Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c148' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7982726-fedora-41-x86_64 --chroot fedora-41-x86_64 Version: 0.73 PID: 6744 Logging PID: 6745 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 7982726, 'buildroot_pkgs': [], 'chroot': 'fedora-41-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '30fbe40af27df21043154dec5d8681cdaa8ff489', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-rtracklayer', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-rtracklayer', 'package_version': '1.62.0-3', 'project_dirname': 'openblas-0.3.23', 'project_name': 'openblas-0.3.23', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-41-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/msuchy', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'submitter': 'https://src.fedoraproject.org/user/msuchy', 'tags': [], 'task_id': '7982726-fedora-41-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-rtracklayer /var/lib/copr-rpmbuild/workspace/workdir-2y6w1hzs/R-rtracklayer --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-rtracklayer', '/var/lib/copr-rpmbuild/workspace/workdir-2y6w1hzs/R-rtracklayer', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-2y6w1hzs/R-rtracklayer'... Running: git checkout 30fbe40af27df21043154dec5d8681cdaa8ff489 -- cmd: ['git', 'checkout', '30fbe40af27df21043154dec5d8681cdaa8ff489', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-2y6w1hzs/R-rtracklayer rc: 0 stdout: stderr: Note: switching to '30fbe40af27df21043154dec5d8681cdaa8ff489'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 30fbe40 automatic import of R-rtracklayer Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-2y6w1hzs/R-rtracklayer rc: 0 stdout: /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading rtracklayer_1.62.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o rtracklayer_1.62.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/R-rtracklayer/rtracklayer_1.62.0.tar.gz/md5/a16a9ca02e49808b38823899860abdb6/rtracklayer_1.62.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 3925k 100 3925k 0 0 32.1M 0 --:--:-- --:--:-- --:--:-- 31.9M INFO: Reading stdout from command: md5sum rtracklayer_1.62.0.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-2y6w1hzs/R-rtracklayer/R-rtracklayer.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-2y6w1hzs/R-rtracklayer --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725501753.224600 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.6 starting (python version = 3.12.1, NVR = mock-5.6-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-2y6w1hzs/R-rtracklayer/R-rtracklayer.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-2y6w1hzs/R-rtracklayer --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1725501753.224600 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-2y6w1hzs/R-rtracklayer/R-rtracklayer.spec) Config(fedora-41-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.6 INFO: Mock Version: 5.6 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1725501753.224600/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:41 INFO: Pulling image: registry.fedoraproject.org/fedora:41 INFO: Copy content of container registry.fedoraproject.org/fedora:41 to /var/lib/mock/fedora-41-x86_64-bootstrap-1725501753.224600/root INFO: Checking that registry.fedoraproject.org/fedora:41 image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:41 with podman image mount INFO: image registry.fedoraproject.org/fedora:41 as /var/lib/containers/storage/overlay/f90a96f734823c955512bea1f3375745a611876676ecdcedd9d21240640f1467/merged INFO: umounting image registry.fedoraproject.org/fedora:41 (/var/lib/containers/storage/overlay/f90a96f734823c955512bea1f3375745a611876676ecdcedd9d21240640f1467/merged) with podman image umount INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1725501753.224600/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.92-6.