::vector&, std::size_t)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/ConvexTriangulation.cpp:238:10: warning: variable ‘collinear’ set but not used [-Wunused-but-set-variable] 238 | bool collinear = true; | ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 32%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/BoundingBoxTree.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/BoundingBoxTree.cpp.o -MF CMakeFiles/dolfin.dir/geometry/BoundingBoxTree.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/BoundingBoxTree.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/BoundingBoxTree.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 35%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/GeometryPredicates.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/GeometryPredicates.cpp.o -MF CMakeFiles/dolfin.dir/geometry/GeometryPredicates.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/GeometryPredicates.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/GeometryPredicates.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/GeometryDebugging.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/GeometryDebugging.cpp.o -MF CMakeFiles/dolfin.dir/geometry/GeometryDebugging.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/GeometryDebugging.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp: In static member function ‘static void dolfin::GeometryDebugging::print(const std::vector&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:42:20: warning: loop variable ‘p’ creates a copy from type ‘const dolfin::Point’ [-Wrange-loop-construct] 42 | for (const Point p : simplex) | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:42:20: note: use reference type to prevent copying 42 | for (const Point p : simplex) | ^ | & /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp: In static member function ‘static void dolfin::GeometryDebugging::print(const std::vector&, const std::vector&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:52:20: warning: loop variable ‘p’ creates a copy from type ‘const dolfin::Point’ [-Wrange-loop-construct] 52 | for (const Point p : simplex_0) | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:52:20: note: use reference type to prevent copying 52 | for (const Point p : simplex_0) | ^ | & /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:57:20: warning: loop variable ‘p’ creates a copy from type ‘const dolfin::Point’ [-Wrange-loop-construct] 57 | for (const Point p : simplex_1) | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/GeometryDebugging.cpp:57:20: note: use reference type to prevent copying 57 | for (const Point p : simplex_1) | ^ | & make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 35%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/intersect.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/intersect.cpp.o -MF CMakeFiles/dolfin.dir/geometry/intersect.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/intersect.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/intersect.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/Point.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/Point.cpp.o -MF CMakeFiles/dolfin.dir/geometry/Point.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/Point.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/Point.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/MeshPointIntersection.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/MeshPointIntersection.cpp.o -MF CMakeFiles/dolfin.dir/geometry/MeshPointIntersection.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/MeshPointIntersection.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/MeshPointIntersection.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/predicates.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/predicates.cpp.o -MF CMakeFiles/dolfin.dir/geometry/predicates.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/predicates.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/predicates.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 34%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/GenericBoundingBoxTree.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/GenericBoundingBoxTree.cpp.o -MF CMakeFiles/dolfin.dir/geometry/GenericBoundingBoxTree.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/GenericBoundingBoxTree.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/GenericBoundingBoxTree.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 35%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/IntersectionConstruction.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/IntersectionConstruction.cpp.o -MF CMakeFiles/dolfin.dir/geometry/IntersectionConstruction.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/IntersectionConstruction.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/IntersectionConstruction.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 39%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o -MF CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o.d -o CMakeFiles/dolfin.dir/graph/GraphColoring.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/graph/GraphColoring.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 39%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o -MF CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o.d -o CMakeFiles/dolfin.dir/graph/BoostGraphOrdering.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/graph/BoostGraphOrdering.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o -MF CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o.d -o CMakeFiles/dolfin.dir/graph/ParMETIS.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/graph/ParMETIS.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o -MF CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o.d -o CMakeFiles/dolfin.dir/graph/SCOTCH.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/graph/SCOTCH.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/base64.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/base64.cpp.o -MF CMakeFiles/dolfin.dir/io/base64.cpp.o.d -o CMakeFiles/dolfin.dir/io/base64.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/base64.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 40%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o -MF CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o.d -o CMakeFiles/dolfin.dir/graph/ZoltanInterface.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/graph/ZoltanInterface.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 39%] Building CXX object dolfin/CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o -MF CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o.d -o CMakeFiles/dolfin.dir/graph/GraphBuilder.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/graph/GraphBuilder.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/graph/GraphBuilder.cpp: In static member function ‘static int32_t dolfin::GraphBuilder::compute_nonlocal_dual_graph(MPI_Comm, const boost::multi_array&, const dolfin::CellType&, int64_t, std::vector >&, FacetCellMap&, std::set&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/graph/GraphBuilder.cpp:364:21: warning: unused variable ‘num_vertices_per_cell’ [-Wunused-variable] 364 | const std::int8_t num_vertices_per_cell = cell_type.num_entities(0); | ^~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 42%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/GenericFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/GenericFile.cpp.o -MF CMakeFiles/dolfin.dir/io/GenericFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/GenericFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/GenericFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 42%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/File.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/File.cpp.o -MF CMakeFiles/dolfin.dir/io/File.cpp.o.d -o CMakeFiles/dolfin.dir/io/File.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/File.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/File.cpp: In member function ‘void dolfin::File::init(MPI_Comm, std::string, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/File.cpp:150:61: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 150 | const std::string extension = boost::filesystem::extension(path); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from /usr/include/boost/filesystem.hpp:21, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/File.cpp:21: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/File.cpp:157:63: warning: ‘std::string boost::filesystem::basename(const path&)’ is deprecated: Use path::stem() instead [-Wdeprecated-declarations] 157 | boost::filesystem::extension(boost::filesystem::basename(path)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/boost/filesystem/convenience.hpp:35:20: note: declared here 35 | inline std::string basename(const path& p) | ^~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/File.cpp:157:35: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 157 | boost::filesystem::extension(boost::filesystem::basename(path)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 42%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/HDF5Attribute.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/HDF5Attribute.cpp.o -MF CMakeFiles/dolfin.dir/io/HDF5Attribute.cpp.o.d -o CMakeFiles/dolfin.dir/io/HDF5Attribute.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:28: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = double; std::string = std::__cxx11::basic_string]’ 65 | HDF5Interface::add_attribute(hdf5_file_id, dataset_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:95:12: required from here 95 | set_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ 65 | HDF5Interface::add_attribute(hdf5_file_id, dataset_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:101:12: required from here 101 | set_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = std::vector; std::string = std::__cxx11::basic_string]’ 65 | HDF5Interface::add_attribute(hdf5_file_id, dataset_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:107:12: required from here 107 | set_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = std::vector; std::string = std::__cxx11::basic_string]’ 65 | HDF5Interface::add_attribute(hdf5_file_id, dataset_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:113:12: required from here 113 | set_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = std::__cxx11::basic_string; std::string = std::__cxx11::basic_string]’ 65 | HDF5Interface::add_attribute(hdf5_file_id, dataset_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:119:12: required from here 119 | set_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = double; std::string = std::__cxx11::basic_string]’ 88 | HDF5Interface::get_attribute(hdf5_file_id, dataset_name, attribute_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 | attribute_value); | ~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:125:12: required from here 125 | get_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ 88 | HDF5Interface::get_attribute(hdf5_file_id, dataset_name, attribute_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 | attribute_value); | ~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:131:12: required from here 131 | get_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = std::vector; std::string = std::__cxx11::basic_string]’ 88 | HDF5Interface::get_attribute(hdf5_file_id, dataset_name, attribute_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 | attribute_value); | ~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:137:12: required from here 137 | get_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = std::vector; std::string = std::__cxx11::basic_string]’ 88 | HDF5Interface::get_attribute(hdf5_file_id, dataset_name, attribute_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 | attribute_value); | ~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:143:12: required from here 143 | get_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = std::__cxx11::basic_string; std::string = std::__cxx11::basic_string]’ 88 | HDF5Interface::get_attribute(hdf5_file_id, dataset_name, attribute_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 | attribute_value); | ~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:151:14: required from here 151 | get_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’ 491 | add_attribute_value(dset_id, attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = double; std::string = std::__cxx11::basic_string]’ 65 | HDF5Interface::add_attribute(hdf5_file_id, dataset_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:95:12: required from here 95 | set_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:523:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 523 | herr_t status = H5Awrite(attribute_id, h5type, &attribute_value); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’ 491 | add_attribute_value(dset_id, attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ 65 | HDF5Interface::add_attribute(hdf5_file_id, dataset_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:101:12: required from here 101 | set_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:523:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 523 | herr_t status = H5Awrite(attribute_id, h5type, &attribute_value); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const std::vector&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ 491 | add_attribute_value(dset_id, attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = std::vector; std::string = std::__cxx11::basic_string]’ 65 | HDF5Interface::add_attribute(hdf5_file_id, dataset_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:107:12: required from here 107 | set_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:555:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 555 | herr_t status = H5Awrite(attribute_id, h5type, attribute_value.data()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const std::vector&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ 491 | add_attribute_value(dset_id, attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:65:31: required from ‘void dolfin::HDF5Attribute::set_value(std::string, const T&) [with T = std::vector; std::string = std::__cxx11::basic_string]’ 65 | HDF5Interface::add_attribute(hdf5_file_id, dataset_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:113:12: required from here 113 | set_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:555:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 555 | herr_t status = H5Awrite(attribute_id, h5type, attribute_value.data()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = double; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’ 454 | get_attribute_value(attr_type, attr_id, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = double; std::string = std::__cxx11::basic_string]’ 88 | HDF5Interface::get_attribute(hdf5_file_id, dataset_name, attribute_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 | attribute_value); | ~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:125:12: required from here 125 | get_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:615:12: warning: unused variable ‘status’ [-Wunused-variable] 615 | herr_t status = H5Aread(attr_id, h5type, &attribute_value); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = long unsigned int; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’ 454 | get_attribute_value(attr_type, attr_id, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ 88 | HDF5Interface::get_attribute(hdf5_file_id, dataset_name, attribute_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 | attribute_value); | ~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:131:12: required from here 131 | get_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:615:12: warning: unused variable ‘status’ [-Wunused-variable] 615 | herr_t status = H5Aread(attr_id, h5type, &attribute_value); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, std::vector&) [with T = double; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ 454 | get_attribute_value(attr_type, attr_id, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = std::vector; std::string = std::__cxx11::basic_string]’ 88 | HDF5Interface::get_attribute(hdf5_file_id, dataset_name, attribute_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 | attribute_value); | ~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:137:12: required from here 137 | get_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:636:15: warning: unused variable ‘ndims’ [-Wunused-variable] 636 | const int ndims = H5Sget_simple_extent_dims(dataspace, cur_size, max_size); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:642:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 642 | herr_t status = H5Aread(attr_id, h5type, attribute_value.data()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, std::vector&) [with T = long unsigned int; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ 454 | get_attribute_value(attr_type, attr_id, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:88:31: required from ‘void dolfin::HDF5Attribute::get_value(std::string, T&) const [with T = std::vector; std::string = std::__cxx11::basic_string]’ 88 | HDF5Interface::get_attribute(hdf5_file_id, dataset_name, attribute_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 | attribute_value); | ~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.cpp:143:12: required from here 143 | get_value(attribute_name, value); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:636:15: warning: unused variable ‘ndims’ [-Wunused-variable] 636 | const int ndims = H5Sget_simple_extent_dims(dataspace, cur_size, max_size); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:642:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 642 | herr_t status = H5Aread(attr_id, h5type, attribute_value.data()); | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 43%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/HDF5Interface.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/HDF5Interface.cpp.o -MF CMakeFiles/dolfin.dir/io/HDF5Interface.cpp.o.d -o CMakeFiles/dolfin.dir/io/HDF5Interface.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:32, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:26: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static hid_t dolfin::HDF5Interface::open_file(MPI_Comm, std::string, std::string, bool)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:96:10: warning: unused variable ‘status’ [-Wunused-variable] 96 | herr_t status = H5Pclose(plist_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static void dolfin::HDF5Interface::close_file(hid_t)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:104:10: warning: unused variable ‘status’ [-Wunused-variable] 104 | herr_t status = H5Fclose(hdf5_file_handle); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static void dolfin::HDF5Interface::flush_file(hid_t)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:110:10: warning: unused variable ‘status’ [-Wunused-variable] 110 | herr_t status = H5Fflush(hdf5_file_handle, H5F_SCOPE_GLOBAL); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static const std::string dolfin::HDF5Interface::get_attribute_type(hid_t, std::string, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:135:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 135 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static void dolfin::HDF5Interface::delete_attribute(hid_t, std::string, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:196:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 196 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static const std::vector > dolfin::HDF5Interface::list_attributes(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:234:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 234 | herr_t status = H5Aiterate2(dset_id, H5_INDEX_NAME, H5_ITER_INC, &n, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static bool dolfin::HDF5Interface::has_attribute(hid_t, std::string, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:250:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 250 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static bool dolfin::HDF5Interface::has_group(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:272:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 272 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static bool dolfin::HDF5Interface::has_dataset(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:303:10: warning: unused variable ‘status’ [-Wunused-variable] 303 | herr_t status = H5Pclose(lapl_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static void dolfin::HDF5Interface::add_group(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:336:14: warning: unused variable ‘status’ [-Wunused-variable] 336 | herr_t status = H5Gclose(group_id_vis); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static int dolfin::HDF5Interface::dataset_rank(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:359:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 359 | herr_t status = H5Sclose(space); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static std::vector dolfin::HDF5Interface::get_dataset_shape(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:387:13: warning: unused variable ‘ndims’ [-Wunused-variable] 387 | const int ndims = H5Sget_simple_extent_dims(space, size.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:391:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 391 | herr_t status = H5Sclose(space); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static int dolfin::HDF5Interface::num_datasets_in_group(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:405:10: warning: unused variable ‘status’ [-Wunused-variable] 405 | herr_t status = H5Gget_info_by_name(hdf5_file_handle, group_name.c_str(), | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp: In static member function ‘static std::vector > dolfin::HDF5Interface::dataset_list(hid_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.cpp:418:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' 418 | herr_t status; | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 43%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/HDF5Utility.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/HDF5Utility.cpp.o -MF CMakeFiles/dolfin.dir/io/HDF5Utility.cpp.o.d -o CMakeFiles/dolfin.dir/io/HDF5Utility.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 37%] Building CXX object dolfin/CMakeFiles/dolfin.dir/geometry/SimplexQuadrature.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/geometry/SimplexQuadrature.cpp.o -MF CMakeFiles/dolfin.dir/geometry/SimplexQuadrature.cpp.o.d -o CMakeFiles/dolfin.dir/geometry/SimplexQuadrature.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/geometry/SimplexQuadrature.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 45%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/pugixml.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/pugixml.cpp.o -MF CMakeFiles/dolfin.dir/io/pugixml.cpp.o.d -o CMakeFiles/dolfin.dir/io/pugixml.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/pugixml.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 45%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/RAWFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/RAWFile.cpp.o -MF CMakeFiles/dolfin.dir/io/RAWFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/RAWFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/RAWFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 45%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/SVGFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/SVGFile.cpp.o -MF CMakeFiles/dolfin.dir/io/SVGFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/SVGFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/SVGFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 45%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/VTKFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/VTKFile.cpp.o -MF CMakeFiles/dolfin.dir/io/VTKFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/VTKFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/VTKFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 46%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o -MF CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o.d -o CMakeFiles/dolfin.dir/io/VTKWriter.