Warning: Permanently added '35.175.143.95' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8598702-fedora-41-aarch64 --chroot fedora-41-aarch64


Version: 1.2
PID: 162132
Logging PID: 162133
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': True,
 'build_id': 8598702,
 'buildroot_pkgs': [],
 'chroot': 'fedora-41-aarch64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '8502f10bd792852cc5cca67b7c1e5ee04addc0b0',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/mmseq',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'mmseq',
 'package_version': '1.0.11-23',
 'project_dirname': 'openblas-0.3.23',
 'project_name': 'openblas-0.3.23',
 'project_owner': 'psimovec',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-41-aarch64/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None},
           {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/',
            'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch',
            'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}],
 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/orion',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'storage': None,
 'submitter': 'https://src.fedoraproject.org/user/orion',
 'tags': [],
 'task_id': '8598702-fedora-41-aarch64',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/mmseq /var/lib/copr-rpmbuild/workspace/workdir-nfkrh2m5/mmseq --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/mmseq', '/var/lib/copr-rpmbuild/workspace/workdir-nfkrh2m5/mmseq', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-nfkrh2m5/mmseq'...

Running: git checkout 8502f10bd792852cc5cca67b7c1e5ee04addc0b0 --

cmd: ['git', 'checkout', '8502f10bd792852cc5cca67b7c1e5ee04addc0b0', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-nfkrh2m5/mmseq
rc: 0
stdout: 
stderr: Note: switching to '8502f10bd792852cc5cca67b7c1e5ee04addc0b0'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 8502f10 automatic import of mmseq

Running: dist-git-client sources

cmd: ['dist-git-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-nfkrh2m5/mmseq
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading 1.0.11.zip
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o 1.0.11.zip --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/mmseq/1.0.11.zip/md5/c727916d339d7a2111523800b621ce2b/1.0.11.zip
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 2781k  100 2781k    0     0  25.6M      0 --:--:-- --:--:-- --:--:-- 25.8M
INFO: Reading stdout from command: md5sum 1.0.11.zip

/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-nfkrh2m5/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-nfkrh2m5/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1738532761.194760 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 6.0 starting (python version = 3.13.0, NVR = mock-6.0-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-nfkrh2m5/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-nfkrh2m5/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1738532761.194760 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-nfkrh2m5/mmseq/mmseq.spec)  Config(fedora-41-aarch64)
Start: clean chroot
Finish: clean chroot
Mock Version: 6.0
INFO: Mock Version: 6.0
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-41-aarch64-bootstrap-1738532761.194760/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using container image: registry.fedoraproject.org/fedora:41
INFO: Pulling image: registry.fedoraproject.org/fedora:41
INFO: Tagging container image as mock-bootstrap-5c0d7aaa-f633-4979-8a57-f7d6632aff39
INFO: Checking that 7ac3020af3f05d0c7a555e02fd76d64b4ceca4f01b9e721e7d9d4a5ca2fc198f image matches host's architecture
INFO: Copy content of container 7ac3020af3f05d0c7a555e02fd76d64b4ceca4f01b9e721e7d9d4a5ca2fc198f to /var/lib/mock/fedora-41-aarch64-bootstrap-1738532761.194760/root
INFO: mounting 7ac3020af3f05d0c7a555e02fd76d64b4ceca4f01b9e721e7d9d4a5ca2fc198f with podman image mount
INFO: image 7ac3020af3f05d0c7a555e02fd76d64b4ceca4f01b9e721e7d9d4a5ca2fc198f as /var/lib/containers/storage/overlay/b437ea2d28c303555d1070e6c11b4501f99b5186f2c254cec1e52a9e23930b79/merged
INFO: umounting image 7ac3020af3f05d0c7a555e02fd76d64b4ceca4f01b9e721e7d9d4a5ca2fc198f (/var/lib/containers/storage/overlay/b437ea2d28c303555d1070e6c11b4501f99b5186f2c254cec1e52a9e23930b79/merged) with podman image umount
INFO: Removing image mock-bootstrap-5c0d7aaa-f633-4979-8a57-f7d6632aff39
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-41-aarch64-1738532761.194760/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.20.0-1.fc41.aarch64
  rpm-sequoia-1.7.0-3.fc41.aarch64
  dnf5-5.2.8.1-3.fc41.aarch64
  dnf5-plugins-5.2.8.1-3.fc41.aarch64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 updates                                100% | 510.3 KiB/s |  15.8 KiB |  00m00s
 fedora                                 100% |  97.1 KiB/s |  16.8 KiB |  00m00s
 Copr repository                        100% |  85.4 KiB/s |   1.5 KiB |  00m00s
 Additional repo http_kojipkgs_fedorapr 100% | 212.8 KiB/s |   3.8 KiB |  00m00s
 Copr repository                        100% |  53.7 MiB/s |   3.2 MiB |  00m00s
Repositories loaded.
Package                            Arch    Version                    Repository                                                         Size
Installing group/module packages:
 bash                              aarch64 5.2.37-1.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.2 MiB
 bzip2                             aarch64 1.0.8-20.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 171.3 KiB
 coreutils                         aarch64 9.6-1.fc42                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.2 MiB
 cpio                              aarch64 2.15-2.fc41                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 diffutils                         aarch64 3.10-9.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 fedora-release-common             noarch  42-0.16                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  19.8 KiB
 findutils                         aarch64 1:4.10.0-5.fc42            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 MiB
 gawk                              aarch64 5.3.1-1.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.4 MiB
 glibc-minimal-langpack            aarch64 2.40.9000-35.fc42          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 grep                              aarch64 3.11-10.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 gzip                              aarch64 1.13-3.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 424.7 KiB
 info                              aarch64 7.2-3.fc42                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 421.6 KiB
 patch                             aarch64 2.7.6-26.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 262.4 KiB
 redhat-rpm-config                 noarch  342-1.fc42                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 186.8 KiB
 rpm-build                         aarch64 4.20.0-8.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 524.9 KiB
 sed                               aarch64 4.9-4.fc42                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 873.2 KiB
 shadow-utils                      aarch64 2:4.17.0-4.fc42            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.5 MiB
 tar                               aarch64 2:1.35-5.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.0 MiB
 unzip                             aarch64 6.0-66.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 470.2 KiB
 util-linux                        aarch64 2.40.4-2.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.6 MiB
 which                             aarch64 2.22-2.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 123.1 KiB
 xz                                aarch64 1:5.6.3-3.fc42             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 MiB
Installing dependencies:
 add-determinism                   aarch64 0.5.0-2.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 MiB
 alternatives                      aarch64 1.31-3.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  90.1 KiB
 ansible-srpm-macros               noarch  1-17.1.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.7 KiB
 audit-libs                        aarch64 4.0.3-2.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 415.2 KiB
 authselect                        aarch64 1.5.0-9.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 179.9 KiB
 authselect-libs                   aarch64 1.5.0-9.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 865.5 KiB
 basesystem                        noarch  11-22.fc42                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 binutils                          aarch64 2.43.50-12.fc42            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  29.2 MiB
 build-reproducibility-srpm-macros noarch  0.5.0-2.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 735.0   B
 bzip2-libs                        aarch64 1.0.8-20.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  72.6 KiB
 ca-certificates                   noarch  2024.2.69_v8.0.401-5.fc42  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.6 MiB
 coreutils-common                  aarch64 9.6-1.fc42                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.1 MiB
 cracklib                          aarch64 2.9.11-7.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 422.3 KiB
 crypto-policies                   noarch  20250124-1.git4d262e7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 137.4 KiB
 curl                              aarch64 8.11.1-3.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 454.7 KiB
 cyrus-sasl-lib                    aarch64 2.1.28-30.fc42             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.4 MiB
 dbus                              aarch64 1:1.16.0-3.fc42            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 dbus-broker                       aarch64 36-5.fc42                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 421.9 KiB
 dbus-common                       noarch  1:1.16.0-3.fc42            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.2 KiB
 debugedit                         aarch64 5.1-4.fc42                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 244.3 KiB
 dwz                               aarch64 0.15-9.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 322.6 KiB
 ed                                aarch64 1.21-2.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 154.5 KiB
 efi-srpm-macros                   noarch  6-2.fc42                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  40.1 KiB
 elfutils                          aarch64 0.192-8.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.1 MiB
 elfutils-debuginfod-client        aarch64 0.192-8.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 143.9 KiB
 elfutils-default-yama-scope       noarch  0.192-8.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 KiB
 elfutils-libelf                   aarch64 0.192-8.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 elfutils-libs                     aarch64 0.192-8.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 746.3 KiB
 expat                             aarch64 2.6.4-2.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 348.7 KiB
 fedora-gpg-keys                   noarch  42-0.4                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 128.2 KiB
 fedora-release                    noarch  42-0.16                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 fedora-release-identity-basic     noarch  42-0.16                    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 719.0   B
 fedora-repos                      noarch  42-0.4                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.9 KiB
 fedora-repos-rawhide              noarch  42-0.4                     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 KiB
 file                              aarch64 5.45-9.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 139.3 KiB
 file-libs                         aarch64 5.45-9.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  10.0 MiB
 filesystem                        aarch64 3.18-36.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.0   B
 filesystem-srpm-macros            noarch  3.18-36.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  38.2 KiB
 fonts-srpm-macros                 noarch  1:2.0.5-21.fc42            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  55.8 KiB
 forge-srpm-macros                 noarch  0.4.0-2.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  38.9 KiB
 fpc-srpm-macros                   noarch  1.3-14.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.0   B
 gdb-minimal                       aarch64 15.2-7.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  12.8 MiB
 gdbm                              aarch64 1:1.23-9.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 543.9 KiB
 gdbm-libs                         aarch64 1:1.23-9.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 234.0 KiB
 ghc-srpm-macros                   noarch  1.9.2-2.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 779.0   B
 glibc                             aarch64 2.40.9000-35.fc42          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.2 MiB
 glibc-common                      aarch64 2.40.9000-35.fc42          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 MiB
 glibc-gconv-extra                 aarch64 2.40.9000-35.fc42          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  18.6 MiB
 gmp                               aarch64 1:6.3.0-2.fc41             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 722.0 KiB
 gnat-srpm-macros                  noarch  6-7.fc42                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 KiB
 go-srpm-macros                    noarch  3.6.0-6.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  60.8 KiB
 jansson                           aarch64 2.14-2.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  93.2 KiB
 json-c                            aarch64 0.18-2.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 138.7 KiB
 kernel-srpm-macros                noarch  1.0-25.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 keyutils-libs                     aarch64 1.6.3-5.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  98.3 KiB
 krb5-libs                         aarch64 1.21.3-5.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.5 MiB
 libacl                            aarch64 2.3.2-3.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  66.3 KiB
 libarchive                        aarch64 3.7.7-2.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 910.6 KiB
 libattr                           aarch64 2.5.2-5.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  67.1 KiB
 libblkid                          aarch64 2.40.4-2.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 290.5 KiB
 libbrotli                         aarch64 1.1.0-6.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 909.5 KiB
 libcap                            aarch64 2.73-2.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 506.8 KiB
 libcap-ng                         aarch64 0.8.5-4.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 160.9 KiB
 libcom_err                        aarch64 1.47.2-3.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 111.2 KiB
 libcurl                           aarch64 8.11.1-3.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 794.0 KiB
 libeconf                          aarch64 0.7.5-2.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  80.5 KiB
 libevent                          aarch64 2.1.12-15.fc42             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 MiB
 libfdisk                          aarch64 2.40.4-2.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 418.8 KiB
 libffi                            aarch64 3.4.6-5.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 154.4 KiB
 libgcc                            aarch64 15.0.1-0.6.fc42            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 222.2 KiB
 libgomp                           aarch64 15.0.1-0.6.fc42            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 511.2 KiB
 libidn2                           aarch64 2.3.7-3.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 329.0 KiB
 libmount                          aarch64 2.40.4-2.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 355.8 KiB
 libnghttp2                        aarch64 1.64.0-3.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 198.1 KiB
 libnsl2                           aarch64 2.0.1-3.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  93.9 KiB
 libpkgconf                        aarch64 2.3.0-2.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 134.0 KiB
 libpsl                            aarch64 0.21.5-5.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 132.5 KiB
 libpwquality                      aarch64 1.4.5-12.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 609.3 KiB
 libseccomp                        aarch64 2.5.5-2.fc41               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 241.4 KiB
 libselinux                        aarch64 3.8-1.fc42                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 201.1 KiB
 libsemanage                       aarch64 3.8-1.fc42                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 360.0 KiB
 libsepol                          aarch64 3.8-1.fc42                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 809.9 KiB
 libsmartcols                      aarch64 2.40.4-2.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 224.4 KiB
 libssh                            aarch64 0.11.1-4.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 585.4 KiB
 libssh-config                     noarch  0.11.1-4.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 277.0   B
 libstdc++                         aarch64 15.0.1-0.6.fc42            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.8 MiB
 libtasn1                          aarch64 4.19.0-11.fc42             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 219.6 KiB
 libtirpc                          aarch64 1.3.6-1.rc3.fc42.2         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 210.7 KiB
 libtool-ltdl                      aarch64 2.5.4-4.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  94.0 KiB
 libunistring                      aarch64 1.1-9.fc42                 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.7 MiB
 libuuid                           aarch64 2.40.4-2.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  69.4 KiB
 libverto                          aarch64 0.3.2-10.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  69.4 KiB
 libxcrypt                         aarch64 4.4.38-4.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 272.0 KiB
 libxml2                           aarch64 2.12.9-2.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 MiB
 libzstd                           aarch64 1.5.6-3.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 667.7 KiB
 lua-libs                          aarch64 5.4.7-2.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 328.9 KiB
 lua-srpm-macros                   noarch  1-15.fc42                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.3 KiB
 lz4-libs                          aarch64 1.10.0-2.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 197.4 KiB
 mpfr                              aarch64 4.2.1-6.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 754.6 KiB
 ncurses-base                      noarch  6.5-5.20250125.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 326.8 KiB
 ncurses-libs                      aarch64 6.5-5.20250125.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 ocaml-srpm-macros                 noarch  10-4.fc42                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 openblas-srpm-macros              noarch  2-19.fc42                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.0   B
 openldap                          aarch64 2.6.9-3.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 697.3 KiB
 openssl-libs                      aarch64 1:3.2.2-14.fc42            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.3 MiB
 p11-kit                           aarch64 0.25.5-5.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.4 MiB
 p11-kit-trust                     aarch64 0.25.5-5.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 463.3 KiB
 package-notes-srpm-macros         noarch  0.5-13.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 KiB
 pam                               aarch64 1.7.0-4.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.2 MiB
 pam-libs                          aarch64 1.7.0-4.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 222.9 KiB
 pcre2                             aarch64 10.44-1.fc42.2             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 649.2 KiB
 pcre2-syntax                      noarch  10.44-1.fc42.2             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 251.6 KiB
 perl-srpm-macros                  noarch  1-57.fc42                  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0   B
 pkgconf                           aarch64 2.3.0-2.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.4 KiB
 pkgconf-m4                        noarch  2.3.0-2.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  14.4 KiB
 pkgconf-pkg-config                aarch64 2.3.0-2.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 990.0   B
 popt                              aarch64 1.19-8.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.8 KiB
 publicsuffix-list-dafsa           noarch  20250116-1.fc42            http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  68.5 KiB
 pyproject-srpm-macros             noarch  1.16.4-2.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.9 KiB
 python-srpm-macros                noarch  3.13-4.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  51.0 KiB
 qt5-srpm-macros                   noarch  5.15.15-1.fc42             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 500.0   B
 qt6-srpm-macros                   noarch  6.8.1-5.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0   B
 readline                          aarch64 8.2-12.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 561.1 KiB
 rpm                               aarch64 4.20.0-8.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.3 MiB
 rpm-build-libs                    aarch64 4.20.0-8.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 198.6 KiB
 rpm-libs                          aarch64 4.20.0-8.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 733.5 KiB
 rpm-sequoia                       aarch64 1.7.0-4.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 rust-srpm-macros                  noarch  26.3-4.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.8 KiB
 setup                             noarch  2.15.0-10.fc42             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.7 KiB
 sqlite-libs                       aarch64 3.47.2-2.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
 systemd                           aarch64 257.2-17.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  20.1 MiB
 systemd-libs                      aarch64 257.2-17.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 systemd-pam                       aarch64 257.2-17.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 systemd-rpm-macros                noarch  257.2-17.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  10.7 KiB
 util-linux-core                   aarch64 2.40.4-2.fc42              http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.3 MiB
 xxhash-libs                       aarch64 0.8.3-2.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  85.9 KiB
 xz-libs                           aarch64 1:5.6.3-3.fc42             http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 202.3 KiB
 zig-srpm-macros                   noarch  1-4.fc42                   http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.1 KiB
 zip                               aarch64 3.0-43.fc42                http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 762.5 KiB
 zlib-ng-compat                    aarch64 2.2.3-2.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 133.4 KiB
 zstd                              aarch64 1.5.6-3.fc42               http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
Installing groups:
 Buildsystem building group                                                                                                                  

Transaction Summary:
 Installing:       163 packages

Total size of inbound packages is 58 MiB. Need to download 4 MiB.
