Warning: Permanently added '44.192.18.102' (ED25519) to the list of known hosts. Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-0iqu19le/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-0iqu19le/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1738534848.203216 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.0 starting (python version = 3.13.0, NVR = mock-6.0-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-0iqu19le/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-0iqu19le/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1738534848.203216 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-0iqu19le/mmseq/mmseq.spec) Config(fedora-41-i686) Start: clean chroot Finish: clean chroot Mock Version: 6.0 INFO: Mock Version: 6.0 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-i686-bootstrap-1738534848.203216/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:41 INFO: Pulling image: registry.fedoraproject.org/fedora:41 INFO: Tagging container image as mock-bootstrap-8601d53e-5088-41fe-9286-6fbca8f7ba50 INFO: Checking that a432b057a522737c229d2aac9b029f55bf2a44eb3f423e4e4ece2acb8a304652 image matches host's architecture INFO: Copy content of container a432b057a522737c229d2aac9b029f55bf2a44eb3f423e4e4ece2acb8a304652 to /var/lib/mock/fedora-41-i686-bootstrap-1738534848.203216/root INFO: mounting a432b057a522737c229d2aac9b029f55bf2a44eb3f423e4e4ece2acb8a304652 with podman image mount INFO: image a432b057a522737c229d2aac9b029f55bf2a44eb3f423e4e4ece2acb8a304652 as /var/lib/containers/storage/overlay/c9636add90844f42998958a532f08e880f2904e56e7e03e6d453e29ae1b586c4/merged INFO: umounting image a432b057a522737c229d2aac9b029f55bf2a44eb3f423e4e4ece2acb8a304652 (/var/lib/containers/storage/overlay/c9636add90844f42998958a532f08e880f2904e56e7e03e6d453e29ae1b586c4/merged) with podman image umount INFO: Removing image mock-bootstrap-8601d53e-5088-41fe-9286-6fbca8f7ba50 INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-i686-1738534848.203216/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc41.x86_64 rpm-sequoia-1.7.0-3.fc41.x86_64 dnf5-5.2.8.1-3.fc41.x86_64 dnf5-plugins-5.2.8.1-3.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: local 100% | 83.3 MiB/s | 12.7 MiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 139.6 MiB/s | 12.6 MiB | 00m00s Copr repository 100% | 55.6 MiB/s | 2.7 MiB | 00m00s Repositories loaded. 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB gzip i686 1.13-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 387.9 KiB info i686 7.2-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 360.4 KiB patch i686 2.7.6-26.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 301.8 KiB redhat-rpm-config noarch 342-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 186.8 KiB rpm-build i686 4.20.0-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 149.0 KiB sed i686 4.9-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 860.4 KiB shadow-utils i686 2:4.17.0-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.9 MiB tar i686 2:1.35-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB unzip i686 6.0-66.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 387.7 KiB util-linux i686 2.40.4-2.fc42 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B dbus-broker i686 36-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 397.6 KiB dbus-common noarch 1:1.16.0-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.2 KiB debugedit i686 5.1-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 210.0 KiB dwz i686 0.15-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 309.0 KiB ed i686 1.21-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 145.3 KiB efi-srpm-macros noarch 6-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.1 KiB elfutils i686 0.192-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.6 MiB elfutils-debuginfod-client i686 0.192-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 82.2 KiB elfutils-default-yama-scope noarch 0.192-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 KiB 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 779.0 B glibc i686 2.40.9000-35.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.5 MiB glibc-common i686 2.40.9000-35.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB glibc-gconv-extra i686 2.40.9000-35.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.7 MiB gmp i686 1:6.3.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 738.5 KiB gnat-srpm-macros noarch 6-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 KiB go-srpm-macros noarch 3.6.0-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 60.8 KiB jansson i686 2.14-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 92.3 KiB json-c i686 0.18-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 89.9 KiB kernel-srpm-macros noarch 1.0-25.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 672.3 KiB openssl-libs i686 1:3.2.2-14.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.3 MiB p11-kit i686 0.25.5-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB p11-kit-trust i686 0.25.5-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 357.5 KiB package-notes-srpm-macros noarch 0.5-13.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 KiB pam i686 1.7.0-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB pam-libs i686 1.7.0-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 128.4 KiB pcre2 i686 10.44-1.fc42.2 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 639.7 KiB pcre2-syntax noarch 10.44-1.fc42.2 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 251.6 KiB perl-srpm-macros noarch 1-57.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0 B pkgconf i686 2.3.0-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 82.9 KiB pkgconf-m4 noarch 2.3.0-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.4 KiB pkgconf-pkg-config i686 2.3.0-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 979.0 B popt i686 1.19-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 135.8 KiB publicsuffix-list-dafsa noarch 20250116-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 68.5 KiB pyproject-srpm-macros noarch 1.16.4-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB python-srpm-macros noarch 3.13-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 500.0 B qt6-srpm-macros noarch 6.8.1-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0 B readline i686 8.2-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 457.3 KiB rpm i686 4.20.0-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB rpm-build-libs i686 4.20.0-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 205.3 KiB rpm-libs i686 4.20.0-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 760.7 KiB rpm-sequoia i686 1.7.0-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.6 MiB rust-srpm-macros noarch 26.3-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 KiB setup noarch 2.15.0-10.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.7 KiB sqlite-libs i686 3.47.2-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB systemd i686 257.2-17.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 16.7 MiB systemd-libs i686 257.2-17.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 MiB systemd-pam i686 257.2-17.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 MiB systemd-rpm-macros noarch 257.2-17.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 10.7 KiB util-linux-core i686 2.40.4-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 MiB xxhash-libs i686 0.8.3-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 113.5 KiB xz-libs i686 1:5.6.3-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 229.6 KiB zig-srpm-macros noarch 1-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip i686 3.0-43.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 694.3 KiB zlib-ng-compat i686 2.2.3-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 156.9 KiB zstd i686 1.5.6-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB Installing groups: build Transaction Summary: Installing: 163 packages Total size of inbound packages is 61 MiB. Need to download 61 MiB. After this operation, 195 MiB extra will be used (install 195 MiB, remove 0 B). [ 1/163] bzip2-0:1.0.8-20.fc42.i686 100% | 2.3 MiB/s | 52.7 KiB | 00m00s [ 2/163] cpio-0:2.15-2.fc41.i686 100% | 40.6 MiB/s | 290.8 KiB | 00m00s [ 3/163] diffutils-0:3.10-9.fc42.i686 100% | 65.4 MiB/s | 401.9 KiB | 00m00s [ 4/163] bash-0:5.2.37-1.fc42.i686 100% | 46.4 MiB/s | 1.8 MiB | 00m00s [ 5/163] fedora-release-0:42-0.16.noar 100% | 2.6 MiB/s | 13.4 KiB | 00m00s [ 6/163] findutils-1:4.10.0-5.fc42.i68 100% | 77.0 MiB/s | 551.9 KiB | 00m00s [ 7/163] glibc-minimal-langpack-0:2.40 100% | 25.0 MiB/s | 127.9 KiB | 00m00s [ 8/163] gawk-0:5.3.1-1.fc42.i686 100% | 80.9 MiB/s | 1.1 MiB | 00m00s [ 9/163] grep-0:3.11-10.fc42.i686 100% | 57.6 MiB/s | 294.7 KiB | 00m00s [ 10/163] gzip-0:1.13-3.fc42.i686 100% | 39.7 MiB/s | 162.6 KiB | 00m00s [ 11/163] coreutils-0:9.6-1.fc42.i686 100% | 18.8 MiB/s | 1.2 MiB | 00m00s [ 12/163] info-0:7.2-3.fc42.i686 100% | 36.5 MiB/s | 186.7 KiB | 00m00s [ 13/163] patch-0:2.7.6-26.fc42.i686 100% | 27.9 MiB/s | 142.9 KiB | 00m00s [ 14/163] redhat-rpm-config-0:342-1.fc4 100% | 18.3 MiB/s | 74.9 KiB | 00m00s [ 15/163] rpm-build-0:4.20.0-8.fc42.i68 100% | 10.5 MiB/s | 75.2 KiB | 00m00s [ 16/163] sed-0:4.9-4.fc42.i686 100% | 50.6 MiB/s | 310.6 KiB | 00m00s [ 17/163] unzip-0:6.0-66.fc42.i686 100% | 35.4 MiB/s | 181.4 KiB | 00m00s [ 18/163] tar-2:1.35-5.fc42.i686 100% | 94.1 MiB/s | 866.8 KiB | 00m00s [ 19/163] which-0:2.22-2.fc42.i686 100% | 10.2 MiB/s | 41.6 KiB | 00m00s [ 20/163] util-linux-0:2.40.4-2.fc42.i6 100% | 128.0 MiB/s | 1.2 MiB | 00m00s [ 21/163] shadow-utils-2:4.17.0-4.fc42. 100% | 54.5 MiB/s | 1.3 MiB | 00m00s [ 22/163] xz-1:5.6.3-3.fc42.i686 100% | 56.9 MiB/s | 466.2 KiB | 00m00s [ 23/163] fedora-release-common-0:42-0. 100% | 4.7 MiB/s | 24.3 KiB | 00m00s [ 24/163] coreutils-common-0:9.6-1.fc42 100% | 130.9 MiB/s | 2.1 MiB | 00m00s [ 25/163] filesystem-0:3.18-36.fc42.i68 100% | 65.7 MiB/s | 1.3 MiB | 00m00s [ 26/163] glibc-common-0:2.40.9000-35.f 100% | 45.6 MiB/s | 420.6 KiB | 00m00s [ 27/163] glibc-0:2.40.9000-35.fc42.i68 100% | 128.9 MiB/s | 2.1 MiB | 00m00s [ 28/163] filesystem-srpm-macros-0:3.18 100% | 5.0 MiB/s | 25.6 KiB | 00m00s [ 29/163] rpm-0:4.20.0-8.fc42.i686 100% | 62.8 MiB/s | 514.8 KiB | 00m00s [ 30/163] libblkid-0:2.40.4-2.fc42.i686 100% | 27.1 MiB/s | 138.7 KiB | 00m00s [ 31/163] libfdisk-0:2.40.4-2.fc42.i686 100% | 35.3 MiB/s | 180.5 KiB | 00m00s [ 32/163] libmount-0:2.40.4-2.fc42.i686 100% | 40.4 MiB/s | 165.6 KiB | 00m00s [ 33/163] libsmartcols-0:2.40.4-2.fc42. 100% | 21.5 MiB/s | 88.0 KiB | 00m00s [ 34/163] libuuid-0:2.40.4-2.fc42.i686 100% | 7.5 MiB/s | 30.6 KiB | 00m00s [ 35/163] fedora-repos-0:42-0.4.noarch 100% | 3.0 MiB/s | 9.3 KiB | 00m00s [ 36/163] xz-libs-1:5.6.3-3.fc42.i686 100% | 24.1 MiB/s | 123.4 KiB | 00m00s [ 37/163] util-linux-core-0:2.40.4-2.fc 100% | 86.8 MiB/s | 533.4 KiB | 00m00s [ 38/163] fedora-repos-rawhide-0:42-0.4 100% | 2.2 MiB/s | 8.9 KiB | 00m00s [ 39/163] fedora-gpg-keys-0:42-0.4.noar 100% | 15.3 MiB/s | 125.2 KiB | 00m00s [ 40/163] glibc-gconv-extra-0:2.40.9000 100% | 126.4 MiB/s | 1.6 MiB | 00m00s [ 41/163] rpm-libs-0:4.20.0-8.fc42.i686 100% | 41.9 MiB/s | 343.2 KiB | 00m00s [ 42/163] rpm-build-libs-0:4.20.0-8.fc4 100% | 20.5 MiB/s | 104.8 KiB | 00m00s [ 43/163] libselinux-0:3.8-1.fc42.i686 100% | 24.9 MiB/s | 102.0 KiB | 00m00s [ 44/163] libxcrypt-0:4.4.38-4.fc42.i68 100% | 23.9 MiB/s | 122.3 KiB | 00m00s [ 45/163] libsepol-0:3.8-1.fc42.i686 100% | 50.1 MiB/s | 358.9 KiB | 00m00s [ 46/163] ncurses-libs-0:6.5-5.20250125 100% | 69.0 MiB/s | 353.0 KiB | 00m00s [ 47/163] ncurses-base-0:6.5-5.20250125 100% | 15.5 MiB/s | 63.5 KiB | 00m00s [ 48/163] audit-libs-0:4.0.3-2.fc42.i68 100% | 25.1 MiB/s | 128.3 KiB | 00m00s [ 49/163] systemd-libs-0:257.2-17.fc42. 100% | 105.4 MiB/s | 863.6 KiB | 00m00s [ 50/163] authselect-libs-0:1.5.0-9.fc4 100% | 33.4 MiB/s | 205.2 KiB | 00m00s [ 51/163] libcap-ng-0:0.8.5-4.fc42.i686 100% | 8.0 MiB/s | 32.9 KiB | 00m00s [ 52/163] authselect-0:1.5.0-9.fc42.i68 100% | 27.5 MiB/s | 141.0 KiB | 00m00s [ 53/163] libeconf-0:0.7.5-2.fc42.i686 100% | 9.0 MiB/s | 37.0 KiB | 00m00s [ 54/163] pam-0:1.7.0-4.fc42.i686 100% | 64.9 MiB/s | 531.6 KiB | 00m00s [ 55/163] pam-libs-0:1.7.0-4.fc42.i686 100% | 19.8 MiB/s | 60.8 KiB | 00m00s [ 56/163] zlib-ng-compat-0:2.2.3-2.fc42 100% | 20.9 MiB/s | 85.6 KiB | 00m00s [ 57/163] readline-0:8.2-12.fc42.i686 100% | 35.9 MiB/s | 220.4 KiB | 00m00s [ 58/163] bzip2-libs-0:1.0.8-20.fc42.i6 100% | 10.6 MiB/s | 43.4 KiB | 00m00s [ 59/163] libacl-0:2.3.2-3.fc42.i686 100% | 5.9 MiB/s | 24.3 KiB | 00m00s [ 60/163] libcap-0:2.73-2.fc42.i686 100% | 21.1 MiB/s | 86.6 KiB | 00m00s [ 61/163] libgcc-0:15.0.1-0.6.fc42.i686 100% | 25.6 MiB/s | 131.3 KiB | 00m00s [ 62/163] libsemanage-0:3.8-1.fc42.i686 100% | 25.9 MiB/s | 132.8 KiB | 00m00s [ 63/163] setup-0:2.15.0-10.fc42.noarch 100% | 24.4 MiB/s | 149.8 KiB | 00m00s [ 64/163] libzstd-0:1.5.6-3.fc42.i686 100% | 46.5 MiB/s | 285.5 KiB | 00m00s [ 65/163] lua-libs-0:5.4.7-2.fc42.i686 100% | 29.2 MiB/s | 149.6 KiB | 00m00s [ 66/163] popt-0:1.19-8.fc42.i686 100% | 15.0 MiB/s | 61.5 KiB | 00m00s [ 67/163] rpm-sequoia-0:1.7.0-4.fc42.i6 100% | 121.6 MiB/s | 995.9 KiB | 00m00s [ 68/163] elfutils-libelf-0:0.192-8.fc4 100% | 35.0 MiB/s | 214.8 KiB | 00m00s [ 69/163] sqlite-libs-0:3.47.2-2.fc42.i 100% | 83.8 MiB/s | 772.4 KiB | 00m00s [ 70/163] elfutils-libs-0:0.192-8.fc42. 