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/VTKWriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 46%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/X3DFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/X3DFile.cpp.o -MF CMakeFiles/dolfin.dir/io/X3DFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/X3DFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/X3DFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 43%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/HDF5File.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/HDF5File.cpp.o -MF CMakeFiles/dolfin.dir/io/HDF5File.cpp.o.d -o CMakeFiles/dolfin.dir/io/HDF5File.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:50: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp: In member function ‘void dolfin::HDF5File::write(const dolfin::Mesh&, std::size_t, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:446:24: warning: unused variable ‘num_cells’ [-Wunused-variable] 446 | const std::int64_t num_cells | ^~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp: In member function ‘void dolfin::HDF5File::write(const dolfin::Function&, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:918:30: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = plus; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 918 | std::bind2nd(std::plus(), offset)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_function.h:1435, from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/istream:40, from /usr/include/c++/14/fstream:40, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:23: /usr/include/c++/14/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp: In member function ‘void dolfin::HDF5File::read(dolfin::Function&, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1067:21: warning: unused variable ‘num_global_dofs’ [-Wunused-variable] 1067 | const std::size_t num_global_dofs = vector_shape[0]; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:172:31: required from here 172 | HDF5Interface::write_dataset(_hdf5_file_id, dataset_name, local_data, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 | local_range, global_size, mpi_io, chunking); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:181:31: required from here 181 | HDF5Interface::add_attribute(_hdf5_file_id, dataset_name, "partition", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 | partitions); | ~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:222:35: required from here 222 | HDF5Interface::get_attribute(_hdf5_file_id, dataset_name, "partition", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 | partitions); | ~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:257:30: required from here 257 | HDF5Interface::read_dataset(_hdf5_file_id, dataset_name, local_range, data); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolmake[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' fin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:465:33: required from here 465 | HDF5Interface::add_attribute(_hdf5_file_id, topology_dataset, "celltype", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 | CellType::type2string(cell_type)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1046:30: required from here 1046 | HDF5Interface::read_dataset(_hdf5_file_id, cells_dataset_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1047 | cell_range, input_cells); | ~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1058:30: required from here 1058 | HDF5Interface::read_dataset(_hdf5_file_id, cell_dofs_dataset_name, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1059 | std::make_pair(x_cell_dofs.front(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1060 | x_cell_dofs.back()), | ~~~~~~~~~~~~~~~~~~~~ 1061 | input_cell_dofs); | ~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1640:33: required from here 1640 | HDF5Interface::get_attribute(_hdf5_file_id, topology_path, "celltype", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1641 | cell_type_str); | ~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = long int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1820:30: required from here 1820 | HDF5Interface::read_dataset(_hdf5_file_id, topology_path, cell_data_range, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1821 | topology_data); | ~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const std::vector&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ 491 | add_attribute_value(dset_id, attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:181:31: required from here 181 | HDF5Interface::add_attribute(_hdf5_file_id, dataset_name, "partition", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 | partitions); | ~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:555:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 555 | herr_t status = H5Awrite(attribute_id, h5type, attribute_value.data()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, std::vector&) [with T = long unsigned int; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ 454 | get_attribute_value(attr_type, attr_id, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:222:35: required from here 222 | HDF5Interface::get_attribute(_hdf5_file_id, dataset_name, "partition", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 | partitions); | ~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:636:15: warning: unused variable ‘ndims’ [-Wunused-variable] 636 | const int ndims = H5Sget_simple_extent_dims(dataspace, cur_size, max_size); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:642:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 642 | herr_t status = H5Aread(attr_id, h5type, attribute_value.data()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = long int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:277:33: required from ‘void dolfin::HDF5File::write_data(std::string, const std::vector&, std::vector, bool) [with T = long int; std::string = std::__cxx11::basic_string]’ 277 | HDF5Interface::write_dataset(_hdf5_file_id, dset_name, data, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 | range, global_size, use_mpi_io, chunking); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:450:15: required from here 450 | write_data(topology_dataset, topological_data, global_size, mpi_io); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:277:33: required from ‘void dolfin::HDF5File::write_data(std::string, const std::vector&, std::vector, bool) [with T = int; std::string = std::__cxx11::basic_string]’ 277 | HDF5Interface::write_dataset(_hdf5_file_id, dset_name, data, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 | range, global_size, use_mpi_io, chunking); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:925:13: required from here 925 | write_data(name + "/cell_dofs", cell_dofs, global_size, mpi_io); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:277:33: required from ‘void dolfin::HDF5File::write_data(std::string, const std::vector&, std::vector, bool) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ 277 | HDF5Interface::write_dataset(_hdf5_file_id, dset_name, data, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 | range, global_size, use_mpi_io, chunking); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:929:13: required from here 929 | write_data(name + "/x_cell_dofs", x_cell_dofs, global_size, mpi_io); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1191:31: required from ‘void dolfin::HDF5File::write_mesh_value_collection(const dolfin::MeshValueCollection&, std::string) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ 1191 | HDF5Interface::add_attribute(_hdf5_file_id, name, "dimension", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1192 | mesh_values.dim()); | ~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1085:30: required from here 1085 | write_mesh_value_collection(mesh_values, name); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1257:31: required from ‘void dolfin::HDF5File::read_mesh_value_collection(dolfin::MeshValueCollection&, std::string) const [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ 1257 | HDF5Interface::get_attribute(_hdf5_file_id, name, "dimension", dim); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1091:29: required from here 1091 | read_mesh_value_collection(mesh_values, name); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:440:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 440 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’ 491 | add_attribute_value(dset_id, attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1191:31: required from ‘void dolfin::HDF5File::write_mesh_value_collection(const dolfin::MeshValueCollection&, std::string) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ 1191 | HDF5Interface::add_attribute(_hdf5_file_id, name, "dimension", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1192 | mesh_values.dim()); | ~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1085:30: required from here 1085 | write_mesh_value_collection(mesh_values, name); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:523:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 523 | herr_t status = H5Awrite(attribute_id, h5type, &attribute_value); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = long unsigned int; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:454:24: required from ‘static void dolfin::HDF5Interface::get_attribute(hid_t, std::string, std::string, T&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’ 454 | get_attribute_value(attr_type, attr_id, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1257:31: required from ‘void dolfin::HDF5File::read_mesh_value_collection(dolfin::MeshValueCollection&, std::string) const [with T = long unsigned int; std::string = std::__cxx11::basic_string]’ 1257 | HDF5Interface::get_attribute(_hdf5_file_id, name, "dimension", dim); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.cpp:1091:29: required from here 1091 | read_mesh_value_collection(mesh_values, name); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:615:12: warning: unused variable ‘status’ [-Wunused-variable] 615 | herr_t status = H5Aread(attr_id, h5type, &attribute_value); | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLFunctionData.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLFunctionData.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLFunctionData.cpp: In static member function ‘static void dolfin::XMLFunctionData::build_global_to_cell_dof(std::vector > >&, const dolfin::FunctionSpace&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLFunctionData.cpp:212:23: warning: unused variable ‘D’ [-Wunused-variable] 212 | const std::size_t D = mesh.topology().dim(); | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLFunctionData.cpp: In static member function ‘static void dolfin::XMLFunctionData::build_dof_map(std::vector >&, const dolfin::FunctionSpace&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLFunctionData.cpp:291:23: warning: unused variable ‘D’ [-Wunused-variable] 291 | const std::size_t D = mesh.topology().dim(); | ^ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 46%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/X3DOM.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/X3DOM.cpp.o -MF CMakeFiles/dolfin.dir/io/X3DOM.cpp.o.d -o CMakeFiles/dolfin.dir/io/X3DOM.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/X3DOM.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/X3DOM.cpp: In static member function ‘static void dolfin::X3DOM::add_menu_color_tab(pugi::xml_node&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/X3DOM.cpp:933:18: warning: variable ‘br_node’ set but not used [-Wunused-but-set-variable] 933 | pugi::xml_node br_node = xml_node.append_child("br"); | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 50%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLParameters.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLParameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 50%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLTable.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLTable.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLTable.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLTable.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLTable.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 50%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/xmlutils.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/xmlutils.cpp.o -MF CMakeFiles/dolfin.dir/io/xmlutils.cpp.o.d -o CMakeFiles/dolfin.dir/io/xmlutils.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/xmlutils.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLVector.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLVector.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLVector.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLVector.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/Amesos2LUSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/Amesos2LUSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/Amesos2LUSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/Amesos2LUSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/Amesos2LUSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/BelosKrylovSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/BelosKrylovSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/BelosKrylovSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/BelosKrylovSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/BelosKrylovSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XMLFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XMLFile.cpp.o -MF CMakeFiles/dolfin.dir/io/XMLFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/XMLFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLFile.cpp: In member function ‘void dolfin::XMLFile::load_xml_doc(pugi::xml_document&) const’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLFile.cpp:403:61: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 403 | const std::string extension = boost::filesystem::extension(path); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from /usr/include/boost/filesystem.hpp:21, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLFile.cpp:26: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLFile.cpp: In member function ‘void dolfin::XMLFile::save_xml_doc(const pugi::xml_document&) const’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XMLFile.cpp:467:63: warning: ‘std::string boost::filesystem::extension(const path&)’ is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 467 | const std::string extension = boost::filesystem::extension(path); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 51%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XYZFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XYZFile.cpp.o -MF CMakeFiles/dolfin.dir/io/XYZFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/XYZFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XYZFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 53%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/CoordinateMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/CoordinateMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 53%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/BlockMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/BlockMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 53%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/BlockVector.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/BlockVector.cpp.o -MF CMakeFiles/dolfin.dir/la/BlockVector.cpp.o.d -o CMakeFiles/dolfin.dir/la/BlockVector.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/BlockVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o -MF CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o.d -o CMakeFiles/dolfin.dir/la/DefaultFactory.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/DefaultFactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o -MF CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o.d -o CMakeFiles/dolfin.dir/la/EigenFactory.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/EigenFactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 48%] Building CXX object dolfin/CMakeFiles/dolfin.dir/io/XDMFFile.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/io/XDMFFile.cpp.o -MF CMakeFiles/dolfin.dir/io/XDMFFile.cpp.o.d -o CMakeFiles/dolfin.dir/io/XDMFFile.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5File.h:32, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:51: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In member function ‘void dolfin::XDMFFile::write_checkpoint(const dolfin::Function&, std::string, double, Encoding, bool)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:152:28: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 152 | pugi::xml_parse_result result = _xml_doc->load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:184:20: warning: variable ‘domain_node’ set but not used [-Wunused-but-set-variable] 184 | pugi::xml_node domain_node = xdmf_node.append_child("Domain"); | ^~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In member function ‘void dolfin::XDMFFile::write(const dolfin::Function&, double, Encoding)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:417:20: warning: variable ‘domain_node’ set but not used [-Wunused-but-set-variable] 417 | pugi::xml_node domain_node = xdmf_node.append_child("Domain"); | ^~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In static member function ‘static void dolfin::XDMFFile::add_function(MPI_Comm, pugi::xml_node&, hid_t, std::string, const dolfin::Function&, std::string, const dolfin::Mesh&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1268:30: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = plus; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 1268 | std::bind2nd(std::plus(), offset)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_function.h:1435, from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/iomanip:42, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:20: /usr/include/c++/14/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In member function ‘void dolfin::XDMFFile::read(dolfin::Mesh&) const’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1326:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 1326 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In member function ‘void dolfin::XDMFFile::read_checkpoint(dolfin::Function&, std::string, int64_t)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1445:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 1445 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In static member function ‘static void dolfin::XDMFFile::build_mesh_quadratic(dolfin::Mesh&, const dolfin::CellType&, int64_t, int64_t, int, int, const pugi::xml_node&, const pugi::xml_node&, const boost::filesystem::path&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1566:13: warning: unused variable ‘num_edges_per_cell’ [-Wunused-variable] 1566 | const int num_edges_per_cell = cell_type.num_entities(1); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of ‘void dolfin::XDMFFile::read_mesh_value_collection(dolfin::MeshValueCollection&, std::string) [with T = int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:778:29: required from here 778 | read_mesh_value_collection(mvc_int, name); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:806:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 806 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of ‘void dolfin::XDMFFile::read_mesh_value_collection(dolfin::MeshValueCollection&, std::string) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:792:29: required from here 792 | read_mesh_value_collection(mvc, name); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:806:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 806 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of ‘void dolfin::XDMFFile::read_mesh_value_collection(dolfin::MeshValueCollection&, std::string) [with T = double; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:797:29: required from here 797 | read_mesh_value_collection(mvc, name); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:806:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 806 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of ‘void dolfin::XDMFFile::read_mesh_function(dolfin::MeshFunction&, std::string) [with T = long unsigned int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1119:21: required from here 1119 | read_mesh_function(mf, name); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2435:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 2435 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2508:22: warning: unused variable ‘num_vertices_per_cell’ [-Wunused-variable] 2508 | const unsigned int num_vertices_per_cell = cell_type->num_entities(0); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of ‘void dolfin::XDMFFile::read_mesh_function(dolfin::MeshFunction&, std::string) [with T = int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1127:21: required from here 1127 | read_mesh_function(meshfunction, name); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2435:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 2435 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2508:22: warning: unused variable ‘num_vertices_per_cell’ [-Wunused-variable] 2508 | const unsigned int num_vertices_per_cell = cell_type->num_entities(0); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp: In instantiation of ‘void dolfin::XDMFFile::read_mesh_function(dolfin::MeshFunction&, std::string) [with T = double; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1137:21: required from here 1137 | read_mesh_function(meshfunction, name); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2435:26: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 2435 | pugi::xml_parse_result result = xml_doc.load_file(_filename.