After this operation, 228 MiB extra will be used (install 228 MiB, remove 0 B).
[1/1] tar-2:1.35-5.fc42.aarch64         100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[1/1] Total                             100% |   0.0   B/s |   0.0   B |  00m00s
[1/2] bzip2-0:1.0.8-20.fc42.aarch64     100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[2/2] Total                             100% |   0.0   B/s |   0.0   B |  00m00s
[1/3] redhat-rpm-config-0:342-1.fc42.no 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[3/3] Total                             100% |   0.0   B/s |   0.0   B |  00m00s
[1/4] rpm-build-0:4.20.0-8.fc42.aarch64 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[4/4] Total                             100% |   0.0   B/s |   0.0   B |  00m00s
[1/5] unzip-0:6.0-66.fc42.aarch64       100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[5/5] Total                             100% |   0.0   B/s |   0.0   B |  00m00s
[1/6] cpio-0:2.15-2.fc41.aarch64        100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[6/6] Total                             100% |   0.0   B/s |   0.0   B |  00m00s
[1/7] which-0:2.22-2.fc42.aarch64       100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[7/7] Total                             100% |   0.0   B/s |   0.0   B |  00m00s
[1/8] bash-0:5.2.37-1.fc42.aarch64      100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[8/8] Total                             100% |   0.0   B/s |   0.0   B |  00m00s
[1/9] coreutils-0:9.6-1.fc42.aarch64    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[9/9] Total                             100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/10] grep-0:3.11-10.fc42.aarch64     100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[10/10] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/11] patch-0:2.7.6-26.fc42.aarch64   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[11/11] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/12] sed-0:4.9-4.fc42.aarch64        100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[12/12] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/13] shadow-utils-2:4.17.0-4.fc42.aa 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[13/13] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/14] util-linux-0:2.40.4-2.fc42.aarc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[14/14] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/15] diffutils-0:3.10-9.fc42.aarch64 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[15/15] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/16] fedora-release-common-0:42-0.16 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[16/16] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/17] findutils-1:4.10.0-5.fc42.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[17/17] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/18] gawk-0:5.3.1-1.fc42.aarch64     100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[18/18] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/19] glibc-minimal-langpack-0:2.40.9 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[19/19] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/20] gzip-0:1.13-3.fc42.aarch64      100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[20/20] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/21] info-0:7.2-3.fc42.aarch64       100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[21/21] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/22] xz-1:5.6.3-3.fc42.aarch64       100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[22/22] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/23] filesystem-srpm-macros-0:3.18-3 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[23/23] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/24] rpm-0:4.20.0-8.fc42.aarch64     100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[24/24] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/25] coreutils-common-0:9.6-1.fc42.a 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[25/25] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/26] filesystem-0:3.18-36.fc42.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[26/26] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/27] glibc-0:2.40.9000-35.fc42.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[27/27] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/28] libblkid-0:2.40.4-2.fc42.aarch6 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[28/28] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/29] libfdisk-0:2.40.4-2.fc42.aarch6 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[29/29] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/30] libmount-0:2.40.4-2.fc42.aarch6 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[30/30] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/31] libsmartcols-0:2.40.4-2.fc42.aa 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[31/31] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/32] libuuid-0:2.40.4-2.fc42.aarch64 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[32/32] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/33] util-linux-core-0:2.40.4-2.fc42 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[33/33] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/34] fedora-repos-0:42-0.4.noarch    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[34/34] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/35] glibc-common-0:2.40.9000-35.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[35/35] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/36] xz-libs-1:5.6.3-3.fc42.aarch64  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[36/36] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/37] glibc-gconv-extra-0:2.40.9000-3 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[37/37] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/38] fedora-gpg-keys-0:42-0.4.noarch 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[38/38] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/39] fedora-repos-rawhide-0:42-0.4.n 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[39/39] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/40] rpm-libs-0:4.20.0-8.fc42.aarch6 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[40/40] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/41] rpm-build-libs-0:4.20.0-8.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[41/41] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/42] libxcrypt-0:4.4.38-4.fc42.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[42/42] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/43] systemd-libs-0:257.2-17.fc42.aa 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[43/43] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/44] libselinux-0:3.8-1.fc42.aarch64 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[44/44] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/45] libsepol-0:3.8-1.fc42.aarch64   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[45/45] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/46] ncurses-libs-0:6.5-5.20250125.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[46/46] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/47] ncurses-base-0:6.5-5.20250125.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[47/47] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/48] audit-libs-0:4.0.3-2.fc42.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[48/48] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/49] pam-0:1.7.0-4.fc42.aarch64      100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[49/49] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/50] libeconf-0:0.7.5-2.fc42.aarch64 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[50/50] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/51] pam-libs-0:1.7.0-4.fc42.aarch64 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[51/51] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/52] zlib-ng-compat-0:2.2.3-2.fc42.a 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[52/52] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/53] authselect-libs-0:1.5.0-9.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[53/53] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/54] authselect-0:1.5.0-9.fc42.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[54/54] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/55] libcap-ng-0:0.8.5-4.fc42.aarch6 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[55/55] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/56] readline-0:8.2-12.fc42.aarch64  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[56/56] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/57] bzip2-libs-0:1.0.8-20.fc42.aarc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[57/57] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/58] libacl-0:2.3.2-3.fc42.aarch64   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[58/58] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/59] libgcc-0:15.0.1-0.6.fc42.aarch6 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[59/59] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/60] libcap-0:2.73-2.fc42.aarch64    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[60/60] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/61] setup-0:2.15.0-10.fc42.noarch   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[61/61] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/62] libsemanage-0:3.8-1.fc42.aarch6 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[62/62] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/63] rpm-sequoia-0:1.7.0-4.fc42.aarc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[63/63] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/64] sqlite-libs-0:3.47.2-2.fc42.aar 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[64/64] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/65] libzstd-0:1.5.6-3.fc42.aarch64  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[65/65] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/66] lua-libs-0:5.4.7-2.fc42.aarch64 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[66/66] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/67] popt-0:1.19-8.fc42.aarch64      100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[67/67] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/68] elfutils-libelf-0:0.192-8.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[68/68] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/69] elfutils-libs-0:0.192-8.fc42.aa 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[69/69] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/70] elfutils-0:0.192-8.fc42.aarch64 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[70/70] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/71] elfutils-debuginfod-client-0:0. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[71/71] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/72] libgomp-0:15.0.1-0.6.fc42.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[72/72] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/73] file-libs-0:5.45-9.fc42.aarch64 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[73/73] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/74] file-0:5.45-9.fc42.aarch64      100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[74/74] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/75] binutils-0:2.43.50-12.fc42.aarc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[75/75] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/76] alternatives-0:1.31-3.fc42.aarc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[76/76] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/77] jansson-0:2.14-2.fc42.aarch64   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[77/77] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/78] debugedit-0:5.1-4.fc42.aarch64  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[78/78] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/79] libarchive-0:3.7.7-2.fc42.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[79/79] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/80] pkgconf-pkg-config-0:2.3.0-2.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[80/80] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/81] pkgconf-0:2.3.0-2.fc42.aarch64  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[81/81] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/82] pkgconf-m4-0:2.3.0-2.fc42.noarc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[82/82] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/83] libpkgconf-0:2.3.0-2.fc42.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[83/83] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/84] zstd-0:1.5.6-3.fc42.aarch64     100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[84/84] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/85] curl-0:8.11.1-3.fc42.aarch64    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[85/85] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/86] build-reproducibility-srpm-macr 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[86/86] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/87] add-determinism-0:0.5.0-2.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[87/87] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/88] efi-srpm-macros-0:6-2.fc42.noar 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[88/88] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/89] forge-srpm-macros-0:0.4.0-2.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[89/89] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/90] go-srpm-macros-0:3.6.0-6.fc42.n 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[90/90] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/91] pyproject-srpm-macros-0:1.16.4- 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[91/91] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/92] qt6-srpm-macros-0:6.8.1-5.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[92/92] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/93] ansible-srpm-macros-0:1-17.1.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[93/93] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/94] dwz-0:0.15-9.fc42.aarch64       100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[94/94] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/95] fonts-srpm-macros-1:2.0.5-21.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[95/95] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/96] fpc-srpm-macros-0:1.3-14.fc42.n 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[96/96] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/97] ghc-srpm-macros-0:1.9.2-2.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[97/97] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/98] gnat-srpm-macros-0:6-7.fc42.noa 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[98/98] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/99] kernel-srpm-macros-0:1.0-25.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[99/99] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[  1/100] lua-srpm-macros-0:1-15.fc42.n 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[100/100] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/101] ocaml-srpm-macros-0:10-4.fc42 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[101/101] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/102] openblas-srpm-macros-0:2-19.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[102/102] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/103] package-notes-srpm-macros-0:0 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[103/103] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/104] perl-srpm-macros-0:1-57.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[104/104] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/105] python-srpm-macros-0:3.13-4.