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 dnf5-5.2.5.0-2.fc41.x86_64 dnf5-plugins-5.2.5.0-2.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: updates 100% | 50.6 KiB/s | 31.4 KiB | 00m01s fedora 100% | 20.1 MiB/s | 35.3 MiB | 00m02s Copr repository 100% | 6.6 MiB/s | 3.4 MiB | 00m01s Additional repo http_kojipkgs_fedorapr 100% | 46.0 MiB/s | 14.2 MiB | 00m00s Repositories loaded. 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B binutils x86_64 2.43.1-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 27.5 MiB build-reproducibility-srpm-macros noarch 0.3.6-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 735.0 B bzip2-libs x86_64 1.0.8-19.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 80.7 KiB ca-certificates noarch 2024.2.68_v8.0.302-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB coreutils-common x86_64 9.5-9.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.2 MiB cracklib x86_64 2.9.11-6.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 238.9 KiB crypto-policies noarch 20240828-1.git5f66e81.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136.9 KiB curl x86_64 8.9.1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 796.2 KiB cyrus-sasl-lib x86_64 2.1.28-27.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB debugedit x86_64 5.0-17.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 199.3 KiB dwz x86_64 0.15-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 290.9 KiB ed x86_64 1.20.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 146.9 KiB efi-srpm-macros noarch 5-12.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.1 KiB elfutils x86_64 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.6 MiB elfutils-debuginfod-client x86_64 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 64.9 KiB elfutils-default-yama-scope noarch 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 KiB elfutils-libelf x86_64 0.191-8.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB elfutils-libs x86_64 0.191-8.fc41 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 139.0 KiB pcre2 x86_64 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 653.5 KiB pcre2-syntax noarch 10.44-1.fc41.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 251.6 KiB perl-srpm-macros noarch 1-56.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0 B pkgconf x86_64 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88.6 KiB pkgconf-m4 noarch 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 989.0 B popt x86_64 1.19-7.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136.9 KiB publicsuffix-list-dafsa noarch 20240107-4.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 67.5 KiB pyproject-srpm-macros noarch 1.14.0-1.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 51.0 KiB qt5-srpm-macros noarch 5.15.14-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 500.0 B qt6-srpm-macros noarch 6.7.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0 B readline x86_64 8.2-11.