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2508:22: warning: unused variable ‘num_vertices_per_cell’ [-Wunused-variable] 2508 | const unsigned int num_vertices_per_cell = cell_type->num_entities(0); | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1941:33: required from ‘static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ 1941 | HDF5Interface::write_dataset(h5_id, h5_path, x, local_range, shape, use_mpi_io, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1942 | false); | ~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.h:606:18: required from here 606 | add_data_item(comm, xml_node, h5_id, h5_path, x_int, shape, number_type); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1949:33: required from ‘static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ 1949 | HDF5Interface::add_attribute(h5_id, h5_path, "partition", partitions); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.h:606:18: required from here 606 | add_data_item(comm, xml_node, h5_id, h5_path, x_int, shape, number_type); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:486:14: warning: unused variable ‘status’ [-Wunused-variable] 486 | herr_t status = H5Adelete(dset_id, attribute_name.c_str()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:494:12: warning: unused variable ‘status’ [-Wunused-variable] 494 | herr_t status = H5Oclose(dset_id); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1941:33: required from ‘static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ 1941 | HDF5Interface::write_dataset(h5_id, h5_path, x, local_range, shape, use_mpi_io, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1942 | false); | ~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:391:16: required from here 391 | add_data_item(_mpi_comm.comm(), attribute_node, h5_id, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 | "/VisualisationVector/0", data_values, {num_values, width}); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1941:33: required from ‘static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ 1941 | HDF5Interface::write_dataset(h5_id, h5_path, x, local_range, shape, use_mpi_io, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1942 | false); | ~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1293:16: required from here 1293 | add_data_item(mpi_comm, fe_attribute_node, h5_id, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1294 | h5_path + "/x_cell_dofs", x_cell_dofs, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | {num_x_cell_dofs_global, 1}, "UInt"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2363:32: required from ‘static std::vector dolfin::XDMFFile::get_dataset(MPI_Comm, const pugi::xml_node&, const boost::filesystem::path&, std::pair) [with T = long unsigned int; MPI_Comm = int]’ 2363 | HDF5Interface::read_dataset(h5_file.h5_id(), paths[1], range, data_vector); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1509:31: required from here 1509 | = get_dataset(_mpi_comm.comm(), cells_dataitem, parent_path); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2363:32: required from ‘static std::vector dolfin::XDMFFile::get_dataset(MPI_Comm, const pugi::xml_node&, const boost::filesystem::path&, std::pair) [with T = int; MPI_Comm = int]’ 2363 | HDF5Interface::read_dataset(h5_file.h5_id(), paths[1], range, data_vector); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1526:36: required from here 1526 | = get_dataset(_mpi_comm.comm(), cell_dofs_dataitem, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1527 | parent_path, | ~~~~~~~~~~~~ 1528 | std::make_pair(x_cell_dofs.front(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1529 | x_cell_dofs.back())); | ~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = double; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2363:32: required from ‘static std::vector dolfin::XDMFFile::get_dataset(MPI_Comm, const pugi::xml_node&, const boost::filesystem::path&, std::pair) [with T = double; MPI_Comm = int]’ 2363 | HDF5Interface::read_dataset(h5_file.h5_id(), paths[1], range, data_vector); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1541:26: required from here 1541 | = get_dataset(_mpi_comm.comm(), vector_dataitem, parent_path, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1542 | input_vector_range); | ~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::read_dataset(hid_t, std::string, std::pair, std::vector&) [with T = long int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:2363:32: required from ‘static std::vector dolfin::XDMFFile::get_dataset(MPI_Comm, const pugi::xml_node&, const boost::filesystem::path&, std::pair) [with T = long int; MPI_Comm = int]’ 2363 | HDF5Interface::read_dataset(h5_file.h5_id(), paths[1], range, data_vector); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1729:55: required from here 1729 | const auto topology_data = get_dataset(local_mesh_data.mpi_comm(), | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1730 | topology_dataset_node, | ~~~~~~~~~~~~~~~~~~~~~~ 1731 | relative_path); | ~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:384:15: warning: unused variable ‘ndims’ [-Wunused-variable] 384 | const int ndims = H5Sget_simple_extent_dims(dataspace, shape.data(), NULL); | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:400:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 400 | herr_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const std::vector&) [with T = long unsigned int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:491:24: required from ‘static void dolfin::HDF5Interface::add_attribute(hid_t, std::string, std::string, const T&) [with T = std::vector; hid_t = long int; std::string = std::__cxx11::basic_string]’ 491 | add_attribute_value(dset_id, attribute_name, attribute_value); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1949:33: required from ‘static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ 1949 | HDF5Interface::add_attribute(h5_id, h5_path, "partition", partitions); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.h:606:18: required from here 606 | add_data_item(comm, xml_node, h5_id, h5_path, x_int, shape, number_type); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:555:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 555 | herr_t status = H5Awrite(attribute_id, h5type, attribute_value.data()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In instantiation of ‘static void dolfin::HDF5Interface::write_dataset(hid_t, std::string, const std::vector&, std::pair, std::vector, bool, bool) [with T = long int; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1941:33: required from ‘static void dolfin::XDMFFile::add_data_item(MPI_Comm, pugi::xml_node&, hid_t, std::string, const T&, std::vector, std::string) [with T = std::vector; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ 1941 | HDF5Interface::write_dataset(h5_id, h5_path, x, local_range, shape, use_mpi_io, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1942 | false); | ~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1827:16: required from ‘static void dolfin::XDMFFile::add_topology_data(MPI_Comm, pugi::xml_node&, hid_t, std::string, const dolfin::Mesh&, int) [with T = long int; MPI_Comm = int; hid_t = long int; std::string = std::__cxx11::basic_string]’ 1827 | add_data_item(comm, topology_node, h5_id, h5_path, | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1828 | topology_data, shape, number_type); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/XDMFFile.cpp:1159:36: required from here 1159 | add_topology_data(comm, grid_node, h5_id, path_prefix, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1160 | mesh, tdim); | ~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:266:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 266 | herr_t status; | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 56%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/EigenMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/EigenMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 56%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/GenericLinearSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/GenericLinearSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 56%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenVector.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/EigenVector.cpp.o -MF CMakeFiles/dolfin.dir/la/EigenVector.cpp.o.d -o CMakeFiles/dolfin.dir/la/EigenVector.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/EigenVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o -MF CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o.d -o CMakeFiles/dolfin.dir/la/Ifpack2Preconditioner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/Ifpack2Preconditioner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/GenericMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/GenericMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/IndexMap.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/IndexMap.cpp.o -MF CMakeFiles/dolfin.dir/la/IndexMap.cpp.o.d -o CMakeFiles/dolfin.dir/la/IndexMap.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/IndexMap.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 59%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o -MF CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o.d -o CMakeFiles/dolfin.dir/la/LinearOperator.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/LinearOperator.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 57%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/KrylovSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/KrylovSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 59%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/LinearSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/LinearSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 60%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o -MF CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o.d -o CMakeFiles/dolfin.dir/la/MueluPreconditioner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/MueluPreconditioner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 59%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/LUSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/LUSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/LUSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/LUSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/LUSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 60%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScBaseMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScBaseMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 60%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScFactory.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScFactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/EigenLUSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/EigenLUSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 54%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/EigenKrylovSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/EigenKrylovSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScLinearOperator.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScLinearOperator.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 64%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScObject.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScObject.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScObject.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScObject.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScKrylovSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.cpp: In member function ‘void dolfin::PETScKrylovSolver::monitor(bool)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.cpp:500:77: warning: ‘PetscErrorCode KSPMonitorTrueResidualNorm(KSP, PetscInt, PetscReal, PetscViewerAndFormat*)’ is deprecated: Use "KSPMonitorTrueResidual()" (since version 3.15.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_15_0. [-Wdeprecated-declarations] 500 | (PetscErrorCode (*)(KSP,PetscInt,PetscReal,void*)) KSPMonitorTrueResidualNorm, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/petsc/petscsnes.h:6, from /usr/include/petsc/petscts.h:7, from /usr/include/petsc/petsc.h:31, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/common/SubSystemsManager.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScObject.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScBaseMatrix.h:37, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScMatrix.h:41, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/fem/PETScDMCollection.h:28, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.cpp:29: /usr/include/petsc/petscksp.h:485:96: note: declared here 485 | PETSC_DEPRECATED_FUNCTION(3, 15, 0, "KSPMonitorTrueResidual()", ) static inline PetscErrorCode KSPMonitorTrueResidualNorm(KSP ksp, PetscInt n, PetscReal rnorm, PetscViewerAndFormat *vf) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScLUSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScLUSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 64%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScOptions.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScOptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o -MF CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o.d -o CMakeFiles/dolfin.dir/la/SLEPcEigenSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/SLEPcEigenSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 62%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 64%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScPreconditioner.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScPreconditioner.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/solve.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/solve.cpp.o -MF CMakeFiles/dolfin.dir/la/solve.cpp.o.d -o CMakeFiles/dolfin.dir/la/solve.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 67%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TensorLayout.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/TensorLayout.cpp.o -MF CMakeFiles/dolfin.dir/la/TensorLayout.cpp.o.d -o CMakeFiles/dolfin.dir/la/TensorLayout.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/TensorLayout.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 67%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o -MF CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o.d -o CMakeFiles/dolfin.dir/la/TpetraFactory.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/TpetraFactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o -MF CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o.d -o CMakeFiles/dolfin.dir/la/TpetraMatrix.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/TpetraMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o -MF CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o.d -o CMakeFiles/dolfin.dir/la/TpetraVector.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/TpetraVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o -MF CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o.d -o CMakeFiles/dolfin.dir/la/TrilinosParameters.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/TrilinosParameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 67%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/test_nullspace.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/test_nullspace.cpp.o -MF CMakeFiles/dolfin.dir/la/test_nullspace.cpp.o.d -o CMakeFiles/dolfin.dir/la/test_nullspace.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/test_nullspace.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o -MF CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o.d -o CMakeFiles/dolfin.dir/la/SparsityPattern.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/SparsityPattern.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/SparsityPattern.cpp: In member function ‘void dolfin::SparsityPattern::insert_full_rows_local(const std::vector&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/SparsityPattern.cpp:261:21: warning: unused variable ‘ghosted_size0’ [-Wunused-variable] 261 | const std::size_t ghosted_size0 = | ^~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/SparsityPattern.cpp: In member function ‘void dolfin::SparsityPattern::apply()’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/SparsityPattern.cpp:384:21: warning: unused variable ‘proc_number’ [-Wunused-variable] 384 | const std::size_t proc_number = _mpi_comm.rank(); | ^~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 65%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/PETScVector.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/PETScVector.cpp.o -MF CMakeFiles/dolfin.dir/la/PETScVector.cpp.o.d -o CMakeFiles/dolfin.dir/la/PETScVector.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScVector.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 70%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Event.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/log/Event.cpp.o -MF CMakeFiles/dolfin.dir/log/Event.cpp.o.d -o CMakeFiles/dolfin.dir/log/Event.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/log/Event.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 68%] Building CXX object dolfin/CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o -MF CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o.d -o CMakeFiles/dolfin.dir/la/VectorSpaceBasis.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/VectorSpaceBasis.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/LogManager.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/log/LogManager.cpp.o -MF CMakeFiles/dolfin.dir/log/LogManager.cpp.o.d -o CMakeFiles/dolfin.dir/log/LogManager.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/log/LogManager.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 70%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/log.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/log/log.cpp.o -MF CMakeFiles/dolfin.dir/log/log.cpp.o.d -o CMakeFiles/dolfin.dir/log/log.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/log/log.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Progress.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/log/Progress.cpp.o -MF CMakeFiles/dolfin.dir/log/Progress.cpp.o.d -o CMakeFiles/dolfin.dir/log/Progress.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/log/Progress.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/LogStream.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/log/LogStream.cpp.o -MF CMakeFiles/dolfin.dir/log/LogStream.cpp.o.d -o CMakeFiles/dolfin.dir/log/LogStream.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/log/LogStream.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 73%] Building CXX object dolfin/CMakeFiles/dolfin.dir/math/basic.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/math/basic.cpp.o -MF CMakeFiles/dolfin.dir/math/basic.cpp.o.d -o CMakeFiles/dolfin.dir/math/basic.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/math/basic.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 70%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Logger.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/log/Logger.cpp.o -MF CMakeFiles/dolfin.dir/log/Logger.cpp.o.d -o CMakeFiles/dolfin.dir/log/Logger.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/log/Logger.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 73%] Building CXX object dolfin/CMakeFiles/dolfin.dir/math/Lagrange.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/math/Lagrange.cpp.o -MF CMakeFiles/dolfin.dir/math/Lagrange.cpp.o.d -o CMakeFiles/dolfin.dir/math/Lagrange.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/math/Lagrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 73%] Building CXX object dolfin/CMakeFiles/dolfin.dir/math/Legendre.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/math/Legendre.cpp.o -MF CMakeFiles/dolfin.dir/math/Legendre.cpp.o.d -o CMakeFiles/dolfin.dir/math/Legendre.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/math/Legendre.cpp In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/legendre.hpp:16, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/math/Legendre.cpp:24: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 71%] Building CXX object dolfin/CMakeFiles/dolfin.dir/log/Table.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/log/Table.cpp.o -MF CMakeFiles/dolfin.dir/log/Table.cpp.o.d -o CMakeFiles/dolfin.dir/log/Table.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/log/Table.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 75%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o -MF CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/BoundaryMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/BoundaryMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 75%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Cell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Cell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/Cell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/Cell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/Cell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/CellType.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/CellType.cpp.o -MF CMakeFiles/dolfin.dir/mesh/CellType.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/CellType.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/CellType.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 75%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o -MF CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/BoundaryComputation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/BoundaryComputation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o -MF CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/DynamicMeshEditor.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/DynamicMeshEditor.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Edge.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Edge.cpp.o -MF CMakeFiles/dolfin.dir/mesh/Edge.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/Edge.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/Edge.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 78%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Face.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Face.cpp.o -MF CMakeFiles/dolfin.dir/mesh/Face.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/Face.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/Face.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 78%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/FacetCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/FacetCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 78%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Facet.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Facet.cpp.o -MF CMakeFiles/dolfin.dir/mesh/Facet.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/Facet.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/Facet.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/HexahedronCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/HexahedronCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/IntervalCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/IntervalCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 76%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o -MF CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/DistributedMeshTools.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/DistributedMeshTools.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 81%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshConnectivity.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshConnectivity.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o -MF CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/LocalMeshData.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/LocalMeshData.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 79%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshColoring.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshColoring.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshDomains.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshDomains.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 81%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshData.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshData.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshEntity.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshEntity.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshFunction.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 82%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshEditor.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshEditor.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 81%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o -MF CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/Mesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/Mesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 84%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshGeometry.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshGeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 84%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshOrdering.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshOrdering.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshQuality.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshQuality.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshQuality.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshQuality.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshQuality.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 84%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshHierarchy.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshHierarchy.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshRenumbering.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp: In static member function ‘static dolfin::Mesh dolfin::MeshRenumbering::renumber_by_color(const dolfin::Mesh&, std::vector)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp:149:42: warning: variable ‘insert’ set but not used [-Wunused-but-set-variable] 149 | std::pair insert | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp: In static member function ‘static void dolfin::MeshRenumbering::compute_renumbering(const dolfin::Mesh&, const std::vector&, std::vector&, std::vector&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp:167:21: warning: unused variable ‘num_cells’ [-Wunused-variable] 167 | const std::size_t num_cells = mesh.num_cells(); | ^~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshRenumbering.cpp:204:35: warning: unused variable ‘colors_old’ [-Wunused-variable] 204 | const std::vector& colors_old = mesh_coloring->second.first; | ^~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 87%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshTransformation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshTransformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 87%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshTopology.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshTopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshSmoothing.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshSmoothing.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 85%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MeshPartitioning.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshPartitioning.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshPartitioning.cpp: In static member function ‘static int32_t dolfin::MeshPartitioning::distribute_cells(MPI_Comm, const dolfin::LocalMeshData&, const std::vector&, const std::map >&, boost::multi_array&, std::vector&, std::vector&, std::map >&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshPartitioning.cpp:727:21: warning: unused variable ‘num_local_cells’ [-Wunused-variable] 727 | const std::size_t num_local_cells = mesh_data.topology.cell_vertices.size(); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/PointCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/PointCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o -MF CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/PeriodicBoundaryComputation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/PeriodicBoundaryComputation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/QuadrilateralCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/QuadrilateralCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 89%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o -MF CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/SubDomain.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/SubDomain.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 87%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o -MF CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/MultiMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp: In member function ‘void dolfin::MultiMesh::_build_quadrature_rules_overlap(std::size_t)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:778:55: warning: loop variable ‘cutting’ creates a copy from type ‘const std::pair’ [-Wrange-loop-construct] 778 | for (const std::pair cutting : cutting_cells) | ^~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:778:55: note: use reference type to prevent copying 778 | for (const std::pair cutting : cutting_cells) | ^~~~~~~ | & /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp: In member function ‘void dolfin::MultiMesh::_build_quadrature_rules_interface(std::size_t)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:931:21: warning: loop variable ‘cut_i’ creates a copy from type ‘const std::pair > >’ [-Wrange-loop-construct] 931 | for (const auto cut_i: cmap) | ^~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:931:21: note: use reference type to prevent copying 931 | for (const auto cut_i: cmap) | ^~~~~ | & /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:995:25: warning: loop variable ‘boundary_cell_index_j’ creates a copy from type ‘const std::pair’ [-Wrange-loop-construct] 995 | for (const auto boundary_cell_index_j: full_to_bdry[cutting_part_j][cutting_cell_index_j]) | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MultiMesh.cpp:995:25: note: use reference type to prevent copying 995 | for (const auto boundary_cell_index_j: full_to_bdry[cutting_part_j][cutting_cell_index_j]) | ^~~~~~~~~~~~~~~~~~~~~ | & make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 90%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o -MF CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/SubMesh.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/SubMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 90%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/TetrahedronCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/TetrahedronCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 92%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o -MF CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/TriangleCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 92%] Building CXX object dolfin/CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o -MF CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o.d -o CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp: In member function ‘void dolfin::MultiStageScheme::_check_arguments()’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp:228:23: warning: loop variable ‘bc’ creates a copy from type ‘const std::shared_ptr’ [-Wrange-loop-construct] 228 | for (const auto bc: _bcs) | ^~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp:228:23: note: use reference type to prevent copying 228 | for (const auto bc: _bcs) | ^~ | & /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp:260:23: warning: loop variable ‘bc’ creates a copy from type ‘const std::shared_ptr’ [-Wrange-loop-construct] 260 | for (const auto bc: _bcs) | ^~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/multistage/MultiStageScheme.cpp:260:23: note: use reference type to prevent copying 260 | for (const auto bc: _bcs) | ^~ | & make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 93%] Building CXX object dolfin/CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o -MF CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o.d -o CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/multistage/RKSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 90%] Building CXX object dolfin/CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o -MF CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o.d -o CMakeFiles/dolfin.dir/mesh/TopologyComputation.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/TopologyComputation.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 93%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o -MF CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o.d -o CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/NewtonSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 92%] Building CXX object dolfin/CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o -MF CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o.d -o CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/multistage/PointIntegralSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 95%] Building CXX object dolfin/CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o -MF CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o.d -o CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/GlobalParameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 93%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o -MF CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o.d -o CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScSNESSolver.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScSNESSolver.cpp: In member function ‘void dolfin::PETScSNESSolver::set_linear_solver_parameters()’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScSNESSolver.cpp:520:79: warning: ‘PetscErrorCode KSPMonitorTrueResidualNorm(KSP, PetscInt, PetscReal, PetscViewerAndFormat*)’ is deprecated: Use "KSPMonitorTrueResidual()" (since version 3.15.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_15_0. [-Wdeprecated-declarations] 520 | (PetscErrorCode (*)(KSP,PetscInt,PetscReal,void*)) KSPMonitorTrueResidualNorm, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.h:31, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScSNESSolver.cpp:35: /usr/include/petsc/petscksp.h:485:96: note: declared here 485 | PETSC_DEPRECATED_FUNCTION(3, 15, 0, "KSPMonitorTrueResidual()", ) static inline PetscErrorCode KSPMonitorTrueResidualNorm(KSP ksp, PetscInt n, PetscReal rnorm, PetscViewerAndFormat *vf) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 93%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o -MF CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o.d -o CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp: In constructor ‘dolfin::PETScTAOSolver::PETScTAOSolver(MPI_Comm, std::string, std::string, std::string)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:99:30: warning: ‘PetscErrorCode TaoSetHessianRoutine(Tao, Mat, Mat, PetscErrorCode (*)(Tao, Vec, Mat, Mat, void*), void*)’ is deprecated: Use "TaoSetHessian()" (since version 3.17.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_17_0. [-Wdeprecated-declarations] 99 | ierr = TaoSetHessianRoutine(_tao, _matH.mat(), _matP.mat(), nullptr, nullptr); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/petsc/petsctao.h:514, from /usr/include/petsc/petsc.h:32, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/common/SubSystemsManager.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScObject.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.h:34, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:31: /usr/include/petsc/petsctao_deprecations.h:26:87: note: declared here 26 | PETSC_DEPRECATED_FUNCTION(3, 17, 0, "TaoSetHessian()", ) static inline PetscErrorCode TaoSetHessianRoutine(Tao t, Mat H, Mat P, PetscErrorCode (*f)(Tao, Vec, Mat, Mat, void *), void *c) | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp: In member function ‘void dolfin::PETScTAOSolver::init(dolfin::OptimisationProblem&, dolfin::PETScVector&, const dolfin::PETScVector&, const dolfin::PETScVector&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:226:29: warning: ‘PetscErrorCode TaoSetInitialVector(Tao, Vec)’ is deprecated: Use "TaoSetSolution()" (since version 3.17.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_17_0. [-Wdeprecated-declarations] 226 | ierr = TaoSetInitialVector(_tao, x.vec()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/petsc/petsctao_deprecations.h:2:88: note: declared here 2 | PETSC_DEPRECATED_FUNCTION(3, 17, 0, "TaoSetSolution()", ) static inline PetscErrorCode TaoSetInitialVector(Tao t, Vec v) | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:237:43: warning: ‘PetscErrorCode TaoSetObjectiveAndGradientRoutine(Tao, PetscErrorCode (*)(Tao, Vec, PetscReal*, Vec, void*), void*)’ is deprecated: Use "TaoSetObjectiveAndGradient()" (since version 3.17.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_17_0. [-Wdeprecated-declarations] 237 | ierr = TaoSetObjectiveAndGradientRoutine(_tao, FormFunctionGradient, &_tao_ctx); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/petsc/petsctao_deprecations.h:22:100: note: declared here 22 | PETSC_DEPRECATED_FUNCTION(3, 17, 0, "TaoSetObjectiveAndGradient()", ) static inline PetscErrorCode TaoSetObjectiveAndGradientRoutine(Tao t, PetscErrorCode (*f)(Tao, Vec, PetscReal *, Vec, void *), void *c) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:239:30: warning: ‘PetscErrorCode TaoSetHessianRoutine(Tao, Mat, Mat, PetscErrorCode (*)(Tao, Vec, Mat, Mat, void*), void*)’ is deprecated: Use "TaoSetHessian()" (since version 3.17.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_17_0. [-Wdeprecated-declarations] 239 | ierr = TaoSetHessianRoutine(_tao, nullptr, nullptr, FormHessian, &_tao_ctx); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/petsc/petsctao_deprecations.h:26:87: note: declared here 26 | PETSC_DEPRECATED_FUNCTION(3, 17, 0, "TaoSetHessian()", ) static inline PetscErrorCode TaoSetHessianRoutine(Tao t, Mat H, Mat P, PetscErrorCode (*f)(Tao, Vec, Mat, Mat, void *), void *c) | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:243:27: warning: ‘PetscErrorCode TaoCancelMonitors(Tao)’ is deprecated: Use "TaoMonitorCancel()" (since version 3.21.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_21_0. [-Wdeprecated-declarations] 243 | ierr = TaoCancelMonitors(_tao); | ~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/petsc/petsctao_deprecations.h:46:90: note: declared here 46 | PETSC_DEPRECATED_FUNCTION(3, 21, 0, "TaoMonitorCancel()", ) static inline PetscErrorCode TaoCancelMonitors(Tao tao) | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:249:25: warning: ‘PetscErrorCode TaoSetMonitor(Tao, PetscErrorCode (*)(Tao, void*), void*, PetscErrorCode (*)(void**))’ is deprecated: Use "TaoMonitorSet()" (since version 3.21.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_21_0. [-Wdeprecated-declarations] 249 | ierr = TaoSetMonitor(_tao, | ~~~~~~~~~~~~~^~~~~~ 250 | #if PETSC_VERSION_MAJOR == 3 && PETSC_VERSION_MINOR <= 8 && PETSC_VERSION_RELEASE == 1 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 | TaoDefaultMonitor, | ~~~~~~~~~~~~~~~~~~ 252 | #else | ~~~~~ 253 | TaoMonitorDefault, | ~~~~~~~~~~~~~~~~~~ 254 | #endif | ~~~~~~ 255 | PETSC_VIEWER_STDOUT_(PetscObjectComm((PetscObject)_tao)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 | NULL); | ~~~~~ /usr/include/petsc/petsctao_deprecations.h:42:87: note: declared here 42 | PETSC_DEPRECATED_FUNCTION(3, 21, 0, "TaoMonitorSet()", ) static inline PetscErrorCode TaoSetMonitor(Tao tao, PetscErrorCode (*monitor)(Tao, void *), void *ctx, PetscErrorCode (*destroy)(void **)) | ^~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp: In static member function ‘static PetscErrorCode dolfin::PETScTAOSolver::FormHessian(Tao, Vec, Mat, Mat, void*)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:391:47: warning: ‘PetscErrorCode TaoSetHessianRoutine(Tao, Mat, Mat, PetscErrorCode (*)(Tao, Vec, Mat, Mat, void*), void*)’ is deprecated: Use "TaoSetHessian()" (since version 3.17.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_17_0. [-Wdeprecated-declarations] 391 | PetscErrorCode ierr = TaoSetHessianRoutine(tao, nullptr, H, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 392 | nullptr, nullptr); | ~~~~~~~~~~~~~~~~~ /usr/include/petsc/petsctao_deprecations.h:26:87: note: declared here 26 | PETSC_DEPRECATED_FUNCTION(3, 17, 0, "TaoSetHessian()", ) static inline PetscErrorCode TaoSetHessianRoutine(Tao t, Mat H, Mat P, PetscErrorCode (*f)(Tao, Vec, Mat, Mat, void *), void *c) | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp: In member function ‘void dolfin::PETScTAOSolver::set_ksp_options()’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/PETScTAOSolver.cpp:580:77: warning: ‘PetscErrorCode KSPMonitorTrueResidualNorm(KSP, PetscInt, PetscReal, PetscViewerAndFormat*)’ is deprecated: Use "KSPMonitorTrueResidual()" (since version 3.15.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_15_0. [-Wdeprecated-declarations] 580 | (PetscErrorCode (*)(KSP,PetscInt,PetscReal,void*)) KSPMonitorTrueResidualNorm, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScKrylovSolver.h:31: /usr/include/petsc/petscksp.h:485:96: note: declared here 485 | PETSC_DEPRECATED_FUNCTION(3, 15, 0, "KSPMonitorTrueResidual()", ) static inline PetscErrorCode KSPMonitorTrueResidualNorm(KSP ksp, PetscInt n, PetscReal rnorm, PetscViewerAndFormat *vf) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 95%] Building CXX object dolfin/CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o -MF CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o.d -o CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp: In member function ‘std::size_t dolfin::TAOLinearBoundSolver::solve(const dolfin::PETScMatrix&, dolfin::PETScVector&, const dolfin::PETScVector&, const dolfin::PETScVector&, const dolfin::PETScVector&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:175:29: warning: ‘PetscErrorCode TaoSetInitialVector(Tao, Vec)’ is deprecated: Use "TaoSetSolution()" (since version 3.17.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_17_0. [-Wdeprecated-declarations] 175 | ierr = TaoSetInitialVector(_tao, x.vec()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ In file included from /usr/include/petsc/petsctao.h:514, from /usr/include/petsc/petsc.h:32, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/common/SubSystemsManager.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScObject.h:24, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScBaseMatrix.h:37, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/la/PETScMatrix.h:41, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:29: /usr/include/petsc/petsctao_deprecations.h:2:88: note: declared here 2 | PETSC_DEPRECATED_FUNCTION(3, 17, 0, "TaoSetSolution()", ) static inline PetscErrorCode TaoSetInitialVector(Tao t, Vec v) | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:184:43: warning: ‘PetscErrorCode TaoSetObjectiveAndGradientRoutine(Tao, PetscErrorCode (*)(Tao, Vec, PetscReal*, Vec, void*), void*)’ is deprecated: Use "TaoSetObjectiveAndGradient()" (since version 3.17.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_17_0. [-Wdeprecated-declarations] 184 | ierr = TaoSetObjectiveAndGradientRoutine(_tao, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ 185 | __TAOFormFunctionGradientQuadraticProblem, this); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/petsc/petsctao_deprecations.h:22:100: note: declared here 22 | PETSC_DEPRECATED_FUNCTION(3, 17, 0, "TaoSetObjectiveAndGradient()", ) static inline PetscErrorCode TaoSetObjectiveAndGradientRoutine(Tao t, PetscErrorCode (*f)(Tao, Vec, PetscReal *, Vec, void *), void *c) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:188:30: warning: ‘PetscErrorCode TaoSetHessianRoutine(Tao, Mat, Mat, PetscErrorCode (*)(Tao, Vec, Mat, Mat, void*), void*)’ is deprecated: Use "TaoSetHessian()" (since version 3.17.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_17_0. [-Wdeprecated-declarations] 188 | ierr = TaoSetHessianRoutine(_tao, A->mat(), A->mat(), | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | __TAOFormHessianQuadraticProblem, this); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/petsc/petsctao_deprecations.h:26:87: note: declared here 26 | PETSC_DEPRECATED_FUNCTION(3, 17, 0, "TaoSetHessian()", ) static inline PetscErrorCode TaoSetHessianRoutine(Tao t, Mat H, Mat P, PetscErrorCode (*f)(Tao, Vec, Mat, Mat, void *), void *c) | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:196:27: warning: ‘PetscErrorCode TaoCancelMonitors(Tao)’ is deprecated: Use "TaoMonitorCancel()" (since version 3.21.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_21_0. [-Wdeprecated-declarations] 196 | ierr = TaoCancelMonitors(_tao); | ~~~~~~~~~~~~~~~~~^~~~~~ /usr/include/petsc/petsctao_deprecations.h:46:90: note: declared here 46 | PETSC_DEPRECATED_FUNCTION(3, 21, 0, "TaoMonitorCancel()", ) static inline PetscErrorCode TaoCancelMonitors(Tao tao) | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:204:27: warning: ‘PetscErrorCode TaoSetMonitor(Tao, PetscErrorCode (*)(Tao, void*), void*, PetscErrorCode (*)(void**))’ is deprecated: Use "TaoMonitorSet()" (since version 3.21.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_21_0. [-Wdeprecated-declarations] 204 | ierr = TaoSetMonitor(_tao, __TAOMonitor, this, NULL); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/petsc/petsctao_deprecations.h:42:87: note: declared here 42 | PETSC_DEPRECATED_FUNCTION(3, 21, 0, "TaoMonitorSet()", ) static inline PetscErrorCode TaoSetMonitor(Tao tao, PetscErrorCode (*monitor)(Tao, void *), void *ctx, PetscErrorCode (*destroy)(void **)) | ^~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp: In member function ‘void dolfin::TAOLinearBoundSolver::set_ksp_options()’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:416:86: warning: ‘PetscErrorCode KSPMonitorTrueResidualNorm(KSP, PetscInt, PetscReal, PetscViewerAndFormat*)’ is deprecated: Use "KSPMonitorTrueResidual()" (since version 3.15.0) instead. Silence this warning (as well as all others for this version) by defining PETSC_SILENCE_DEPRECATION_WARNINGS_3_15_0. [-Wdeprecated-declarations] 416 | ierr = KSPMonitorSet(ksp, (PetscErrorCode (*)(KSP,PetscInt,PetscReal,void*)) KSPMonitorTrueResidualNorm, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/petsc/petscsnes.h:6, from /usr/include/petsc/petscts.h:7, from /usr/include/petsc/petsc.h:31: /usr/include/petsc/petscksp.h:485:96: note: declared here 485 | PETSC_DEPRECATED_FUNCTION(3, 15, 0, "KSPMonitorTrueResidual()", ) static inline PetscErrorCode KSPMonitorTrueResidualNorm(KSP ksp, PetscInt n, PetscReal rnorm, PetscViewerAndFormat *vf) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp: In static member function ‘static PetscErrorCode dolfin::TAOLinearBoundSolver::__TAOMonitor(Tao, void*)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:510:54: warning: unknown conversion type character ‘\x09’ in format [-Wformat=] 510 | ierr = PetscPrintf(PETSC_COMM_WORLD,"iteration=%D\tf=%g\n", its, (double)f); | ^~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:510:59: warning: format ‘%g’ expects argument of type ‘double’, but argument 3 has type ‘PetscInt’ {aka ‘int’} [-Wformat=] 510 | ierr = PetscPrintf(PETSC_COMM_WORLD,"iteration=%D\tf=%g\n", its, (double)make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' f); | ~^ ~~~ | | | | | PetscInt {aka int} | double | %d /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/nls/TAOLinearBoundSolver.cpp:510:41: warning: too many arguments for format [-Wformat-extra-args] 510 | ierr = PetscPrintf(PETSC_COMM_WORLD,"iteration=%D\tf=%g\n", its, (double)f); | ^~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 96%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o -MF CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/refinement/BisectionRefinement1D.