100% | 58.5 MiB/s | 299.6 KiB | 00m00s [ 71/163] elfutils-debuginfod-client-0: 100% | 11.7 MiB/s | 47.8 KiB | 00m00s [ 72/163] elfutils-0:0.192-8.fc42.i686 100% | 80.2 MiB/s | 574.9 KiB | 00m00s [ 73/163] file-0:5.45-9.fc42.i686 100% | 7.9 MiB/s | 48.7 KiB | 00m00s [ 74/163] file-libs-0:5.45-9.fc42.i686 100% | 83.7 MiB/s | 771.2 KiB | 00m00s [ 75/163] libgomp-0:15.0.1-0.6.fc42.i68 100% | 42.7 MiB/s | 350.1 KiB | 00m00s [ 76/163] alternatives-0:1.31-3.fc42.i6 100% | 10.1 MiB/s | 41.4 KiB | 00m00s [ 77/163] jansson-0:2.14-2.fc42.i686 100% | 11.5 MiB/s | 47.1 KiB | 00m00s [ 78/163] debugedit-0:5.1-4.fc42.i686 100% | 16.1 MiB/s | 82.5 KiB | 00m00s [ 79/163] libarchive-0:3.7.7-2.fc42.i68 100% | 74.4 MiB/s | 457.0 KiB | 00m00s [ 80/163] pkgconf-pkg-config-0:2.3.0-2. 100% | 2.4 MiB/s | 9.9 KiB | 00m00s [ 81/163] pkgconf-0:2.3.0-2.fc42.i686 100% | 8.8 MiB/s | 45.1 KiB | 00m00s [ 82/163] pkgconf-m4-0:2.3.0-2.fc42.noa 100% | 3.5 MiB/s | 14.2 KiB | 00m00s [ 83/163] libpkgconf-0:2.3.0-2.fc42.i68 100% | 10.1 MiB/s | 41.5 KiB | 00m00s [ 84/163] binutils-0:2.43.50-12.fc42.i6 100% | 175.8 MiB/s | 6.0 MiB | 00m00s [ 85/163] zstd-0:1.5.6-3.fc42.i686 100% | 37.1 MiB/s | 455.8 KiB | 00m00s [ 86/163] curl-0:8.11.1-3.fc42.i686 100% | 27.8 MiB/s | 228.1 KiB | 00m00s [ 87/163] ansible-srpm-macros-0:1-17.1. 100% | 5.0 MiB/s | 20.3 KiB | 00m00s [ 88/163] build-reproducibility-srpm-ma 100% | 1.9 MiB/s | 11.6 KiB | 00m00s [ 89/163] add-determinism-0:0.5.0-2.fc4 100% | 117.0 MiB/s | 958.1 KiB | 00m00s [ 90/163] dwz-0:0.15-9.fc42.i686 100% | 19.5 MiB/s | 140.0 KiB | 00m00s [ 91/163] efi-srpm-macros-0:6-2.fc42.no 100% | 5.5 MiB/s | 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crypto-policies-0:20250124-1. 100% | 14.4 MiB/s | 73.6 KiB | 00m00s [119/163] openssl-libs-1:3.2.2-14.fc42. 100% | 154.5 MiB/s | 2.3 MiB | 00m00s [120/163] ca-certificates-0:2024.2.69_v 100% | 76.9 MiB/s | 945.0 KiB | 00m00s [121/163] libcom_err-0:1.47.2-3.fc42.i6 100% | 6.7 MiB/s | 27.3 KiB | 00m00s [122/163] krb5-libs-0:1.21.3-5.fc42.i68 100% | 87.5 MiB/s | 806.6 KiB | 00m00s [123/163] pcre2-0:10.44-1.fc42.2.i686 100% | 46.5 MiB/s | 237.9 KiB | 00m00s [124/163] pcre2-syntax-0:10.44-1.fc42.2 100% | 29.2 MiB/s | 149.8 KiB | 00m00s [125/163] cracklib-0:2.9.11-7.fc42.i686 100% | 16.1 MiB/s | 82.2 KiB | 00m00s [126/163] libxml2-0:2.12.9-2.fc42.i686 100% | 102.8 MiB/s | 736.9 KiB | 00m00s [127/163] lz4-libs-0:1.10.0-2.fc42.i686 100% | 19.3 MiB/s | 78.9 KiB | 00m00s [128/163] keyutils-libs-0:1.6.3-5.fc42. 100% | 7.8 MiB/s | 31.8 KiB | 00m00s [129/163] libverto-0:0.3.2-10.fc42.i686 100% | 6.9 MiB/s | 21.2 KiB | 00m00s [130/163] basesystem-0:11-22.fc42.noarc 100% | 1.8 MiB/s | 7.3 KiB | 00m00s [131/163] gmp-1:6.3.0-2.fc41.i686 100% | 50.7 MiB/s | 311.3 KiB | 00m00s [132/163] fedora-release-identity-basic 100% | 2.8 MiB/s | 14.2 KiB | 00m00s [133/163] elfutils-default-yama-scope-0 100% | 2.5 MiB/s | 12.6 KiB | 00m00s [134/163] mpfr-0:4.2.1-6.fc42.i686 100% | 47.1 MiB/s | 385.9 KiB | 00m00s [135/163] json-c-0:0.18-2.fc42.i686 100% | 11.8 MiB/s | 48.3 KiB | 00m00s [136/163] libffi-0:3.4.6-5.fc42.i686 100% | 9.3 MiB/s | 38.0 KiB | 00m00s [137/163] libstdc++-0:15.0.1-0.6.fc42.i 100% | 116.9 MiB/s | 957.9 KiB | 00m00s [138/163] p11-kit-0:0.25.5-5.fc42.i686 100% | 58.6 MiB/s | 480.4 KiB | 00m00s [139/163] p11-kit-trust-0:0.25.5-5.fc42 100% | 27.0 MiB/s | 138.1 KiB | 00m00s [140/163] systemd-rpm-macros-0:257.2-17 100% | 8.5 MiB/s | 34.9 KiB | 00m00s [141/163] systemd-pam-0:257.2-17.fc42.i 100% | 60.9 MiB/s | 436.5 KiB | 00m00s [142/163] libtasn1-0:4.19.0-11.fc42.i68 100% | 14.7 MiB/s | 75.3 KiB | 00m00s [143/163] dbus-1:1.16.0-3.fc42.i686 100% | 1.9 MiB/s | 7.7 KiB | 00m00s [144/163] libseccomp-0:2.5.5-2.fc41.i68 100% | 14.1 MiB/s | 72.1 KiB | 00m00s [145/163] dbus-broker-0:36-5.fc42.i686 100% | 35.4 MiB/s | 181.1 KiB | 00m00s [146/163] dbus-common-1:1.16.0-3.fc42.n 100% | 3.5 MiB/s | 14.5 KiB | 00m00s [147/163] expat-0:2.6.4-2.fc42.i686 100% | 23.2 MiB/s | 118.9 KiB | 00m00s [148/163] xxhash-libs-0:0.8.3-2.fc42.i6 100% | 11.5 MiB/s | 46.9 KiB | 00m00s [149/163] systemd-0:257.2-17.fc42.i686 100% | 158.9 MiB/s | 5.9 MiB | 00m00s [150/163] libnghttp2-0:1.64.0-3.fc42.i6 100% | 16.3 MiB/s | 83.5 KiB | 00m00s [151/163] libcurl-0:8.11.1-3.fc42.i686 100% | 32.7 MiB/s | 402.1 KiB | 00m00s [152/163] libssh-0:0.11.1-4.fc42.i686 100% | 49.0 MiB/s | 250.6 KiB | 00m00s [153/163] libssh-config-0:0.11.1-4.fc42 100% | 1.8 MiB/s | 9.0 KiB | 00m00s [154/163] gdb-minimal-0:15.2-7.fc42.i68 100% | 158.7 MiB/s | 4.8 MiB | 00m00s [155/163] libidn2-0:2.3.7-3.fc42.i686 100% | 13.8 MiB/s | 113.1 KiB | 00m00s [156/163] libbrotli-0:1.1.0-6.fc42.i686 100% | 37.2 MiB/s | 343.1 KiB | 00m00s [157/163] libpsl-0:0.21.5-5.fc42.i686 100% | 10.5 MiB/s | 64.6 KiB | 00m00s [158/163] openldap-0:2.6.9-3.fc42.i686 100% | 54.3 MiB/s | 278.2 KiB | 00m00s [159/163] libevent-0:2.1.12-15.fc42.i68 100% | 45.2 MiB/s | 277.8 KiB | 00m00s [160/163] cyrus-sasl-lib-0:2.1.28-30.fc 100% | 93.0 MiB/s | 857.3 KiB | 00m00s [161/163] libtool-ltdl-0:2.5.4-4.fc42.i 100% | 9.3 MiB/s | 38.0 KiB | 00m00s [162/163] publicsuffix-list-dafsa-0:202 100% | 14.4 MiB/s | 58.8 KiB | 00m00s [163/163] libunistring-0:1.1-9.fc42.i68 100% | 59.7 MiB/s | 550.5 KiB | 00m00s -------------------------------------------------------------------------------- [163/163] Total 100% | 142.2 MiB/s | 60.9 MiB | 00m00s Running transaction [ 1/165] Verify package files 100% | 881.0 B/s | 163.0 B | 00m00s [ 2/165] Prepare transaction 100% | 3.9 KiB/s | 163.0 B | 00m00s [ 3/165] Installing publicsuffix-list- 100% | 0.0 B/s | 69.2 KiB | 00m00s [ 4/165] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 5/165] Installing fedora-release-ide 100% | 0.0 B/s | 976.0 B | 00m00s [ 6/165] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 7/165] Installing fedora-gpg-keys-0: 100% | 56.9 MiB/s | 174.8 KiB | 00m00s [ 8/165] Installing fedora-repos-0:42- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 9/165] Installing fedora-release-com 100% | 23.6 MiB/s | 24.1 KiB | 00m00s [ 10/165] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 11/165] Installing setup-0:2.15.0-10. 100% | 64.5 MiB/s | 726.5 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 12/165] Installing filesystem-0:3.18- 100% | 3.0 MiB/s | 211.9 KiB | 00m00s [ 13/165] Installing basesystem-0:11-22 100% | 0.0 B/s | 124.0 B | 00m00s [ 14/165] Installing pcre2-syntax-0:10. 100% | 248.1 MiB/s | 254.1 KiB | 00m00s [ 15/165] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [ 16/165] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [ 17/165] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [ 18/165] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [ 19/165] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [ 20/165] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [ 21/165] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [ 22/165] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [ 23/165] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [ 24/165] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 25/165] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [ 26/165] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [ 27/165] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [ 28/165] Installing ncurses-base-0:6.5 100% | 86.0 MiB/s | 352.2 KiB | 00m00s [ 29/165] Installing coreutils-common-0 100% | 429.0 MiB/s | 11.2 MiB | 00m00s [ 30/165] Installing libgcc-0:15.0.1-0. 100% | 292.3 MiB/s | 299.3 KiB | 00m00s [ 31/165] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 32/165] Installing ncurses-libs-0:6.5 100% | 233.4 MiB/s | 955.9 KiB | 00m00s [ 33/165] Installing glibc-0:2.40.9000- 100% | 189.0 MiB/s | 5.5 MiB | 00m00s [ 34/165] Installing bash-0:5.2.37-1.fc 100% | 298.1 MiB/s | 8.3 MiB | 00m00s [ 35/165] Installing glibc-common-0:2.4 100% | 68.1 MiB/s | 1.0 MiB | 00m00s [ 36/165] Installing glibc-gconv-extra- 100% | 262.1 MiB/s | 6.8 MiB | 00m00s [ 37/165] Installing zlib-ng-compat-0:2 100% | 154.1 MiB/s | 157.8 KiB | 00m00s [ 38/165] Installing xz-libs-1:5.6.3-3. 100% | 225.3 MiB/s | 230.7 KiB | 00m00s [ 39/165] Installing bzip2-libs-0:1.0.8 100% | 0.0 B/s | 84.9 KiB | 00m00s [ 40/165] Installing libuuid-0:2.40.4-2 100% | 0.0 B/s | 37.5 KiB | 00m00s [ 41/165] Installing libblkid-0:2.40.4- 100% | 279.7 MiB/s | 286.4 KiB | 00m00s [ 42/165] Installing libxcrypt-0:4.4.38 100% | 275.4 MiB/s | 282.0 KiB | 00m00s [ 43/165] Installing readline-0:8.2-12. 100% | 448.6 MiB/s | 459.4 KiB | 00m00s [ 44/165] Installing popt-0:1.19-8.fc42 100% | 69.5 MiB/s | 142.4 KiB | 00m00s [ 45/165] Installing libzstd-0:1.5.6-3. 100% | 355.6 MiB/s | 728.2 KiB | 00m00s [ 46/165] Installing elfutils-libelf-0: 100% | 392.4 MiB/s | 1.2 MiB | 00m00s [ 47/165] Installing gmp-1:6.3.0-2.fc41 100% | 361.7 MiB/s | 740.7 KiB | 00m00s [ 48/165] Installing libstdc++-0:15.0.1 100% | 404.9 MiB/s | 2.8 MiB | 00m00s [ 49/165] Installing libcap-ng-0:0.8.5- 100% | 0.0 B/s | 73.2 KiB | 00m00s [ 50/165] Installing audit-libs-0:4.0.3 100% | 355.4 MiB/s | 363.9 KiB | 00m00s [ 51/165] Installing libeconf-0:0.7.5-2 100% | 0.0 B/s | 65.4 KiB | 00m00s [ 52/165] Installing pam-libs-0:1.7.0-4 100% | 127.6 MiB/s | 130.7 KiB | 00m00s [ 53/165] Installing libcap-0:2.73-2.fc 100% | 17.5 MiB/s | 196.7 KiB | 00m00s [ 54/165] Installing systemd-libs-0:257 100% | 371.9 MiB/s | 2.2 MiB | 00m00s [ 55/165] Installing libattr-0:2.5.2-5. 100% | 0.0 B/s | 27.3 KiB | 00m00s [ 56/165] Installing libacl-0:2.3.2-3.f 100% | 0.0 B/s | 38.4 KiB | 00m00s [ 57/165] Installing gdbm-libs-1:1.23-9 100% | 18.1 MiB/s | 130.1 KiB | 00m00s [ 58/165] Installing crypto-policies-0: 100% | 40.0 MiB/s | 163.7 KiB | 00m00s [ 59/165] Installing mpfr-0:4.2.1-6.fc4 100% | 315.1 MiB/s | 968.0 KiB | 00m00s [ 60/165] Installing gawk-0:5.3.1-1.fc4 100% | 105.6 MiB/s | 1.7 MiB | 00m00s [ 61/165] Installing dwz-0:0.15-9.fc42. 100% | 27.6 MiB/s | 310.3 KiB | 00m00s [ 62/165] Installing libfdisk-0:2.40.4- 100% | 410.9 MiB/s | 420.8 KiB | 00m00s [ 63/165] Installing unzip-0:6.0-66.fc4 100% | 34.7 MiB/s | 391.2 KiB | 00m00s [ 64/165] Installing file-libs-0:5.45-9 100% | 710.6 MiB/s | 9.9 MiB | 00m00s [ 65/165] Installing file-0:5.45-9.fc42 100% | 9.7 MiB/s | 99.8 KiB | 00m00s [ 66/165] Installing libsmartcols-0:2.4 100% | 180.4 MiB/s | 184.7 KiB | 00m00s [ 67/165] Installing libsepol-0:3.8-1.f 100% | 428.9 MiB/s | 878.3 KiB | 00m00s [ 68/165] Installing lua-libs-0:5.4.7-2 100% | 302.3 MiB/s | 309.6 KiB | 00m00s [ 69/165] Installing alternatives-0:1.3 100% | 6.5 MiB/s | 66.9 KiB | 00m00s [ 70/165] Installing libcom_err-0:1.47. 100% | 0.0 B/s | 63.4 KiB | 00m00s [ 71/165] Installing pcre2-0:10.44-1.fc 100% | 313.1 MiB/s | 641.1 KiB | 00m00s [ 72/165] Installing libselinux-0:3.8-1 100% | 208.6 MiB/s | 213.6 KiB | 00m00s [ 73/165] Installing grep-0:3.11-10.fc4 100% | 72.2 MiB/s | 1.0 MiB | 00m00s [ 74/165] Installing sed-0:4.9-4.fc42.i 100% | 65.3 MiB/s | 868.6 KiB | 00m00s [ 75/165] Installing findutils-1:4.10.0 100% | 125.6 MiB/s | 1.9 MiB | 00m00s [ 76/165] Installing libmount-0:2.40.4- 100% | 189.7 MiB/s | 388.4 KiB | 00m00s [ 77/165] Installing util-linux-core-0: 100% | 89.4 MiB/s | 1.3 MiB | 00m00s [ 78/165] Installing xz-1:5.6.3-3.fc42. 100% | 88.2 MiB/s | 1.2 MiB | 00m00s [ 79/165] Installing lz4-libs-0:1.10.0- 100% | 154.0 MiB/s | 157.7 KiB | 00m00s [ 80/165] Installing libffi-0:3.4.6-5.f 100% | 0.0 B/s | 78.8 KiB | 00m00s [ 81/165] Installing libtasn1-0:4.19.0- 100% | 172.5 MiB/s | 176.6 KiB | 00m00s [ 82/165] Installing p11-kit-0:0.25.5-5 100% | 137.2 MiB/s | 2.3 MiB | 00m00s [ 83/165] Installing libunistring-0:1.1 100% | 432.5 MiB/s | 1.7 MiB | 00m00s [ 84/165] Installing filesystem-srpm-ma 100% | 0.0 B/s | 38.9 KiB | 00m00s [ 85/165] Installing elfutils-default-y 100% | 340.5 KiB/s | 2.0 KiB | 00m00s [ 86/165] Installing dbus-common-1:1.16 100% | 2.6 MiB/s | 13.6 KiB | 00m00s [ 87/165] Installing elfutils-libs-0:0. 100% | 355.1 MiB/s | 727.3 KiB | 00m00s [ 88/165] Installing libidn2-0:2.3.7-3. 100% | 163.2 MiB/s | 334.2 KiB | 00m00s [ 89/165] Installing libpsl-0:0.21.5-5. 100% | 0.0 B/s | 76.8 KiB | 00m00s [ 90/165] Installing p11-kit-trust-0:0. 100% | 18.5 MiB/s | 359.3 KiB | 00m00s [ 91/165] Installing openssl-libs-1:3.2 100% | 348.9 MiB/s | 6.3 MiB | 00m00s [ 92/165] Installing coreutils-0:9.6-1. 100% | 170.9 MiB/s | 5.5 MiB | 00m00s [ 93/165] Installing ca-certificates-0: 100% | 1.7 MiB/s | 2.4 MiB | 00m01s [ 94/165] Installing gzip-0:1.13-3.fc42 100% | 29.6 MiB/s | 393.4 KiB | 00m00s [ 95/165] Installing authselect-libs-0: 100% | 204.6 MiB/s | 838.1 KiB | 00m00s [ 96/165] Installing cracklib-0:2.9.11- 100% | 18.5 MiB/s | 246.4 KiB | 00m00s [ 97/165] Installing libpwquality-0:1.4 100% | 31.1 MiB/s | 414.3 KiB | 00m00s [ 98/165] Installing rpm-sequoia-0:1.7. 100% | 375.5 MiB/s | 2.6 MiB | 00m00s [ 99/165] Installing libevent-0:2.1.12- 100% | 313.5 MiB/s | 963.0 KiB | 00m00s [100/165] Installing zstd-0:1.5.6-3.fc4 100% | 111.4 MiB/s | 1.6 MiB | 00m00s [101/165] Installing tar-2:1.35-5.fc42. 100% | 166.6 MiB/s | 3.0 MiB | 00m00s [102/165] Installing libsemanage-0:3.8- 100% | 157.1 MiB/s | 321.7 KiB | 00m00s [103/165] Installing shadow-utils-2:4.1 100% | 153.1 MiB/s | 4.0 MiB | 00m00s [104/165] Installing zip-0:3.0-43.fc42. 100% | 56.8 MiB/s | 698.2 KiB | 00m00s [105/165] Installing gdbm-1:1.23-9.fc42 100% | 36.6 MiB/s | 450.1 KiB | 00m00s [106/165] Installing cyrus-sasl-lib-0:2 100% | 154.4 MiB/s | 2.5 MiB | 00m00s [107/165] Installing bzip2-0:1.0.8-20.f 100% | 8.4 MiB/s | 94.1 KiB | 00m00s [108/165] Installing libxml2-0:2.12.9-2 100% | 120.7 MiB/s | 1.8 MiB | 00m00s [109/165] Installing libarchive-0:3.7.7 100% | 328.2 MiB/s | 1.0 MiB | 00m00s [110/165] Installing sqlite-libs-0:3.47 100% | 390.7 MiB/s | 1.6 MiB | 00m00s [111/165] Installing add-determinism-0: 100% | 156.6 MiB/s | 2.3 MiB | 00m00s [112/165] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [113/165] Installing ed-0:1.21-2.fc42.i 100% | 13.1 MiB/s | 147.6 KiB | 00m00s [114/165] Installing patch-0:2.7.6-26.f 100% | 26.9 MiB/s | 303.3 KiB | 00m00s [115/165] Installing cpio-0:2.15-2.fc41 100% | 79.0 MiB/s | 1.1 MiB | 00m00s [116/165] Installing diffutils-0:3.10-9 100% | 106.3 MiB/s | 1.6 MiB | 00m00s [117/165] Installing libgomp-0:15.0.1-0 100% | 523.6 MiB/s | 536.2 KiB | 00m00s [118/165] Installing jansson-0:2.14-2.f 100% | 91.4 MiB/s | 93.6 KiB | 00m00s [119/165] Installing libpkgconf-0:2.3.0 100% | 0.0 B/s | 77.7 KiB | 00m00s [120/165] Installing pkgconf-0:2.3.0-2. 