here

Declare the location of the current script

The intended use is to add a call to here::i_am() at the beginning of your script or in the first chunk of your rmarkdown report.¹ This achieves the following:

• The location of the current script or report within the project is declared
• The project root is initialized, consistent with the location of the current script or report
• An informative message is emitted.²

The first argument to here::i_am() should be the path to the current file, relative to the project root. The penguins.R script uses:

here::i_am("prepare/penguins.R")
#> here() starts at /tmp/RtmpnoXhd8/Rinst301434451937/here/demo-project

here::i_am() displays the top-level directory of the current project. Because the project has a prepare/ directory in its root that contains penguins.R, it is correctly inferred as the project root.

After here::i_am(), insert library(here) to make the here() function available:³

library(here)

The top-level directory is also returned from the here() function:

here()
#> [1] "/tmp/RtmpnoXhd8/Rinst301434451937/here/demo-project"

One important distinction from the working directory is that this remains stable even if the working directory is changed:

setwd("analysis")
getwd()
#> [1] "/tmp/RtmpnoXhd8/Rinst301434451937/here/demo-project/analysis"
here()
#> [1] "/tmp/RtmpnoXhd8/Rinst301434451937/here/demo-project"
setwd("..")

(I suggest to steer clear from ever changing the working directory. This may not always be feasible, in particular if the working directory is changed by code that you do not control.)

Use project-relative paths

You can build a path relative to the top-level directory in order to build the full path to a file:

here("data", "penguins.csv")
#> [1] "/tmp/RtmpnoXhd8/Rinst301434451937/here/demo-project/data/penguins.csv"
readr::read_csv(
  here("data", "penguins.csv"),
  col_types = list(.default = readr::col_guess()),
  n_max = 3
)
#> # A tibble: 3 x 8
#>   species island bill_length_mm bill_depth_mm flipper_length_… body_mass_g sex  
#>   <chr>   <chr>           <dbl>         <dbl>            <dbl>       <dbl> <chr>
#> 1 Adelie  Torge…           39.1          18.7              181        3750 male 
#> 2 Adelie  Torge…           39.5          17.4              186        3800 fema…
#> 3 Adelie  Torge…           40.3          18                195        3250 fema…
#> # … with 1 more variable: year <dbl>

This works regardless of where the associated source file lives inside your project. With here(), the path will always be relative to the top-level project directory.

here() works very similarly to file.path() or fs::path(), you can pass path components or entire subpaths:

here("data/penguins.csv")
#> [1] "/tmp/RtmpnoXhd8/Rinst301434451937/here/demo-project/data/penguins.csv"

As seen above, here() returns absolute paths (starting with /, <drive letter>:\ or \\). This makes it safe to pass these paths to other functions, even if the working directory is changed along the way.

As of version 1.0.0, absolute paths passed to here() are returned unchanged. This means that you can safely use both absolute and project-relative paths in here().

data_path <- here("data")
here(data_path)
#> [1] "/tmp/RtmpnoXhd8/Rinst301434451937/here/demo-project/data"
here(data_path, "penguins.csv")
#> [1] "/tmp/RtmpnoXhd8/Rinst301434451937/here/demo-project/data/penguins.csv"

Situation report

The dr_here() function explains the reasoning behind choosing the project root:

dr_here()
#> here() starts at /tmp/RtmpnoXhd8/Rinst301434451937/here/demo-project.
#> - This directory contains a file "prepare/penguins.R"
#> - Initial working directory: /tmp/RtmpnoXhd8/Rinst301434451937/here/demo-project
#> - Current working directory: /tmp/RtmpnoXhd8/Rinst301434451937/here/demo-project

The show_reason argument can be set to FALSE to reduce the output to one line:

dr_here(show_reason = FALSE)
#> here() starts at /tmp/RtmpnoXhd8/Rinst301434451937/here/demo-project

What if the working directory is wrong?

The declaration of the active file via here::i_am() also protects against accidentally running the script from a working directory outside of your project. The example below calls here::i_am() from the temporary directory, which is clearly outside our project:

withr::with_dir(tempdir(), {
  print(getwd())
  here::i_am("prepare/penguins.R")
})
#> [1] "/tmp/RtmpHuFWzz"
#> Error: Could not find associated project in working directory or any parent directory.
#> - Path in project: prepare/penguins.R
#> - Current working directory: /tmp/RtmpHuFWzz
#> Please open the project associated with this file and try again.