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 95%] Building CXX object dolfin/CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o -MF CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o.d -o CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.cpp In file included from /usr/include/c++/14/set:62, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.h:22, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.cpp:21: In member function ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_assign(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_tree.h:1740:21, inlined from ‘std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_set.h:304:7, inlined from ‘boost::detail::variant::move_storage::internal_visit, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, int) constvoid’ at /usr/include/boost/variant/variant.hpp:597:21, inlined from ‘boost::detail::variant::visitation_impl_invoke_impl, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, mpl_::bool_)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from ‘boost::detail::variant::visitation_impl_invoke, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, int)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from ‘boost::detail::variant::visitation_impl, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >, boost::detail::variant::move_storage, void*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, int, boost::detail::variant::move_storage&, void*, mpl_::bool_, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, mpl_::int_<0>*, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor_impl(int, int, boost::detail::variant::move_storage&, void*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2338:48, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor(boost::detail::variant::move_storage&)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2350:43, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::variant_assign(boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&&)’ at /usr/include/boost/variant/variant.hpp:2081:41, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2127:27, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2114:10, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::operator= >(std::array&&)boost::enable_if&&>, boost::mpl::not_ > >, boost::detail::variant::is_variant_constructible_from&&, boost::mpl::l_item, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, mpl_::bool_, mpl_::bool_ >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&>::type’ at /usr/include/boost/variant/variant.hpp:2146:20, inlined from ‘dolfin::Parameter::set_range(int, int)’ at /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.cpp:100:57: /usr/include/c++/14/bits/stl_tree.h:1705:25: warning: ‘MEM[(struct _Rb_tree_node_base * &)&temp + 24]’ may be used uninitialized [-Wmaybe-uninitialized] 1705 | if (__x._M_root() != nullptr) | ~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /usr/include/boost/variant.hpp:17, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.h:26: /usr/include/boost/variant/variant.hpp: In member function ‘dolfin::Parameter::set_range(int, int)’: /usr/include/boost/variant/variant.hpp:2126:21: note: ‘temp’ declared here 2126 | variant temp( detail::variant::move(rhs) ); | ^~~~ In member function ‘std::_Rb_tree_header::_M_move_data(std::_Rb_tree_header&)’, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_data(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1417:29, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_assign(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1706:14, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_tree.h:1740:21, inlined from ‘std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_set.h:304:7, inlined from ‘boost::detail::variant::move_storage::internal_visit, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, int) constvoid’ at /usr/include/boost/variant/variant.hpp:597:21, inlined from ‘boost::detail::variant::visitation_impl_invoke_impl, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, mpl_::bool_)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from ‘boost::detail::variant::visitation_impl_invoke, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, int)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from ‘boost::detail::variant::visitation_impl, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >, boost::detail::variant::move_storage, void*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, int, boost::detail::variant::move_storage&, void*, mpl_::bool_, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, mpl_::int_<0>*, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor_impl(int, int, boost::detail::variant::move_storage&, void*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2338:48, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor(boost::detail::variant::move_storage&)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2350:43, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::variant_assign(boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&&)’ at /usr/include/boost/variant/variant.hpp:2081:41, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2127:27, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2114:10, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::operator= >(std::array&&)boost::enable_if&&>, boost::mpl::not_ > >, boost::detail::variant::is_variant_constructible_from&&, boost::mpl::l_item, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, mpl_::bool_, mpl_::bool_ >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&>::type’ at /usr/include/boost/variant/variant.hpp:2146:20, inlined from ‘dolfin::Parameter::set_range(int, int)’ at /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.cpp:100:57: /usr/include/c++/14/bits/stl_tree.h:191:45: warning: ‘MEM[(struct _Rb_tree_header &)&temp + 16]._M_header._M_color’ may be used uninitialized [-Wmaybe-uninitialized] 191 | _M_header._M_color = __from._M_header._M_color; | ~~~~~~~~~~~~~~~~~^~~~~~~~ /usr/include/boost/variant/variant.hpp: In member function ‘dolfin::Parameter::set_range(int, int)’: /usr/include/boost/variant/variant.hpp:2126:21: note: ‘temp’ declared here 2126 | variant temp( detail::variant::move(rhs) ); | ^~~~ In member function ‘std::_Rb_tree_header::_M_move_data(std::_Rb_tree_header&)’, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_data(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1417:29, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_assign(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1706:14, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_tree.h:1740:21, inlined from ‘std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_set.h:304:7, inlined from ‘boost::detail::variant::move_storage::internal_visit, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, int) constvoid’ at /usr/include/boost/variant/variant.hpp:597:21, inlined from ‘boost::detail::variant::visitation_impl_invoke_impl, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, mpl_::bool_)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from ‘boost::detail::variant::visitation_impl_invoke, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, int)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from ‘boost::detail::variant::visitation_impl, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >, boost::detail::variant::move_storage, void*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, int, boost::detail::variant::move_storage&, void*, mpl_::bool_, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, mpl_::int_<0>*, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor_impl(int, int, boost::detail::variant::move_storage&, void*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2338:48, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor(boost::detail::variant::move_storage&)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2350:43, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::variant_assign(boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&&)’ at /usr/include/boost/variant/variant.hpp:2081:41, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2127:27, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2114:10, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::operator= >(std::array&&)boost::enable_if&&>, boost::mpl::not_ > >, boost::detail::variant::is_variant_constructible_from&&, boost::mpl::l_item, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, mpl_::bool_, mpl_::bool_ >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&>::type’ at /usr/include/boost/variant/variant.hpp:2146:20, inlined from ‘dolfin::Parameter::set_range(int, int)’ at /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.cpp:100:57: /usr/include/c++/14/bits/stl_tree.h:193:44: warning: ‘MEM[(struct _Rb_tree_header &)&temp + 16]._M_header._M_left’ may be used uninitialized [-Wmaybe-uninitialized] 193 | _M_header._M_left = __from._M_header._M_left; | ~~~~~~~~~~~~~~~~~^~~~~~~ /usr/include/boost/variant/variant.hpp: In member function ‘dolfin::Parameter::set_range(int, int)’: /usr/include/boost/variant/variant.hpp:2126:21: note: ‘temp’ declared here 2126 | variant temp( detail::variant::move(rhs) ); | ^~~~ In member function ‘std::_Rb_tree_header::_M_move_data(std::_Rb_tree_header&)’, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_data(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1417:29, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_assign(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1706:14, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_tree.h:1740:21, inlined from ‘std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_set.h:304:7, inlined from ‘boost::detail::variant::move_storage::internal_visit, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, int) constvoid’ at /usr/include/boost/variant/variant.hpp:597:21, inlined from ‘boost::detail::variant::visitation_impl_invoke_impl, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, mpl_::bool_)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from ‘boost::detail::variant::visitation_impl_invoke, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, int)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from ‘boost::detail::variant::visitation_impl, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >, boost::detail::variant::move_storage, void*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, int, boost::detail::variant::move_storage&, void*, mpl_::bool_, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, mpl_::int_<0>*, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor_impl(int, int, boost::detail::variant::move_storage&, void*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2338:48, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor(boost::detail::variant::move_storage&)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2350:43, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::variant_assign(boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&&)’ at /usr/include/boost/variant/variant.hpp:2081:41, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2127:27, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2114:10, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::operator= >(std::array&&)boost::enable_if&&>, boost::mpl::not_ > >, boost::detail::variant::is_variant_constructible_from&&, boost::mpl::l_item, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, mpl_::bool_, mpl_::bool_ >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&>::type’ at /usr/include/boost/variant/variant.hpp:2146:20, inlined from ‘dolfin::Parameter::set_range(int, int)’ at /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.cpp:100:57: /usr/include/c++/14/bits/stl_tree.h:194:45: warning: ‘MEM[(struct _Rb_tree_header &)&temp + 16]._M_header._M_right’ may be used uninitialized [-Wmaybe-uninitialized] 194 | _M_header._M_right = __from._M_header._M_right; | ~~~~~~~~~~~~~~~~~^~~~~~~~ /usr/include/boost/variant/variant.hpp: In member function ‘dolfin::Parameter::set_range(int, int)’: /usr/include/boost/variant/variant.hpp:2126:21: note: ‘temp’ declared here 2126 | variant temp( detail::variant::move(rhs) ); | ^~~~ In member function ‘std::_Rb_tree_header::_M_move_data(std::_Rb_tree_header&)’, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_data(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1417:29, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_assign(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1706:14, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_tree.h:1740:21, inlined from ‘std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_set.h:304:7, inlined from ‘boost::detail::variant::move_storage::internal_visit, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, int) constvoid’ at /usr/include/boost/variant/variant.hpp:597:21, inlined from ‘boost::detail::variant::visitation_impl_invoke_impl, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, mpl_::bool_)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from ‘boost::detail::variant::visitation_impl_invoke, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, int)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from ‘boost::detail::variant::visitation_impl, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >, boost::detail::variant::move_storage, void*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, int, boost::detail::variant::move_storage&, void*, mpl_::bool_, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, mpl_::int_<0>*, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor_impl(int, int, boost::detail::variant::move_storage&, void*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2338:48, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor(boost::detail::variant::move_storage&)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2350:43, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::variant_assign(boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&&)’ at /usr/include/boost/variant/variant.hpp:2081:41, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2127:27, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2114:10, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::operator= >(std::array&&)boost::enable_if&&>, boost::mpl::not_ > >, boost::detail::variant::is_variant_constructible_from&&, boost::mpl::l_item, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, mpl_::bool_, mpl_::bool_ >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&>::type’ at /usr/include/boost/variant/variant.hpp:2146:20, inlined from ‘dolfin::Parameter::set_range(int, int)’ at /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.cpp:100:57: /usr/include/c++/14/bits/stl_tree.h:196:30: warning: ‘MEM[(struct _Rb_tree_header &)&temp + 16]._M_node_count’ may be used uninitialized [-Wmaybe-uninitialized] 196 | _M_node_count = __from._M_node_count; | ~~~~~~~^~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In member function ‘dolfin::Parameter::set_range(int, int)’: /usr/include/boost/variant/variant.hpp:2126:21: note: ‘temp’ declared here 2126 | variant temp( detail::variant::move(rhs) ); | ^~~~ In member function ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_assign(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_tree.h:1740:21, inlined from ‘std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_set.h:304:7, inlined from ‘boost::detail::variant::move_storage::internal_visit, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, int) constvoid’ at /usr/include/boost/variant/variant.hpp:597:21, inlined from ‘boost::detail::variant::visitation_impl_invoke_impl, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, mpl_::bool_)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from ‘boost::detail::variant::visitation_impl_invoke, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, int)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from ‘boost::detail::variant::visitation_impl, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >, boost::detail::variant::move_storage, void*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, int, boost::detail::variant::move_storage&, void*, mpl_::bool_, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, mpl_::int_<0>*, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor_impl(int, int, boost::detail::variant::move_storage&, void*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2338:48, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor(boost::detail::variant::move_storage&)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2350:43, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::variant_assign(boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&&)’ at /usr/include/boost/variant/variant.hpp:2081:41, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2127:27, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2114:10, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::operator= >(std::array&&)boost::enable_if&&>, boost::mpl::not_ > >, boost::detail::variant::is_variant_constructible_from&&, boost::mpl::l_item, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, mpl_::bool_, mpl_::bool_ >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&>::type’ at /usr/include/boost/variant/variant.hpp:2146:20, inlined from ‘dolfin::Parameter::set_range(double, double)’ at /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.cpp:113:60: /usr/include/c++/14/bits/stl_tree.h:1705:25: warning: ‘MEM[(struct _Rb_tree_node_base * &)&temp + 24]’ may be used uninitialized [-Wmaybe-uninitialized] 1705 | if (__x._M_root() != nullptr) | ~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In member function ‘dolfin::Parameter::set_range(double, double)’: /usr/include/boost/variant/variant.hpp:2126:21: note: ‘temp’ declared here 2126 | variant temp( detail::variant::move(rhs) ); | ^~~~ In member function ‘std::_Rb_tree_header::_M_move_data(std::_Rb_tree_header&)’, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_data(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1417:29, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_assign(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1706:14, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_tree.h:1740:21, inlined from ‘std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_set.h:304:7, inlined from ‘boost::detail::variant::move_storage::internal_visit, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, int) constvoid’ at /usr/include/boost/variant/variant.hpp:597:21, inlined from ‘boost::detail::variant::visitation_impl_invoke_impl, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, mpl_::bool_)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from ‘boost::detail::variant::visitation_impl_invoke, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, int)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from ‘boost::detail::variant::visitation_impl, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >, boost::detail::variant::move_storage, void*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, int, boost::detail::variant::move_storage&, void*, mpl_::bool_, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, mpl_::int_<0>*, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor_impl(int, int, boost::detail::variant::move_storage&, void*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2338:48, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor(boost::detail::variant::move_storage&)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2350:43, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::variant_assign(boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&&)’ at /usr/include/boost/variant/variant.hpp:2081:41, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2127:27, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2114:10, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::operator= >(std::array&&)boost::enable_if&&>, boost::mpl::not_ > >, boost::detail::variant::is_variant_constructible_from&&, boost::mpl::l_item, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, mpl_::bool_, mpl_::bool_ >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&>::type’ at /usr/include/boost/variant/variant.hpp:2146:20, inlined from ‘dolfin::Parameter::set_range(double, double)’ at /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.cpp:113:60: /usr/include/c++/14/bits/stl_tree.h:193:44: warning: ‘MEM[(struct _Rb_tree_header &)&temp + 16]._M_header._M_left’ may be used uninitialized [-Wmaybe-uninitialized] 193 | _M_header._M_left = __from._M_header._M_left; | ~~~~~~~~~~~~~~~~~^~~~~~~ /usr/include/boost/variant/variant.hpp: In member function ‘dolfin::Parameter::set_range(double, double)’: /usr/include/boost/variant/variant.hpp:2126:21: note: ‘temp’ declared here 2126 | variant temp( detail::variant::move(rhs) ); | ^~~~ In member function ‘std::_Rb_tree_header::_M_move_data(std::_Rb_tree_header&)’, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_data(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1417:29, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_assign(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1706:14, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_tree.h:1740:21, inlined from ‘std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_set.h:304:7, inlined from ‘boost::detail::variant::move_storage::internal_visit, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, int) constvoid’ at /usr/include/boost/variant/variant.hpp:597:21, inlined from ‘boost::detail::variant::visitation_impl_invoke_impl, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, mpl_::bool_)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from ‘boost::detail::variant::visitation_impl_invoke, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, int)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from ‘boost::detail::variant::visitation_impl, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >, boost::detail::variant::move_storage, void*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, int, boost::detail::variant::move_storage&, void*, mpl_::bool_, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, mpl_::int_<0>*, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor_impl(int, int, boost::detail::variant::move_storage&, void*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2338:48, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor(boost::detail::variant::move_storage&)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2350:43, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::variant_assign(boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&&)’ at /usr/include/boost/variant/variant.hpp:2081:41, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2127:27, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2114:10, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::operator= >(std::array&&)boost::enable_if&&>, boost::mpl::not_ > >, boost::detail::variant::is_variant_constructible_from&&, boost::mpl::l_item, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, mpl_::bool_, mpl_::bool_ >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&>::type’ at /usr/include/boost/variant/variant.hpp:2146:20, inlined from ‘dolfin::Parameter::set_range(double, double)’ at /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.cpp:113:60: /usr/include/c++/14/bits/stl_tree.h:194:45: warning: ‘MEM[(struct _Rb_tree_header &)&temp + 16]._M_header._M_right’ may be used uninitialized [-Wmaybe-uninitialized] 194 | _M_header._M_right = __from._M_header._M_right; | ~~~~~~~~~~~~~~~~~^~~~~~~~ /usr/include/boost/variant/variant.hpp: In member function ‘dolfin::Parameter::set_range(double, double)’: /usr/include/boost/variant/variant.hpp:2126:21: note: ‘temp’ declared here 2126 | variant temp( detail::variant::move(rhs) ); | ^~~~ In member function ‘std::_Rb_tree_header::_M_move_data(std::_Rb_tree_header&)’, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_data(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1417:29, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::_M_move_assign(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, std::integral_constant)’ at /usr/include/c++/14/bits/stl_tree.h:1706:14, inlined from ‘std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::_Rb_tree, std::allocator >, std::__cxx11::basic_string, std::allocator >, std::_Identity, std::allocator > >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_tree.h:1740:21, inlined from ‘std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >::operator=(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&&)’ at /usr/include/c++/14/bits/stl_set.h:304:7, inlined from ‘boost::detail::variant::move_storage::internal_visit, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >&, int) constvoid’ at /usr/include/boost/variant/variant.hpp:597:21, inlined from ‘boost::detail::variant::visitation_impl_invoke_impl, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, mpl_::bool_)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34, inlined from ‘boost::detail::variant::visitation_impl_invoke, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, boost::detail::variant::move_storage&, void*, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, int)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41, inlined from ‘boost::detail::variant::visitation_impl, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >, boost::detail::variant::move_storage, void*, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_>(int, int, boost::detail::variant::move_storage&, void*, mpl_::bool_, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::has_fallback_type_, mpl_::int_<0>*, boost::detail::variant::visitation_impl_step, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, boost::mpl::l_iter >*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor_impl(int, int, boost::detail::variant::move_storage&, void*)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2338:48, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::internal_apply_visitor(boost::detail::variant::move_storage&)boost::detail::variant::move_storage::result_type’ at /usr/include/boost/variant/variant.hpp:2350:43, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::variant_assign(boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&&)’ at /usr/include/boost/variant/variant.hpp:2081:41, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2127:27, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::move_assign >(std::array&&)void’ at /usr/include/boost/variant/variant.hpp:2114:10, inlined from ‘boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >::operator= >(std::array&&)boost::enable_if&&>, boost::mpl::not_ > >, boost::detail::variant::is_variant_constructible_from&&, boost::mpl::l_item, boost::blank, boost::mpl::l_item, std::array, boost::mpl::l_item, std::array, boost::mpl::l_item, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > >, boost::mpl::l_end> > > > >, mpl_::bool_, mpl_::bool_ >, boost::variant, std::array, std::set, std::allocator >, std::less, std::allocator > >, std::allocator, std::allocator > > > >&>::type’ at /usr/include/boost/variant/variant.hpp:2146:20, inlined from ‘dolfin::Parameter::set_range(double, double)’ at /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameter.cpp:113:60: /usr/include/c++/14/bits/stl_tree.h:196:30: warning: ‘MEM[(struct _Rb_tree_header &)&temp + 16]._M_node_count’ may be used uninitialized [-Wmaybe-uninitialized] 196 | _M_node_count = __from._M_node_count; | ~~~~~~~^~~~~~~~~~~~~ /usr/include/boost/variant/variant.hpp: In member function ‘dolfin::Parameter::set_range(double, double)’: /usr/include/boost/variant/variant.hpp:2126:21: note: ‘temp’ declared here 2126 | make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' variant temp( detail::variant::move(rhs) ); | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 96%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o -MF CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/refinement/LocalMeshCoarsening.