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 493.1 KiB rpm x86_64 4.19.93-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.1 MiB rpm-build-libs x86_64 4.19.93-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 206.7 KiB rpm-libs x86_64 4.19.93-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 721.9 KiB rpm-sequoia x86_64 1.7.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.4 MiB rust-srpm-macros noarch 26.3-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 KiB setup noarch 2.15.0-5.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.7 KiB sqlite-libs x86_64 3.46.1-1.fc41 fedora 1.4 MiB systemd-libs x86_64 256.5-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 MiB util-linux-core x86_64 2.40.2-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB xxhash-libs x86_64 0.8.2-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88.5 KiB xz-libs x86_64 1:5.6.2-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 214.4 KiB zig-srpm-macros noarch 1-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip x86_64 3.0-41.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 703.2 KiB zlib-ng-compat x86_64 2.1.7-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 134.0 KiB zstd x86_64 1.5.6-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 153 packages Total size of inbound packages is 53 MiB. Need to download 53 MiB. After this operation 180 MiB will be used (install 180 MiB, remove 0 B). [ 1/153] bzip2-0:1.0.8-19.fc41.x86_64 100% | 700.3 KiB/s | 52.5 KiB | 00m00s [ 2/153] cpio-0:2.15-2.fc41.x86_64 100% | 7.1 MiB/s | 285.2 KiB | 00m00s [ 3/153] bash-0:5.2.32-2.fc42.x86_64 100% | 14.0 MiB/s | 1.8 MiB | 00m00s [ 4/153] diffutils-0:3.10-8.fc41.x86_6 100% | 14.9 MiB/s | 397.2 KiB | 00m00s [ 5/153] fedora-release-common-0:42-0. 100% | 1.4 MiB/s | 23.0 KiB | 00m00s [ 6/153] coreutils-0:9.5-9.fc42.x86_64 100% | 7.2 MiB/s | 1.1 MiB | 00m00s [ 7/153] findutils-1:4.10.0-4.fc41.x86 100% | 24.0 MiB/s | 539.8 KiB | 00m00s [ 8/153] glibc-minimal-langpack-0:2.40 100% | 6.4 MiB/s | 124.0 KiB | 00m00s [ 9/153] gawk-0:5.3.0-4.fc41.x86_64 100% | 35.3 MiB/s | 1.1 MiB | 00m00s [ 10/153] grep-0:3.11-9.fc41.x86_64 100% | 12.3 MiB/s | 289.7 KiB | 00m00s [ 11/153] gzip-0:1.13-2.fc41.x86_64 100% | 8.4 MiB/s | 164.1 KiB | 00m00s [ 12/153] info-0:7.1-3.fc41.x86_64 100% | 9.4 MiB/s | 182.5 KiB | 00m00s [ 13/153] patch-0:2.7.6-25.fc41.x86_64 100% | 6.7 MiB/s | 131.0 KiB | 00m00s [ 14/153] redhat-rpm-config-0:294-1.fc4 100% | 4.3 MiB/s | 75.5 KiB | 00m00s [ 15/153] rpm-build-0:4.19.93-1.fc42.x8 100% | 4.1 MiB/s | 75.8 KiB | 00m00s [ 16/153] sed-0:4.9-3.fc41.x86_64 100% | 14.4 MiB/s | 309.3 KiB | 00m00s [ 17/153] shadow-utils-2:4.15.1-9.fc41. 100% | 31.6 MiB/s | 1.3 MiB | 00m00s [ 18/153] unzip-0:6.0-64.fc41.x86_64 100% | 8.2 MiB/s | 184.9 KiB | 00m00s [ 19/153] tar-2:1.35-4.fc41.x86_64 100% | 20.8 MiB/s | 852.1 KiB | 00m00s [ 20/153] which-0:2.21-42.fc41.x86_64 100% | 2.0 MiB/s | 41.6 KiB | 00m00s [ 21/153] util-linux-0:2.40.2-8.fc42.x8 100% | 33.9 MiB/s | 1.1 MiB | 00m00s [ 22/153] xz-1:5.6.2-2.fc41.x86_64 100% | 10.6 MiB/s | 457.8 KiB | 00m00s [ 23/153] fedora-repos-0:42-0.1.noarch 100% | 539.4 KiB/s | 9.2 KiB | 00m00s [ 24/153] coreutils-common-0:9.5-9.fc42 100% | 47.6 MiB/s | 2.1 MiB | 00m00s [ 25/153] libblkid-0:2.40.2-8.fc42.x86_ 100% | 6.1 MiB/s | 125.0 KiB | 00m00s [ 26/153] rpm-0:4.19.93-1.fc42.x86_64 100% | 18.2 MiB/s | 522.2 KiB | 00m00s [ 27/153] libfdisk-0:2.40.2-8.fc42.x86_ 100% | 8.7 MiB/s | 159.6 KiB | 00m00s [ 28/153] libmount-0:2.40.2-8.fc42.x86_ 100% | 9.0 MiB/s | 156.1 KiB | 00m00s [ 29/153] libsmartcols-0:2.40.2-8.fc42. 