100% | 7.6 MiB/s | 85.4 KiB | 00m00s [121/165] Installing pkgconf-pkg-config 100% | 176.6 KiB/s | 1.8 KiB | 00m00s [122/165] Installing keyutils-libs-0:1. 100% | 0.0 B/s | 58.9 KiB | 00m00s [123/165] Installing libverto-0:0.3.2-1 100% | 0.0 B/s | 26.5 KiB | 00m00s [124/165] Installing krb5-libs-0:1.21.3 100% | 331.5 MiB/s | 2.3 MiB | 00m00s [125/165] Installing libtirpc-0:1.3.6-1 100% | 210.8 MiB/s | 215.8 KiB | 00m00s [126/165] Installing libnsl2-0:2.0.1-3. 100% | 56.8 MiB/s | 58.2 KiB | 00m00s [127/165] Installing pam-0:1.7.0-4.fc42 100% | 77.1 MiB/s | 1.6 MiB | 00m00s [128/165] Installing util-linux-0:2.40. 100% | 104.8 MiB/s | 3.2 MiB | 00m00s [129/165] Installing libssh-0:0.11.1-4. 100% | 297.6 MiB/s | 609.5 KiB | 00m00s [130/165] Installing json-c-0:0.18-2.fc 100% | 0.0 B/s | 91.2 KiB | 00m00s [131/165] Installing libseccomp-0:2.5.5 100% | 170.4 MiB/s | 174.5 KiB | 00m00s [132/165] Installing expat-0:2.6.4-2.fc 100% | 12.6 MiB/s | 297.3 KiB | 00m00s [133/165] Installing dbus-broker-0:36-5 100% | 21.7 MiB/s | 400.1 KiB | 00m00s [134/165] Installing dbus-1:1.16.0-3.fc 100% | 0.0 B/s | 124.0 B | 00m00s [135/165] Installing systemd-pam-0:257. 100% | 224.6 MiB/s | 1.1 MiB | 00m00s [136/165] Installing systemd-0:257.2-17 100% | 112.6 MiB/s | 16.9 MiB | 00m00s >>> Running post-install scriptlet: systemd-0:257.2-17.fc42.i686 >>> Finished post-install scriptlet: systemd-0:257.2-17.fc42.i686 >>> Scriptlet output: >>> Creating group 'systemd-journal' with GID 190. >>> Creating group 'systemd-oom' with GID 999. >>> Creating user 'systemd-oom' (systemd Userspace OOM Killer) with UID 999 and >>> [137/165] Installing rpm-libs-0:4.20.0- 100% | 248.1 MiB/s | 762.2 KiB | 00m00s [138/165] Installing rpm-build-libs-0:4 100% | 201.3 MiB/s | 206.1 KiB | 00m00s [139/165] Installing xxhash-libs-0:0.8. 100% | 112.2 MiB/s | 114.9 KiB | 00m00s [140/165] Installing libnghttp2-0:1.64. 100% | 170.7 MiB/s | 174.8 KiB | 00m00s [141/165] Installing libbrotli-0:1.1.0- 100% | 281.7 MiB/s | 865.4 KiB | 00m00s [142/165] Installing libtool-ltdl-0:2.5 100% | 68.8 MiB/s | 70.5 KiB | 00m00s [143/165] Installing systemd-rpm-macros 100% | 0.0 B/s | 11.3 KiB | 00m00s [144/165] Installing openldap-0:2.6.9-3 100% | 220.1 MiB/s | 676.1 KiB | 00m00s [145/165] Installing libcurl-0:8.11.1-3 100% | 284.9 MiB/s | 875.2 KiB | 00m00s [146/165] Installing elfutils-debuginfo 100% | 6.9 MiB/s | 84.5 KiB | 00m00s [147/165] Installing elfutils-0:0.192-8 100% | 147.5 MiB/s | 2.7 MiB | 00m00s [148/165] Installing binutils-0:2.43.50 100% | 332.9 MiB/s | 26.0 MiB | 00m00s [149/165] Installing gdb-minimal-0:15.2 100% | 302.5 MiB/s | 13.6 MiB | 00m00s [150/165] Installing debugedit-0:5.1-4. 100% | 17.3 MiB/s | 212.7 KiB | 00m00s [151/165] Installing curl-0:8.11.1-3.fc 100% | 22.5 MiB/s | 460.3 KiB | 00m00s [152/165] Installing rpm-0:4.20.0-8.fc4 100% | 102.6 MiB/s | 2.5 MiB | 00m00s [153/165] Installing efi-srpm-macros-0: 100% | 0.0 B/s | 41.1 KiB | 00m00s [154/165] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [155/165] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [156/165] Installing fonts-srpm-macros- 100% | 0.0 B/s | 57.0 KiB | 00m00s [157/165] Installing forge-srpm-macros- 100% | 0.0 B/s | 40.3 KiB | 00m00s [158/165] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 62.0 KiB | 00m00s [159/165] Installing python-srpm-macros 100% | 0.0 B/s | 52.2 KiB | 00m00s [160/165] Installing redhat-rpm-config- 100% | 94.5 MiB/s | 193.5 KiB | 00m00s [161/165] Installing rpm-build-0:4.20.0 100% | 12.8 MiB/s | 157.7 KiB | 00m00s [162/165] Installing pyproject-srpm-mac 100% | 0.0 B/s | 2.5 KiB | 00m00s [163/165] Installing authselect-0:1.5.0 100% | 13.3 MiB/s | 163.5 KiB | 00m00s [164/165] Installing which-0:2.22-2.fc4 100% | 7.1 MiB/s | 80.0 KiB | 00m00s [165/165] Installing info-0:7.2-3.fc42. 100% | 195.4 KiB/s | 360.8 KiB | 00m02s Warning: skipped OpenPGP checks for 163 packages from repository: http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.5.0-2.fc42.i686 alternatives-1.31-3.fc42.i686 ansible-srpm-macros-1-17.1.fc42.noarch audit-libs-4.0.3-2.fc42.i686 authselect-1.5.0-9.fc42.i686 authselect-libs-1.5.0-9.fc42.i686 basesystem-11-22.fc42.noarch bash-5.2.37-1.fc42.i686 binutils-2.43.50-12.fc42.i686 build-reproducibility-srpm-macros-0.5.0-2.fc42.noarch bzip2-1.0.8-20.fc42.i686 bzip2-libs-1.0.8-20.fc42.i686 ca-certificates-2024.2.69_v8.0.401-5.fc42.noarch coreutils-9.6-1.fc42.i686 coreutils-common-9.6-1.fc42.i686 cpio-2.15-2.fc41.i686 cracklib-2.9.11-7.fc42.i686 crypto-policies-20250124-1.git4d262e7.fc42.noarch curl-8.11.1-3.fc42.i686 cyrus-sasl-lib-2.1.28-30.fc42.i686 dbus-1.16.0-3.fc42.i686 dbus-broker-36-5.fc42.i686 dbus-common-1.16.0-3.fc42.noarch debugedit-5.1-4.fc42.i686 diffutils-3.10-9.fc42.i686 dwz-0.15-9.fc42.i686 ed-1.21-2.fc42.i686 efi-srpm-macros-6-2.fc42.noarch elfutils-0.192-8.fc42.i686 elfutils-debuginfod-client-0.192-8.fc42.i686 elfutils-default-yama-scope-0.192-8.fc42.noarch elfutils-libelf-0.192-8.fc42.i686 elfutils-libs-0.192-8.fc42.i686 expat-2.6.4-2.fc42.i686 fedora-gpg-keys-42-0.4.noarch fedora-release-42-0.16.noarch fedora-release-common-42-0.16.noarch fedora-release-identity-basic-42-0.16.noarch fedora-repos-42-0.4.noarch fedora-repos-rawhide-42-0.4.noarch file-5.45-9.fc42.i686 file-libs-5.45-9.fc42.i686 filesystem-3.18-36.fc42.i686 filesystem-srpm-macros-3.18-36.fc42.noarch findutils-4.10.0-5.fc42.i686 fonts-srpm-macros-2.0.5-21.fc42.noarch forge-srpm-macros-0.4.0-2.fc42.noarch fpc-srpm-macros-1.3-14.fc42.noarch gawk-5.3.1-1.fc42.i686 gdb-minimal-15.2-7.fc42.i686 gdbm-1.23-9.fc42.i686 gdbm-libs-1.23-9.fc42.i686 ghc-srpm-macros-1.9.2-2.fc42.noarch glibc-2.40.9000-35.fc42.i686 glibc-common-2.40.9000-35.fc42.i686 glibc-gconv-extra-2.40.9000-35.fc42.i686 glibc-minimal-langpack-2.40.9000-35.fc42.i686 gmp-6.3.0-2.fc41.i686 gnat-srpm-macros-6-7.fc42.noarch go-srpm-macros-3.6.0-6.fc42.noarch grep-3.11-10.fc42.i686 gzip-1.13-3.fc42.i686 info-7.2-3.fc42.i686 jansson-2.14-2.fc42.i686 json-c-0.18-2.fc42.i686 kernel-srpm-macros-1.0-25.fc42.noarch keyutils-libs-1.6.3-5.fc42.i686 krb5-libs-1.21.3-5.fc42.i686 libacl-2.3.2-3.fc42.i686 libarchive-3.7.7-2.fc42.i686 libattr-2.5.2-5.fc42.i686 libblkid-2.40.4-2.fc42.i686 libbrotli-1.1.0-6.fc42.i686 libcap-2.73-2.fc42.i686 libcap-ng-0.8.5-4.fc42.i686 libcom_err-1.47.2-3.fc42.i686 libcurl-8.11.1-3.fc42.i686 libeconf-0.7.5-2.fc42.i686 libevent-2.1.12-15.fc42.i686 libfdisk-2.40.4-2.fc42.i686 libffi-3.4.6-5.fc42.i686 libgcc-15.0.1-0.6.fc42.i686 libgomp-15.0.1-0.6.fc42.i686 libidn2-2.3.7-3.fc42.i686 libmount-2.40.4-2.fc42.i686 libnghttp2-1.64.0-3.fc42.i686 libnsl2-2.0.1-3.fc42.i686 libpkgconf-2.3.0-2.fc42.i686 libpsl-0.21.5-5.fc42.i686 libpwquality-1.4.5-12.fc42.i686 libseccomp-2.5.5-2.fc41.i686 libselinux-3.8-1.fc42.i686 libsemanage-3.8-1.fc42.i686 libsepol-3.8-1.fc42.i686 libsmartcols-2.40.4-2.fc42.i686 libssh-0.11.1-4.fc42.i686 libssh-config-0.11.1-4.fc42.noarch libstdc++-15.0.1-0.6.fc42.i686 libtasn1-4.19.0-11.fc42.i686 libtirpc-1.3.6-1.rc3.fc42.2.i686 libtool-ltdl-2.5.4-4.fc42.i686 libunistring-1.1-9.fc42.i686 libuuid-2.40.4-2.fc42.i686 libverto-0.3.2-10.fc42.i686 libxcrypt-4.4.38-4.fc42.i686 libxml2-2.12.9-2.fc42.i686 libzstd-1.5.6-3.fc42.i686 lua-libs-5.4.7-2.fc42.i686 lua-srpm-macros-1-15.fc42.noarch lz4-libs-1.10.0-2.fc42.i686 mpfr-4.2.1-6.fc42.i686 ncurses-base-6.5-5.20250125.fc42.noarch ncurses-libs-6.5-5.20250125.fc42.i686 ocaml-srpm-macros-10-4.fc42.noarch openblas-srpm-macros-2-19.fc42.noarch openldap-2.6.9-3.fc42.i686 openssl-libs-3.2.2-14.fc42.i686 p11-kit-0.25.5-5.fc42.i686 p11-kit-trust-0.25.5-5.fc42.i686 package-notes-srpm-macros-0.5-13.fc42.noarch pam-1.7.0-4.fc42.i686 pam-libs-1.7.0-4.fc42.i686 patch-2.7.6-26.fc42.i686 pcre2-10.44-1.fc42.2.i686 pcre2-syntax-10.44-1.fc42.2.noarch perl-srpm-macros-1-57.fc42.noarch pkgconf-2.3.0-2.fc42.i686 pkgconf-m4-2.3.0-2.fc42.noarch pkgconf-pkg-config-2.3.0-2.fc42.i686 popt-1.19-8.fc42.i686 publicsuffix-list-dafsa-20250116-1.fc42.noarch pyproject-srpm-macros-1.16.4-2.fc42.noarch python-srpm-macros-3.13-4.fc42.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.8.1-5.fc42.noarch readline-8.2-12.fc42.i686 redhat-rpm-config-342-1.fc42.noarch rpm-4.20.0-8.fc42.i686 rpm-build-4.20.0-8.fc42.i686 rpm-build-libs-4.20.0-8.fc42.i686 rpm-libs-4.20.0-8.fc42.i686 rpm-sequoia-1.7.0-4.fc42.i686 rust-srpm-macros-26.3-4.fc42.noarch sed-4.9-4.fc42.i686 setup-2.15.0-10.fc42.noarch shadow-utils-4.17.0-4.fc42.i686 sqlite-libs-3.47.2-2.fc42.i686 systemd-257.2-17.fc42.i686 systemd-libs-257.2-17.fc42.i686 systemd-pam-257.2-17.fc42.i686 systemd-rpm-macros-257.2-17.fc42.noarch tar-1.35-5.fc42.i686 unzip-6.0-66.fc42.i686 util-linux-2.40.4-2.fc42.i686 util-linux-core-2.40.4-2.fc42.i686 which-2.22-2.fc42.i686 xxhash-libs-0.8.3-2.fc42.i686 xz-5.6.3-3.fc42.i686 xz-libs-5.6.3-3.fc42.i686 zig-srpm-macros-1-4.fc42.noarch zip-3.0-43.fc42.i686 zlib-ng-compat-2.2.3-2.fc42.i686 zstd-1.5.6-3.fc42.i686 Start: buildsrpm Start: rpmbuild -bs Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1738454400 Wrote: /builddir/build/SRPMS/mmseq-1.0.11-23.fc42.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-i686-1738534848.203216/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-0iqu19le/mmseq/mmseq.spec) Config(child) 0 minutes 17 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-23.fc42.src.rpm) Config(fedora-41-i686) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-i686-bootstrap-1738534848.203216/root. INFO: reusing tmpfs at /var/lib/mock/fedora-41-i686-bootstrap-1738534848.203216/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-i686-1738534848.203216/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc41.x86_64 rpm-sequoia-1.7.0-3.fc41.x86_64 dnf5-5.2.8.1-3.fc41.x86_64 dnf5-plugins-5.2.8.1-3.fc41.x86_64 Finish: chroot init Start: build phase for mmseq-1.0.11-23.fc42.src.rpm Start: build setup for mmseq-1.0.11-23.fc42.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1738454400 Wrote: /builddir/build/SRPMS/mmseq-1.0.11-23.fc42.src.rpm Updating and loading repositories: local 100% | 194.2 KiB/s | 3.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 212.6 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 96.0 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 46.0 MiB/s | 2.7 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: armadillo-devel i686 12.8.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.3 MiB boost-devel i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 143.0 MiB flexiblas-devel i686 3.4.4-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.4 MiB gcc-c++ i686 15.0.1-0.6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 42.4 MiB gsl-devel i686 2.7.1-13.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB htslib-devel i686 1.15.1-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 411.0 KiB make i686 1:4.4.1-10.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB perl-generators noarch 1.16-7.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21.8 KiB zlib-ng-compat-devel i686 2.2.3-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 107.0 KiB Installing dependencies: SuperLU i686 7.0.0-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 516.6 KiB SuperLU-devel i686 7.0.0-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103.5 KiB annobin-docs noarch 12.87-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 98.6 KiB annobin-plugin-gcc i686 12.87-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 994.9 KiB armadillo i686 12.8.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 117.8 KiB arpack i686 3.9.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 330.6 KiB arpack-devel i686 3.9.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 24.1 KiB boost i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 KiB boost-atomic i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 16.0 KiB boost-chrono i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 32.7 KiB boost-container i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 64.6 KiB boost-context i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.7 KiB boost-contract i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 98.2 KiB boost-coroutine i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 16.2 KiB boost-date-time i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.5 KiB boost-fiber i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 73.9 KiB boost-filesystem i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 142.8 KiB boost-graph i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 349.5 KiB boost-iostreams i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 85.9 KiB boost-json i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 344.3 KiB boost-locale i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 620.8 KiB boost-log i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB boost-math i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 650.1 KiB boost-nowide i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 20.0 KiB boost-numpy3 i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 56.8 KiB boost-program-options i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 268.0 KiB boost-python3 i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 248.0 KiB boost-random i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 28.8 KiB boost-regex i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 266.5 KiB boost-serialization i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 448.0 KiB boost-stacktrace i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 53.5 KiB boost-system i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.5 KiB boost-test i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 625.2 KiB boost-thread i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 131.9 KiB boost-timer i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 20.2 KiB boost-type_erasure i686 1.83.0-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 53.3 KiB boost-wave i686 1.83.0-12.fc42 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 117.3 KiB perl-libnet noarch 3.15-513.