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[105/105] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/106] qt5-srpm-macros-0:5.15.15-1.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[106/106] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/107] rust-srpm-macros-0:26.3-4.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[107/107] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/108] zig-srpm-macros-0:1-4.fc42.no 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[108/108] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/109] zip-0:3.0-43.fc42.aarch64     100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[109/109] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/110] ed-0:1.21-2.fc42.aarch64      100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[110/110] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/111] libattr-0:2.5.2-5.fc42.aarch6 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[111/111] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/112] libtirpc-0:1.3.6-1.rc3.fc42.2 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[112/112] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/113] openssl-libs-1:3.2.2-14.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[113/113] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/114] gdbm-1:1.23-9.fc42.aarch64    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[114/114] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/115] gdbm-libs-1:1.23-9.fc42.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[115/115] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/116] libnsl2-0:2.0.1-3.fc42.aarch6 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[116/116] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/117] libpwquality-0:1.4.5-12.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[117/117] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/118] crypto-policies-0:20250124-1. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[118/118] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/119] ca-certificates-0:2024.2.69_v 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[119/119] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/120] krb5-libs-0:1.21.3-5.fc42.aar 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[120/120] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/121] libcom_err-0:1.47.2-3.fc42.aa 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[121/121] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/122] pcre2-0:10.44-1.fc42.2.aarch6 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[122/122] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/123] pcre2-syntax-0:10.44-1.fc42.2 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[123/123] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/124] cracklib-0:2.9.11-7.fc42.aarc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[124/124] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/125] libxml2-0:2.12.9-2.fc42.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[125/125] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/126] lz4-libs-0:1.10.0-2.fc42.aarc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[126/126] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/127] keyutils-libs-0:1.6.3-5.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[127/127] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/128] libverto-0:0.3.2-10.fc42.aarc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[128/128] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/129] basesystem-0:11-22.fc42.noarc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[129/129] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/130] gmp-1:6.3.0-2.fc41.aarch64    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[130/130] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/131] mpfr-0:4.2.1-6.fc42.aarch64   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[131/131] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/132] elfutils-default-yama-scope-0 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[132/132] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/133] json-c-0:0.18-2.fc42.aarch64  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[133/133] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/134] libstdc++-0:15.0.1-0.6.fc42.a 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[134/134] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/135] libffi-0:3.4.6-5.fc42.aarch64 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[135/135] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/136] p11-kit-0:0.25.5-5.fc42.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[136/136] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/137] p11-kit-trust-0:0.25.5-5.fc42 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[137/137] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/138] systemd-0:257.2-17.fc42.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[138/138] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/139] systemd-rpm-macros-0:257.2-17 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[139/139] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/140] systemd-pam-0:257.2-17.fc42.a 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
--------------------------------------------------------------------------------
[140/140] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/141] libtasn1-0:4.19.0-11.fc42.aar 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
--------------------------------------------------------------------------------
[141/141] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/142] dbus-1:1.16.0-3.fc42.aarch64  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
--------------------------------------------------------------------------------
[142/142] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/143] libseccomp-0:2.5.5-2.fc41.aar 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[143/143] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/144] dbus-broker-0:36-5.fc42.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[144/144] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/145] expat-0:2.6.4-2.fc42.aarch64  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[145/145] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/146] dbus-common-1:1.16.0-3.fc42.n 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[146/146] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/147] fedora-release-0:42-0.16.noar 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[147/147] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/149] xxhash-libs-0:0.8.3-2.fc42.aa 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  2/150] fedora-release-identity-basic 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  3/151] libcurl-0:8.11.1-3.fc42.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  4/152] libnghttp2-0:1.64.0-3.fc42.aa 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  5/153] libssh-0:0.11.1-4.fc42.aarch6 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  6/154] libssh-config-0:0.11.1-4.fc42 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  7/155] openldap-0:2.6.9-3.fc42.aarch 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  8/156] libbrotli-0:1.1.0-6.fc42.aarc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[  9/157] libidn2-0:2.3.7-3.fc42.aarch6 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 10/158] libpsl-0:0.21.5-5.fc42.aarch6 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 11/159] cyrus-sasl-lib-0:2.1.28-30.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 12/160] libevent-0:2.1.12-15.fc42.aar 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 13/161] libtool-ltdl-0:2.5.4-4.fc42.a 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 14/162] publicsuffix-list-dafsa-0:202 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 15/163] libunistring-0:1.1-9.fc42.aar 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 16/163] gdb-minimal-0:15.2-7.fc42.aar 100% | 108.1 MiB/s |   4.1 MiB |  00m00s
--------------------------------------------------------------------------------
[163/163] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
Running transaction
[  1/165] Verify package files          100% | 699.0   B/s | 163.0   B |  00m00s
[  2/165] Prepare transaction           100% |   2.3 KiB/s | 163.0   B |  00m00s
[  3/165] Installing libgcc-0:15.0.1-0. 100% | 218.6 MiB/s | 223.9 KiB |  00m00s
[  4/165] Installing publicsuffix-list- 100% |  67.6 MiB/s |  69.2 KiB |  00m00s
[  5/165] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[  6/165] Installing fedora-release-ide 100% |   0.0   B/s | 976.0   B |  00m00s
[  7/165] Installing fedora-repos-rawhi 100% |   0.0   B/s |   2.4 KiB |  00m00s
[  8/165] Installing fedora-gpg-keys-0: 100% |  28.4 MiB/s | 174.8 KiB |  00m00s
[  9/165] Installing fedora-repos-0:42- 100% |   0.0   B/s |   5.7 KiB |  00m00s
[ 10/165] Installing fedora-release-com 100% |  23.6 MiB/s |  24.1 KiB |  00m00s
[ 11/165] Installing fedora-release-0:4 100% |   0.0   B/s | 124.0   B |  00m00s
[ 12/165] Installing setup-0:2.15.0-10. 100% |  44.3 MiB/s | 726.5 KiB |  00m00s
>>> [RPM] /etc/hosts created as /etc/hosts.rpmnew
[ 13/165] Installing filesystem-0:3.18- 100% |   1.9 MiB/s | 212.4 KiB |  00m00s
[ 14/165] Installing basesystem-0:11-22 100% |   0.0   B/s | 124.0   B |  00m00s
[ 15/165] Installing pcre2-syntax-0:10. 100% | 248.1 MiB/s | 254.1 KiB |  00m00s
[ 16/165] Installing rust-srpm-macros-0 100% |   0.0   B/s |   5.6 KiB |  00m00s
[ 17/165] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 776.0   B |  00m00s
[ 18/165] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[ 19/165] Installing package-notes-srpm 100% |   0.0   B/s |   2.0 KiB |  00m00s
[ 20/165] Installing openblas-srpm-macr 100% |   0.0   B/s | 392.0   B |  00m00s
[ 21/165] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.2 KiB |  00m00s
[ 22/165] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[ 23/165] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[ 24/165] Installing ghc-srpm-macros-0: 100% |   0.0   B/s |   1.0 KiB |  00m00s
[ 25/165] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[ 26/165] Installing ansible-srpm-macro 100% |   0.0   B/s |  36.2 KiB |  00m00s
[ 27/165] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 732.0   B |  00m00s
[ 28/165] Installing pkgconf-m4-0:2.3.0 100% |  14.5 MiB/s |  14.8 KiB |  00m00s
[ 29/165] Installing ncurses-base-0:6.5 100% |  49.1 MiB/s | 352.2 KiB |  00m00s
[ 30/165] Installing glibc-minimal-lang 100% |   0.0   B/s | 124.0   B |  00m00s
[ 31/165] Installing ncurses-libs-0:6.5 100% | 207.9 MiB/s |   1.2 MiB |  00m00s
[ 32/165] Installing glibc-0:2.40.9000- 100% | 156.5 MiB/s |   6.3 MiB |  00m00s
[ 33/165] Installing bash-0:5.2.37-1.fc 100% | 205.8 MiB/s |   8.2 MiB |  00m00s
[ 34/165] Installing glibc-common-0:2.4 100% |  60.2 MiB/s |   1.3 MiB |  00m00s
[ 35/165] Installing glibc-gconv-extra- 100% | 365.9 MiB/s |  18.7 MiB |  00m00s
[ 36/165] Installing zlib-ng-compat-0:2 100% | 131.1 MiB/s | 134.2 KiB |  00m00s
[ 37/165] Installing xz-libs-1:5.6.3-3. 100% | 198.6 MiB/s | 203.4 KiB |  00m00s
[ 38/165] Installing bzip2-libs-0:1.0.8 100% |  72.0 MiB/s |  73.7 KiB |  00m00s
[ 39/165] Installing libuuid-0:2.40.4-2 100% |  68.7 MiB/s |  70.4 KiB |  00m00s
[ 40/165] Installing libblkid-0:2.40.4- 100% | 142.4 MiB/s | 291.6 KiB |  00m00s
[ 41/165] Installing libxcrypt-0:4.4.38 100% | 134.1 MiB/s | 274.7 KiB |  00m00s
[ 42/165] Installing readline-0:8.2-12. 100% | 275.0 MiB/s | 563.2 KiB |  00m00s
[ 43/165] Installing popt-0:1.19-8.fc42 100% |  49.3 MiB/s | 151.4 KiB |  00m00s
[ 44/165] Installing libzstd-0:1.5.6-3. 100% | 217.8 MiB/s | 668.9 KiB |  00m00s
[ 45/165] Installing elfutils-libelf-0: 100% | 297.4 MiB/s |   1.2 MiB |  00m00s
[ 46/165] Installing gmp-1:6.3.0-2.fc41 100% | 235.8 MiB/s | 724.2 KiB |  00m00s
[ 47/165] Installing libstdc++-0:15.0.1 100% | 307.2 MiB/s |   2.8 MiB |  00m00s
[ 48/165] Installing libeconf-0:0.7.5-2 100% |  80.3 MiB/s |  82.2 KiB |  00m00s
[ 49/165] Installing libcap-ng-0:0.8.5- 100% | 159.0 MiB/s | 162.8 KiB |  00m00s
[ 50/165] Installing audit-libs-0:4.0.3 100% | 203.7 MiB/s | 417.2 KiB |  00m00s
[ 51/165] Installing pam-libs-0:1.7.0-4 100% | 220.0 MiB/s | 225.3 KiB |  00m00s
[ 52/165] Installing libcap-0:2.73-2.fc 100% |  27.8 MiB/s | 511.6 KiB |  00m00s
[ 53/165] Installing systemd-libs-0:257 100% | 291.9 MiB/s |   2.3 MiB |  00m00s
[ 54/165] Installing libattr-0:2.5.2-5. 100% |  66.5 MiB/s |  68.0 KiB |  00m00s
[ 55/165] Installing libacl-0:2.3.2-3.f 100% |  65.5 MiB/s |  67.1 KiB |  00m00s
[ 56/165] Installing gdbm-libs-1:1.23-9 100% | 230.1 MiB/s | 235.7 KiB |  00m00s
[ 57/165] Installing mpfr-0:4.2.1-6.fc4 100% | 246.2 MiB/s | 756.3 KiB |  00m00s
[ 58/165] Installing gawk-0:5.3.1-1.fc4 100% | 102.2 MiB/s |   2.5 MiB |  00m00s
[ 59/165] Installing dwz-0:0.15-9.fc42. 100% |  19.8 MiB/s | 323.9 KiB |  00m00s
[ 60/165] Installing libfdisk-0:2.40.4- 100% | 205.1 MiB/s | 420.0 KiB |  00m00s
[ 61/165] Installing unzip-0:6.0-66.fc4 100% |  27.2 MiB/s | 473.7 KiB |  00m00s
[ 62/165] Installing file-libs-0:5.45-9 100% | 586.0 MiB/s |  10.0 MiB |  00m00s
[ 63/165] Installing file-0:5.45-9.fc42 100% |   5.5 MiB/s | 140.8 KiB |  00m00s
[ 64/165] Installing crypto-policies-0: 100% |  20.0 MiB/s | 163.7 KiB |  00m00s
[ 65/165] Installing libsmartcols-0:2.4 100% | 220.2 MiB/s | 225.5 KiB |  00m00s
[ 66/165] Installing libsepol-0:3.8-1.f 100% | 264.0 MiB/s | 810.9 KiB |  00m00s
[ 67/165] Installing lua-libs-0:5.4.7-2 100% | 161.2 MiB/s | 330.1 KiB |  00m00s
[ 68/165] Installing alternatives-0:1.3 100% |   5.3 MiB/s |  91.7 KiB |  00m00s
[ 69/165] Installing libcom_err-0:1.47. 100% | 109.5 MiB/s | 112.2 KiB |  00m00s
[ 70/165] Installing pcre2-0:10.44-1.fc 100% | 317.7 MiB/s | 650.6 KiB |  00m00s
[ 71/165] Installing libselinux-0:3.8-1 100% | 197.6 MiB/s | 202.3 KiB |  00m00s
[ 72/165] Installing grep-0:3.11-10.fc4 100% |  49.2 MiB/s |   1.0 MiB |  00m00s
[ 73/165] Installing sed-0:4.9-4.fc42.a 100% |  41.0 MiB/s | 881.4 KiB |  00m00s
[ 74/165] Installing findutils-1:4.10.0 100% |  83.5 MiB/s |   1.9 MiB |  00m00s
[ 75/165] Installing libmount-0:2.40.4- 100% | 174.3 MiB/s | 356.9 KiB |  00m00s
[ 76/165] Installing util-linux-core-0: 100% |  92.9 MiB/s |   2.3 MiB |  00m00s
[ 77/165] Installing xz-1:5.6.3-3.fc42. 100% |  57.5 MiB/s |   1.3 MiB |  00m00s
[ 78/165] Installing lz4-libs-0:1.10.0- 100% | 193.9 MiB/s | 198.5 KiB |  00m00s
[ 79/165] Installing libffi-0:3.4.6-5.f 100% | 152.1 MiB/s | 155.8 KiB |  00m00s
[ 80/165] Installing libtasn1-0:4.19.0- 100% | 108.1 MiB/s | 221.5 KiB |  00m00s
[ 81/165] Installing p11-kit-0:0.25.5-5 100% |  92.1 MiB/s |   2.4 MiB |  00m00s
[ 82/165] Installing libunistring-0:1.1 100% | 291.0 MiB/s |   1.7 MiB |  00m00s
[ 83/165] Installing libidn2-0:2.3.7-3. 100% |  81.8 MiB/s | 335.0 KiB |  00m00s
[ 84/165] Installing libpsl-0:0.21.5-5. 100% | 130.5 MiB/s | 133.6 KiB |  00m00s
[ 85/165] Installing p11-kit-trust-0:0. 100% |  16.2 MiB/s | 465.0 KiB |  00m00s
[ 86/165] Installing zstd-0:1.5.6-3.fc4 100% |  71.6 MiB/s |   1.5 MiB |  00m00s
[ 87/165] Installing tar-2:1.35-5.fc42. 100% | 111.3 MiB/s |   3.0 MiB |  00m00s
[ 88/165] Installing libsemanage-0:3.8- 100% | 117.8 MiB/s | 361.8 KiB |  00m00s
[ 89/165] Installing shadow-utils-2:4.1 100% | 110.9 MiB/s |   4.5 MiB |  00m00s
[ 90/165] Installing zip-0:3.0-43.fc42. 100% |  39.4 MiB/s | 766.4 KiB |  00m00s
[ 91/165] Installing gdbm-1:1.23-9.fc42 100% |  29.8 MiB/s | 548.8 KiB |  00m00s
[ 92/165] Installing cyrus-sasl-lib-0:2 100% | 100.7 MiB/s |   2.4 MiB |  00m00s
[ 93/165] Installing bzip2-0:1.0.8-20.f 100% |  10.1 MiB/s | 175.8 KiB |  00m00s
[ 94/165] Installing libxml2-0:2.12.9-2 100% |  86.0 MiB/s |   1.9 MiB |  00m00s
[ 95/165] Installing sqlite-libs-0:3.47 100% | 246.3 MiB/s |   1.5 MiB |  00m00s