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 98%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/refine.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/refine.cpp.o -MF CMakeFiles/dolfin.dir/refinement/refine.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/refine.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/refinement/refine.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 96%] Building CXX object dolfin/CMakeFiles/dolfin.dir/parameter/Parameters.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/parameter/Parameters.cpp.o -MF CMakeFiles/dolfin.dir/parameter/Parameters.cpp.o.d -o CMakeFiles/dolfin.dir/parameter/Parameters.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/parameter/Parameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [100%] Building CXX object dolfin/CMakeFiles/dolfin.dir/ts/CVode.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/ts/CVode.cpp.o -MF CMakeFiles/dolfin.dir/ts/CVode.cpp.o.d -o CMakeFiles/dolfin.dir/ts/CVode.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/ts/CVode.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 96%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o -MF CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/refinement/ParallelRefinement.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 98%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o -MF CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/refinement/PlazaRefinementND.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 98%] Building CXX object dolfin/CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -std=c++11 -fPIC -MD -MT dolfin/CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o -MF CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o.d -o CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/refinement/RegularCutRefinement.cpp make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/refinement/RegularCutRefinement.cpp: In static member function ‘static void dolfin::RegularCutRefinement::refine_marked(dolfin::Mesh&, const dolfin::Mesh&, const std::vector&, const dolfin::IndexSet&)’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/refinement/RegularCutRefinement.cpp:323:19: warning: unused variable ‘twin_marker’ [-Wunused-variable] 323 | const int twin_marker = refinement_markers[bisection_twin]; | ^~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [100%] Linking CXX shared library libdolfin.so cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/cmake -E cmake_link_script CMakeFiles/dolfin.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -g -DNDEBUG -Wl,--dependency-file=CMakeFiles/dolfin.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now 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CMakeFiles/dolfin.dir/mesh/TriangleCell.cpp.o CMakeFiles/dolfin.dir/multistage/MultiStageScheme.cpp.o CMakeFiles/dolfin.dir/multistage/PointIntegralSolver.cpp.o CMakeFiles/dolfin.dir/multistage/RKSolver.cpp.o CMakeFiles/dolfin.dir/nls/NewtonSolver.cpp.o CMakeFiles/dolfin.dir/nls/PETScSNESSolver.cpp.o CMakeFiles/dolfin.dir/nls/PETScTAOSolver.cpp.o CMakeFiles/dolfin.dir/nls/TAOLinearBoundSolver.cpp.o CMakeFiles/dolfin.dir/parameter/GlobalParameters.cpp.o CMakeFiles/dolfin.dir/parameter/Parameter.cpp.o CMakeFiles/dolfin.dir/parameter/Parameters.cpp.o CMakeFiles/dolfin.dir/refinement/BisectionRefinement1D.cpp.o CMakeFiles/dolfin.dir/refinement/LocalMeshCoarsening.cpp.o CMakeFiles/dolfin.dir/refinement/ParallelRefinement.cpp.o CMakeFiles/dolfin.dir/refinement/PlazaRefinementND.cpp.o CMakeFiles/dolfin.dir/refinement/refine.cpp.o CMakeFiles/dolfin.dir/refinement/RegularCutRefinement.cpp.o CMakeFiles/dolfin.dir/ts/CVode.cpp.o /usr/lib64/libboost_timer.so /usr/lib64/libboost_filesystem.so /usr/lib64/libboost_program_options.so /usr/lib64/libboost_iostreams.so /lib64/libhdf5.so /lib64/libz.so /usr/lib64/libboost_regex.so /usr/lib64/libpetsc.so cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin && /usr/bin/cmake -E cmake_symlink_library libdolfin.so.2019.1.0 libdolfin.so.2019.1 libdolfin.so make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [100%] Built target dolfin make[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/CMakeFiles 0 ++ python3 -c 'import ffc; print(ffc.get_include_path())' + ffc_path=/usr/lib/python3.13/site-packages/ffc/backends/ufc ++ pkgconf --cflags eigen3 + eigen_options=-I/usr/include/eigen3 + sed -r -i 's|Cflags:.*|\0 -I/usr/lib/python3.13/site-packages/ffc/backends/ufc -I/usr/include/eigen3|' dolfin.pc + /usr/bin/make install DESTDIR=/builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT 'INSTALL=/usr/bin/install -p' /usr/bin/cmake -S/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -B/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/CMakeFiles /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/depend 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/builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/TopologyComputation.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/TriangleCell.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/Vertex.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/multistage/dolfin_multistage.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/multistage/MultiStageScheme.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/multistage/PointIntegralSolver.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/multistage/RKSolver.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/nls/dolfin_nls.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/nls/NewtonSolver.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/nls/NonlinearProblem.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/nls/OptimisationProblem.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/nls/PETScSNESSolver.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/nls/PETScTAOSolver.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/nls/TAOLinearBoundSolver.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/parameter/dolfin_parameter.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/parameter/GlobalParameters.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/parameter/Parameter.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/parameter/Parameters.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/refinement/BisectionRefinement1D.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/refinement/dolfin_refinement.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/refinement/LocalMeshCoarsening.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/refinement/ParallelRefinement.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/refinement/PlazaRefinementND.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/refinement/refine.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/refinement/RegularCutRefinement.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/ts/dolfin_ts.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/ts/CVode.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/libdolfin.so.2019.1.0 -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/libdolfin.so.2019.1 -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/libdolfin.so -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/DOLFINTargets.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/DOLFINTargets-relwithdebinfo.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/FindPETSc.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/FindSLEPc.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/DOLFINConfig.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/DOLFINConfigVersion.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/UseDOLFIN.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/pkgconfig/dolfin.pc ---------------------------------------------------------------------------- DOLFIN has now been installed in /usr and the demo programs have been installed in /usr/share/dolfin/demo Before rushing off to try the demos, don't forget to update your environment variables. This can be done easily using the helper file 'dolfin.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/share/dolfin/dolfin.conf For future reference, we recommend that you add this command to your configuration (.bashrc, .profile or similar). ---------------------------------------------------------------------------- + cd ../python + VERBOSE=1 + CMAKE_PREFIX_PATH=/builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake + CMAKE_SKIP_INSTALL_RPATH=yes + CMAKE_SKIP_RPATH=yes + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wno-unused-variable -DH5_USE_110_API' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP' running build running build_py creating build creating build/lib.linux-aarch64-cpython-313 creating build/lib.linux-aarch64-cpython-313/dolfin copying dolfin/__init__.py -> build/lib.linux-aarch64-cpython-313/dolfin creating build/lib.linux-aarch64-cpython-313/dolfin/common copying dolfin/common/__init__.py -> build/lib.linux-aarch64-cpython-313/dolfin/common copying dolfin/common/plotting.py -> build/lib.linux-aarch64-cpython-313/dolfin/common copying dolfin/common/timer.py -> build/lib.linux-aarch64-cpython-313/dolfin/common creating build/lib.linux-aarch64-cpython-313/dolfin/function copying dolfin/function/__init__.py -> build/lib.linux-aarch64-cpython-313/dolfin/function copying dolfin/function/argument.py -> build/lib.linux-aarch64-cpython-313/dolfin/function copying dolfin/function/constant.py -> build/lib.linux-aarch64-cpython-313/dolfin/function copying dolfin/function/expression.py -> build/lib.linux-aarch64-cpython-313/dolfin/function copying dolfin/function/function.py -> build/lib.linux-aarch64-cpython-313/dolfin/function copying dolfin/function/functionspace.py -> build/lib.linux-aarch64-cpython-313/dolfin/function copying dolfin/function/jit.py -> build/lib.linux-aarch64-cpython-313/dolfin/function copying dolfin/function/multimeshfunction.py -> build/lib.linux-aarch64-cpython-313/dolfin/function copying dolfin/function/multimeshfunctionspace.py -> build/lib.linux-aarch64-cpython-313/dolfin/function copying dolfin/function/specialfunctions.py -> build/lib.linux-aarch64-cpython-313/dolfin/function creating build/lib.linux-aarch64-cpython-313/dolfin/fem copying dolfin/fem/__init__.py -> build/lib.linux-aarch64-cpython-313/dolfin/fem copying dolfin/fem/adaptivesolving.py -> build/lib.linux-aarch64-cpython-313/dolfin/fem copying dolfin/fem/assembling.py -> build/lib.linux-aarch64-cpython-313/dolfin/fem copying dolfin/fem/dirichletbc.py -> build/lib.linux-aarch64-cpython-313/dolfin/fem copying dolfin/fem/errorcontrolgenerator.py -> build/lib.linux-aarch64-cpython-313/dolfin/fem copying dolfin/fem/form.py -> build/lib.linux-aarch64-cpython-313/dolfin/fem copying dolfin/fem/formmanipulations.py -> build/lib.linux-aarch64-cpython-313/dolfin/fem copying dolfin/fem/interpolation.py -> build/lib.linux-aarch64-cpython-313/dolfin/fem copying dolfin/fem/multimeshdirichletbc.py -> build/lib.linux-aarch64-cpython-313/dolfin/fem copying dolfin/fem/norms.py -> build/lib.linux-aarch64-cpython-313/dolfin/fem copying dolfin/fem/problem.py -> build/lib.linux-aarch64-cpython-313/dolfin/fem copying dolfin/fem/projection.py -> build/lib.linux-aarch64-cpython-313/dolfin/fem copying dolfin/fem/solvers.py -> build/lib.linux-aarch64-cpython-313/dolfin/fem copying dolfin/fem/solving.py -> build/lib.linux-aarch64-cpython-313/dolfin/fem creating build/lib.linux-aarch64-cpython-313/dolfin/la copying dolfin/la/__init__.py -> build/lib.linux-aarch64-cpython-313/dolfin/la copying dolfin/la/solver.py -> build/lib.linux-aarch64-cpython-313/dolfin/la creating build/lib.linux-aarch64-cpython-313/dolfin/io copying dolfin/io/__init__.py -> build/lib.linux-aarch64-cpython-313/dolfin/io creating build/lib.linux-aarch64-cpython-313/dolfin/jit copying dolfin/jit/__init__.py -> build/lib.linux-aarch64-cpython-313/dolfin/jit copying dolfin/jit/jit.py -> build/lib.linux-aarch64-cpython-313/dolfin/jit copying dolfin/jit/pybind11jit.py -> build/lib.linux-aarch64-cpython-313/dolfin/jit creating build/lib.linux-aarch64-cpython-313/dolfin/mesh copying dolfin/mesh/__init__.py -> build/lib.linux-aarch64-cpython-313/dolfin/mesh copying dolfin/mesh/ale.py -> build/lib.linux-aarch64-cpython-313/dolfin/mesh copying dolfin/mesh/meshfunction.py -> build/lib.linux-aarch64-cpython-313/dolfin/mesh copying dolfin/mesh/meshvaluecollection.py -> build/lib.linux-aarch64-cpython-313/dolfin/mesh copying dolfin/mesh/subdomain.py -> build/lib.linux-aarch64-cpython-313/dolfin/mesh copying dolfin/mesh/svgtools.py -> build/lib.linux-aarch64-cpython-313/dolfin/mesh copying dolfin/mesh/ufl_util.py -> build/lib.linux-aarch64-cpython-313/dolfin/mesh creating build/lib.linux-aarch64-cpython-313/dolfin/multistage copying dolfin/multistage/__init__.py -> build/lib.linux-aarch64-cpython-313/dolfin/multistage copying dolfin/multistage/factorize.py -> build/lib.linux-aarch64-cpython-313/dolfin/multistage copying dolfin/multistage/multistagescheme.py -> build/lib.linux-aarch64-cpython-313/dolfin/multistage copying dolfin/multistage/multistagesolvers.py -> build/lib.linux-aarch64-cpython-313/dolfin/multistage copying dolfin/multistage/rushlarsenschemes.py -> build/lib.linux-aarch64-cpython-313/dolfin/multistage creating build/lib.linux-aarch64-cpython-313/dolfin/parameter copying dolfin/parameter/__init__.py -> build/lib.linux-aarch64-cpython-313/dolfin/parameter creating build/lib.linux-aarch64-cpython-313/dolfin_utils creating build/lib.linux-aarch64-cpython-313/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/__init__.py -> build/lib.linux-aarch64-cpython-313/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/abaqus.py -> build/lib.linux-aarch64-cpython-313/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/meshconvert.py -> build/lib.linux-aarch64-cpython-313/dolfin_utils/meshconvert copying dolfin_utils/meshconvert/xml_writer.py -> build/lib.linux-aarch64-cpython-313/dolfin_utils/meshconvert creating build/lib.linux-aarch64-cpython-313/dolfin_utils/test copying dolfin_utils/test/__init__.py -> build/lib.linux-aarch64-cpython-313/dolfin_utils/test copying dolfin_utils/test/fixtures.py -> build/lib.linux-aarch64-cpython-313/dolfin_utils/test copying dolfin_utils/test/paths.py -> build/lib.linux-aarch64-cpython-313/dolfin_utils/test copying dolfin_utils/test/skips.py -> build/lib.linux-aarch64-cpython-313/dolfin_utils/test creating build/lib.linux-aarch64-cpython-313/fenics copying fenics/__init__.py -> build/lib.linux-aarch64-cpython-313/fenics running build_ext Re-run cmake no build system arguments CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 14.2.1 -- The CXX compiler identification is GNU 14.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at /usr/share/cmake/pybind11/FindPythonLibsNew.cmake:101 (message): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning, or preferably upgrade to using FindPython, either by calling it explicitly before pybind11, or by setting PYBIND11_FINDPYTHON ON before pybind11. Call Stack (most recent call first): /usr/share/cmake/pybind11/pybind11Tools.cmake:50 (find_package) /usr/share/cmake/pybind11/pybind11Common.cmake:228 (include) /usr/share/cmake/pybind11/pybind11Config.cmake:250 (include) CMakeLists.txt:21 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13.1", minimum required is "3.7") -- Found PythonLibs: /usr/lib64/libpython3.13.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.13.6") CMake Warning (dev) at /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/UseDOLFIN.cmake:34 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:24 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PkgConfig: /usr/bin/pkg-config (found version "2.3.0") -- Checking for one of the modules 'craypetsc_real;PETSc' -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Checking for package 'PETSc4Py' -- PETSc4py could not be found. Be sure to set PYTHONPATH appropriately. (missing: PETSC4PY_INCLUDE_DIRS PETSC4PY_VERSION) Traceback (most recent call last): File "", line 1, in import mpi4py; print(mpi4py.get_include()) ^^^^^^^^^^^^^ ModuleNotFoundError: No module named 'mpi4py' jfa: mpi4py not found -- Could NOT find MPI4PY (missing: MPI4PY_INCLUDE_DIR) -- Configuring done (2.0s) -- Generating done (0.0s) -- Build files have been written to: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-aarch64-cpython-313 Change Dir: '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-aarch64-cpython-313' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j3 /usr/bin/cmake -S/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python -B/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-aarch64-cpython-313 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-aarch64-cpython-313/CMakeFiles /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-aarch64-cpython-313//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-aarch64-cpython-313' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-aarch64-cpython-313' cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-aarch64-cpython-313 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-aarch64-cpython-313 /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-aarch64-cpython-313 /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-aarch64-cpython-313/CMakeFiles/cpp.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-aarch64-cpython-313' /usr/bin/gmake -f CMakeFiles/cpp.dir/build.make CMakeFiles/cpp.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-aarch64-cpython-313' [ 14%] Building CXX object CMakeFiles/cpp.dir/src/dolfin.cpp.o [ 14%] Building CXX object CMakeFiles/cpp.dir/src/adaptivity.cpp.o [ 9%] Building CXX object CMakeFiles/cpp.dir/src/parameter.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.13 -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/adaptivity.cpp.o -MF 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/multistage.cpp.o -MF CMakeFiles/cpp.dir/src/multistage.cpp.o.d -o CMakeFiles/cpp.dir/src/multistage.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/multistage.cpp [ 71%] Building CXX object CMakeFiles/cpp.dir/src/ts.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.13 -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/ts.cpp.o -MF CMakeFiles/cpp.dir/src/ts.cpp.o.d -o CMakeFiles/cpp.dir/src/ts.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/ts.cpp [ 76%] Building CXX object CMakeFiles/cpp.dir/src/io.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.13 -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/io.cpp.o -MF CMakeFiles/cpp.dir/src/io.cpp.o.d -o CMakeFiles/cpp.dir/src/io.