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 289.4 KiB perl-libs i686 4:5.40.1-515.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 10.1 MiB perl-locale noarch 1.12-515.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.5 KiB perl-macros noarch 4:5.40.1-515.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.5 KiB perl-mro i686 1.29-515.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 36.8 KiB perl-overload noarch 1.37-515.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 71.5 KiB perl-overloading noarch 0.02-515.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 KiB perl-parent noarch 1:0.244-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 10.3 KiB perl-podlators noarch 1:6.0.2-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 317.5 KiB perl-vars noarch 1.05-515.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.9 KiB python-pip-wheel noarch 24.3.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB python3 i686 3.13.1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 26.7 KiB python3-libs i686 3.13.1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39.5 MiB python3-numpy i686 1:2.2.2-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.5 MiB python3-numpy-f2py i686 1:2.2.2-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 MiB tzdata noarch 2024b-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB Transaction Summary: Installing: 145 packages Total size of inbound packages is 159 MiB. Need to download 159 MiB. After this operation, 634 MiB extra will be used (install 634 MiB, remove 0 B). [ 1/145] flexiblas-devel-0:3.4.4-7.fc4 100% | 3.3 MiB/s | 107.7 KiB | 00m00s [ 2/145] boost-devel-0:1.83.0-12.fc42. 100% | 143.1 MiB/s | 11.7 MiB | 00m00s [ 3/145] gsl-devel-0:2.7.1-13.fc42.i68 100% | 74.4 MiB/s | 609.5 KiB | 00m00s [ 4/145] htslib-devel-0:1.15.1-8.fc42. 100% | 2.8 MiB/s | 99.0 KiB | 00m00s [ 5/145] make-1:4.4.1-10.fc42.i686 100% | 44.2 MiB/s | 587.9 KiB | 00m00s [ 6/145] armadillo-devel-0:12.8.1-6.fc 100% | 14.4 MiB/s | 2.0 MiB | 00m00s [ 7/145] perl-generators-0:1.16-7.fc42 100% | 2.0 MiB/s | 16.3 KiB | 00m00s [ 8/145] zlib-ng-compat-devel-0:2.2.3- 100% | 4.7 MiB/s | 38.4 KiB | 00m00s [ 9/145] gcc-c++-0:15.0.1-0.6.fc42.i68 100% | 112.1 MiB/s | 15.2 MiB | 00m00s [ 10/145] libstdc++-devel-0:15.0.1-0.6. 100% | 92.9 MiB/s | 2.7 MiB | 00m00s [ 11/145] gsl-0:2.7.1-13.fc42.i686 100% | 73.7 MiB/s | 1.2 MiB | 00m00s [ 12/145] htslib-0:1.15.1-8.fc42.i686 100% | 12.5 MiB/s | 536.0 KiB | 00m00s [ 13/145] libquadmath-devel-0:15.0.1-0. 100% | 4.3 MiB/s | 26.7 KiB | 00m00s [ 14/145] cpp-0:15.0.1-0.6.fc42.i686 100% | 222.2 MiB/s | 12.9 MiB | 00m00s [ 15/145] libquadmath-0:15.0.1-0.6.fc42 100% | 12.6 MiB/s | 232.2 KiB | 00m00s [ 16/145] cmake-filesystem-0:3.31.5-1.f 100% | 2.9 MiB/s | 17.7 KiB | 00m00s [ 17/145] perl-File-Basename-0:2.86-515 100% | 4.2 MiB/s | 17.2 KiB | 00m00s [ 18/145] perl-Fedora-VSP-0:0.001-36.fc 100% | 3.7 MiB/s | 22.9 KiB | 00m00s [ 19/145] perl-interpreter-4:5.40.1-515 100% | 11.7 MiB/s | 72.1 KiB | 00m00s [ 20/145] perl-macros-4:5.40.1-515.fc42 100% | 2.4 MiB/s | 12.3 KiB | 00m00s [ 21/145] perl-libs-4:5.40.1-515.fc42.i 100% | 130.9 MiB/s | 2.4 MiB | 00m00s [ 22/145] perl-Carp-0:1.54-512.fc42.noa 100% | 4.0 MiB/s | 28.9 KiB | 00m00s [ 23/145] gcc-0:15.0.1-0.6.fc42.i686 100% | 236.2 MiB/s | 38.7 MiB | 00m00s [ 24/145] perl-Exporter-0:5.78-512.fc42 100% | 860.8 KiB/s | 31.0 KiB | 00m00s [ 25/145] libmpc-0:1.3.1-7.fc42.i686 100% | 2.1 MiB/s | 77.0 KiB | 00m00s [ 26/145] libatomic-0:15.0.1-0.6.fc42.i 100% | 5.5 MiB/s | 22.5 KiB | 00m00s [ 27/145] glibc-devel-0:2.40.9000-35.fc 100% | 80.2 MiB/s | 574.8 KiB | 00m00s [ 28/145] libasan-0:15.0.1-0.6.fc42.i68 100% | 75.9 MiB/s | 543.9 KiB | 00m00s [ 29/145] libubsan-0:15.0.1-0.6.fc42.i6 100% | 46.6 MiB/s | 238.7 KiB | 00m00s [ 30/145] flexiblas-0:3.4.4-7.fc42.i686 100% | 5.0 MiB/s | 25.5 KiB | 00m00s [ 31/145] libicu-devel-0:76.1-4.fc42.i6 100% | 91.8 MiB/s | 752.1 KiB | 00m00s [ 32/145] flexiblas-netlib-0:3.4.4-7.fc 100% | 176.1 MiB/s | 3.2 MiB | 00m00s [ 33/145] boost-0:1.83.0-12.fc42.i686 100% | 1.8 MiB/s | 12.9 KiB | 00m00s [ 34/145] boost-numpy3-0:1.83.0-12.fc42 100% | 7.3 MiB/s | 29.9 KiB | 00m00s [ 35/145] boost-atomic-0:1.83.0-12.fc42 100% | 4.5 MiB/s | 18.3 KiB | 00m00s [ 36/145] boost-chrono-0:1.83.0-12.fc42 100% | 6.4 MiB/s | 26.3 KiB | 00m00s [ 37/145] boost-container-0:1.83.0-12.f 100% | 9.5 MiB/s | 38.9 KiB | 00m00s [ 38/145] boost-context-0:1.83.0-12.fc4 100% | 3.8 MiB/s | 15.7 KiB | 00m00s [ 39/145] boost-contract-0:1.83.0-12.fc 100% | 11.4 MiB/s | 46.6 KiB | 00m00s [ 40/145] boost-date-time-0:1.83.0-12.f 100% | 3.5 MiB/s | 14.4 KiB | 00m00s [ 41/145] boost-coroutine-0:1.83.0-12.f 100% | 3.8 MiB/s | 19.4 KiB | 00m00s [ 42/145] libicu-0:76.1-4.fc42.i686 100% | 237.6 MiB/s | 10.9 MiB | 00m00s [ 43/145] boost-fiber-0:1.83.0-12.fc42. 100% | 3.1 MiB/s | 44.9 KiB | 00m00s [ 44/145] boost-filesystem-0:1.83.0-12. 100% | 5.6 MiB/s | 74.0 KiB | 00m00s [ 45/145] boost-iostreams-0:1.83.0-12.f 100% | 10.4 MiB/s | 42.8 KiB | 00m00s [ 46/145] boost-graph-0:1.83.0-12.fc42. 100% | 31.7 MiB/s | 162.2 KiB | 00m00s [ 47/145] boost-json-0:1.83.0-12.fc42.i 100% | 31.7 MiB/s | 162.1 KiB | 00m00s [ 48/145] boost-locale-0:1.83.0-12.fc42 100% | 46.5 MiB/s | 237.9 KiB | 00m00s [ 49/145] boost-math-0:1.83.0-12.fc42.i 100% | 41.5 MiB/s | 212.3 KiB | 00m00s [ 50/145] boost-log-0:1.83.0-12.fc42.i6 100% | 88.0 MiB/s | 540.8 KiB | 00m00s [ 51/145] boost-nowide-0:1.83.0-12.fc42 100% | 4.8 MiB/s | 19.7 KiB | 00m00s [ 52/145] boost-program-options-0:1.83. 100% | 22.9 MiB/s | 117.3 KiB | 00m00s [ 53/145] boost-python3-0:1.83.0-12.fc4 100% | 25.5 MiB/s | 104.5 KiB | 00m00s [ 54/145] boost-random-0:1.83.0-12.fc42 100% | 3.3 MiB/s | 23.7 KiB | 00m00s [ 55/145] boost-regex-0:1.83.0-12.fc42. 100% | 19.2 MiB/s | 117.8 KiB | 00m00s [ 56/145] boost-serialization-0:1.83.0- 100% | 20.5 MiB/s | 147.1 KiB | 00m00s [ 57/145] boost-stacktrace-0:1.83.0-12. 100% | 4.9 MiB/s | 30.1 KiB | 00m00s [ 58/145] boost-system-0:1.83.0-12.fc42 100% | 4.7 MiB/s | 14.4 KiB | 00m00s [ 59/145] boost-test-0:1.83.0-12.fc42.i 100% | 50.0 MiB/s | 256.0 KiB | 00m00s [ 60/145] boost-timer-0:1.83.0-12.fc42. 100% | 5.2 MiB/s | 21.1 KiB | 00m00s [ 61/145] boost-thread-0:1.83.0-12.fc42 100% | 12.4 MiB/s | 63.3 KiB | 00m00s [ 62/145] boost-type_erasure-0:1.83.0-1 100% | 8.1 MiB/s | 33.4 KiB | 00m00s [ 63/145] boost-wave-0:1.83.0-12.fc42.i 100% | 49.0 MiB/s | 250.8 KiB | 00m00s [ 64/145] armadillo-0:12.8.1-6.fc42.i68 100% | 1.8 MiB/s | 31.7 KiB | 00m00s [ 65/145] SuperLU-0:7.0.0-2.fc42.i686 100% | 6.6 MiB/s | 201.8 KiB | 00m00s [ 66/145] SuperLU-devel-0:7.0.0-2.fc42. 100% | 765.5 KiB/s | 27.6 KiB | 00m00s [ 67/145] arpack-devel-0:3.9.1-6.fc42.i 100% | 977.7 KiB/s | 13.7 KiB | 00m00s [ 68/145] hdf5-devel-0:1.14.5-2.fc42.i6 100% | 99.9 MiB/s | 1.4 MiB | 00m00s [ 69/145] hdf5-0:1.14.5-2.fc42.i686 100% | 116.0 MiB/s | 2.1 MiB | 00m00s [ 70/145] libgfortran-0:15.0.1-0.6.fc42 100% | 51.5 MiB/s | 843.3 KiB | 00m00s [ 71/145] arpack-0:3.9.1-6.fc42.i686 100% | 10.8 MiB/s | 122.0 KiB | 00m00s [ 72/145] perl-DynaLoader-0:1.56-515.fc 100% | 4.2 MiB/s | 26.0 KiB | 00m00s [ 73/145] perl-Encode-4:3.21-512.fc42.i 100% | 86.3 MiB/s | 1.0 MiB | 00m00s [ 74/145] gcc-gfortran-0:15.0.1-0.6.fc4 100% | 228.0 MiB/s | 14.4 MiB | 00m00s [ 75/145] metis-0:5.1.0.3-7.fc42.i686 100% | 15.8 MiB/s | 581.6 KiB | 00m00s [ 76/145] perl-Errno-0:1.38-515.fc42.i6 100% | 2.9 MiB/s | 14.9 KiB | 00m00s [ 77/145] perl-PathTools-0:3.91-513.fc4 100% | 4.3 MiB/s | 83.5 KiB | 00m00s [ 78/145] perl-Scalar-List-Utils-5:1.68 100% | 12.5 MiB/s | 77.1 KiB | 00m00s [ 79/145] perl-constant-0:1.33-513.fc42 100% | 3.2 MiB/s | 23.0 KiB | 00m00s [ 80/145] perl-Getopt-Std-0:1.14-515.fc 100% | 3.1 MiB/s | 15.7 KiB | 00m00s [ 81/145] perl-Getopt-Long-1:2.58-3.fc4 100% | 8.9 MiB/s | 63.7 KiB | 00m00s [ 82/145] perl-overload-0:1.37-515.fc42 100% | 8.9 MiB/s | 45.5 KiB | 00m00s [ 83/145] perl-Storable-1:3.32-512.fc42 100% | 14.0 MiB/s | 100.6 KiB | 00m00s [ 84/145] perl-MIME-Base64-0:3.16-512.f 100% | 4.2 MiB/s | 30.1 KiB | 00m00s [ 85/145] perl-vars-0:1.05-515.fc42.noa 100% | 2.5 MiB/s | 13.0 KiB | 00m00s [ 86/145] perl-parent-1:0.244-2.fc42.no 100% | 2.5 MiB/s | 15.2 KiB | 00m00s [ 87/145] libaec-devel-0:1.1.3-2.fc42.i 100% | 2.0 MiB/s | 12.2 KiB | 00m00s [ 88/145] libxcrypt-devel-0:4.4.38-4.fc 100% | 7.1 MiB/s | 29.2 KiB | 00m00s [ 89/145] libaec-0:1.1.3-2.fc42.i686 100% | 6.4 MiB/s | 39.3 KiB | 00m00s [ 90/145] kernel-headers-0:6.13.0-62.fc 100% | 165.6 MiB/s | 1.5 MiB | 00m00s [ 91/145] flexiblas-openblas-openmp-0:3 100% | 4.2 MiB/s | 17.4 KiB | 00m00s [ 92/145] python3-0:3.13.1-3.fc42.i686 100% | 6.8 MiB/s | 27.8 KiB | 00m00s [ 93/145] python3-numpy-f2py-1:2.2.2-2. 100% | 54.8 MiB/s | 449.2 KiB | 00m00s [ 94/145] libb2-0:0.98.1-13.fc42.i686 100% | 4.6 MiB/s | 28.5 KiB | 00m00s [ 95/145] mpdecimal-0:2.5.1-17.fc42.i68 100% | 11.3 MiB/s | 92.4 KiB | 00m00s [ 96/145] python3-numpy-1:2.2.2-2.fc42. 100% | 229.1 MiB/s | 7.8 MiB | 00m00s [ 97/145] python-pip-wheel-0:24.3.1-2.f 100% | 92.6 MiB/s | 1.2 MiB | 00m00s [ 98/145] python3-libs-0:3.13.1-3.fc42. 100% | 190.7 MiB/s | 9.0 MiB | 00m00s [ 99/145] tzdata-0:2024b-2.fc42.noarch 100% | 34.9 MiB/s | 428.9 KiB | 00m00s [100/145] perl-mro-0:1.29-515.fc42.i686 100% | 2.5 MiB/s | 30.1 KiB | 00m00s [101/145] perl-overloading-0:0.02-515.f 100% | 2.5 MiB/s | 12.9 KiB | 00m00s [102/145] perl-Fcntl-0:1.18-515.fc42.i6 100% | 4.9 MiB/s | 29.8 KiB | 00m00s [103/145] perl-IO-0:1.55-515.fc42.i686 100% | 15.3 MiB/s | 78.5 KiB | 00m00s 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00m00s [117/145] perl-HTTP-Tiny-0:0.090-2.fc42 100% | 9.2 MiB/s | 56.5 KiB | 00m00s [118/145] perl-File-Temp-1:0.231.100-51 100% | 9.6 MiB/s | 59.2 KiB | 00m00s [119/145] perl-IPC-Open3-0:1.22-515.fc4 100% | 3.6 MiB/s | 21.8 KiB | 00m00s [120/145] perl-POSIX-0:2.20-515.fc42.i6 100% | 16.4 MiB/s | 100.6 KiB | 00m00s [121/145] perl-Pod-Simple-1:3.45-512.fc 100% | 22.7 MiB/s | 209.6 KiB | 00m00s [122/145] perl-IO-Socket-SSL-0:2.089-2. 100% | 32.1 MiB/s | 230.2 KiB | 00m00s [123/145] perl-Net-SSLeay-0:1.94-8.fc42 100% | 45.8 MiB/s | 375.5 KiB | 00m00s [124/145] perl-Time-Local-2:1.350-512.f 100% | 5.6 MiB/s | 34.5 KiB | 00m00s [125/145] perl-File-Path-0:2.18-512.fc4 100% | 5.7 MiB/s | 35.2 KiB | 00m00s [126/145] perl-Term-ANSIColor-0:5.01-51 100% | 7.8 MiB/s | 47.7 KiB | 00m00s [127/145] perl-Term-Cap-0:1.18-512.fc42 100% | 3.6 MiB/s | 22.2 KiB | 00m00s [128/145] perl-Pod-Escapes-1:1.07-512.f 100% | 3.2 MiB/s | 19.8 KiB | 00m00s [129/145] perl-Text-Tabs+Wrap-0:2024.00 100% | 3.5 MiB/s | 21.8 KiB | 00m00s [130/145] ncurses-0:6.5-5.20250125.fc42 100% | 51.5 MiB/s | 422.0 KiB | 00m00s [131/145] perl-if-0:0.61.000-515.fc42.n 100% | 2.7 MiB/s | 14.0 KiB | 00m00s [132/145] perl-locale-0:1.12-515.fc42.n 100% | 2.7 MiB/s | 13.6 KiB | 00m00s [133/145] perl-AutoLoader-0:5.74-515.fc 100% | 4.1 MiB/s | 21.2 KiB | 00m00s [134/145] perl-IO-Socket-IP-0:0.43-2.fc 100% | 6.9 MiB/s | 42.4 KiB | 00m00s [135/145] perl-URI-0:5.31-2.fc42.noarch 100% | 17.7 MiB/s | 127.1 KiB | 00m00s [136/145] perl-Data-Dumper-0:2.189-513. 100% | 8.0 MiB/s | 57.1 KiB | 00m00s [137/145] perl-MIME-Base32-0:1.303-23.f 100% | 2.9 MiB/s | 20.5 KiB | 00m00s [138/145] perl-B-0:1.89-515.fc42.i686 100% | 29.5 MiB/s | 181.0 KiB | 00m00s [139/145] perl-libnet-0:3.15-513.fc42.n 100% | 17.1 MiB/s | 122.9 KiB | 00m00s [140/145] perl-FileHandle-0:2.05-515.fc 100% | 3.0 MiB/s | 15.5 KiB | 00m00s [141/145] perl-Digest-MD5-0:2.59-6.fc42 100% | 5.9 MiB/s | 36.1 KiB | 00m00s [142/145] perl-Digest-0:1.20-512.fc42.n 100% | 4.1 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Finish: build setup for mmseq-1.0.11-23.fc42.src.rpm Start: rpmbuild mmseq-1.0.11-23.fc42.src.rpm Building target platforms: i686 Building for target i686 setting SOURCE_DATE_EPOCH=1738454400 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.pTg16C + umask 022 + cd /builddir/build/BUILD/mmseq-1.0.11-build + test -d /builddir/build/BUILD/mmseq-1.0.11-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/mmseq-1.0.11-build + /usr/bin/rm -rf /builddir/build/BUILD/mmseq-1.0.11-build + /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build + /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.ckjIGx + umask 022 + cd /builddir/build/BUILD/mmseq-1.0.11-build + cd /builddir/build/BUILD/mmseq-1.0.11-build + rm -rf mmseq-1.0.11 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/1.0.11.zip + STATUS=0 + '[' 0 -ne 0 ']' + cd mmseq-1.0.11 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #2 (mmseq-zlib.patch): + echo 'Patch #2 (mmseq-zlib.