[ 96/165] Installing add-determinism-0: 100% |  94.0 MiB/s |   2.2 MiB |  00m00s
[ 97/165] Installing build-reproducibil 100% |   0.0   B/s |   1.0 KiB |  00m00s
[ 98/165] Installing filesystem-srpm-ma 100% |  38.0 MiB/s |  38.9 KiB |  00m00s
[ 99/165] Installing ed-0:1.21-2.fc42.a 100% |   9.0 MiB/s | 156.8 KiB |  00m00s
[100/165] Installing patch-0:2.7.6-26.f 100% |  15.2 MiB/s | 263.9 KiB |  00m00s
[101/165] Installing elfutils-default-y 100% | 227.0 KiB/s |   2.0 KiB |  00m00s
[102/165] Installing elfutils-libs-0:0. 100% | 182.7 MiB/s | 748.2 KiB |  00m00s
[103/165] Installing dbus-common-1:1.16 100% |   1.3 MiB/s |  13.6 KiB |  00m00s
[104/165] Installing cpio-0:2.15-2.fc41 100% |  53.1 MiB/s |   1.2 MiB |  00m00s
[105/165] Installing diffutils-0:3.10-9 100% |  69.9 MiB/s |   1.6 MiB |  00m00s
[106/165] Installing libgomp-0:15.0.1-0 100% | 250.3 MiB/s | 512.6 KiB |  00m00s
[107/165] Installing jansson-0:2.14-2.f 100% |  92.3 MiB/s |  94.5 KiB |  00m00s
[108/165] Installing libpkgconf-0:2.3.0 100% | 132.0 MiB/s | 135.1 KiB |  00m00s
[109/165] Installing pkgconf-0:2.3.0-2. 100% |   7.0 MiB/s | 114.9 KiB |  00m00s
[110/165] Installing pkgconf-pkg-config 100% | 110.8 KiB/s |   1.8 KiB |  00m00s
[111/165] Installing keyutils-libs-0:1. 100% |  97.4 MiB/s |  99.8 KiB |  00m00s
[112/165] Installing libverto-0:0.3.2-1 100% |  69.5 MiB/s |  71.2 KiB |  00m00s
[113/165] Installing json-c-0:0.18-2.fc 100% | 136.7 MiB/s | 139.9 KiB |  00m00s
[114/165] Installing libseccomp-0:2.5.5 100% | 237.6 MiB/s | 243.3 KiB |  00m00s
[115/165] Installing expat-0:2.6.4-2.fc 100% |  10.4 MiB/s | 350.8 KiB |  00m00s
[116/165] Installing dbus-broker-0:36-5 100% |  14.3 MiB/s | 424.4 KiB |  00m00s
[117/165] Installing dbus-1:1.16.0-3.fc 100% |   0.0   B/s | 124.0   B |  00m00s
[118/165] Installing xxhash-libs-0:0.8. 100% |  85.3 MiB/s |  87.4 KiB |  00m00s
[119/165] Installing libnghttp2-0:1.64. 100% | 194.5 MiB/s | 199.2 KiB |  00m00s
[120/165] Installing libbrotli-0:1.1.0- 100% | 222.6 MiB/s | 911.7 KiB |  00m00s
[121/165] Installing libtool-ltdl-0:2.5 100% |  92.9 MiB/s |  95.1 KiB |  00m00s
[122/165] Installing coreutils-common-0 100% | 293.5 MiB/s |  11.2 MiB |  00m00s
[123/165] Installing openssl-libs-1:3.2 100% | 301.6 MiB/s |   6.3 MiB |  00m00s
[124/165] Installing coreutils-0:9.6-1. 100% | 161.3 MiB/s |   8.2 MiB |  00m00s
[125/165] Installing ca-certificates-0: 100% |   1.4 MiB/s |   2.4 MiB |  00m02s
[126/165] Installing krb5-libs-0:1.21.3 100% | 230.2 MiB/s |   2.5 MiB |  00m00s
[127/165] Installing libarchive-0:3.7.7 100% | 222.8 MiB/s | 912.6 KiB |  00m00s
[128/165] Installing libtirpc-0:1.3.6-1 100% | 103.7 MiB/s | 212.5 KiB |  00m00s
[129/165] Installing gzip-0:1.13-3.fc42 100% |  22.1 MiB/s | 430.2 KiB |  00m00s
[130/165] Installing authselect-libs-0: 100% | 122.8 MiB/s | 880.5 KiB |  00m00s
[131/165] Installing cracklib-0:2.9.11- 100% |  20.2 MiB/s | 433.7 KiB |  00m00s
[132/165] Installing libpwquality-0:1.4 100% |  27.6 MiB/s | 621.7 KiB |  00m00s
[133/165] Installing libnsl2-0:2.0.1-3. 100% |  46.4 MiB/s |  95.0 KiB |  00m00s
[134/165] Installing pam-0:1.7.0-4.fc42 100% | 116.1 MiB/s |   4.3 MiB |  00m00s
[135/165] Installing util-linux-0:2.40. 100% | 125.1 MiB/s |   6.6 MiB |  00m00s
[136/165] Installing systemd-pam-0:257. 100% | 167.3 MiB/s |   1.2 MiB |  00m00s
[137/165] Installing systemd-0:257.2-17 100% |  93.7 MiB/s |  20.2 MiB |  00m00s
>>> Running post-install scriptlet: systemd-0:257.2-17.fc42.aarch64
>>> Finished post-install scriptlet: systemd-0:257.2-17.fc42.aarch64
>>> Scriptlet output:
>>> Creating group 'systemd-journal' with GID 190.
>>> Creating group 'systemd-oom' with GID 999.
>>> Creating user 'systemd-oom' (systemd Userspace OOM Killer) with UID 999 and 
>>> 
[138/165] Installing libssh-0:0.11.1-4. 100% | 191.2 MiB/s | 587.5 KiB |  00m00s
[139/165] Installing rpm-sequoia-0:1.7. 100% | 287.2 MiB/s |   2.3 MiB |  00m00s
[140/165] Installing rpm-libs-0:4.20.0- 100% | 239.3 MiB/s | 735.1 KiB |  00m00s
[141/165] Installing rpm-build-libs-0:4 100% | 194.8 MiB/s | 199.4 KiB |  00m00s
[142/165] Installing libevent-0:2.1.12- 100% | 271.3 MiB/s |   1.1 MiB |  00m00s
[143/165] Installing openldap-0:2.6.9-3 100% | 171.2 MiB/s | 701.1 KiB |  00m00s
[144/165] Installing libcurl-0:8.11.1-3 100% | 258.8 MiB/s | 795.1 KiB |  00m00s
[145/165] Installing elfutils-debuginfo 100% |   7.9 MiB/s | 146.2 KiB |  00m00s
[146/165] Installing elfutils-0:0.192-8 100% | 120.8 MiB/s |   3.1 MiB |  00m00s
[147/165] Installing binutils-0:2.43.50 100% | 263.0 MiB/s |  29.2 MiB |  00m00s
[148/165] Installing gdb-minimal-0:15.2 100% | 216.8 MiB/s |  12.8 MiB |  00m00s
[149/165] Installing debugedit-0:5.1-4. 100% |  13.4 MiB/s | 247.0 KiB |  00m00s
[150/165] Installing curl-0:8.11.1-3.fc 100% |  15.4 MiB/s | 457.2 KiB |  00m00s
[151/165] Installing rpm-0:4.20.0-8.fc4 100% |  73.8 MiB/s |   2.7 MiB |  00m00s
[152/165] Installing efi-srpm-macros-0: 100% |  40.1 MiB/s |  41.1 KiB |  00m00s
[153/165] Installing lua-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[154/165] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.7 KiB |  00m00s
[155/165] Installing forge-srpm-macros- 100% |  39.3 MiB/s |  40.3 KiB |  00m00s
[156/165] Installing go-srpm-macros-0:3 100% |  60.5 MiB/s |  62.0 KiB |  00m00s
[157/165] Installing fonts-srpm-macros- 100% |  55.7 MiB/s |  57.0 KiB |  00m00s
[158/165] Installing python-srpm-macros 100% |  50.9 MiB/s |  52.2 KiB |  00m00s
[159/165] Installing redhat-rpm-config- 100% |  63.0 MiB/s | 193.5 KiB |  00m00s
[160/165] Installing rpm-build-0:4.20.0 100% |  26.1 MiB/s | 533.6 KiB |  00m00s
[161/165] Installing pyproject-srpm-mac 100% |   2.4 MiB/s |   2.5 KiB |  00m00s
[162/165] Installing authselect-0:1.5.0 100% |  10.0 MiB/s | 184.3 KiB |  00m00s
[163/165] Installing which-0:2.22-2.fc4 100% |   7.6 MiB/s | 125.3 KiB |  00m00s
[164/165] Installing info-0:7.2-3.fc42. 100% |  22.9 MiB/s | 422.0 KiB |  00m00s
[165/165] Installing systemd-rpm-macros 100% |   5.1 KiB/s |  11.3 KiB |  00m02s
Warning: skipped OpenPGP checks for 163 packages from repository: http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: add-determinism-0.5.0-2.fc42.aarch64
alternatives-1.31-3.fc42.aarch64
ansible-srpm-macros-1-17.1.fc42.noarch
audit-libs-4.0.3-2.fc42.aarch64
authselect-1.5.0-9.fc42.aarch64
authselect-libs-1.5.0-9.fc42.aarch64
basesystem-11-22.fc42.noarch
bash-5.2.37-1.fc42.aarch64
binutils-2.43.50-12.fc42.aarch64
build-reproducibility-srpm-macros-0.5.0-2.fc42.noarch
bzip2-1.0.8-20.fc42.aarch64
bzip2-libs-1.0.8-20.fc42.aarch64
ca-certificates-2024.2.69_v8.0.401-5.fc42.noarch
coreutils-9.6-1.fc42.aarch64
coreutils-common-9.6-1.fc42.aarch64
cpio-2.15-2.fc41.aarch64
cracklib-2.9.11-7.fc42.aarch64
crypto-policies-20250124-1.git4d262e7.fc42.noarch
curl-8.11.1-3.fc42.aarch64
cyrus-sasl-lib-2.1.28-30.fc42.aarch64
dbus-1.16.0-3.fc42.aarch64
dbus-broker-36-5.fc42.aarch64
dbus-common-1.16.0-3.fc42.noarch
debugedit-5.1-4.fc42.aarch64
diffutils-3.10-9.fc42.aarch64
dwz-0.15-9.fc42.aarch64
ed-1.21-2.fc42.aarch64
efi-srpm-macros-6-2.fc42.noarch
elfutils-0.192-8.fc42.aarch64
elfutils-debuginfod-client-0.192-8.fc42.aarch64
elfutils-default-yama-scope-0.192-8.fc42.noarch
elfutils-libelf-0.192-8.fc42.aarch64
elfutils-libs-0.192-8.fc42.aarch64
expat-2.6.4-2.fc42.aarch64
fedora-gpg-keys-42-0.4.noarch
fedora-release-42-0.16.noarch
fedora-release-common-42-0.16.noarch
fedora-release-identity-basic-42-0.16.noarch
fedora-repos-42-0.4.noarch
fedora-repos-rawhide-42-0.4.noarch
file-5.45-9.fc42.aarch64
file-libs-5.45-9.fc42.aarch64
filesystem-3.18-36.fc42.aarch64
filesystem-srpm-macros-3.18-36.fc42.noarch
findutils-4.10.0-5.fc42.aarch64
fonts-srpm-macros-2.0.5-21.fc42.noarch
forge-srpm-macros-0.4.0-2.fc42.noarch
fpc-srpm-macros-1.3-14.fc42.noarch
gawk-5.3.1-1.fc42.aarch64
gdb-minimal-15.2-7.fc42.aarch64
gdbm-1.23-9.fc42.aarch64
gdbm-libs-1.23-9.fc42.aarch64
ghc-srpm-macros-1.9.2-2.fc42.noarch
glibc-2.40.9000-35.fc42.aarch64
glibc-common-2.40.9000-35.fc42.aarch64
glibc-gconv-extra-2.40.9000-35.fc42.aarch64
glibc-minimal-langpack-2.40.9000-35.fc42.aarch64
gmp-6.3.0-2.fc41.aarch64
gnat-srpm-macros-6-7.fc42.noarch
go-srpm-macros-3.6.0-6.fc42.noarch
grep-3.11-10.fc42.aarch64
gzip-1.13-3.fc42.aarch64
info-7.2-3.fc42.aarch64
jansson-2.14-2.fc42.aarch64
json-c-0.18-2.fc42.aarch64
kernel-srpm-macros-1.0-25.fc42.noarch
keyutils-libs-1.6.3-5.fc42.aarch64
krb5-libs-1.21.3-5.fc42.aarch64
libacl-2.3.2-3.fc42.aarch64
libarchive-3.7.7-2.fc42.aarch64
libattr-2.5.2-5.fc42.aarch64
libblkid-2.40.4-2.fc42.aarch64
libbrotli-1.1.0-6.fc42.aarch64
libcap-2.73-2.fc42.aarch64
libcap-ng-0.8.5-4.fc42.aarch64
libcom_err-1.47.2-3.fc42.aarch64
libcurl-8.11.1-3.fc42.aarch64
libeconf-0.7.5-2.fc42.aarch64
libevent-2.1.12-15.fc42.aarch64
libfdisk-2.40.4-2.fc42.aarch64
libffi-3.4.6-5.fc42.aarch64
libgcc-15.0.1-0.6.fc42.aarch64
libgomp-15.0.1-0.6.fc42.aarch64
libidn2-2.3.7-3.fc42.aarch64
libmount-2.40.4-2.fc42.aarch64
libnghttp2-1.64.0-3.fc42.aarch64
libnsl2-2.0.1-3.fc42.aarch64
libpkgconf-2.3.0-2.fc42.aarch64
libpsl-0.21.5-5.fc42.aarch64
libpwquality-1.4.5-12.fc42.aarch64
libseccomp-2.5.5-2.fc41.aarch64
libselinux-3.8-1.fc42.aarch64
libsemanage-3.8-1.fc42.aarch64
libsepol-3.8-1.fc42.aarch64
libsmartcols-2.40.4-2.fc42.aarch64
libssh-0.11.1-4.fc42.aarch64
libssh-config-0.11.1-4.fc42.noarch
libstdc++-15.0.1-0.6.fc42.aarch64
libtasn1-4.19.0-11.fc42.aarch64
libtirpc-1.3.6-1.rc3.fc42.2.aarch64
libtool-ltdl-2.5.4-4.fc42.aarch64
libunistring-1.1-9.fc42.aarch64
libuuid-2.40.4-2.fc42.aarch64
libverto-0.3.2-10.fc42.aarch64
libxcrypt-4.4.38-4.fc42.aarch64
libxml2-2.12.9-2.fc42.aarch64
libzstd-1.5.6-3.fc42.aarch64
lua-libs-5.4.7-2.fc42.aarch64
lua-srpm-macros-1-15.fc42.noarch
lz4-libs-1.10.0-2.fc42.aarch64
mpfr-4.2.1-6.fc42.aarch64
ncurses-base-6.5-5.20250125.fc42.noarch
ncurses-libs-6.5-5.20250125.fc42.aarch64
ocaml-srpm-macros-10-4.fc42.noarch
openblas-srpm-macros-2-19.fc42.noarch
openldap-2.6.9-3.fc42.aarch64
openssl-libs-3.2.2-14.fc42.aarch64
p11-kit-0.25.5-5.fc42.aarch64
p11-kit-trust-0.25.5-5.fc42.aarch64
package-notes-srpm-macros-0.5-13.fc42.noarch
pam-1.7.0-4.fc42.aarch64
pam-libs-1.7.0-4.fc42.aarch64
patch-2.7.6-26.fc42.aarch64
pcre2-10.44-1.fc42.2.aarch64
pcre2-syntax-10.44-1.fc42.2.noarch
perl-srpm-macros-1-57.fc42.noarch
pkgconf-2.3.0-2.fc42.aarch64
pkgconf-m4-2.3.0-2.fc42.noarch
pkgconf-pkg-config-2.3.0-2.fc42.aarch64
popt-1.19-8.fc42.aarch64
publicsuffix-list-dafsa-20250116-1.fc42.noarch
pyproject-srpm-macros-1.16.4-2.fc42.noarch
python-srpm-macros-3.13-4.fc42.noarch
qt5-srpm-macros-5.15.15-1.fc42.noarch
qt6-srpm-macros-6.8.1-5.fc42.noarch
readline-8.2-12.fc42.aarch64
redhat-rpm-config-342-1.fc42.noarch
rpm-4.20.0-8.fc42.aarch64
rpm-build-4.20.0-8.fc42.aarch64
rpm-build-libs-4.20.0-8.fc42.aarch64
rpm-libs-4.20.0-8.fc42.aarch64
rpm-sequoia-1.7.0-4.fc42.aarch64
rust-srpm-macros-26.3-4.fc42.noarch
sed-4.9-4.fc42.aarch64
setup-2.15.0-10.fc42.noarch
shadow-utils-4.17.0-4.fc42.aarch64
sqlite-libs-3.47.2-2.fc42.aarch64
systemd-257.2-17.fc42.aarch64
systemd-libs-257.2-17.fc42.aarch64
systemd-pam-257.2-17.fc42.aarch64
systemd-rpm-macros-257.2-17.fc42.noarch
tar-1.35-5.fc42.aarch64
unzip-6.0-66.fc42.aarch64
util-linux-2.40.4-2.fc42.aarch64
util-linux-core-2.40.4-2.fc42.aarch64
which-2.22-2.fc42.aarch64
xxhash-libs-0.8.3-2.fc42.aarch64
xz-5.6.3-3.fc42.aarch64
xz-libs-5.6.3-3.fc42.aarch64
zig-srpm-macros-1-4.fc42.noarch
zip-3.0-43.fc42.aarch64
zlib-ng-compat-2.2.3-2.fc42.aarch64
zstd-1.5.6-3.fc42.aarch64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1738454400
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-23.fc42.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-41-aarch64-1738532761.194760/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-nfkrh2m5/mmseq/mmseq.spec) Config(child) 0 minutes 18 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-23.fc42.src.rpm)  Config(fedora-41-aarch64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-41-aarch64-bootstrap-1738532761.194760/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-41-aarch64-bootstrap-1738532761.194760/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-41-aarch64-1738532761.194760/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.20.0-1.fc41.aarch64
  rpm-sequoia-1.7.0-3.fc41.aarch64
  dnf5-5.2.8.1-3.fc41.aarch64
  dnf5-plugins-5.2.8.1-3.fc41.aarch64
Finish: chroot init
Start: build phase for mmseq-1.0.11-23.fc42.src.rpm
Start: build setup for mmseq-1.0.11-23.fc42.src.rpm
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1738454400
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-23.fc42.src.rpm
Updating and loading repositories:
 updates                                100% | 527.3 KiB/s |  15.8 KiB |  00m00s
 fedora                                 100% | 646.0 KiB/s |  16.8 KiB |  00m00s
 Copr repository                        100% | 102.5 KiB/s |   1.5 KiB |  00m00s
 Additional repo http_kojipkgs_fedorapr 100% | 225.3 KiB/s |   3.8 KiB |  00m00s
Repositories loaded.
Package                      Arch    Version              Repository                                                         Size
Installing:
 armadillo-devel             aarch64 12.8.1-6.fc42        copr_base                                                       7.3 MiB
 boost-devel                 aarch64 1.83.0-12.fc42       copr_base                                                     143.0 MiB
 flexiblas-devel             aarch64 3.4.4-7.fc42         copr_base                                                       4.9 MiB
 gcc-c++                     aarch64 15.0.1-0.6.fc42      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  38.6 MiB
 gsl-devel                   aarch64 2.7.1-13.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 htslib-devel                aarch64 1.15.1-8.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 411.0 KiB
 make                        aarch64 1:4.4.1-10.fc42      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.8 MiB
 perl-generators             noarch  1.16-7.fc42          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  21.8 KiB
 zlib-ng-compat-devel        aarch64 2.2.3-2.fc42         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 107.0 KiB
Installing dependencies:
 SuperLU                     aarch64 7.0.0-2.fc42         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 453.3 KiB
 SuperLU-devel               aarch64 7.0.0-2.fc42         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103.5 KiB
 annobin-docs                noarch  12.87-1.fc42         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  98.6 KiB
 annobin-plugin-gcc          aarch64 12.87-1.fc42         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.0 MiB
 armadillo                   aarch64 12.8.1-6.fc42        copr_base                                                     146.1 KiB
 arpack                      aarch64 3.9.1-6.fc42         copr_base                                                     553.9 KiB
 arpack-devel                aarch64 3.9.1-6.fc42         copr_base                                                      69.1 KiB
 boost                       aarch64 1.83.0-12.fc42       copr_base                                                       1.3 KiB
 boost-atomic                aarch64 1.83.0-12.fc42       copr_base                                                      68.8 KiB
 boost-chrono                aarch64 1.83.0-12.fc42       copr_base                                                      69.4 KiB
 boost-container             aarch64 1.83.0-12.fc42       copr_base                                                      69.4 KiB
 boost-context               aarch64 1.83.0-12.fc42       copr_base                                                      68.3 KiB
 boost-contract              aarch64 1.83.0-12.fc42       copr_base                                                     134.6 KiB