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/io.cpp In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/BoundaryMesh.h:28, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/mesh.cpp:27: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h: In instantiation of ‘dolfin::MeshFunction::MeshFunction(std::shared_ptr, std::size_t, const dolfin::MeshDomains&) [with T = bool; std::size_t = long unsigned int]’: /usr/include/pybind11/detail/init.h:76:12: required from ‘Class* pybind11::detail::initimpl::construct_or_initialize(Args&& ...) [with Class = dolfin::MeshFunction; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; typename std::enable_if::value, int>::type = 0]’ 76 | return new Class(std::forward(args)...); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/pybind11/detail/init.h:208:70: required from ‘static void pybind11::detail::initimpl::constructor::execute(Class&, const Extra& ...) [with Class = pybind11::class_, std::shared_ptr >, dolfin::Variable>; Extra = {}; typename std::enable_if<(! Class::has_alias), int>::type = 0; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}]’ 208 | v_h.value_ptr() = construct_or_initialize>(std::forward(args)...); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/pybind11/pybind11.h:1659:21: required from ‘pybind11::class_& pybind11::class_::def(const pybind11::detail::initimpl::constructor&, const Extra& ...) [with Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; Extra = {}; type_ = dolfin::MeshFunction; options = {std::shared_ptr >, dolfin::Variable}]’ 1659 | init.execute(*this, extra...); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/mesh.cpp:429:5: required from here 391 | py::class_, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 | std::shared_ptr>, dolfin::Variable> \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 | (m, "MeshFunction"#SCALAR_NAME, "DOLFIN MeshFunction object") \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 | .def(py::init([](std::shared_ptr mesh, std::size_t dim) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 | { return dolfin::MeshFunction(mesh, dim, 0); })) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | .def(py::init, std::size_t, SCALAR>()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 | .def(py::init, std::string>()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 | .def(py::init, std::size_t, const dolfin::MeshDomains&>()) \ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h:398:23: warning: unused variable ‘D’ [-Wunused-variable] 398 | const std::size_t D = _mesh->topology().dim(); | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h: In instantiation of ‘dolfin::MeshFunction::MeshFunction(std::shared_ptr, std::size_t, const dolfin::MeshDomains&) [with T = int; std::size_t = long unsigned int]’: /usr/include/pybind11/detail/init.h:76:12: required from ‘Class* pybind11::detail::initimpl::construct_or_initialize(Args&& ...) [with Class = dolfin::MeshFunction; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; typename std::enable_if::value, int>::type = 0]’ 76 | return new Class(std::forward(args)...); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/pybind11/detail/init.h:208:70: required from ‘static void pybind11::detail::initimpl::constructor::execute(Class&, const Extra& ...) [with Class = pybind11::class_, std::shared_ptr >, dolfin::Variable>; Extra = {}; typename std::enable_if<(! Class::has_alias), int>::type = 0; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}]’ 208 | v_h.value_ptr() = construct_or_initialize>(std::forward(args)...); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/pybind11/pybind11.h:1659:21: required from ‘pybind11::class_& pybind11::class_::def(const pybind11::detail::initimpl::constructor&, const Extra& ...) [with Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; Extra = {}; type_ = dolfin::MeshFunction; options = {std::shared_ptr >, dolfin::Variable}]’ 1659 | init.execute(*this, extra...); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/mesh.cpp:430:5: required from here 391 | py::class_, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 | std::shared_ptr>, dolfin::Variable> \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 | (m, "MeshFunction"#SCALAR_NAME, "DOLFIN MeshFunction object") \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 | .def(py::init([](std::shared_ptr mesh, std::size_t dim) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 | { return dolfin::MeshFunction(mesh, dim, 0); })) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | .def(py::init, std::size_t, SCALAR>()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 | .def(py::init, std::string>()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 | .def(py::init, std::size_t, const dolfin::MeshDomains&>()) \ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h:398:23: warning: unused variable ‘D’ [-Wunused-variable] 398 | const std::size_t D = _mesh->topology().dim(); | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h: In instantiation of ‘dolfin::MeshFunction::MeshFunction(std::shared_ptr, std::size_t, const dolfin::MeshDomains&) [with T = double; std::size_t = long unsigned int]’: /usr/include/pybind11/detail/init.h:76:12: required from ‘Class* pybind11::detail::initimpl::construct_or_initialize(Args&& ...) [with Class = dolfin::MeshFunction; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; typename std::enable_if::value, int>::type = 0]’ 76 | return new Class(std::forward(args)...); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/pybind11/detail/init.h:208:70: required from ‘static void pybind11::detail::initimpl::constructor::execute(Class&, const Extra& ...) [with Class = pybind11::class_, std::shared_ptr >, dolfin::Variable>; Extra = {}; typename std::enable_if<(! Class::has_alias), int>::type = 0; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}]’ 208 | v_h.value_ptr() = construct_or_initialize>(std::forward(args)...); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/pybind11/pybind11.h:1659:21: required from ‘pybind11::class_& pybind11::class_::def(const pybind11::detail::initimpl::constructor&, const Extra& ...) [with Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; Extra = {}; type_ = dolfin::MeshFunction; options = {std::shared_ptr >, dolfin::Variable}]’ 1659 | init.execute(*this, extra...); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/mesh.cpp:431:5: required from here 391 | py::class_, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 | std::shared_ptr>, dolfin::Variable> \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 | (m, "MeshFunction"#SCALAR_NAME, "DOLFIN MeshFunction object") \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 | .def(py::init([](std::shared_ptr mesh, std::size_t dim) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 | { return dolfin::MeshFunction(mesh, dim, 0); })) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | .def(py::init, std::size_t, SCALAR>()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 | .def(py::init, std::string>()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 | .def(py::init, std::size_t, const dolfin::MeshDomains&>()) \ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h:398:23: warning: unused variable ‘D’ [-Wunused-variable] 398 | const std::size_t D = _mesh->topology().dim(); | ^ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h: In instantiation of ‘dolfin::MeshFunction::MeshFunction(std::shared_ptr, std::size_t, const dolfin::MeshDomains&) [with T = long unsigned int; std::size_t = long unsigned int]’: /usr/include/pybind11/detail/init.h:76:12: required from ‘Class* pybind11::detail::initimpl::construct_or_initialize(Args&& ...) [with Class = dolfin::MeshFunction; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; typename std::enable_if::value, int>::type = 0]’ 76 | return new Class(std::forward(args)...); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/pybind11/detail/init.h:208:70: required from ‘static void pybind11::detail::initimpl::constructor::execute(Class&, const Extra& ...) [with Class = pybind11::class_, std::shared_ptr >, dolfin::Variable>; Extra = {}; typename std::enable_if<(! Class::has_alias), int>::type = 0; Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}]’ 208 | v_h.value_ptr() = construct_or_initialize>(std::forward(args)...); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/pybind11/pybind11.h:1659:21: required from ‘pybind11::class_& pybind11::class_::def(const pybind11::detail::initimpl::constructor&, const Extra& ...) [with Args = {std::shared_ptr, long unsigned int, const dolfin::MeshDomains&}; Extra = {}; type_ = dolfin::MeshFunction; options = {std::shared_ptr >, dolfin::Variable}]’ 1659 | init.execute(*this, extra...); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/mesh.cpp:432:5: required from here 391 | py::class_, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 | std::shared_ptr>, dolfin::Variable> \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 | (m, "MeshFunction"#SCALAR_NAME, "DOLFIN MeshFunction object") \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 | .def(py::init([](std::shared_ptr mesh, std::size_t dim) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 | { return dolfin::MeshFunction(mesh, dim, 0); })) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 | .def(py::init, std::size_t, SCALAR>()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 | .def(py::init, std::string>()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 | .def(py::init, std::size_t, const dolfin::MeshDomains&>()) \ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/mesh/MeshFunction.h:398:23: warning: unused variable ‘D’ [-Wunused-variable] 398 | const std::size_t D = _mesh->topology().dim(); | ^ [ 80%] Building CXX object CMakeFiles/cpp.dir/src/la.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.13 -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/la.cpp.o -MF CMakeFiles/cpp.dir/src/la.cpp.o.d -o CMakeFiles/cpp.dir/src/la.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/la.cpp In file included from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Attribute.h:30, from /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/io.cpp:26: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::add_attribute_value(hid_t, std::string, const T&) [with T = std::__cxx11::basic_string; hid_t = long int; std::string = std::__cxx11::basic_string]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:578:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 578 | herr_t status = H5Tset_size(datatype_id, attribute_value.size()); | ^~~~~~ /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h: In static member function ‘static void dolfin::HDF5Interface::get_attribute_value(hid_t, hid_t, T&) [with T = std::__cxx11::basic_string; hid_t = long int]’: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/io/HDF5Interface.h:661:12: warning: variable ‘status’ set but not used [-Wunused-but-set-variable] 661 | herr_t status = H5Tset_size(memtype, string_length); | ^~~~~~ [ 85%] Building CXX object CMakeFiles/cpp.dir/src/nls.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.13 -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/nls.cpp.o -MF CMakeFiles/cpp.dir/src/nls.cpp.o.d -o CMakeFiles/cpp.dir/src/nls.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/nls.cpp [ 90%] Building CXX object CMakeFiles/cpp.dir/src/refinement.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.13 -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/refinement.cpp.o -MF CMakeFiles/cpp.dir/src/refinement.cpp.o.d -o CMakeFiles/cpp.dir/src/refinement.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/refinement.cpp [ 95%] Building CXX object CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o /usr/bin/g++ -DDOLFIN_VERSION=\"2019.1.0\" -DHAS_HDF5 -DHAS_PETSC -DHAS_ZLIB -DNDEBUG -Dcpp_EXPORTS -isystem /usr/include/python3.13 -isystem /usr/lib/python3.13/site-packages/ffc/backends/ufc -isystem /usr/include/eigen3 -isystem /usr/include/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -std=c++11 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o -MF CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o.d -o CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o -c /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/src/MPICommWrapper.cpp [100%] Linking CXX shared library /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/lib.linux-aarch64-cpython-313/dolfin/cpp.cpython-313-aarch64-linux-gnu.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cpp.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -DVERSION_INFO=\"2019.1.0\" -I/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -O3 -DNDEBUG -flto -Wl,--dependency-file=CMakeFiles/cpp.dir/link.d -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,cpp.cpython-313-aarch64-linux-gnu.so -o /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/lib.linux-aarch64-cpython-313/dolfin/cpp.cpython-313-aarch64-linux-gnu.so CMakeFiles/cpp.dir/src/dolfin.cpp.o CMakeFiles/cpp.dir/src/parameter.cpp.o CMakeFiles/cpp.dir/src/adaptivity.cpp.o CMakeFiles/cpp.dir/src/ale.cpp.o CMakeFiles/cpp.dir/src/common.cpp.o CMakeFiles/cpp.dir/src/fem.cpp.o CMakeFiles/cpp.dir/src/function.cpp.o CMakeFiles/cpp.dir/src/generation.cpp.o CMakeFiles/cpp.dir/src/geometry.cpp.o CMakeFiles/cpp.dir/src/graph.cpp.o CMakeFiles/cpp.dir/src/log.cpp.o CMakeFiles/cpp.dir/src/math.cpp.o CMakeFiles/cpp.dir/src/mesh.cpp.o CMakeFiles/cpp.dir/src/multistage.cpp.o CMakeFiles/cpp.dir/src/ts.cpp.o CMakeFiles/cpp.dir/src/io.cpp.o CMakeFiles/cpp.dir/src/la.cpp.o CMakeFiles/cpp.dir/src/nls.cpp.o CMakeFiles/cpp.dir/src/refinement.cpp.o CMakeFiles/cpp.dir/src/MPICommWrapper.cpp.o -Wl,-rpath,/builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64 /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/libdolfin.so.2019.1.0 /usr/lib64/libboost_timer.so /lib64/libhdf5.so /usr/lib64/libpetsc.so /usr/bin/strip /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/lib.linux-aarch64-cpython-313/dolfin/cpp.cpython-313-aarch64-linux-gnu.so gmake[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-aarch64-cpython-313' [100%] Built target cpp gmake[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-aarch64-cpython-313' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/python/build/temp.linux-aarch64-cpython-313/CMakeFiles 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Tt2U9T + umask 022 + cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build + '[' /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT ++ dirname /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/dolfin-2019.1.0.post0-build + mkdir /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd dolfin-2019.1.0.post0 + cd build + /usr/bin/make install DESTDIR=/builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT 'INSTALL=/usr/bin/install -p' /usr/bin/cmake -S/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 -B/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/CMakeFiles /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin/ale /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin/ale /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin/ale/CMakeFiles/compile_ale_forms.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/ale/CMakeFiles/compile_ale_forms.dir/build.make dolfin/ale/CMakeFiles/compile_ale_forms.dir/build make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Nothing to be done for 'dolfin/ale/CMakeFiles/compile_ale_forms.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [ 0%] Built target compile_ale_forms /usr/bin/make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/dolfin /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/dolfin/CMakeFiles/dolfin.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /usr/bin/make -f dolfin/CMakeFiles/dolfin.dir/build.make dolfin/CMakeFiles/dolfin.dir/build make[2]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[2]: Nothing to be done for 'dolfin/CMakeFiles/dolfin.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' [100%] Built target dolfin make[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "RelWithDebInfo" -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/bin/dolfin-convert -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/bin/dolfin-order -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/bin/dolfin-plot -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/dolfin.conf -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/bin/dolfin-version -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/bin/fenics-version -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/bin/dolfin-get-demos -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/CMakeLists.txt -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/auto-adaptive-poisson -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/auto-adaptive-poisson/cpp -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/auto-adaptive-poisson/cpp/AdaptivePoisson.ufl -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/auto-adaptive-poisson/cpp/main.cpp -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/auto-adaptive-poisson/cpp/AdaptivePoisson.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/auto-adaptive-poisson/cpp/CMakeLists.txt -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/bcs -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/bcs/aneurysm.xml.gz -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/bcs/cpp -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/bcs/cpp/Poisson.ufl -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/bcs/cpp/main.cpp -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/bcs/cpp/Poisson.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/bcs/cpp/CMakeLists.txt -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/bcs/python -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/bcs/python/demo_bcs.py -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/biharmonic -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/biharmonic/cpp -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/biharmonic/cpp/Biharmonic.ufl -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/biharmonic/cpp/main.cpp -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/biharmonic/cpp/Biharmonic.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/biharmonic/cpp/CMakeLists.txt -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/built-in-meshes -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/built-in-meshes/cpp -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/built-in-meshes/cpp/main.cpp -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/built-in-meshes/cpp/CMakeLists.txt -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/cahn-hilliard -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/cahn-hilliard/cpp -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/cahn-hilliard/cpp/CahnHilliard2D.ufl -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/cahn-hilliard/cpp/CahnHilliard3D.ufl -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/cahn-hilliard/cpp/main.cpp -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/cahn-hilliard/cpp/CahnHilliard2D.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/cahn-hilliard/cpp/CahnHilliard2D.cpp -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/cahn-hilliard/cpp/CahnHilliard3D.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/cahn-hilliard/cpp/CahnHilliard3D.cpp -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/cahn-hilliard/cpp/CMakeLists.txt -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/eigenvalue -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/eigenvalue/box_with_dent.xml.gz -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/eigenvalue/cpp -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/eigenvalue/cpp/StiffnessMatrix.ufl -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/eigenvalue/cpp/main.cpp -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/eigenvalue/cpp/StiffnessMatrix.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/demo/documented/eigenvalue/cpp/CMakeLists.txt -- Installing: 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/builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshGeometry.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/Mesh.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshHierarchy.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshOrdering.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshPartitioning.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshQuality.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshRelation.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshRenumbering.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshSmoothing.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshTopology.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshTransformation.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MeshValueCollection.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/MultiMesh.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/PeriodicBoundaryComputation.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/PointCell.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/QuadrilateralCell.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/SubDomain.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/SubMesh.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/SubsetIterator.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/TetrahedronCell.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/TopologyComputation.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/TriangleCell.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/mesh/Vertex.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/multistage/dolfin_multistage.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/multistage/MultiStageScheme.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/multistage/PointIntegralSolver.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/multistage/RKSolver.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/nls/dolfin_nls.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/nls/NewtonSolver.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/nls/NonlinearProblem.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/nls/OptimisationProblem.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/nls/PETScSNESSolver.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/nls/PETScTAOSolver.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/nls/TAOLinearBoundSolver.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/parameter/dolfin_parameter.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/parameter/GlobalParameters.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/parameter/Parameter.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/parameter/Parameters.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/refinement/BisectionRefinement1D.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/refinement/dolfin_refinement.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/refinement/LocalMeshCoarsening.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/refinement/ParallelRefinement.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/refinement/PlazaRefinementND.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/refinement/refine.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/refinement/RegularCutRefinement.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/ts/dolfin_ts.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/include/dolfin/ts/CVode.h -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/libdolfin.so.2019.1.0 -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/libdolfin.so.2019.1 -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/libdolfin.so -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/DOLFINTargets.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/DOLFINTargets-relwithdebinfo.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/FindPETSc.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/FindSLEPc.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/DOLFINConfig.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/DOLFINConfigVersion.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake/UseDOLFIN.cmake -- Installing: /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/pkgconfig/dolfin.pc ---------------------------------------------------------------------------- DOLFIN has now been installed in /usr and the demo programs have been installed in /usr/share/dolfin/demo Before rushing off to try the demos, don't forget to update your environment variables. This can be done easily using the helper file 'dolfin.conf' which sets the appropriate variables (for users of the Bash shell). To update your environment variables, run the following command: source /usr/share/dolfin/dolfin.conf For future reference, we recommend that you add this command to your configuration (.bashrc, .profile or similar). ---------------------------------------------------------------------------- + cd ../python + VERBOSE=1 + CMAKE_PREFIX_PATH=/builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/cmake + CMAKE_SKIP_INSTALL_RPATH=yes + CMAKE_SKIP_RPATH=yes + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT --prefix /usr running install /usr/lib/python3.13/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13 creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin copying build/lib.linux-aarch64-cpython-313/dolfin/__init__.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/common copying build/lib.linux-aarch64-cpython-313/dolfin/common/__init__.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/common copying build/lib.linux-aarch64-cpython-313/dolfin/common/plotting.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/common copying build/lib.linux-aarch64-cpython-313/dolfin/common/timer.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/common creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function copying build/lib.linux-aarch64-cpython-313/dolfin/function/__init__.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function copying build/lib.linux-aarch64-cpython-313/dolfin/function/argument.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function copying build/lib.linux-aarch64-cpython-313/dolfin/function/constant.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function copying build/lib.linux-aarch64-cpython-313/dolfin/function/expression.