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .mmseq-zlib.patch --fuzz=0 patching file src/Makefile + rm -f bin/offsetGTF-linux bin/postdiff-linux + sed -e s/-lblas/-lflexiblas/g -e s/-llapack/-lflexiblas/g -i src/Makefile + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.y6i5yy + umask 022 + cd /builddir/build/BUILD/mmseq-1.0.11-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd mmseq-1.0.11 + cd src + make -j4 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection' g++ -O3 -c sokal.cc g++ -fopenmp -O3 -c uh.cpp g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 hitsio.cpp hitsio.hpp -c hitsio.cpp gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -c -o fasta.o fasta.c g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -O3 offsetGTF.cpp -o ../bin/offsetGTF offsetGTF.cpp: In function ‘int main(int, char**)’: offsetGTF.cpp:115:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 115 | while(gff_ind < gff_positions[chrom].size()) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ offsetGTF.cpp:117:57: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 117 | pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) { offsetGTF.cpp:114:11: warning: unused variable ‘curoff’ [-Wunused-variable] 114 | int curoff=offset; | ^~~~~~ offsetGTF.cpp:150:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 150 | while(gff_ind < gff_positions[prevchrom].size()) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ offsetGTF.cpp:163:53: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 163 | pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) { offsetGTF.cpp:177:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 177 | while(gff_ind < gff_positions[chrom].size() && gff_positions[chrom][gff_ind] <= pos) { | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ offsetGTF.cpp:235:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 235 | for(int i=5; i < tokens.size(); i++) { | ~~^~~~~~~~~~~~~~~ offsetGTF.cpp:237:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 237 | if(i < tokens.size()-1) { | ~~^~~~~~~~~~~~~~~~~ offsetGTF.cpp:108:7: warning: unused variable ‘gff_pos’ [-Wunused-variable] 108 | int gff_pos= -1; | ^~~~~~~ g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -O3 t2g_hits.cpp -o ../bin/t2g_hits t2g_hits.cpp: In function ‘int main(int, char**)’: t2g_hits.cpp:90:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 90 | for(int i=2; i < tokens.size(); i++) { | ~~^~~~~~~~~~~~~~~ t2g_hits.cpp:112:13: warning: ignoring return value of ‘_FIter std::unique(_FIter, _FIter) [with _FIter = __gnu_cxx::__normal_iterator<__cxx11::basic_string*, vector<__cxx11::basic_string > >]’, declared with attribute ‘nodiscard’ [-Wunused-result] 112 | unique(comb.begin(), comb.end()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from t2g_hits.cpp:27: /usr/include/c++/15/bits/stl_algo.h:875:5: note: declared here 875 | unique(_ForwardIterator __first, _ForwardIterator __last) | ^~~~~~ g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O2 bms.cpp bms.hpp -c bms.cpp hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’: hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 163 | for(int i = 0; i < transcriptName.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’: hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 184 | for(int i = 0; i < currentReadTranscripts.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’: hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 24 | if (VAL > numeric_limits::max()) { \ | ^ hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’ 191 | WRITE_UINT(ofs, hitsfileSchema); | ^~~~~~~~~~ hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 193 | for(int i = 0; i < transcriptName.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 24 | if (VAL > numeric_limits::max()) { \ hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’ 196 | WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ]) | ^~~~~~~~~~ hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’: hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 236 | for(int i = 0; i < currentReadTranscripts.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector >*, std::map, double>*, std::map, int>*, std::map, std::vector > >*, std::vector > >*)’: hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable] 356 | size_t nextStrLen; | ^~~~~~~~~~ hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’: hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type] 447 | } | ^ bms.cpp: In member function ‘arma::Col BMS::m2v(arma::Mat)’: bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 36 | for(int i=0; i < P.n_cols; i++) { | ~~^~~~~~~~~~ bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 37 | for(int j=0; j < P.n_rows; j++) { | ~~^~~~~~~~~~ bms.cpp: In member function ‘std::vector BMS::meanvar(arma::Col)’: bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 76 | for(int i=0;i < v.n_elem; i++) { | ~~^~~~~~~~~~ bms.cpp: In member function ‘void BMS::print(bool)’: bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 93 | for(int feature=0; feature < y->n_rows; feature++) { | ~~~~~~~~^~~~~~~~~~~ bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 97 | for(int i=0; i < M.n_cols; i++) { | ~~^~~~~~~~~~ bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 102 | for(int l=0; l < P[model].n_cols; l++) { | ~~^~~~~~~~~~~~~~~~~ bms.cpp: In member function ‘void BMS::printtune(int)’: bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 132 | for(int feature=0; feature < y->n_rows; feature++) { | ~~~~~~~~^~~~~~~~~~~ bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’: bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 185 | for(int j=0; j < y->n_rows; j++) { | ~~^~~~~~~~~~~ bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’: bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 253 | for(int j=0; j < y->n_rows; j++) { | ~~^~~~~~~~~~~ bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 255 | for(int b=0; b < M.n_cols; b++) { | ~~^~~~~~~~~~ bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’: bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 332 | for(int j=0; j < y->n_rows; j++) { | ~~^~~~~~~~~~~ bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 334 | for(int c=0; c < P[model].n_cols; c++) { | ~~^~~~~~~~~~~~~~~~~ bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’: bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 415 | for(int j=0; j < y->n_rows; j++) { | ~~^~~~~~~~~~~ bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’: bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 504 | for(int j=0; j < y->n_rows; j++) { | ~~^~~~~~~~~~~ bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 506 | for(int l=0; l < P[model].n_cols; l++) { | ~~^~~~~~~~~~~~~~~~~ bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’: bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 559 | for(int j=0; j < y->n_rows; j++) { | ~~^~~~~~~~~~~ bms.cpp: In member function ‘void BMS::copy_pseudo()’: bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 582 | for(int j=0; j < y->n_rows; j++) { | ~~^~~~~~~~~~~ bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 585 | for(int c=0; c < P[0].n_cols; c++) { | ~~^~~~~~~~~~~~~ bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’: bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 603 | for(int j=0; j < y->n_cols; j++) { | ~~^~~~~~~~~~~ bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 610 | for(int i=0; i < y->n_cols; i++) { | ~~^~~~~~~~~~~ bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’: bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 631 | for(int j=0; j < y->n_cols; j++) { | ~~^~~~~~~~~~~ bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 638 | for(int i=0; i < M.n_cols; i++) { | ~~^~~~~~~~~~ bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 646 | for(int i=0; i < M.n_cols; i++) { | ~~^~~~~~~~~~ bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 651 | for(int i=0; i < M.n_cols; i++) { | ~~^~~~~~~~~~ bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’: bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 663 | for(int l=0; l < P[model].n_cols; l++) { | ~~^~~~~~~~~~~~~~~~~ bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 666 | for(int i=0; i < y->n_cols; i++) { | ~~^~~~~~~~~~~ bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 673 | for(int i=0; i < y->n_cols; i++) { | ~~^~~~~~~~~~~ bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 681 | for(int l=0; l < P[model].n_cols; l++) { | ~~^~~~~~~~~~~~~~~~~ bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 686 | for(int l=0; l < P[model].n_cols; l++) { | ~~^~~~~~~~~~~~~~~~~ bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’: bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 699 | for(int l=0; l < P[model].n_cols; l++) { | ~~^~~~~~~~~~~~~~~~~ bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 704 | for(int l=0; l < P[model].n_cols; l++) { | ~~^~~~~~~~~~~~~~~~~ bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 711 | for(int l=0; l < P[model].n_cols; l++) { | ~~^~~~~~~~~~~~~~~~~ bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’: bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 729 | for(int i=0; i < y->n_cols; i++) { | ~~^~~~~~~~~~~ bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 740 | for(int i=0; i < y->n_cols; i++) { | ~~^~~~~~~~~~~ bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 751 | for(int i=0; i < y->n_cols; i++) { | ~~^~~~~~~~~~~ bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 763 | for(int i=0; i < y->n_cols; i++) { | ~~^~~~~~~~~~~ bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’: bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 877 | for(int i=0; i < y->n_cols; i++) { | ~~^~~~~~~~~~~ bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’: bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 931 | for(int i=0; i < y->n_cols; i++) { | ~~^~~~~~~~~~~ bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 940 | for(int j=0; j < M.n_cols; j++) { | ~~^~~~~~~~~~ bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 947 | for(int l=0; l < P[model].n_cols; l++) { | ~~^~~~~~~~~~~~~~~~~ bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’: bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 968 | for(int l=0; l < M.n_cols; l++) { | ~~^~~~~~~~~~ bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 974 | for(int l=0; l < P[model].n_cols; l++) { | ~~^~~~~~~~~~~~~~~~~ bms.cpp: In member function ‘void BMS::print_pseudo()’: bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1086 | for(int l=0; l < M.n_cols; l++) { | ~~^~~~~~~~~~ bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1089 | for(int l=0; l < P[model].n_cols; l++) { | ~~^~~~~~~~~~~~~~~~~ bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1100 | for(int i=0; i < y->n_rows; i++) { | ~~^~~~~~~~~~~ bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1103 | for(int l=0; l < M.n_cols; l++) { | ~~^~~~~~~~~~ bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1106 | for(int l=0; l < P[model].n_cols; l++) { | ~~^~~~~~~~~~~~~~~~~ bms.cpp: In constructor ‘BMS::BMS(const arma::Mat*, const arma::Mat&, arma::Mat, arma::Mat, arma::Mat, arma::Mat, double, double, double, std::string, gsl_rng**, int, bool)’: bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1188 | for(int i=0; i < y->n_cols; i++) { | ~~^~~~~~~~~~~ bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1192 | if(C(i,model)+1 > _n.size()) { | ~~~~~~~~~~~~~^~~~~~~~~~~ bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’: bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1348 | for(int i=0; i < M.n_cols; i++) { | ~~^~~~~~~~~~ bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1354 | for(int i=0; i < M.n_cols; i++) { | ~~^~~~~~~~~~ bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1360 | for(int i=0; i < P[0].n_cols; i++) { | ~~^~~~~~~~~~~~~ bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1366 | for(int i=0; i < P[1].n_cols; i++) { | ~~^~~~~~~~~~~~~ bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1372 | for(int i=0; i < P[0].n_cols; i++) { | ~~^~~~~~~~~~~~~ bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1378 | for(int i=0; i < P[1].n_cols; i++) { | ~~^~~~~~~~~~~~~ g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -O3 fasta.o extract_transcripts.cpp -o ../bin/extract_transcripts extract_transcripts.cpp: In function ‘int main(int, char**)’: extract_transcripts.cpp:122:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 122 | for(int i=0; i < tokens2.size(); i++) { | ~~^~~~~~~~~~~~~~~~ extract_transcripts.cpp:169:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 169 | for(int i=0; i < tokens.size(); i++) { | ~~^~~~~~~~~~~~~~~ extract_transcripts.cpp:195:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 195 | for(int i=0; i < it->starts()->size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~ extract_transcripts.cpp:203:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 203 | while(faline < stitch.size()) { | ~~~~~~~^~~~~~~~~~~~~~~ extract_transcripts.cpp:108:7: warning: unused variable ‘line’ [-Wunused-variable] 108 | int line=0; | ^~~~ g++ -DVERSION=1.0.11 -DARMA_64BIT_WORD -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 uh.o sokal.o mmcollapse.cpp -o ../bin/mmcollapse -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran mmcollapse.cpp: In function ‘void get_unidentifiable_transcripts(std::string, std::vector, std::allocator > >&, std::vector, std::allocator > >&, std::vector, std::allocator > >&, std::map, std::map, double> >&, std::map, std::map, double> >&, std::map, std::map, double> >&, std::map, int>&, std::vector, std::allocator > >&, std::map, bool>&)’: mmcollapse.cpp:158:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 158 | for(int i=0; i < tokens.size(); i++) { | ~~^~~~~~~~~~~~~~~ mmcollapse.cpp:213:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 213 | for(int i=0; i < tokens2.size(); i++) isIdent[tokens2[i]]=1; | ~~^~~~~~~~~~~~~~~~ mmcollapse.cpp:259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 259 | for(int i=0; i < tokens.size(); i++) { | ~~^~~~~~~~~~~~~~~ mmcollapse.cpp: In function ‘void collapse(arma::cube&, std::vector, std::allocator > >&, std::map, int>&, std::vector >)’: mmcollapse.cpp:400:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 400 | for(int s=0; s < R.n_slices; s++) { | ~~^~~~~~~~~~~~ mmcollapse.cpp:401:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 401 | for(int t=0; t < candidates.size(); t++) { | ~~^~~~~~~~~~~~~~~~~~~ mmcollapse.cpp:402:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 402 | for(int j=1; j < indexes.size(); j++) { | ~~^~~~~~~~~~~~~~~~ mmcollapse.cpp:414:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 414 | for(int j=1; j < indexes.size(); j++) { | ~~^~~~~~~~~~~~~~~~ mmcollapse.cpp:417:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 417 | for(int i=0; i < R.n_cols; i++) { | ~~^~~~~~~~~~ mmcollapse.cpp:426:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 426 | for(int i=0; i < indexes.size(); i++) { | ~~^~~~~~~~~~~~~~~~ mmcollapse.cpp:431:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 431 | for(int i=1; i < tset.size(); i++) { | ~~^~~~~~~~~~~~~ mmcollapse.cpp:437:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 437 | for(int i=1; i < indexes.size(); i++) { | ~~^~~~~~~~~~~~~~~~ mmcollapse.cpp: In function ‘std::map join_traces(arma::mat&, std::vector, std::allocator > >&, std::vector, std::allocator > >)’: mmcollapse.cpp:445:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 445 | for(int t=0; t < allnames.size(); t++) tmap[allnames[t]]=t; | ~~^~~~~~~~~~~~~~~~~ mmcollapse.cpp:452:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 452 | for(int c=0; c < candidates.size(); c++) { | ~~^~~~~~~~~~~~~~~~~~~ mmcollapse.cpp:456:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 456 | for(int t=0; t < tokens.size(); t++) { | ~~^~~~~~~~~~~~~~~ mmcollapse.cpp:464:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 464 | for(int t=1; t < indexes.size(); t++) { | ~~^~~~~~~~~~~~~~~~ mmcollapse.cpp:469:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 469 | for(int t=1; t < indexes.size(); t++) { | ~~^~~~~~~~~~~~~~~~ mmcollapse.cpp:476:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 476 | for(int i=0; i < toshed.size(); i++) { | ~~^~~~~~~~~~~~~~~ mmcollapse.cpp: In function ‘void mean_corrs(const arma::cube&, const arma::umat&, arma::mat&, arma::mat&, std::vector >, std::vector >, double)’: mmcollapse.cpp:486:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 486 | for(int v= 0; v < R.n_rows; v++) { | ~~^~~~~~~~~~ mmcollapse.cpp:492:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 492 | for(int i=0; i < u.size(); i++) { | ~~^~~~~~~~~~ mmcollapse.cpp: In function ‘void get_corrs(arma::cube&, arma::mat&, const std::vector, std::allocator > >&, std::map, int>&)’: mmcollapse.cpp:519:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 519 | for(int s=0; s < basenames.size(); s++) { | ~~^~~~~~~~~~~~~~~~~~ mmcollapse.cpp:543:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 543 | for(int t=0; t < tokens.size(); t++) { | ~~^~~~~~~~~~~~~~~ mmcollapse.cpp: In function ‘int main(int, char**)’: mmcollapse.cpp:632:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 632 | for(int i=1; i < basenames.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ mmcollapse.cpp:691:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 691 | for(int s=0; s < basenames.size(); s++) { | ~~^~~~~~~~~~~~~~~~~~ mmcollapse.cpp:707:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 707 | for(int i=0; i < candidates.size(); i++) ts.push_back(i); | ~~^~~~~~~~~~~~~~~~~~~ mmcollapse.cpp:732:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 732 | for(int i=0 ;i < maxcorrs.size(); i++) { | ~~^~~~~~~~~~~~~~~~~ mmcollapse.cpp:738:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 738 | for(int i=0 ;i < mincorrs.size(); i++) { | ~~^~~~~~~~~~~~~~~~~ mmcollapse.cpp:802:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 802 | for(int i=0 ;i < maxcorrs.size(); i++) { | ~~^~~~~~~~~~~~~~~~~ mmcollapse.cpp:808:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 808 | for(int i=0 ;i < mincorrs.size(); i++) { | ~~^~~~~~~~~~~~~~~~~ mmcollapse.cpp:827:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 827 | for(int s=0; s < basenames.size(); s++) { | ~~^~~~~~~~~~~~~~~~~~ mmcollapse.cpp:852:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 852 | for(int t=0; t < tokens.size(); t++) { | ~~^~~~~~~~~~~~~~~ mmcollapse.cpp:882:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 882 | for(int t=0; t < tokens2.size(); t++) { | ~~^~~~~~~~~~~~~~~~ mmcollapse.cpp:934:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 934 | for(int t=0; t < M.n_cols; t++) { | ~~^~~~~~~~~~ mmcollapse.cpp:963:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 963 | for(int i=1; i < tokens2.size(); i++) { | ~~^~~~~~~~~~~~~~~~ mmcollapse.cpp:976:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 976 | if(MM.size1() < i+1 ) factor1=2; | ~~~~~~~~~~~^~~~~ mmcollapse.cpp:977:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 977 | if(MM.size2() < j+1 ) factor2=2; | ~~~~~~~~~~~^~~~~ mmcollapse.cpp:1010:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1010 | for(int t=0; t < ids.size(); t++) { | ~~^~~~~~~~~~~~ mmcollapse.cpp:1083:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1083 | for(int i=0; i < ids.size(); i++) { | ~~^~~~~~~~~~~~ mmcollapse.cpp:1092:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1092 | for(int v = 0; v < M.n_cols; v++) { | ~~^~~~~~~~~~ mmcollapse.cpp:840:9: warning: unused variable ‘isident’ [-Wunused-variable] 840 | int isident=0; | ^~~~~~~ hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’: hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 163 | for(int i = 0; i < transcriptName.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’: hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 184 | for(int i = 0; i < currentReadTranscripts.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’: hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 24 | if (VAL > numeric_limits::max()) { \ | ^ hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’ 191 | WRITE_UINT(ofs, hitsfileSchema); | ^~~~~~~~~~ hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 193 | for(int i = 0; i < transcriptName.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 24 | if (VAL > numeric_limits::max()) { \ hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’ 196 | WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ]) | ^~~~~~~~~~ hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’: hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 236 | for(int i = 0; i < currentReadTranscripts.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector >*, std::map, double>*, std::map, int>*, std::map, std::vector > >*, std::vector > >*)’: hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable] 356 | size_t nextStrLen; | ^~~~~~~~~~ hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’: hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type] 447 | } | ^ g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 sokal.o uh.o hitsio.o mmseq.cpp -o ../bin/mmseq -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 fasta.o hitsio.o bam2hits.cpp -o ../bin/bam2hits -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran mmseq.cpp: In function ‘std::vector meanvar(std::vector, double, double)’: mmseq.cpp:130:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 130 | for(int i=0;i < v.size(); i++) { | ~~^~~~~~~~~~ mmseq.cpp: In function ‘int main(int, char**)’: mmseq.cpp:244:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 244 | for(int i=0; i < tokens.size(); i++) { | ~~^~~~~~~~~~~~~~~ mmseq.cpp:423:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 423 | if(M.size1() < m ) factor1=2; | ~~~~~~~~~~^~~ mmseq.cpp:424:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 424 | if(M.size2() < n ) factor2=2; | ~~~~~~~~~~^~~ mmseq.cpp:594:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 594 | for(unsigned t=0; t < n; t++) { | ~~^~~ mmseq.cpp:736:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 736 | for(unsigned t=0; t < n; t++) | ~~^~~ mmseq.cpp:765:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 765 | for(unsigned t=0; t < n; t++) | ~~^~~ mmseq.cpp:774:11: warning: unused variable ‘threadid’ [-Wunused-variable] 774 | int threadid=OMP_GET_THREAD_NUM; | ^~~~~~~~ mmseq.cpp:829:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 829 | for(unsigned t=0; t < n; t++) | ~~^~~ mmseq.cpp:912:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 912 | for(unsigned t=0; t < n; t++) { | ~~^~~ mmseq.cpp:940:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 940 | for(int i=0; i < identical_transcripts.size() * trace_length; i++) mu_trace_identical[i]=0; | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mmseq.cpp:961:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map, std::vector > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 961 | for(int i=0; i < gene2transcripts.size() * trace_length; i++) mu_trace_gene[i]=0; | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1098:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1098 | for(unsigned t=0; t < n; t++) gofs << indexSid[t] << " "; | ~~^~~ mmseq.cpp:1112:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1112 | for(int i=0; i < percentiles.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1136:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1136 | for(int j=0; j < percentiles.size(); j++) { | ~~^~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1144:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1144 | for(int j=0; j < percentiles.size(); j++) { | ~~^~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1149:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1149 | for(int i=0;i < identical_transcripts.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1156:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1156 | for(int j=0; j < percentiles.size(); j++) { | ~~^~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1161:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map, std::vector > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1161 | for(int i=0;i < gene2transcripts.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1168:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1168 | for(int j=0; j < percentiles.size(); j++) { | ~~^~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1179:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1179 | for(int j=0; j < percentiles.size(); j++) { | ~~^~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1189:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1189 | for(int j=0; j < percentiles.size(); j++) { | ~~^~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1208:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1208 | for(int t=0; t < identical_transcripts.size() ; t++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1212:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map, std::vector > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1212 | for(int t=0; t < gene2transcripts.size(); t++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1226:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1226 | for(int i=0; i < identical_transcripts.size() ; i++) meanmu_identical[i] /= trace_length; | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1227:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map, std::vector > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1227 | for(int i=0; i < gene2transcripts.size(); i++) meanmu_gene[i]/= trace_length; | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1330:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1330 | for(int t=0; t < identical_transcripts.size(); t++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1349:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map, std::vector > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1349 | for(int g=0; g < gene2transcripts.size(); g++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1473:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1473 | for(int i=0; i < percentiles.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1475:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1475 | if(i==percentiles.size()-1) { | ~^~~~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1482:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1482 | for(int i=0; i < percentiles.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1484:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1484 | if(i==percentiles.size()-1) { | ~^~~~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1506 | for(int i=0; i < percentiles.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1508:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1508 | if(i==percentiles.size()-1) { | ~^~~~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1514:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1514 | for(int i=0; i < percentiles.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1516:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1516 | if(i==percentiles.size()-1) { | ~^~~~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1536:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1536 | for(int i=0; i < percentiles.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1538:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1538 | if(i==percentiles.size()-1) { | ~^~~~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1544:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1544 | for(int i=0; i < percentiles.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1546:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1546 | if(i==percentiles.size()-1) { | ~^~~~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1560:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1560 | for(int i=0; i < percentiles.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1562:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1562 | if(i==percentiles.size()-1) { | ~^~~~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1582:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1582 | for(int i=0; i < percentiles.