 boost-coroutine             aarch64 1.83.0-12.fc42       copr_base                                                      69.1 KiB
 boost-date-time             aarch64 1.83.0-12.fc42       copr_base                                                      68.2 KiB
 boost-fiber                 aarch64 1.83.0-12.fc42       copr_base                                                     134.4 KiB
 boost-filesystem            aarch64 1.83.0-12.fc42       copr_base                                                     134.8 KiB
 boost-graph                 aarch64 1.83.0-12.fc42       copr_base                                                     333.7 KiB
 boost-iostreams             aarch64 1.83.0-12.fc42       copr_base                                                     134.2 KiB
 boost-json                  aarch64 1.83.0-12.fc42       copr_base                                                     328.3 KiB
 boost-locale                aarch64 1.83.0-12.fc42       copr_base                                                     594.8 KiB
 boost-log                   aarch64 1.83.0-12.fc42       copr_base                                                       1.4 MiB
 boost-math                  aarch64 1.83.0-12.fc42       copr_base                                                     863.4 KiB
 boost-nowide                aarch64 1.83.0-12.fc42       copr_base                                                      68.9 KiB
 boost-numpy3                aarch64 1.83.0-12.fc42       copr_base                                                      69.4 KiB
 boost-program-options       aarch64 1.83.0-12.fc42       copr_base                                                     267.4 KiB
 boost-python3               aarch64 1.83.0-12.fc42       copr_base                                                     268.6 KiB
 boost-random                aarch64 1.83.0-12.fc42       copr_base                                                      69.5 KiB
 boost-regex                 aarch64 1.83.0-12.fc42       copr_base                                                     266.4 KiB
 boost-serialization         aarch64 1.83.0-12.fc42       copr_base                                                     467.3 KiB
 boost-stacktrace            aarch64 1.83.0-12.fc42       copr_base                                                     203.7 KiB
 boost-system                aarch64 1.83.0-12.fc42       copr_base                                                      68.2 KiB
 boost-test                  aarch64 1.83.0-12.fc42       copr_base                                                     664.1 KiB
 boost-thread                aarch64 1.83.0-12.fc42       copr_base                                                     136.3 KiB
 boost-timer                 aarch64 1.83.0-12.fc42       copr_base                                                      69.0 KiB
 boost-type_erasure          aarch64 1.83.0-12.fc42       copr_base                                                      70.0 KiB
 boost-wave                  aarch64 1.83.0-12.fc42       copr_base                                                     854.2 KiB
 cmake-filesystem            aarch64 3.31.5-1.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   0.0   B
 cpp                         aarch64 15.0.1-0.6.fc42      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.4 MiB
 flexiblas                   aarch64 3.4.4-7.fc42         copr_base                                                      48.5 KiB
 flexiblas-netlib            aarch64 3.4.4-7.fc42         copr_base                                                       9.1 MiB
 flexiblas-netlib64          aarch64 3.4.4-7.fc42         copr_base                                                       9.1 MiB
 flexiblas-openblas-openmp   aarch64 3.4.4-7.fc42         copr_base                                                      67.3 KiB
 flexiblas-openblas-openmp64 aarch64 3.4.4-7.fc42         copr_base                                                      67.3 KiB
 gcc                         aarch64 15.0.1-0.6.fc42      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  98.5 MiB
 gcc-gfortran                aarch64 15.0.1-0.6.fc42      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  36.6 MiB
 gcc-plugin-annobin          aarch64 15.0.1-0.6.fc42      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  69.2 KiB
 glibc-devel                 aarch64 2.40.9000-35.fc42    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 MiB
 groff-base                  aarch64 1.23.0-8.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.2 MiB
 gsl                         aarch64 2.7.1-13.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.3 MiB
 hdf5                        aarch64 1.14.5-2.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.0 MiB
 hdf5-devel                  aarch64 1.14.5-2.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.2 MiB
 htslib                      aarch64 1.15.1-8.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 kernel-headers              aarch64 6.13.0-62.fc42       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.4 MiB
 libaec                      aarch64 1.1.3-2.fc42         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 154.0 KiB
 libaec-devel                aarch64 1.1.3-2.fc42         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  12.5 KiB
 libasan                     aarch64 15.0.1-0.6.fc42      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.5 MiB
 libatomic                   aarch64 15.0.1-0.6.fc42      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  68.8 KiB
 libb2                       aarch64 0.98.1-13.fc42       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  74.1 KiB
 libgfortran                 aarch64 15.0.1-0.6.fc42      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB
 libicu                      aarch64 76.1-4.fc42          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  36.5 MiB
 libicu-devel                aarch64 76.1-4.fc42          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.1 MiB
 libmpc                      aarch64 1.3.1-7.fc42         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 152.7 KiB
 libstdc++-devel             aarch64 15.0.1-0.6.fc42      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  15.5 MiB
 libubsan                    aarch64 15.0.1-0.6.fc42      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 475.5 KiB
 libxcrypt-devel             aarch64 4.4.38-4.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  30.8 KiB
 metis                       aarch64 5.1.0.3-7.fc42       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 mpdecimal                   aarch64 2.5.1-17.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 264.7 KiB
 ncurses                     aarch64 6.5-5.20250125.fc42  http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 891.9 KiB
 openblas                    aarch64 0.3.29-1.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 111.7 KiB
 openblas-openmp             aarch64 0.3.29-1.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  20.4 MiB
 openblas-openmp64           aarch64 0.3.29-1.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  20.2 MiB
 perl-AutoLoader             noarch  5.74-515.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  20.5 KiB
 perl-B                      aarch64 1.89-515.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 542.0 KiB
 perl-Carp                   noarch  1.54-512.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  46.6 KiB
 perl-Class-Struct           noarch  0.68-515.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  25.4 KiB
 perl-Data-Dumper            aarch64 2.189-513.fc42       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 135.6 KiB
 perl-Digest                 noarch  1.20-512.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  35.3 KiB
 perl-Digest-MD5             aarch64 2.59-6.fc42          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103.7 KiB
 perl-DynaLoader             aarch64 1.56-515.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  32.1 KiB
 perl-Encode                 aarch64 4:3.21-512.fc42      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.8 MiB
 perl-Errno                  aarch64 1.38-515.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   8.3 KiB
 perl-Exporter               noarch  5.78-512.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  54.3 KiB
 perl-Fcntl                  aarch64 1.18-515.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  92.9 KiB
 perl-Fedora-VSP             noarch  0.001-36.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  39.7 KiB
 perl-File-Basename          noarch  2.86-515.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  14.0 KiB
 perl-File-Path              noarch  2.18-512.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  63.5 KiB
 perl-File-Temp              noarch  1:0.231.100-512.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 162.3 KiB
 perl-File-stat              noarch  1.14-515.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  12.5 KiB
 perl-FileHandle             noarch  2.05-515.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.3 KiB
 perl-Getopt-Long            noarch  1:2.58-3.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.5 KiB
 perl-Getopt-Std             noarch  1.14-515.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  11.2 KiB
 perl-HTTP-Tiny              noarch  0.090-2.fc42         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 154.4 KiB
 perl-IO                     aarch64 1.55-515.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 191.0 KiB
 perl-IO-Socket-IP           noarch  0.43-2.fc42          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 100.3 KiB
 perl-IO-Socket-SSL          noarch  2.089-2.fc42         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 703.3 KiB
 perl-IPC-Open3              noarch  1.22-515.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  22.5 KiB
 perl-MIME-Base32            noarch  1.303-23.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  30.7 KiB
 perl-MIME-Base64            aarch64 3.16-512.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  94.1 KiB
 perl-Net-SSLeay             aarch64 1.94-8.fc42          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.4 MiB
 perl-POSIX                  aarch64 2.20-515.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 263.1 KiB
 perl-PathTools              aarch64 3.91-513.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 224.0 KiB
 perl-Pod-Escapes            noarch  1:1.07-512.fc42      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  24.9 KiB
 perl-Pod-Perldoc            noarch  3.28.01-513.fc42     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 163.7 KiB
 perl-Pod-Simple             noarch  1:3.45-512.fc42      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 560.8 KiB
 perl-Pod-Usage              noarch  4:2.03-512.fc42      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  84.8 KiB
 perl-Scalar-List-Utils      aarch64 5:1.68-2.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 152.8 KiB
 perl-SelectSaver            noarch  1.02-515.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   2.2 KiB
 perl-Socket                 aarch64 4:2.038-512.fc42     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.0 KiB
 perl-Storable               aarch64 1:3.32-512.fc42      http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 244.3 KiB
 perl-Symbol                 noarch  1.09-515.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.8 KiB
 perl-Term-ANSIColor         noarch  5.01-513.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  97.5 KiB
 perl-Term-Cap               noarch  1.18-512.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  29.3 KiB
 perl-Text-ParseWords        noarch  3.31-512.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  13.6 KiB
 perl-Text-Tabs+Wrap         noarch  2024.001-512.fc42    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  22.6 KiB
 perl-Time-Local             noarch  2:1.350-512.fc42     http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  68.9 KiB
 perl-URI                    noarch  5.31-2.fc42          http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 257.0 KiB
 perl-base                   noarch  2.27-515.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  12.5 KiB
 perl-constant               noarch  1.33-513.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  26.2 KiB
 perl-if                     noarch  0.61.000-515.fc42    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.8 KiB
 perl-interpreter            aarch64 4:5.40.1-515.fc42    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 174.1 KiB
 perl-libnet                 noarch  3.15-513.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 289.4 KiB
 perl-libs                   aarch64 4:5.40.1-515.fc42    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   9.9 MiB
 perl-locale                 noarch  1.12-515.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   6.5 KiB
 perl-macros                 noarch  4:5.40.1-515.fc42    http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   5.5 KiB
 perl-mro                    aarch64 1.29-515.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  81.5 KiB
 perl-overload               noarch  1.37-515.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  71.5 KiB
 perl-overloading            noarch  0.02-515.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   4.8 KiB
 perl-parent                 noarch  1:0.244-2.fc42       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  10.3 KiB
 perl-podlators              noarch  1:6.0.2-3.fc42       http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 317.5 KiB
 perl-vars                   noarch  1.05-515.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   3.9 KiB
 python-pip-wheel            noarch  24.3.1-2.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.2 MiB
 python3                     aarch64 3.13.1-3.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  83.6 KiB
 python3-libs                aarch64 3.13.1-3.fc42        http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch  42.0 MiB
 python3-numpy               aarch64 1:2.2.2-2.fc42       copr_base                                                      33.8 MiB
 python3-numpy-f2py          aarch64 1:2.2.2-2.fc42       copr_base                                                       2.0 MiB
 tzdata                      noarch  2024b-2.fc42         http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch   1.6 MiB

Transaction Summary:
 Installing:       146 packages

Total size of inbound packages is 154 MiB. Need to download 18 MiB.
After this operation, 633 MiB extra will be used (install 633 MiB, remove 0 B).
[1/3] flexiblas-devel-0:3.4.4-7.fc42.aa 100% |   0.0   B/s |   0.0   B |  00m00s
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[20/27] libubsan-0:15.0.1-0.6.fc42.aarc 100% |   0.0   B/s |   0.0   B |  00m00s
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[21/28] flexiblas-netlib-0:3.4.4-7.fc42 100% |   0.0   B/s |   0.0   B |  00m00s
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[44/85] libaec-devel-0:1.1.3-2.fc42.aar 100% |   0.0   B/s |   0.0   B |  00m00s
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[47/88] libxcrypt-devel-0:4.4.38-4.fc42 100% |   0.0   B/s |   0.0   B |  00m00s
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[48/90] flexiblas-openblas-openmp64-0:3 100% |   0.0   B/s |   0.0   B |  00m00s
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[49/91] flexiblas-openblas-openmp-0:3.4 100% |   0.0   B/s |   0.0   B |  00m00s
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[50/92] python3-0:3.13.1-3.fc42.aarch64 100% |   0.0   B/s |   0.0   B |  00m00s
