GenomeInfoDb-package {GenomeInfoDbData}R Documentation

Species and taxonomy ID look up tables

Description

This package contains one mapping object:

Usage

data(specData)

Details

Scripts to generate these files are in GenomeInfoDbData/inst/scripts. All originate from the taxdummp download at ftp://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gz.

Author(s)

Bioconductor Core Team

Examples

data(specData)
sapply(specData, class)   #      tax_id       genus     species
			  #   "integer"    "factor" "character"

subset(specData, c(genus=="Homo" &  species=="sapiens"))$tax_id # [1] 9606

[Package GenomeInfoDbData version 1.2.8 Index]