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1584:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1584 | if(i==percentiles.size()-1) { | ~^~~~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1599:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1599 | for(int i=0; i < percentiles.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1601:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1601 | if(i==percentiles.size()-1) { | ~^~~~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1619:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1619 | for(int i=0; i < percentiles.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1621:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1621 | if(i==percentiles.size()-1) { | ~^~~~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1644:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1644 | for(int i=0; i < percentiles.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1646:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1646 | if(i==percentiles.size()-1) { | ~^~~~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1656:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1656 | for(int i=0; i < percentiles.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ mmseq.cpp:1658:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1658 | if(i==percentiles.size()-1) { | ~^~~~~~~~~~~~~~~~~~~~~~ mmseq.cpp:308:8: warning: unused variable ‘buf16384’ [-Wunused-variable] 308 | char buf16384[16384]; | ^~~~~~~~ mmseq.cpp:391:8: warning: variable ‘doublehit’ set but not used [-Wunused-but-set-variable] 391 | bool doublehit; | ^~~~~~~~~ bam2hits.cpp: In function ‘void outputMergeHeaders(std::vector&, char, const char*, bool, HitsfileWriter&)’: bam2hits.cpp:109:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 109 | for(int i=0; i < sortedfastas.size()-1; i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ bam2hits.cpp:119:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 119 | for(int j=0; j < curSet.size()-1; j++) { | ~~^~~~~~~~~~~~~~~~~ bam2hits.cpp:137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 137 | for(int j=0; j < curSet.size()-1; j++) { | ~~^~~~~~~~~~~~~~~~~ bam2hits.cpp: In function ‘std::vector repetitiveTranscriptFilter(std::vector&, int)’: bam2hits.cpp:218:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 218 | for(int j=0; j < alns.size(); j++) { | ~~^~~~~~~~~~~~~ bam2hits.cpp:219:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 219 | if(i < torem.size() && j==torem[i]) { | ~~^~~~~~~~~~~~~~ bam2hits.cpp: In function ‘int main(int, char**)’: bam2hits.cpp:518:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 518 | if(_B != tg[0].size()-2) { | ~~~^~~~~~~~~~~~~~~~~ bam2hits.cpp:520:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 520 | if(_A == tg[0].size()-2) { | ~~~^~~~~~~~~~~~~~~~~ bam2hits.cpp:522:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 522 | if(_A != tg[1].size()-2) { | ~~~^~~~~~~~~~~~~~~~~ bam2hits.cpp:558:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 558 | for(int i=1; i < tokens2.size(); i++) { | ~~^~~~~~~~~~~~~~~~ bam2hits.cpp:609:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 609 | for(int i=0; i < fastas.size(); i++) { | ~~^~~~~~~~~~~~~~~ bam2hits.cpp:645:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 645 | for(int i=0;i < fastas.size(); i++) transcriptCounts[i] /= (double)fastas[i].seq().size(); | ~~^~~~~~~~~~~~~~~ bam2hits.cpp:659:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 659 | for(int i=0; i < fastas.size(); i++) { | ~~^~~~~~~~~~~~~~~ bam2hits.cpp:662:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 662 | for(int j =0; j < fastas[i].seq().size(); j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~ bam2hits.cpp:663:44: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 663 | int tag = (j <= MSEQ_BEFORE || j >= fastas[i].seq().size()-MSEQ_AFTER) ? -2 : 0; | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bam2hits.cpp:791:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 791 | for(int j=MSEQ_BEFORE + 1; j <= fastas[i].seq().length()-MSEQ_AFTER; j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bam2hits.cpp:920:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 920 | for(int j=1; j < frequencies.size()-WINDOWFORISIZEMODE + 1; j++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bam2hits.cpp:948:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 948 | for(int i=0; i < testIsizes.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~ bam2hits.cpp:959:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 959 | for(int i=0; i < heights.size(); i++) { | ~~^~~~~~~~~~~~~~~~ bam2hits.cpp:997:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 997 | for(int fl=1; fl <= (it->seq()).size(); fl++) { | ~~~^~~~~~~~~~~~~~~~~~~~~ bam2hits.cpp:1091:56: warning: comparing the result of pointer addition ‘(bam_aux_get(((const bam1_t*)line), ((const char*)"NM")) + ((sizetype)ait.__gnu_cxx::__normal_iterator >::operator->()->Alignment::NM()))’ and NULL [-Waddress] 1091 | ait->NM(ait->NM() + bam_aux_get(line,"NM") == NULL ? 0 : bam_aux2i(bam_aux_get(line,"NM"))); | ^ bms.cpp: In member function ‘arma::Col BMS::m2v(arma::Mat)’: bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 36 | for(int i=0; i < P.n_cols; i++) { | ~~^~~~~~~~~~ bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 37 | for(int j=0; j < P.n_rows; j++) { | ~~^~~~~~~~~~ bms.cpp: In member function ‘std::vector BMS::meanvar(arma::Col)’: bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 76 | for(int i=0;i < v.n_elem; i++) { | ~~^~~~~~~~~~ bms.cpp: In member function ‘void BMS::print(bool)’: bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 93 | for(int feature=0; feature < y->n_rows; feature++) { | ~~~~~~~~^~~~~~~~~~~ bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 97 | for(int i=0; i < M.n_cols; i++) { | ~~^~~~~~~~~~ bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 102 | for(int l=0; l < P[model].n_cols; l++) { | ~~^~~~~~~~~~~~~~~~~ bms.cpp: In member function ‘void BMS::printtune(int)’: bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 132 | for(int feature=0; feature < y->n_rows; feature++) { | ~~~~~~~~^~~~~~~~~~~ bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’: bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 185 | for(int j=0; j < y->n_rows; j++) { | ~~^~~~~~~~~~~ bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’: bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 253 | for(int j=0; j < y->n_rows; j++) { | ~~^~~~~~~~~~~ bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 255 | for(int b=0; b < M.n_cols; b++) { | ~~^~~~~~~~~~ bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’: bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 332 | for(int j=0; j < y->n_rows; j++) { | ~~^~~~~~~~~~~ bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 334 | for(int c=0; c < P[model].n_cols; c++) { | ~~^~~~~~~~~~~~~~~~~ bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’: bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 415 | for(int j=0; j < y->n_rows; j++) { | ~~^~~~~~~~~~~ bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’: bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 504 | for(int j=0; j < y->n_rows; j++) { | ~~^~~~~~~~~~~ bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 506 | for(int l=0; l < P[model].n_cols; l++) { | ~~^~~~~~~~~~~~~~~~~ bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’: bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 559 | for(int j=0; j < y->n_rows; j++) { | ~~^~~~~~~~~~~ bms.cpp: In member function ‘void BMS::copy_pseudo()’: bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 582 | for(int j=0; j < y->n_rows; j++) { | ~~^~~~~~~~~~~ bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 585 | for(int c=0; c < P[0].n_cols; c++) { | ~~^~~~~~~~~~~~~ bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’: bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 603 | for(int j=0; j < y->n_cols; j++) { | ~~^~~~~~~~~~~ bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 610 | for(int i=0; i < y->n_cols; i++) { | ~~^~~~~~~~~~~ bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’: bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 631 | for(int j=0; j < y->n_cols; j++) { | ~~^~~~~~~~~~~ bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 638 | for(int i=0; i < M.n_cols; i++) { | ~~^~~~~~~~~~ bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 646 | for(int i=0; i < M.n_cols; i++) { | ~~^~~~~~~~~~ bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 651 | for(int i=0; i < M.n_cols; i++) { | ~~^~~~~~~~~~ bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’: bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 663 | for(int l=0; l < P[model].n_cols; l++) { | ~~^~~~~~~~~~~~~~~~~ bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 666 | for(int i=0; i < y->n_cols; i++) { | ~~^~~~~~~~~~~ bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 673 | for(int i=0; i < y->n_cols; i++) { | ~~^~~~~~~~~~~ bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 681 | for(int l=0; l < P[model].n_cols; l++) { | ~~^~~~~~~~~~~~~~~~~ bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 686 | for(int l=0; l < P[model].n_cols; l++) { | ~~^~~~~~~~~~~~~~~~~ bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’: bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 699 | for(int l=0; l < P[model].n_cols; l++) { | ~~^~~~~~~~~~~~~~~~~ bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 704 | for(int l=0; l < P[model].n_cols; l++) { | ~~^~~~~~~~~~~~~~~~~ bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 711 | for(int l=0; l < P[model].n_cols; l++) { | ~~^~~~~~~~~~~~~~~~~ bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’: bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 729 | for(int i=0; i < y->n_cols; i++) { | ~~^~~~~~~~~~~ bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 740 | for(int i=0; i < y->n_cols; i++) { | ~~^~~~~~~~~~~ bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 751 | for(int i=0; i < y->n_cols; i++) { | ~~^~~~~~~~~~~ bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 763 | for(int i=0; i < y->n_cols; i++) { | ~~^~~~~~~~~~~ bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’: bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 877 | for(int i=0; i < y->n_cols; i++) { | ~~^~~~~~~~~~~ bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’: bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 931 | for(int i=0; i < y->n_cols; i++) { | ~~^~~~~~~~~~~ bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 940 | for(int j=0; j < M.n_cols; j++) { | ~~^~~~~~~~~~ bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 947 | for(int l=0; l < P[model].n_cols; l++) { | ~~^~~~~~~~~~~~~~~~~ bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’: bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 968 | for(int l=0; l < M.n_cols; l++) { | ~~^~~~~~~~~~ bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 974 | for(int l=0; l < P[model].n_cols; l++) { | ~~^~~~~~~~~~~~~~~~~ bms.cpp: In member function ‘void BMS::print_pseudo()’: bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1086 | for(int l=0; l < M.n_cols; l++) { | ~~^~~~~~~~~~ bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1089 | for(int l=0; l < P[model].n_cols; l++) { | ~~^~~~~~~~~~~~~~~~~ bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1100 | for(int i=0; i < y->n_rows; i++) { | ~~^~~~~~~~~~~ bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1103 | for(int l=0; l < M.n_cols; l++) { | ~~^~~~~~~~~~ bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1106 | for(int l=0; l < P[model].n_cols; l++) { | ~~^~~~~~~~~~~~~~~~~ bms.cpp: In constructor ‘BMS::BMS(const arma::Mat*, const arma::Mat&, arma::Mat, arma::Mat, arma::Mat, arma::Mat, double, double, double, std::string, gsl_rng**, int, bool)’: bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1188 | for(int i=0; i < y->n_cols; i++) { | ~~^~~~~~~~~~~ bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 1192 | if(C(i,model)+1 > _n.size()) { | ~~~~~~~~~~~~~^~~~~~~~~~~ bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’: bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1348 | for(int i=0; i < M.n_cols; i++) { | ~~^~~~~~~~~~ bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1354 | for(int i=0; i < M.n_cols; i++) { | ~~^~~~~~~~~~ bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1360 | for(int i=0; i < P[0].n_cols; i++) { | ~~^~~~~~~~~~~~~ bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1366 | for(int i=0; i < P[1].n_cols; i++) { | ~~^~~~~~~~~~~~~ bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1372 | for(int i=0; i < P[0].n_cols; i++) { | ~~^~~~~~~~~~~~~ bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 1378 | for(int i=0; i < P[1].n_cols; i++) { | ~~^~~~~~~~~~~~~ g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 hitsio.o hitstools.cpp -o ../bin/hitstools -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran hitstools.cpp: In function ‘void convert(char*, std::string)’: hitstools.cpp:51:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 51 | for(int i = 0; i < transcriptName.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ hitstools.cpp: In function ‘int main(int, char**)’: hitstools.cpp:96:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 96 | for(int i = 0; i < transcriptName.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ hitstools.cpp:136:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 136 | for(int i = 0; i < transcriptName.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O2 bms.o mmdiff.cpp -o ../bin/mmdiff -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran mmdiff.cpp: In function ‘void parse_mmseq(std::vector, std::allocator > >, std::vector, std::allocator > >&, arma::Mat&, arma::Mat&, arma::Mat&, int, int, double, bool)’: mmdiff.cpp:100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 100 | for(int i=0; i < filenames.