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[51/93] python3-libs-0:3.13.1-3.fc42.aa 100% |   0.0   B/s |   0.0   B |  00m00s
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[52/94] python3-numpy-1:2.2.2-2.fc42.aa 100% |   0.0   B/s |   0.0   B |  00m00s
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[53/95] tzdata-0:2024b-2.fc42.noarch    100% |   0.0   B/s |   0.0   B |  00m00s
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[56/98] python-pip-wheel-0:24.3.1-2.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[111/146] perl-macros-4:5.40.1-515.fc42 100% | 513.9 KiB/s |  12.3 KiB |  00m00s
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[113/146] boost-atomic-0:1.83.0-12.fc42 100% |   4.6 MiB/s |  18.7 KiB |  00m00s
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[116/146] perl-Fedora-VSP-0:0.001-36.fc 100% | 994.5 KiB/s |  22.9 KiB |  00m00s
[117/146] boost-context-0:1.83.0-12.fc4 100% |   5.3 MiB/s |  16.3 KiB |  00m00s
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[119/146] boost-coroutine-0:1.83.0-12.f 100% |   6.4 MiB/s |  19.6 KiB |  00m00s
[120/146] boost-date-time-0:1.83.0-12.f 100% |   4.9 MiB/s |  15.2 KiB |  00m00s
[121/146] boost-fiber-0:1.83.0-12.fc42. 100% |  13.5 MiB/s |  41.4 KiB |  00m00s
[122/146] boost-filesystem-0:1.83.0-12. 100% |  10.3 MiB/s |  63.5 KiB |  00m00s
[123/146] boost-graph-0:1.83.0-12.fc42. 100% |  23.3 MiB/s | 143.2 KiB |  00m00s
[124/146] boost-iostreams-0:1.83.0-12.f 100% |   2.3 MiB/s |  39.4 KiB |  00m00s
[125/146] boost-json-0:1.83.0-12.fc42.a 100% |  11.6 MiB/s | 142.7 KiB |  00m00s
[126/146] boost-locale-0:1.83.0-12.fc42 100% |  16.4 MiB/s | 201.0 KiB |  00m00s
[127/146] boost-nowide-0:1.83.0-12.fc42 100% |   3.3 MiB/s |  20.0 KiB |  00m00s
[128/146] boost-log-0:1.83.0-12.fc42.aa 100% |  44.2 MiB/s | 452.3 KiB |  00m00s
[129/146] boost-math-0:1.83.0-12.fc42.a 100% |  21.8 MiB/s | 268.0 KiB |  00m00s
[130/146] boost-python3-0:1.83.0-12.fc4 100% |  21.9 MiB/s |  89.7 KiB |  00m00s
[131/146] boost-program-options-0:1.83. 100% |  17.0 MiB/s | 104.2 KiB |  00m00s
[132/146] boost-random-0:1.83.0-12.fc42 100% |   3.3 MiB/s |  23.5 KiB |  00m00s
[133/146] boost-regex-0:1.83.0-12.fc42. 100% |  21.5 MiB/s | 110.1 KiB |  00m00s
[134/146] boost-serialization-0:1.83.0- 100% |  20.4 MiB/s | 125.4 KiB |  00m00s
[135/146] boost-system-0:1.83.0-12.fc42 100% |   2.5 MiB/s |  15.1 KiB |  00m00s
[136/146] boost-stacktrace-0:1.83.0-12. 100% |   3.2 MiB/s |  29.3 KiB |  00m00s
[137/146] boost-test-0:1.83.0-12.fc42.a 100% |  30.9 MiB/s | 221.6 KiB |  00m00s
[138/146] boost-thread-0:1.83.0-12.fc42 100% |  11.4 MiB/s |  58.5 KiB |  00m00s
[139/146] boost-timer-0:1.83.0-12.fc42. 100% |   4.2 MiB/s |  21.5 KiB |  00m00s
[140/146] boost-type_erasure-0:1.83.0-1 100% |   6.1 MiB/s |  31.2 KiB |  00m00s
[141/146] boost-wave-0:1.83.0-12.fc42.a 100% |  44.5 MiB/s | 227.8 KiB |  00m00s
[142/146] armadillo-0:12.8.1-6.fc42.aar 100% |  30.0 MiB/s |  30.7 KiB |  00m00s
[143/146] arpack-devel-0:3.9.1-6.fc42.a 100% |  11.0 MiB/s |  22.6 KiB |  00m00s
[144/146] SuperLU-devel-0:7.0.0-2.fc42. 100% |   3.4 MiB/s |  27.6 KiB |  00m00s
[145/146] SuperLU-0:7.0.0-2.fc42.aarch6 100% |  16.4 MiB/s | 168.2 KiB |  00m00s
[146/146] metis-0:5.1.0.3-7.fc42.aarch6 100% |  36.8 MiB/s | 565.4 KiB |  00m00s
--------------------------------------------------------------------------------
[146/146] Total                         100% |  56.3 MiB/s |  17.8 MiB |  00m00s
Running transaction
[  1/148] Verify package files          100% | 256.0   B/s | 146.0   B |  00m01s
[  2/148] Prepare transaction           100% | 802.0   B/s | 146.0   B |  00m00s
[  3/148] Installing boost-system-0:1.8 100% |  67.6 MiB/s |  69.2 KiB |  00m00s
[  4/148] Installing libgfortran-0:15.0 100% | 329.7 MiB/s |   1.6 MiB |  00m00s
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[  8/148] Installing libmpc-0:1.3.1-7.f 100% | 150.6 MiB/s | 154.2 KiB |  00m00s
[  9/148] Installing boost-regex-0:1.83 100% | 261.1 MiB/s | 267.4 KiB |  00m00s
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[ 13/148] Installing openblas-0:0.3.29- 100% | 110.8 MiB/s | 113.5 KiB |  00m00s
[ 14/148] Installing libaec-0:1.1.3-2.f 100% | 152.8 MiB/s | 156.4 KiB |  00m00s
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[ 22/148] Installing hdf5-0:1.14.5-2.fc 100% | 187.5 MiB/s |   8.1 MiB |  00m00s
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[ 24/148] Installing openblas-openmp64- 100% | 429.9 MiB/s |  20.2 MiB |  00m00s
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[ 26/148] Installing flexiblas-0:3.4.4- 100% |  48.5 MiB/s |  49.7 KiB |  00m00s
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[ 30/148] Installing flexiblas-openblas 100% |  66.6 MiB/s |  68.2 KiB |  00m00s
[ 31/148] Installing arpack-0:3.9.1-6.f 100% | 181.0 MiB/s | 556.0 KiB |  00m00s
[ 32/148] Installing armadillo-0:12.8.1 100% | 143.9 MiB/s | 147.4 KiB |  00m00s
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[ 34/148] Installing flexiblas-devel-0: 100% | 194.5 MiB/s |   4.9 MiB |  00m00s
[ 35/148] Installing boost-fiber-0:1.83 100% | 132.2 MiB/s | 135.4 KiB |  00m00s
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[ 37/148] Installing boost-coroutine-0: 100% |  68.4 MiB/s |  70.1 KiB |  00m00s
[ 38/148] Installing boost-graph-0:1.83 100% | 163.4 MiB/s | 334.7 KiB |  00m00s
[ 39/148] Installing cpp-0:15.0.1-0.6.f 100% | 262.1 MiB/s |  35.4 MiB |  00m00s
[ 40/148] Installing libicu-devel-0:76. 100% | 142.5 MiB/s |   5.1 MiB |  00m00s
[ 41/148] Installing boost-locale-0:1.8 100% | 193.9 MiB/s | 595.8 KiB |  00m00s
[ 42/148] Installing boost-type_erasure 100% |  69.4 MiB/s |  71.1 KiB |  00m00s
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[ 45/148] Installing ncurses-0:6.5-5.20 100% |  30.3 MiB/s | 898.4 KiB |  00m00s
[ 46/148] Installing groff-base-0:1.23. 100% |  89.3 MiB/s |   4.2 MiB |  00m00s
[ 47/148] Installing perl-Digest-0:1.20 100% |  36.2 MiB/s |  37.1 KiB |  00m00s
[ 48/148] Installing perl-B-0:1.89-515. 100% | 177.5 MiB/s | 545.3 KiB |  00m00s
[ 49/148] Installing perl-FileHandle-0: 100% |   0.0   B/s |   9.8 KiB |  00m00s
[ 50/148] Installing perl-Digest-MD5-0: 100% | 103.1 MiB/s | 105.6 KiB |  00m00s
[ 51/148] Installing perl-MIME-Base32-0 100% |  31.4 MiB/s |  32.2 KiB |  00m00s
[ 52/148] Installing perl-Data-Dumper-0 100% | 134.3 MiB/s | 137.5 KiB |  00m00s
[ 53/148] Installing perl-libnet-0:3.15 100% | 143.9 MiB/s | 294.7 KiB |  00m00s
[ 54/148] Installing perl-AutoLoader-0: 100% |   0.0   B/s |  20.9 KiB |  00m00s
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[ 56/148] Installing perl-URI-0:5.31-2. 100% |  65.8 MiB/s | 269.6 KiB |  00m00s
[ 57/148] Installing perl-Time-Local-2: 100% |  68.9 MiB/s |  70.6 KiB |  00m00s
[ 58/148] Installing perl-File-Path-0:2 100% |  63.0 MiB/s |  64.5 KiB |  00m00s
[ 59/148] Installing perl-if-0:0.61.000 100% |   0.0   B/s |   6.2 KiB |  00m00s
[ 60/148] Installing perl-Pod-Escapes-1 100% |  25.3 MiB/s |  25.9 KiB |  00m00s
[ 61/148] Installing perl-Text-Tabs+Wra 100% |  23.3 MiB/s |  23.9 KiB |  00m00s
[ 62/148] Installing perl-locale-0:1.12 100% |   0.0   B/s |   6.9 KiB |  00m00s
[ 63/148] Installing perl-Net-SSLeay-0: 100% | 179.1 MiB/s |   1.4 MiB |  00m00s
[ 64/148] Installing perl-IO-Socket-SSL 100% | 230.3 MiB/s | 707.4 KiB |  00m00s
[ 65/148] Installing perl-Class-Struct- 100% |   0.0   B/s |  25.9 KiB |  00m00s
[ 66/148] Installing perl-Term-ANSIColo 100% |  96.9 MiB/s |  99.2 KiB |  00m00s
[ 67/148] Installing perl-Term-Cap-0:1. 100% |  29.9 MiB/s |  30.6 KiB |  00m00s
[ 68/148] Installing perl-IPC-Open3-0:1 100% |   0.0   B/s |  23.3 KiB |  00m00s
[ 69/148] Installing perl-File-Temp-1:0 100% | 160.2 MiB/s | 164.1 KiB |  00m00s
[ 70/148] Installing perl-POSIX-0:2.20- 100% | 129.1 MiB/s | 264.4 KiB |  00m00s
[ 71/148] Installing perl-Pod-Simple-1: 100% | 139.3 MiB/s | 570.4 KiB |  00m00s
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[ 73/148] Installing perl-SelectSaver-0 100% |   0.0   B/s |   2.6 KiB |  00m00s
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[ 75/148] Installing perl-Socket-4:2.03 100% |  71.3 MiB/s | 146.0 KiB |  00m00s
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[ 77/148] Installing perl-podlators-1:6 100% |  16.5 MiB/s | 321.4 KiB |  00m00s
[ 78/148] Installing perl-Pod-Perldoc-0 100% |   9.2 MiB/s | 169.2 KiB |  00m00s
[ 79/148] Installing perl-mro-0:1.29-51 100% |  80.7 MiB/s |  82.7 KiB |  00m00s
[ 80/148] Installing perl-overloading-0 100% |   5.4 MiB/s |   5.5 KiB |  00m00s
[ 81/148] Installing perl-Fcntl-0:1.18- 100% |  91.9 MiB/s |  94.1 KiB |  00m00s
[ 82/148] Installing perl-base-0:2.27-5 100% |   0.0   B/s |  12.9 KiB |  00m00s
[ 83/148] Installing perl-Text-ParseWor 100% |  14.2 MiB/s |  14.6 KiB |  00m00s
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[ 86/148] Installing perl-Errno-0:1.38- 100% |   0.0   B/s |   8.7 KiB |  00m00s
[ 87/148] Installing perl-Scalar-List-U 100% |  76.4 MiB/s | 156.6 KiB |  00m00s
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[ 90/148] Installing perl-vars-0:1.05-5 100% |   0.0   B/s |   4.3 KiB |  00m00s
[ 91/148] Installing perl-MIME-Base64-0 100% |  94.0 MiB/s |  96.3 KiB |  00m00s
[ 92/148] Installing perl-parent-1:0.24 100% |   0.0   B/s |  11.0 KiB |  00m00s
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[ 94/148] Installing perl-Storable-1:3. 100% | 120.1 MiB/s | 245.9 KiB |  00m00s
[ 95/148] Installing perl-Getopt-Long-1 100% | 143.8 MiB/s | 147.2 KiB |  00m00s
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[ 99/148] Installing perl-PathTools-0:3 100% | 111.6 MiB/s | 228.6 KiB |  00m00s
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[102/148] Installing perl-libs-4:5.40.1 100% | 196.5 MiB/s |  10.0 MiB |  00m00s
[103/148] Installing perl-interpreter-4 100% |  10.1 MiB/s | 175.8 KiB |  00m00s
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[106/148] Installing python-pip-wheel-0 100% | 622.1 MiB/s |   1.2 MiB |  00m00s
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Warning: skipped OpenPGP checks for 146 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch
Complete!
Finish: build setup for mmseq-1.0.11-23.fc42.src.rpm
Start: rpmbuild mmseq-1.0.11-23.fc42.src.rpm
Building target platforms: aarch64
Building for target aarch64
setting SOURCE_DATE_EPOCH=1738454400
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.UPIVh4
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ test -d /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/rm -rf /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.a28YVA
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ rm -rf mmseq-1.0.11
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/1.0.11.zip
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd mmseq-1.0.11
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ echo 'Patch #2 (mmseq-zlib.patch):'
Patch #2 (mmseq-zlib.patch):
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .mmseq-zlib.patch --fuzz=0
patching file src/Makefile
+ rm -f bin/offsetGTF-linux bin/postdiff-linux
+ sed -e s/-lblas/-lflexiblas/g -e s/-llapack/-lflexiblas/g -i src/Makefile
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.AR6EZz
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ cd src
+ make -j4 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
g++ -O3 -c sokal.cc
g++ -fopenmp -O3 -c uh.cpp 
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O3 hitsio.cpp hitsio.hpp -c hitsio.cpp
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c -o fasta.o fasta.c
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 offsetGTF.cpp -o ../bin/offsetGTF
offsetGTF.cpp: In function ‘int main(int, char**)’:
offsetGTF.cpp:115:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  115 |       while(gff_ind < gff_positions[chrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:117:57: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  117 |               pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:114:11: warning: unused variable ‘curoff’ [-Wunused-variable]
  114 |       int curoff=offset;
      |           ^~~~~~
offsetGTF.cpp:150:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  150 |       while(gff_ind < gff_positions[prevchrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:163:53: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  163 |           pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:177:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  177 |     while(gff_ind < gff_positions[chrom].size() && gff_positions[chrom][gff_ind] <= pos) {
      |           ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:235:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  235 |     for(int i=5; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
offsetGTF.cpp:237:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  237 |       if(i < tokens.size()-1) {
      |          ~~^~~~~~~~~~~~~~~~~
offsetGTF.cpp:108:7: warning: unused variable ‘gff_pos’ [-Wunused-variable]
  108 |   int gff_pos= -1;
      |       ^~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 t2g_hits.cpp -o ../bin/t2g_hits
t2g_hits.cpp: In function ‘int main(int, char**)’:
t2g_hits.cpp:90:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   90 |         for(int i=2; i < tokens.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~
t2g_hits.cpp:112:13: warning: ignoring return value of ‘_FIter std::unique(_FIter, _FIter) [with _FIter = __gnu_cxx::__normal_iterator<__cxx11::basic_string<char>*, vector<__cxx11::basic_string<char> > >]’, declared with attribute ‘nodiscard’ [-Wunused-result]
  112 |       unique(comb.begin(), comb.end());
      |       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/15/algorithm:63,
                 from t2g_hits.cpp:27:
/usr/include/c++/15/bits/stl_algo.h:875:5: note: declared here
  875 |     unique(_ForwardIterator __first, _ForwardIterator __last)
      |     ^~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O2 bms.cpp bms.hpp -c bms.cpp
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 fasta.o extract_transcripts.cpp -o ../bin/extract_transcripts
extract_transcripts.cpp: In function ‘int main(int, char**)’:
extract_transcripts.cpp:122:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  122 |       for(int i=0; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
extract_transcripts.cpp:169:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  169 |     for(int i=0; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:195:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  195 |       for(int i=0; i < it->starts()->size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~
extract_transcripts.cpp:203:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  203 |       while(faline < stitch.size()) {
      |             ~~~~~~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:108:7: warning: unused variable ‘line’ [-Wunused-variable]
  108 |   int line=0;
      |       ^~~~
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -DARMA_64BIT_WORD -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O3 uh.o sokal.o mmcollapse.cpp -o ../bin/mmcollapse -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmcollapse.cpp: In function ‘void get_unidentifiable_transcripts(std::string, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, bool>&)’:
mmcollapse.cpp:158:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  158 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:213:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  213 |     for(int i=0; i < tokens2.size(); i++) isIdent[tokens2[i]]=1;
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  259 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void collapse(arma::cube&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<int, std::allocator<int> >)’:
mmcollapse.cpp:400:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  400 |   for(int s=0; s < R.n_slices; s++) {
      |                ~~^~~~~~~~~~~~
mmcollapse.cpp:401:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  401 |     for(int t=0; t < candidates.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:402:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  402 |       for(int j=1; j < indexes.size(); j++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:414:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  414 |     for(int j=1; j < indexes.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:417:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  417 |       for(int i=0; i < R.n_cols; i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:426:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  426 |   for(int i=0; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:431:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  431 |   for(int i=1; i < tset.size(); i++) {
      |                ~~^~~~~~~~~~~~~
mmcollapse.cpp:437:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  437 |   for(int i=1; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘std::map<int, int> join_traces(arma::mat&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >)’:
mmcollapse.cpp:445:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  445 |   for(int t=0; t < allnames.size(); t++) tmap[allnames[t]]=t;
      |                ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:452:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  452 |   for(int c=0; c < candidates.size(); c++) {
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:456:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  456 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:464:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  464 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:469:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  469 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:476:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  476 |   for(int i=0; i < toshed.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void mean_corrs(const arma::cube&, const arma::umat&, arma::mat&, arma::mat&, std::vector<int, std::allocator<int> >, std::vector<int, std::allocator<int> >, double)’:
mmcollapse.cpp:486:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  486 |     for(int v= 0; v < R.n_rows; v++) {
      |                   ~~^~~~~~~~~~
mmcollapse.cpp:492:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare]
  492 |       for(int i=0; i < u.size(); i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp: In function ‘void get_corrs(arma::cube&, arma::mat&, const std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&)’:
mmcollapse.cpp:519:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  519 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:543:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  543 |         for(int t=0; t < tokens.size(); t++) {
      |                      ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘int main(int, char**)’:
mmcollapse.cpp:632:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  632 |   for(int i=1; i < basenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:691:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  691 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:707:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  707 |   for(int i=0; i < candidates.size(); i++) ts.push_back(i);
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:732:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  732 |     for(int i=0 ;i < maxcorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:738:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  738 |     for(int i=0 ;i < mincorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:802:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  802 |         for(int i=0 ;i < maxcorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:808:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  808 |         for(int i=0 ;i < mincorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:827:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  827 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:852:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  852 |       for(int t=0; t < tokens.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:882:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  882 |       for(int t=0; t < tokens2.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:934:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  934 |     for(int t=0; t < M.n_cols; t++) {
      |                  ~~^~~~~~~~~~
mmcollapse.cpp:963:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  963 |     for(int i=1; i < tokens2.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:976:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  976 |       if(MM.size1() < i+1 ) factor1=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:977:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  977 |       if(MM.size2() < j+1 ) factor2=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:1010:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1010 |     for(int t=0; t < ids.size(); t++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1083:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1083 |     for(int i=0; i < ids.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1092:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1092 |     for(int v = 0; v < M.n_cols; v++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:840:9: warning: unused variable ‘isident’ [-Wunused-variable]
  840 |     int isident=0;
      |         ^~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O3 sokal.o uh.o hitsio.o mmseq.cpp -o ../bin/mmseq -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O3 fasta.o hitsio.o bam2hits.cpp -o ../bin/bam2hits -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmseq.cpp: In function ‘std::vector<double> meanvar(std::vector<double>, double, double)’:
mmseq.cpp:130:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  130 |   for(int i=0;i < v.size(); i++) {
      |               ~~^~~~~~~~~~
mmseq.cpp: In function ‘int main(int, char**)’:
mmseq.cpp:244:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  244 |       for(int i=0; i < tokens.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~
mmseq.cpp:423:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  423 |       if(M.size1() < m ) factor1=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:424:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  424 |       if(M.size2() < n ) factor2=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:594:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  594 |   for(unsigned t=0; t < n; t++)  {
      |                     ~~^~~
mmseq.cpp:736:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  736 |     for(unsigned t=0; t < n; t++)
      |                       ~~^~~
mmseq.cpp:765:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  765 |       for(unsigned t=0; t < n; t++)
      |                         ~~^~~
mmseq.cpp:774:11: warning: unused variable ‘threadid’ [-Wunused-variable]
  774 |       int threadid=OMP_GET_THREAD_NUM;
      |           ^~~~~~~~
mmseq.cpp:829:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  829 |   for(unsigned t=0; t < n; t++)
      |                     ~~^~~
mmseq.cpp:912:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  912 |       for(unsigned t=0; t < n; t++) {
      |                         ~~^~~
mmseq.cpp:940:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  940 |   for(int i=0; i < identical_transcripts.size() * trace_length; i++) mu_trace_identical[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:961:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  961 |   for(int i=0; i < gene2transcripts.size() * trace_length; i++) mu_trace_gene[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1098:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1098 |   for(unsigned t=0; t < n; t++) gofs << indexSid[t] << " ";
      |                     ~~^~~
mmseq.cpp:1112:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1112 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1136:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1136 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1144:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1144 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1149:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1149 |   for(int i=0;i < identical_transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1156:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1156 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1161:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1161 |   for(int i=0;i < gene2transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1168:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1168 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1179:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1179 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1189:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1189 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1208:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1208 |     for(int t=0; t < identical_transcripts.size() ; t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1212:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1212 |     for(int t=0; t < gene2transcripts.size(); t++){
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1226:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1226 |   for(int i=0; i < identical_transcripts.size() ; i++) meanmu_identical[i] /= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1227:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1227 |   for(int i=0; i < gene2transcripts.size(); i++) meanmu_gene[i]/= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1330:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1330 |   for(int t=0; t < identical_transcripts.size(); t++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1349:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1349 |   for(int g=0; g < gene2transcripts.size(); g++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1473:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1473 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1475:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1475 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1482:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1482 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1484:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1484 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1506 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1508:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1508 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1514:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1514 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1516:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1516 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1536:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1536 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1538:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1538 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1544:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1544 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1546:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1546 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1560:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1560 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1562:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1562 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1582:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1582 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1584:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1584 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1599:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1599 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1601:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1601 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1619:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1619 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1621:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1621 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1644:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1644 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1646:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1646 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1656:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1656 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1658:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1658 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:308:8: warning: unused variable ‘buf16384’ [-Wunused-variable]
  308 |   char buf16384[16384];
      |        ^~~~~~~~
mmseq.cpp:391:8: warning: variable ‘doublehit’ set but not used [-Wunused-but-set-variable]
  391 |   bool doublehit;
      |        ^~~~~~~~~
bam2hits.cpp: In function ‘void outputMergeHeaders(std::vector<FastaRecord>&, char, const char*, bool, HitsfileWriter&)’:
bam2hits.cpp:109:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  109 |   for(int i=0; i < sortedfastas.size()-1; i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:119:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  119 |       for(int j=0; j < curSet.size()-1; j++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  137 |   for(int j=0; j < curSet.size()-1; j++) {
      |                ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp: In function ‘std::vector<Alignment> repetitiveTranscriptFilter(std::vector<Alignment>&, int)’:
bam2hits.cpp:218:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Alignment>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  218 |   for(int j=0; j < alns.size(); j++) {
      |                ~~^~~~~~~~~~~~~
bam2hits.cpp:219:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  219 |     if(i < torem.size() && j==torem[i]) {
      |        ~~^~~~~~~~~~~~~~
bam2hits.cpp: In function ‘int main(int, char**)’:
bam2hits.cpp:518:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  518 |         if(_B != tg[0].size()-2) {
      |            ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:520:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  520 |           if(_A == tg[0].size()-2) {
      |              ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:522:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  522 |             if(_A != tg[1].size()-2) {
      |                ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:558:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  558 |       for(int i=1; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:609:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  609 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:645:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  645 |     for(int i=0;i < fastas.size(); i++) transcriptCounts[i] /= (double)fastas[i].seq().size();
      |                 ~~^~~~~~~~~~~~~~~
bam2hits.cpp:659:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  659 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:662:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  662 |         for(int j =0; j < fastas[i].seq().size(); j++) {
      |                       ~~^~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:663:44: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  663 |           int tag = (j <= MSEQ_BEFORE || j >= fastas[i].seq().size()-MSEQ_AFTER) ? -2 : 0;