This can also happen when a file has been renamed or moved without updating the here::i_am() call. In the future, a helper function will assist with installing and updating suitably formatted here::i_am() calls in your scripts and reports.

Conflicts with other packages

Other packages also export a here() function. Loading these packages after loading here masks our here() function:

library(plyr)
#> 
#> Attaching package: 'plyr'
#> The following object is masked from 'package:here':
#> 
#>     here
here()
#> Error in here(): argument "f" is missing, with no default

One way to work around this problem is to use here::here():

here::here()
#> [1] "/tmp/RtmpnoXhd8/Rinst301434451937/here/demo-project"

The conflicted package offers an alternative: it detects that here() is exported from more than one package and allows you to use neither until you indicate a preference.

library(conflicted)
here()
#> Error: [conflicted] `here` found in 2 packages.
#> Either pick the one you want with `::` 
#> * plyr::here
#> * here::here
#> Or declare a preference with `conflict_prefer()`
#> * conflict_prefer("here", "plyr")
#> * conflict_prefer("here", "here")

conflicted::conflict_prefer("here", "here")
#> [conflicted] Will prefer here::here over any other package
here()
#> [1] "/tmp/RtmpnoXhd8/Rinst301434451937/here/demo-project"

Specify a unique identifier

To eliminate potential confusion, here::i_am() accepts a uuid argument. The idea is that each script and report calls here::i_am() very early (in the first 100 lines) with a universally unique identifier. Even if a file location is reused across projects (e.g. two projects contain a “prepare/data.R” file), the files can be identified correctly if the uuid argument in the here::i_am() call is different.

If a uuid argument is passed to here::i_am():

• a project root that contains a file at the specified file path is searched
• the first 100 lines of that file are read
• for the correct file, the here::i_am() call that passes this very uuid is among those 100 lines, and will be matched
• for the wrong file, uuid is not found in the text

Use uuid::UUIDgenerate() to create universally unique identifiers:

uuid::UUIDgenerate()
#> [1] "36f421ac-2d53-46d4-bfad-a0ac96491443"

Ensure that the uuid arguments are actually unique across your files! In the future, a helper function will assist with installing and updating suitably formatted here::i_am() calls in your scripts and reports.

Change project root

It is advisable to start a fresh R session as often as possible, especially before focusing on another project. There still may be legitimate cases when it is desirable to reset the project root.

To start, let’s create a temporary project for demonstration:

temp_project_path <- tempfile()
dir.create(temp_project_path)
scripts_path <- file.path(temp_project_path, "scripts")
dir.create(scripts_path)
script_path <- file.path(scripts_path, "script.R")
writeLines(
  c(
    'here::i_am("scripts/script.R")',
    'print("Hello, world!")'
  ),
  script_path
)
fs::dir_tree(temp_project_path)
#> /tmp/RtmpHuFWzz/file30547d5e00ca
#> └── scripts
#>     └── script.R
writeLines(readLines(script_path))
#> here::i_am("scripts/script.R")
#> print("Hello, world!")

The script.R file contains a call to here::i_am() to declare its location. Running it from the current working directory will fail:

source(script_path, echo = TRUE)
#> 
#> > here::i_am("scripts/script.R")
#> Error: Could not find associated project in working directory or any parent directory.
#> - Path in project: scripts/script.R
#> - Current working directory: /tmp/RtmpnoXhd8/Rinst301434451937/here/demo-project
#> Please open the project associated with this file and try again.

To reset the project root mid-session, change the working directory with setwd(). Now, the subsequent call to here::i_am() from within script.R works:

setwd(temp_project_path)

source(script_path, echo = TRUE)
#> 
#> > here::i_am("scripts/script.R")
#> here() starts at /tmp/RtmpHuFWzz/file30547d5e00ca
#> 
#> > print("Hello, world!")
#> [1] "Hello, world!"

To reiterate: a fresh session is almost always the better, cleaner, safer, and more robust solution. Use this approach only as a last resort.

Under the hood: rprojroot

The here package has a very simple and restricted interface, by design. The underlying logic is provided by the much more powerful rprojroot package. If the default behavior of here does not suit your workflow for one reason or another, the rprojroot package may be a better alternative. It is also recommended to import rprojroot and not here from other packages.

The following example shows how to find an RStudio project starting from a directory:

library(rprojroot)
find_root(is_rstudio_project, file.path(project_path, "analysis"))
#> [1] "/tmp/RtmpnoXhd8/Rinst301434451937/here/demo-project"

Arbitrary criteria can be defined. See vignette("rprojroot", package = "rprojroot") for an introduction.