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ mmdiff.cpp:111:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 111 | for(int j=0; j < tokens.size(); j++) { | ~~^~~~~~~~~~~~~~~ mmdiff.cpp:138:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 138 | if(k + 1 > features.size()) { | ~~~~~~^~~~~~~~~~~~~~~~~ mmdiff.cpp:147:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 147 | if(k+1 > y.n_rows) { | ~~~~^~~~~~~~~~ mmdiff.cpp:152:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 152 | if(!useprops && tokens[lmg_ind]=="NA" || useprops && tokens[mp_ind]=="NA") { | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ mmdiff.cpp:173:62: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 173 | if(range_start >=0 && range_end > range_start && range_end < y.n_rows) { | ~~~~~~~~~~^~~~~~~~~~ mmdiff.cpp:94:46: warning: variable ‘mcse_ind’ set but not used [-Wunused-but-set-variable] 94 | int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1; | ^~~~~~~~ mmdiff.cpp:94:59: warning: variable ‘iact_ind’ set but not used [-Wunused-but-set-variable] 94 | int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1; | ^~~~~~~~ mmdiff.cpp: In function ‘void apply_normalisation(std::vector, std::allocator > >, arma::Mat&, arma::Mat&, double)’: mmdiff.cpp:212:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 212 | for(int i=0; i < uh.n_rows; i++) { | ~~^~~~~~~~~~~ mmdiff.cpp:214:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 214 | for(int j=0; j < uh.n_cols; j++) { | ~~^~~~~~~~~~~ mmdiff.cpp:230:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 230 | for(int i=0; i < use.size(); i++) { | ~~^~~~~~~~~~~~ mmdiff.cpp:232:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 232 | for(int j=0; j < y.n_cols; j++) { | ~~^~~~~~~~~~ mmdiff.cpp:239:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 239 | for(int sample=0; sample < y.n_cols; sample++) { | ~~~~~~~^~~~~~~~~~ mmdiff.cpp:241:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 241 | for(int i=0; i < use.size(); i++) { | ~~^~~~~~~~~~~~ mmdiff.cpp:246:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 246 | for(int i=0; i < y.n_rows; i++) { | ~~^~~~~~~~~~ mmdiff.cpp: In function ‘void apply_permutation(arma::Mat&, arma::Mat&)’: mmdiff.cpp:257:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 257 | for(int j=0; j< y.n_cols; j++) randinds.push_back(j); | ~^~~~~~~~~~ mmdiff.cpp:258:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 258 | for(int i=0; i < y.n_rows; i++) { | ~~^~~~~~~~~~ mmdiff.cpp:259:19: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 259 | random_shuffle(randinds.begin(), randinds.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from mmdiff.cpp:31: /usr/include/c++/15/bits/stl_algo.h:4509:5: note: declared here 4509 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ mmdiff.cpp:260:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 260 | for(int j=0; j < y.n_cols; j++) { | ~~^~~~~~~~~~ mmdiff.cpp: In function ‘void parse_matrices(std::string, arma::Mat&, arma::Mat&, arma::Mat&, arma::Mat&, int)’: mmdiff.cpp:310:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 310 | for(int t=0; t < tokens.size(); t++) { | ~~^~~~~~~~~~~~~~~ mmdiff.cpp: In function ‘int main(int, char**)’: mmdiff.cpp:420:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 420 | for(int i=0; i < arguments.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ mmdiff.cpp:431:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 431 | for(int i=0; i < arguments.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ mmdiff.cpp:439:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 439 | while(ss < arguments.size()) { | ~~~^~~~~~~~~~~~~~~~~~ mmdiff.cpp:451:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 451 | if(ss != arguments.size()) { | ~~~^~~~~~~~~~~~~~~~~~~ mmdiff.cpp:578:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 578 | for(int i=0; i < arguments.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ mmdiff.cpp:640:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 640 | for(int i=0; i < simple_de.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ mmdiff.cpp:759:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 759 | if(inburnin && iter == OUTLEN/10 || !inburnin && iter==tuneiters) { | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ mmdiff.cpp:764:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 764 | for(int feature=0; feature < features.size(); feature++) { | ~~~~~~~~^~~~~~~~~~~~~~~~~ mmdiff.cpp:837:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] 837 | if(inburnin && iter % subsample_burnin ==0 || !inburnin && iter >= tuneiters && (iter - tuneiters) % subsample_iter == 0) { | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mmdiff.cpp:886:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 886 | for(int l=0; l < M.n_cols; l++) { | ~~^~~~~~~~~~ mmdiff.cpp:898:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 898 | for(int f=0; f < samplenames.size(); f++) { | ~~^~~~~~~~~~~~~~~~~~~~ mmdiff.cpp:902:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const unsigned int’} [-Wsign-compare] 902 | found2 = found2==string::npos ? -1 : found2; | ~~~~~~^~~~~~~~~~~~~~ mmdiff.cpp:907:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 907 | for(int f=0; f < samplenames.size(); f++) { | ~~^~~~~~~~~~~~~~~~~~~~ mmdiff.cpp:909:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 909 | if(f < samplenames.size()-1) cout << "\t"; | ~~^~~~~~~~~~~~~~~~~~~~~~ mmdiff.cpp:914:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 914 | for(int feature=0; feature < features.size(); feature++) { | ~~~~~~~~^~~~~~~~~~~~~~~~~ mmdiff.cpp:926:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 926 | for(int l=0; l < M.n_cols; l++) { | ~~^~~~~~~~~~ mmdiff.cpp:936:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 936 | for(int f=0; f < samplenames.size(); f++) { | ~~^~~~~~~~~~~~~~~~~~~~ mmdiff.cpp:939:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 939 | for(int f=0; f < samplenames.size(); f++) { | ~~^~~~~~~~~~~~~~~~~~~~ mmdiff.cpp:941:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 941 | if(f < samplenames.size()-1) cout << "\t"; | ~~^~~~~~~~~~~~~~~~~~~~~~ mmdiff.cpp:951:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 951 | for(int feature=0; feature < features.size(); feature++) { | ~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/bin/ld: /tmp/ccRA8A1I.ltrans1.ltrans.o: in function `main': /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/src/bam2hits.cpp:653:(.text.startup+0x57db): warning: the use of `tmpnam' is dangerous, better use `mkstemp' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.1sPlCa + umask 022 + cd /builddir/build/BUILD/mmseq-1.0.11-build + '[' /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT ++ dirname /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT + mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build + mkdir /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd mmseq-1.0.11 + rm -rf /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT + mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin + install -p -m 0755 bin/bam2hits /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin + install -p -m 0755 bin/extract_transcripts /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin + install -p -m 0755 bin/hitstools /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin + install -p -m 0755 bin/mmcollapse /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin + install -p -m 0755 bin/mmdiff /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin + install -p -m 0755 bin/mmseq /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin + install -p -m 0755 bin/offsetGTF /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin + install -p -m 0755 bin/t2g_hits /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin + install -p -m 0755 bin/fastagrep.sh bin/mouse_strain_transcriptome.sh bin/usage.sh /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin + install -p -m 0755 bin/filterGTF.rb bin/haploref.rb bin/testregexp.rb /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin + install -p -m 0755 bin/ensembl_gtf_to_gff.pl /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 1.0.11-23.fc42 --unique-debug-suffix -1.0.11-23.fc42.i386 --unique-debug-src-base mmseq-1.0.11-23.fc42.i386 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11 find-debuginfo: starting Extracting debug info from 8 files DWARF-compressing 8 files sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/mmseq-1.0.11-23.fc42.i386 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/bin/fastagrep.sh from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/bin/mouse_strain_transcriptome.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/bin/usage.sh from /bin/bash to #!/usr/bin/bash mangling shebang in /usr/bin/filterGTF.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/bin/haploref.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/bin/testregexp.rb from /usr/bin/env ruby to #!/usr/bin/ruby mangling shebang in /usr/bin/ensembl_gtf_to_gff.pl from /usr/bin/env perl to #!/usr/bin/perl + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT Scanned 12 directories and 40 files, processed 0 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/mmseq-1.0.11-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.YBA3X8 + umask 022 + cd /builddir/build/BUILD/mmseq-1.0.11-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m32 -march=i686 -mtune=generic -msse2 -mfpmath=sse -mstackrealign -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd mmseq-1.0.11 ++ bin/mmseq --version ++ true + test mmseq-1.0.11 = mmseq-1.0.11 + RPM_EC=0 ++ jobs -p + exit 0 Processing files: mmseq-1.0.11-23.fc42.i686 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.BwpxbW + umask 022 + cd /builddir/build/BUILD/mmseq-1.0.11-build + cd mmseq-1.0.11 + DOCDIR=/builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq + cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/README.md /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq + cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/COPYING /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq + cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/doc /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq + RPM_EC=0 ++ jobs -p + exit 0 Provides: mmseq = 1.0.11-23.fc42 mmseq(x86-32) = 1.0.11-23.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/bash /usr/bin/perl /usr/bin/ruby /usr/bin/sh libboost_iostreams.so.1.83.0 libboost_regex.so.1.83.0 libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.2) libc.so.6(GLIBC_2.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.32) libc.so.6(GLIBC_2.33) libc.so.6(GLIBC_2.34) libc.so.6(GLIBC_2.38) libc.so.6(GLIBC_2.4) libflexiblas.so.3 libgcc_s.so.1 libgcc_s.so.1(GCC_3.0) libgcc_s.so.1(GCC_3.3.1) libgomp.so.1 libgomp.so.1(GOMP_1.0) libgomp.so.1(GOMP_4.0) libgomp.so.1(OMP_1.0) libgsl.so.27 libgslcblas.so.0 libhts.so.3 libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libm.so.6(GLIBC_2.29) libstdc++.so.6 libstdc++.so.6(CXXABI_1.3) libstdc++.so.6(CXXABI_1.3.15) libstdc++.so.6(CXXABI_1.3.8) libstdc++.so.6(CXXABI_1.3.9) libstdc++.so.6(GLIBCXX_3.4) libstdc++.so.6(GLIBCXX_3.4.11) libstdc++.so.6(GLIBCXX_3.4.15) libstdc++.so.6(GLIBCXX_3.4.20) libstdc++.so.6(GLIBCXX_3.4.21) libstdc++.so.6(GLIBCXX_3.4.26) libstdc++.so.6(GLIBCXX_3.4.29) libstdc++.so.6(GLIBCXX_3.4.30) libstdc++.so.6(GLIBCXX_3.4.32) libstdc++.so.6(GLIBCXX_3.4.9) perl(strict) rtld(GNU_HASH) Processing files: mmseq-debugsource-1.0.11-23.fc42.i686 Provides: mmseq-debugsource = 1.0.11-23.fc42 mmseq-debugsource(x86-32) = 1.0.11-23.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: mmseq-debuginfo-1.0.11-23.fc42.i686 Provides: debuginfo(build-id) = 03c945d410a27cb5fa79c17a1719dd080590091d debuginfo(build-id) = 47381bd37929c17dc35906764b5a384d7d0a6998 debuginfo(build-id) = 8b4a3a423b21ba8dd8b737849eee471c5f2e3169 debuginfo(build-id) = 9b76a28bb6dc53a54b7097dd0d509eac29f600df debuginfo(build-id) = b397ed0738e90d6f26f274353dd149c22803eb3a debuginfo(build-id) = e0ad5c55c6425ff54fba44046db7cdbdf0d7cfb9 debuginfo(build-id) = f3e8fe7a8c23793198d9b61925c6478a11986940 debuginfo(build-id) = f7d2225e5e812087f978370ac28af8ed117fd7dc mmseq-debuginfo = 1.0.11-23.fc42 mmseq-debuginfo(x86-32) = 1.0.11-23.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: mmseq-debugsource(x86-32) = 1.0.11-23.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT Wrote: /builddir/build/RPMS/mmseq-debugsource-1.0.11-23.fc42.i686.rpm Wrote: /builddir/build/RPMS/mmseq-1.0.11-23.fc42.i686.rpm Wrote: /builddir/build/RPMS/mmseq-debuginfo-1.0.11-23.fc42.i686.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.cIdbef + umask 022 + cd /builddir/build/BUILD/mmseq-1.0.11-build + test -d /builddir/build/BUILD/mmseq-1.0.11-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/mmseq-1.0.11-build + rm -rf /builddir/build/BUILD/mmseq-1.0.11-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild mmseq-1.0.11-23.fc42.src.rpm Finish: build phase for mmseq-1.0.11-23.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-i686-1738534848.203216/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-23.fc42.src.rpm) Config(child) 1 minutes 7 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "mmseq", "epoch": null, "version": "1.0.11", "release": "23.fc42", "arch": "i686" }, { "name": "mmseq-debuginfo", "epoch": null, "version": "1.0.11", "release": "23.fc42", "arch": "i686" }, { "name": "mmseq", "epoch": null, "version": "1.0.11", "release": "23.fc42", "arch": "src" }, { "name": "mmseq-debugsource", "epoch": null, "version": "1.0.11", "release": "23.fc42", "arch": "i686" } ] } RPMResults finished