      |                                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:791:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  791 |       for(int j=MSEQ_BEFORE + 1; j <= fastas[i].seq().length()-MSEQ_AFTER; j++) {
      |                                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:920:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  920 |     for(int j=1; j < frequencies.size()-WINDOWFORISIZEMODE + 1; j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:948:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  948 |     for(int i=0; i < testIsizes.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
bam2hits.cpp:959:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  959 |     for(int i=0; i < heights.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:997:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  997 |       for(int fl=1; fl <= (it->seq()).size(); fl++) {
      |                     ~~~^~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:1091:56: warning: comparing the result of pointer addition ‘(bam_aux_get(((const bam1_t*)line), ((const char*)"NM")) + ((sizetype)ait.__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >::operator->()->Alignment::NM()))’ and NULL [-Waddress]
 1091 |             ait->NM(ait->NM() + bam_aux_get(line,"NM") == NULL ? 0 : bam_aux2i(bam_aux_get(line,"NM")));
      |                                                        ^
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O3 hitsio.o hitstools.cpp -o ../bin/hitstools -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O2 bms.o mmdiff.cpp -o ../bin/mmdiff -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
hitstools.cpp: In function ‘void convert(char*, std::string)’:
hitstools.cpp:51:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   51 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp: In function ‘int main(int, char**)’:
hitstools.cpp:96:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   96 |                 for(int i = 0; i < transcriptName.size(); i++) {
      |                                ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp:136:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  136 |     for(int i = 0; i < transcriptName.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp: In function ‘void parse_mmseq(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, int, int, double, bool)’:
mmdiff.cpp:100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  100 |   for(int i=0; i < filenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:111:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  111 |     for(int j=0; j < tokens.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp:138:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  138 |       if(k + 1 > features.size()) {
      |          ~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:147:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  147 |       if(k+1 > y.n_rows) {
      |          ~~~~^~~~~~~~~~
mmdiff.cpp:152:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  152 |       if(!useprops && tokens[lmg_ind]=="NA" || useprops && tokens[mp_ind]=="NA") {
      |          ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:173:62: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  173 |   if(range_start >=0 && range_end > range_start && range_end < y.n_rows) {
      |                                                    ~~~~~~~~~~^~~~~~~~~~
mmdiff.cpp:94:46: warning: variable ‘mcse_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                              ^~~~~~~~
mmdiff.cpp:94:59: warning: variable ‘iact_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                                           ^~~~~~~~
mmdiff.cpp: In function ‘void apply_normalisation(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, arma::Mat<double>&, arma::Mat<double>&, double)’:
mmdiff.cpp:212:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  212 |   for(int i=0; i < uh.n_rows; i++) {
      |                ~~^~~~~~~~~~~
mmdiff.cpp:214:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  214 |     for(int j=0; j < uh.n_cols; j++) {
      |                  ~~^~~~~~~~~~~
mmdiff.cpp:230:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  230 |   for(int i=0; i < use.size(); i++) {
      |                ~~^~~~~~~~~~~~
mmdiff.cpp:232:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  232 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp:239:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  239 |   for(int sample=0; sample < y.n_cols; sample++) {
      |                     ~~~~~~~^~~~~~~~~~
mmdiff.cpp:241:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  241 |     for(int i=0; i < use.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmdiff.cpp:246:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  246 |     for(int i=0; i < y.n_rows; i++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void apply_permutation(arma::Mat<double>&, arma::Mat<double>&)’:
mmdiff.cpp:257:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  257 |   for(int j=0; j< y.n_cols; j++) randinds.push_back(j);
      |                ~^~~~~~~~~~
mmdiff.cpp:258:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  258 |   for(int i=0; i < y.n_rows; i++) {
      |                ~~^~~~~~~~~~
mmdiff.cpp:259:19: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<int*, vector<int, allocator<int> > >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations]
  259 |     random_shuffle(randinds.begin(), randinds.end());
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/15/algorithm:63,
                 from mmdiff.cpp:31:
/usr/include/c++/15/bits/stl_algo.h:4509:5: note: declared here
 4509 |     random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last)
      |     ^~~~~~~~~~~~~~
mmdiff.cpp:260:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  260 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void parse_matrices(std::string, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<int>&, int)’:
mmdiff.cpp:310:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  310 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp: In function ‘int main(int, char**)’:
mmdiff.cpp:420:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  420 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:431:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  431 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:439:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  439 |       while(ss < arguments.size()) {
      |             ~~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:451:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  451 |       if(ss != arguments.size()) {
      |          ~~~^~~~~~~~~~~~~~~~~~~
mmdiff.cpp:578:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  578 |   for(int i=0; i < arguments.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:640:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  640 |     for(int i=0; i < simple_de.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:759:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  759 |     if(inburnin && iter == OUTLEN/10 || !inburnin && iter==tuneiters) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:764:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  764 |     for(int feature=0; feature < features.size(); feature++) {
      |                        ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:837:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  837 |     if(inburnin && iter % subsample_burnin ==0 || !inburnin && iter >= tuneiters && (iter - tuneiters) % subsample_iter == 0) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:886:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  886 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
mmdiff.cpp:898:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  898 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:902:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string<char>::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare]
  902 |       found2 = found2==string::npos ? -1 : found2;
      |                ~~~~~~^~~~~~~~~~~~~~
mmdiff.cpp:907:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  907 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:909:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  909 |     if(f < samplenames.size()-1) cout << "\t";
      |        ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:914:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  914 |   for(int feature=0; feature < features.size(); feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:926:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  926 |         for(int l=0; l < M.n_cols; l++) {
      |                      ~~^~~~~~~~~~
mmdiff.cpp:936:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  936 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:939:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  939 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:941:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  941 |       if(f < samplenames.size()-1) cout << "\t";
      |          ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:951:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  951 |       for(int feature=0; feature < features.size(); feature++) {
      |                          ~~~~~~~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘initialise_streams’:
bms.cpp:1408:30: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
 1408 |   ofs = new ofstream[nstreams];
      |                              ^
/usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here
  140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t)
      |                          ^
/usr/bin/ld: /tmp/ccLxQGc0.ltrans1.ltrans.o: in function `main':
/builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/src/bam2hits.cpp:653:(.text.startup+0x3d70): warning: the use of `tmpnam' is dangerous, better use `mkstemp'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Fvg16M
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ '[' /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
++ dirname /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build
+ mkdir /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/bam2hits /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/extract_transcripts /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/hitstools /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmcollapse /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmdiff /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmseq /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/offsetGTF /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/t2g_hits /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/fastagrep.sh bin/mouse_strain_transcriptome.sh bin/usage.sh /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/filterGTF.rb bin/haploref.rb bin/testregexp.rb /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/ensembl_gtf_to_gff.pl /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 1.0.11-23.fc42 --unique-debug-suffix -1.0.11-23.fc42.aarch64 --unique-debug-src-base mmseq-1.0.11-23.fc42.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11
find-debuginfo: starting
Extracting debug info from 8 files
DWARF-compressing 8 files
sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/mmseq-1.0.11-23.fc42.aarch64
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/fastagrep.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/mouse_strain_transcriptome.sh from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/bin/usage.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/filterGTF.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/haploref.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/testregexp.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/ensembl_gtf_to_gff.pl from /usr/bin/env perl to #!/usr/bin/perl
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
Scanned 12 directories and 40 files,
               processed 0 inodes,
               0 modified (0 replaced + 0 rewritten),
               0 unsupported format, 0 errors
Reading /builddir/build/BUILD/mmseq-1.0.11-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.yGLwWx
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
++ bin/mmseq --version
++ true
+ test mmseq-1.0.11 = mmseq-1.0.11
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: mmseq-1.0.11-23.fc42.aarch64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.Q94uJP
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ cd mmseq-1.0.11
+ DOCDIR=/builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/README.md /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/COPYING /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/doc /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: mmseq = 1.0.11-23.fc42 mmseq(aarch-64) = 1.0.11-23.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/bash /usr/bin/perl /usr/bin/ruby /usr/bin/sh ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libboost_iostreams.so.1.83.0()(64bit) libboost_regex.so.1.83.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgsl.so.27()(64bit) libgslcblas.so.0()(64bit) libhts.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) perl(strict) rtld(GNU_HASH)
Processing files: mmseq-debugsource-1.0.11-23.fc42.aarch64
Provides: mmseq-debugsource = 1.0.11-23.fc42 mmseq-debugsource(aarch-64) = 1.0.11-23.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: mmseq-debuginfo-1.0.11-23.fc42.aarch64
Provides: debuginfo(build-id) = 093b9727a54cfa4c9f3d578303f30e7fa82c22c8 debuginfo(build-id) = 295875c70ea27ce50ec5c292ab10d5f8860c4593 debuginfo(build-id) = 36ba6c10e9a5958ad2b099943270dc42491d2208 debuginfo(build-id) = 4ca78d7473090d4540e5abf873b6a806fe9e1288 debuginfo(build-id) = 7bd12860269311c46b5e10b775c4790850e6ac3a debuginfo(build-id) = 7f29b0e04015c2e93e90e8472152da5ccb7b304d debuginfo(build-id) = 996834237e40826aad130431d4645460caaa7165 debuginfo(build-id) = e296018bf36833958d32d4ef586b32ad2bf0e2db mmseq-debuginfo = 1.0.11-23.fc42 mmseq-debuginfo(aarch-64) = 1.0.11-23.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: mmseq-debugsource(aarch-64) = 1.0.11-23.fc42
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
Wrote: /builddir/build/RPMS/mmseq-debugsource-1.0.11-23.fc42.aarch64.rpm
Wrote: /builddir/build/RPMS/mmseq-1.0.11-23.fc42.aarch64.rpm
Wrote: /builddir/build/RPMS/mmseq-debuginfo-1.0.11-23.fc42.aarch64.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.o7h4IP
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ test -d /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/mmseq-1.0.11-build
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild mmseq-1.0.11-23.fc42.src.rpm
Finish: build phase for mmseq-1.0.11-23.fc42.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-41-aarch64-1738532761.194760/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
INFO: Done(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-23.fc42.src.rpm) Config(child) 1 minutes 1 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "23.fc42",
            "arch": "aarch64"
        },
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "23.fc42",
            "arch": "src"
        },
        {
            "name": "mmseq-debugsource",
            "epoch": null,
            "version": "1.0.11",
            "release": "23.fc42",
            "arch": "aarch64"
        },
        {
            "name": "mmseq-debuginfo",
            "epoch": null,
            "version": "1.0.11",
            "release": "23.fc42",
            "arch": "aarch64"
        }
    ]
}
RPMResults finished