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function copying build/lib.linux-aarch64-cpython-313/dolfin/function/function.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function copying build/lib.linux-aarch64-cpython-313/dolfin/function/functionspace.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function copying build/lib.linux-aarch64-cpython-313/dolfin/function/jit.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function copying build/lib.linux-aarch64-cpython-313/dolfin/function/multimeshfunction.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function copying build/lib.linux-aarch64-cpython-313/dolfin/function/multimeshfunctionspace.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function copying build/lib.linux-aarch64-cpython-313/dolfin/function/specialfunctions.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-aarch64-cpython-313/dolfin/fem/__init__.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-aarch64-cpython-313/dolfin/fem/adaptivesolving.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-aarch64-cpython-313/dolfin/fem/assembling.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-aarch64-cpython-313/dolfin/fem/dirichletbc.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-aarch64-cpython-313/dolfin/fem/errorcontrolgenerator.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-aarch64-cpython-313/dolfin/fem/form.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-aarch64-cpython-313/dolfin/fem/formmanipulations.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-aarch64-cpython-313/dolfin/fem/interpolation.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-aarch64-cpython-313/dolfin/fem/multimeshdirichletbc.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-aarch64-cpython-313/dolfin/fem/norms.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-aarch64-cpython-313/dolfin/fem/problem.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-aarch64-cpython-313/dolfin/fem/projection.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-aarch64-cpython-313/dolfin/fem/solvers.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem copying build/lib.linux-aarch64-cpython-313/dolfin/fem/solving.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/la copying build/lib.linux-aarch64-cpython-313/dolfin/la/__init__.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/la copying build/lib.linux-aarch64-cpython-313/dolfin/la/solver.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/la creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/io copying build/lib.linux-aarch64-cpython-313/dolfin/io/__init__.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/io creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/jit copying build/lib.linux-aarch64-cpython-313/dolfin/jit/__init__.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/jit copying build/lib.linux-aarch64-cpython-313/dolfin/jit/jit.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/jit copying build/lib.linux-aarch64-cpython-313/dolfin/jit/pybind11jit.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/jit creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh copying build/lib.linux-aarch64-cpython-313/dolfin/mesh/__init__.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh copying build/lib.linux-aarch64-cpython-313/dolfin/mesh/ale.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh copying build/lib.linux-aarch64-cpython-313/dolfin/mesh/meshfunction.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh copying build/lib.linux-aarch64-cpython-313/dolfin/mesh/meshvaluecollection.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh copying build/lib.linux-aarch64-cpython-313/dolfin/mesh/subdomain.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh copying build/lib.linux-aarch64-cpython-313/dolfin/mesh/svgtools.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh copying build/lib.linux-aarch64-cpython-313/dolfin/mesh/ufl_util.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage copying build/lib.linux-aarch64-cpython-313/dolfin/multistage/__init__.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage copying build/lib.linux-aarch64-cpython-313/dolfin/multistage/factorize.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage copying build/lib.linux-aarch64-cpython-313/dolfin/multistage/multistagescheme.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage copying build/lib.linux-aarch64-cpython-313/dolfin/multistage/multistagesolvers.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage copying build/lib.linux-aarch64-cpython-313/dolfin/multistage/rushlarsenschemes.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/parameter copying build/lib.linux-aarch64-cpython-313/dolfin/parameter/__init__.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/parameter copying build/lib.linux-aarch64-cpython-313/dolfin/cpp.cpython-313-aarch64-linux-gnu.so -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert copying build/lib.linux-aarch64-cpython-313/dolfin_utils/meshconvert/__init__.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert copying build/lib.linux-aarch64-cpython-313/dolfin_utils/meshconvert/abaqus.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert copying build/lib.linux-aarch64-cpython-313/dolfin_utils/meshconvert/meshconvert.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert copying build/lib.linux-aarch64-cpython-313/dolfin_utils/meshconvert/xml_writer.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test copying build/lib.linux-aarch64-cpython-313/dolfin_utils/test/__init__.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test copying build/lib.linux-aarch64-cpython-313/dolfin_utils/test/fixtures.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test copying build/lib.linux-aarch64-cpython-313/dolfin_utils/test/paths.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test copying build/lib.linux-aarch64-cpython-313/dolfin_utils/test/skips.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test creating /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/fenics copying build/lib.linux-aarch64-cpython-313/fenics/__init__.py -> /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/fenics byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/common/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/common/plotting.py to plotting.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/common/timer.py to timer.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/argument.py to argument.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/constant.py to constant.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/expression.py to expression.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/function.py to function.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/functionspace.py to functionspace.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/jit.py to jit.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/multimeshfunction.py to multimeshfunction.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/multimeshfunctionspace.py to multimeshfunctionspace.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/specialfunctions.py to specialfunctions.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/adaptivesolving.py to adaptivesolving.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/assembling.py to assembling.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/dirichletbc.py to dirichletbc.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/errorcontrolgenerator.py to errorcontrolgenerator.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/form.py to form.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/formmanipulations.py to formmanipulations.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/interpolation.py to interpolation.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/multimeshdirichletbc.py to multimeshdirichletbc.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/norms.py to norms.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/problem.py to problem.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/projection.py to projection.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/solvers.py to solvers.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/solving.py to solving.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/la/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/la/solver.py to solver.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/io/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/jit/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/jit/jit.py to jit.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/jit/pybind11jit.py to pybind11jit.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh/ale.py to ale.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh/meshfunction.py to meshfunction.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh/meshvaluecollection.py to meshvaluecollection.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh/subdomain.py to subdomain.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh/svgtools.py to svgtools.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/mesh/ufl_util.py to ufl_util.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage/factorize.py to factorize.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage/multistagescheme.py to multistagescheme.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage/multistagesolvers.py to multistagesolvers.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage/rushlarsenschemes.py to rushlarsenschemes.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/parameter/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/abaqus.py to abaqus.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py to meshconvert.cpython-313.pyc /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:509: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:865: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:1187: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:1189: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:1191: SyntaxWarning: invalid escape sequence '\s' byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/xml_writer.py to xml_writer.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test/__init__.py to __init__.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test/fixtures.py to fixtures.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test/paths.py to paths.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test/skips.py to skips.cpython-313.pyc byte-compiling /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/fenics/__init__.py to __init__.cpython-313.pyc writing byte-compilation script '/tmp/tmpn6_fwu0v.py' /usr/bin/python3 /tmp/tmpn6_fwu0v.py /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:509: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:865: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:1187: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:1189: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:1191: SyntaxWarning: invalid escape sequence '\s' removing /tmp/tmpn6_fwu0v.py running install_egg_info running egg_info creating fenics_dolfin.egg-info writing fenics_dolfin.egg-info/PKG-INFO writing dependency_links to fenics_dolfin.egg-info/dependency_links.txt writing requirements to fenics_dolfin.egg-info/requires.txt writing top-level names to fenics_dolfin.egg-info/top_level.txt writing manifest file 'fenics_dolfin.egg-info/SOURCES.txt' reading manifest file 'fenics_dolfin.egg-info/SOURCES.txt' writing manifest file 'fenics_dolfin.egg-info/SOURCES.txt' Copying fenics_dolfin.egg-info to /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/fenics_dolfin-2019.1.0-py3.13.egg-info running install_scripts + rm -rfv /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/bin/__pycache__ + sed -r -i '1 {s|#!/usr/bin/env python.*|#!/usr/bin/python3|}' /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/bin/dolfin-order /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/bin/dolfin-plot /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/bin/dolfin-convert + rm /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/dolfin/dolfin.conf + chrpath /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/cpp.cpython-313-aarch64-linux-gnu.so /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/cpp.cpython-313-aarch64-linux-gnu.so: RUNPATH=/builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64 + chrpath --delete /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/cpp.cpython-313-aarch64-linux-gnu.so + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 2019.1.0.post0-55.fc42 --unique-debug-suffix -2019.1.0.post0-55.fc42.aarch64 --unique-debug-src-base dolfin-2019.1.0.post0-55.fc42.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/dolfin-2019.1.0.post0-55.fc42.aarch64 find-debuginfo: done + /usr/lib/rpm/check-buildroot /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/cpp.cpython-313-aarch64-linux-gnu.so Found '/builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT' in installed files; aborting + : + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/bin/dolfin-version from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/bin/fenics-version from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/bin/dolfin-get-demos from /bin/bash to #!/usr/bin/bash + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13 using python3.13 /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:509: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:865: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:1187: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:1189: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:1191: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:509: SyntaxWarning: invalid escape sequence '\ ' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:865: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:1187: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:1189: SyntaxWarning: invalid escape sequence '\s' /usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/meshconvert.py:1191: SyntaxWarning: invalid escape sequence '\s' + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/common/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/common/__pycache__/timer.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/__pycache__/argument.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/common/__pycache__/plotting.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/__pycache__/constant.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/common/__pycache__/plotting.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/__pycache__/jit.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/__pycache__/functionspace.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/__pycache__/function.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/__pycache__/multimeshfunctionspace.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/__pycache__/expression.cpython-313.pyc: replacing with normalized version 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/builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__pycache__/form.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__pycache__/multimeshdirichletbc.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__pycache__/formmanipulations.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__pycache__/projection.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__pycache__/solvers.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/function/__pycache__/expression.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__pycache__/problem.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__pycache__/adaptivesolving.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__pycache__/norms.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__pycache__/solving.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/la/__pycache__/solver.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/fem/__pycache__/solving.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/io/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/jit/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/la/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents 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/builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/__pycache__/abaqus.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage/__pycache__/multistagescheme.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/__pycache__/xml_writer.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin/multistage/__pycache__/multistagescheme.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/__pycache__/abaqus.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test/__pycache__/paths.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test/__pycache__/fixtures.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test/__pycache__/skips.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/fenics/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/test/__pycache__/paths.cpython-313.opt-1.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/__pycache__/meshconvert.cpython-313.pyc: replacing with normalized version /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/lib64/python3.13/site-packages/dolfin_utils/meshconvert/__pycache__/meshconvert.cpython-313.opt-1.pyc: replacing with normalized version Scanned 196 directories and 1194 files, processed 67 inodes, 67 modified (22 replaced + 45 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/dolfin-2019.1.0.post0-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.JtEYSP + umask 022 + cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd dolfin-2019.1.0.post0 + ctest -V -j4 UpdateCTestConfiguration from :/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/DartConfiguration.tcl UpdateCTestConfiguration from :/builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/DartConfiguration.tcl Test project /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0 Constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end No tests were found!!! + RPM_EC=0 ++ jobs -p + exit 0 Processing files: dolfin-2019.1.0.post0-55.fc42.aarch64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.0QEnq4 + umask 022 + cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build + cd dolfin-2019.1.0.post0 + DOCDIR=/builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/doc/dolfin + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/doc/dolfin + cp -pr /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/README.rst /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/doc/dolfin + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.G8LX5f + umask 022 + cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build + cd dolfin-2019.1.0.post0 + LICENSEDIR=/builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/licenses/dolfin + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/licenses/dolfin + cp -pr /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/COPYING /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/licenses/dolfin + cp -pr /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/COPYING.LESSER /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/licenses/dolfin + cp -pr /builddir/build/BUILD/dolfin-2019.1.0.post0-build/dolfin-2019.1.0.post0/AUTHORS /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT/usr/share/licenses/dolfin + RPM_EC=0 ++ jobs -p + exit 0 Provides: dolfin = 2019.1.0.post0-55.fc42 dolfin(aarch-64) = 2019.1.0.post0-55.fc42 libdolfin.so.2019.1()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libboost_filesystem.so.1.83.0()(64bit) libboost_iostreams.so.1.83.0()(64bit) libboost_program_options.so.1.83.0()(64bit) libboost_timer.so.1.83.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.310()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libpetsc.so.3.22()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: dolfin-devel-2019.1.0.post0-55.fc42.aarch64 Provides: dolfin-devel = 2019.1.0.post0-55.fc42 dolfin-devel(aarch-64) = 2019.1.0.post0-55.fc42 pkgconfig(dolfin) = 2019.1.0 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config libdolfin.so.2019.1()(64bit) Processing files: python3-dolfin-2019.1.0.post0-55.fc42.aarch64 Provides: python-dolfin = 2019.1.0.post0-55.fc42 python3-dolfin = 2019.1.0.post0-55.fc42 python3-dolfin(aarch-64) = 2019.1.0.post0-55.fc42 python3.13-dolfin = 2019.1.0.post0-55.fc42 python3.13dist(fenics-dolfin) = 2019.1 python3dist(fenics-dolfin) = 2019.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: (python3.13dist(fenics-dijitso) < 2019.2~~ with python3.13dist(fenics-dijitso) >= 2019.1) (python3.13dist(fenics-ffc) < 2019.2~~ with python3.13dist(fenics-ffc) >= 2019.1) (python3.13dist(fenics-ufl) < 2019.2~~ with python3.13dist(fenics-ufl) >= 2019.1) /usr/bin/python3 ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libdolfin.so.2019.1()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.13 python3.13dist(numpy) python3.13dist(pkgconfig) python3.13dist(pybind11) >= 2.2.4 rtld(GNU_HASH) Obsoletes: python-dolfin < 2019.1.0.post0-55.fc42 Processing files: dolfin-doc-2019.1.0.post0-55.fc42.noarch Provides: dolfin-doc = 2019.1.0.post0-55.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash Processing files: dolfin-debugsource-2019.1.0.post0-55.fc42.aarch64 Provides: dolfin-debugsource = 2019.1.0.post0-55.fc42 dolfin-debugsource(aarch-64) = 2019.1.0.post0-55.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: dolfin-debuginfo-2019.1.0.post0-55.fc42.aarch64 Provides: debuginfo(build-id) = a951ca3a7f742b0fce6c4587f3ad72fd434fbe10 dolfin-debuginfo = 2019.1.0.post0-55.fc42 dolfin-debuginfo(aarch-64) = 2019.1.0.post0-55.fc42 libdolfin.so.2019.1.0-2019.1.0.post0-55.fc42.aarch64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: dolfin-debugsource(aarch-64) = 2019.1.0.post0-55.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/dolfin-2019.1.0.post0-build/BUILDROOT Wrote: /builddir/build/RPMS/dolfin-2019.1.0.post0-55.fc42.aarch64.rpm Wrote: /builddir/build/RPMS/dolfin-doc-2019.1.0.post0-55.fc42.noarch.rpm Wrote: /builddir/build/RPMS/dolfin-debugsource-2019.1.0.post0-55.fc42.aarch64.rpm Wrote: /builddir/build/RPMS/dolfin-devel-2019.1.0.post0-55.fc42.aarch64.rpm Wrote: /builddir/build/RPMS/python3-dolfin-2019.1.0.post0-55.fc42.aarch64.rpm Wrote: /builddir/build/RPMS/dolfin-debuginfo-2019.1.0.post0-55.fc42.aarch64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.cIP5Vk + umask 022 + cd /builddir/build/BUILD/dolfin-2019.1.0.post0-build + test -d /builddir/build/BUILD/dolfin-2019.1.0.post0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/dolfin-2019.1.0.post0-build + rm -rf /builddir/build/BUILD/dolfin-2019.1.0.post0-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild dolfin-2019.1.0.post0-55.fc42.src.rpm Finish: build phase for dolfin-2019.1.0.post0-55.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-aarch64-1736239149.761532/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/dolfin-2019.1.0.post0-55.fc42.src.rpm) Config(child) 7 minutes 36 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "dolfin-doc", "epoch": null, "version": "2019.1.0.post0", "release": "55.fc42", "arch": "noarch" }, { "name": "dolfin", "epoch": null, "version": "2019.1.0.post0", "release": "55.fc42", "arch": "aarch64" }, { "name": "dolfin-debugsource", "epoch": null, "version": "2019.1.0.post0", "release": "55.fc42", "arch": "aarch64" }, { "name": "dolfin-debuginfo", "epoch": null, "version": "2019.1.0.post0", "release": "55.fc42", "arch": "aarch64" }, { "name": "python3-dolfin", "epoch": null, "version": "2019.1.0.post0", "release": "55.fc42", "arch": "aarch64" }, { "name": "dolfin-devel", "epoch": null, "version": "2019.1.0.post0", "release": "55.fc42", "arch": "aarch64" }, { "name": "dolfin", "epoch": null, "version": "2019.1.0.post0", "release": "55.fc42", "arch": "src" } ] } RPMResults finished