100% | 4.6 MiB/s | 83.9 KiB | 00m00s [ 30/153] libuuid-0:2.40.2-8.fc42.x86_6 100% | 1.7 MiB/s | 29.0 KiB | 00m00s [ 31/153] fedora-gpg-keys-0:42-0.1.noar 100% | 6.7 MiB/s | 123.3 KiB | 00m00s [ 32/153] util-linux-core-0:2.40.2-8.fc 100% | 20.4 MiB/s | 521.5 KiB | 00m00s [ 33/153] fedora-repos-rawhide-0:42-0.1 100% | 514.3 KiB/s | 8.7 KiB | 00m00s [ 34/153] rpm-libs-0:4.19.93-1.fc42.x86 100% | 15.9 MiB/s | 309.6 KiB | 00m00s [ 35/153] rpm-build-libs-0:4.19.93-1.fc 100% | 5.7 MiB/s | 99.2 KiB | 00m00s [ 36/153] xz-libs-1:5.6.2-2.fc41.x86_64 100% | 5.2 MiB/s | 111.8 KiB | 00m00s [ 37/153] libselinux-0:3.7-5.fc41.x86_6 100% | 4.1 MiB/s | 87.8 KiB | 00m00s [ 38/153] glibc-0:2.40-3.fc41.x86_64 100% | 46.5 MiB/s | 2.2 MiB | 00m00s [ 39/153] libxcrypt-0:4.4.36-7.fc41.x86 100% | 6.4 MiB/s | 118.5 KiB | 00m00s [ 40/153] ncurses-libs-0:6.5-2.20240629 100% | 15.5 MiB/s | 334.0 KiB | 00m00s [ 41/153] audit-libs-0:4.0.2-1.fc41.x86 100% | 5.9 MiB/s | 126.2 KiB | 00m00s [ 42/153] authselect-libs-0:1.5.0-7.fc4 100% | 9.5 MiB/s | 204.9 KiB | 00m00s [ 43/153] systemd-libs-0:256.5-1.fc42.x 100% | 25.5 MiB/s | 730.4 KiB | 00m00s [ 44/153] libcap-ng-0:0.8.5-3.fc41.x86_ 100% | 1.9 MiB/s | 32.6 KiB | 00m00s [ 45/153] pam-libs-0:1.6.1-6.fc42.x86_6 100% | 3.1 MiB/s | 57.2 KiB | 00m00s [ 46/153] pam-0:1.6.1-6.fc42.x86_64 100% | 20.2 MiB/s | 518.0 KiB | 00m00s [ 47/153] readline-0:8.2-11.fc42.x86_64 100% | 11.0 MiB/s | 213.4 KiB | 00m00s [ 48/153] zlib-ng-compat-0:2.1.7-2.fc41 100% | 4.5 MiB/s | 77.8 KiB | 00m00s [ 49/153] bzip2-libs-0:1.0.8-19.fc41.x8 100% | 2.4 MiB/s | 41.1 KiB | 00m00s [ 50/153] libacl-0:2.3.2-2.fc41.x86_64 100% | 1.4 MiB/s | 24.5 KiB | 00m00s [ 51/153] libcap-0:2.70-4.fc41.x86_64 100% | 4.5 MiB/s | 86.7 KiB | 00m00s [ 52/153] libgcc-0:14.2.1-1.fc42.x86_64 100% | 7.2 MiB/s | 132.3 KiB | 00m00s [ 53/153] libattr-0:2.5.2-4.fc41.x86_64 100% | 1.0 MiB/s | 18.2 KiB | 00m00s [ 54/153] libeconf-0:0.6.2-3.fc41.x86_6 100% | 1.8 MiB/s | 32.2 KiB | 00m00s [ 55/153] libsemanage-0:3.7-2.fc41.x86_ 100% | 6.7 MiB/s | 116.3 KiB | 00m00s [ 56/153] setup-0:2.15.0-5.fc41.noarch 100% | 8.0 MiB/s | 148.3 KiB | 00m00s [ 57/153] libzstd-0:1.5.6-2.fc41.x86_64 100% | 15.2 MiB/s | 310.3 KiB | 00m00s [ 58/153] lua-libs-0:5.4.6-6.fc41.x86_6 100% | 7.2 MiB/s | 132.0 KiB | 00m00s [ 59/153] popt-0:1.19-7.fc41.x86_64 100% | 3.2 MiB/s | 59.3 KiB | 00m00s [ 60/153] rpm-sequoia-0:1.7.0-2.fc41.x8 100% | 30.1 MiB/s | 892.5 KiB | 00m00s [ 61/153] elfutils-libelf-0:0.191-8.fc4 100% | 10.1 MiB/s | 207.6 KiB | 00m00s [ 62/153] elfutils-libs-0:0.191-8.fc41. 100% | 12.6 MiB/s | 257.5 KiB | 00m00s [ 63/153] file-libs-0:5.45-7.fc41.x86_6 100% | 26.6 MiB/s | 762.0 KiB | 00m00s [ 64/153] libgomp-0:14.2.1-1.fc42.x86_6 100% | 17.2 MiB/s | 353.0 KiB | 00m00s [ 65/153] debugedit-0:5.0-17.fc41.x86_6 100% | 4.3 MiB/s | 80.1 KiB | 00m00s [ 66/153] elfutils-0:0.191-8.fc41.x86_6 100% | 17.7 MiB/s | 524.4 KiB | 00m00s [ 67/153] file-0:5.45-7.fc41.x86_64 100% | 2.7 MiB/s | 49.1 KiB | 00m00s [ 68/153] libarchive-0:3.7.4-3.fc41.x86 100% | 17.4 MiB/s | 409.2 KiB | 00m00s [ 69/153] binutils-0:2.43.1-1.fc42.x86_ 100% | 58.4 MiB/s | 6.4 MiB | 00m00s [ 70/153] pkgconf-pkg-config-0:2.3.0-1. 100% | 526.9 KiB/s | 10.0 KiB | 00m00s [ 71/153] pkgconf-0:2.3.0-1.fc42.x86_64 100% | 2.5 MiB/s | 45.2 KiB | 00m00s [ 72/153] pkgconf-m4-0:2.3.0-1.fc42.noa 100% | 842.4 KiB/s | 14.3 KiB | 00m00s [ 73/153] libpkgconf-0:2.3.0-1.fc42.x86 100% | 2.2 MiB/s | 38.5 KiB | 00m00s [ 74/153] zstd-0:1.5.6-2.fc41.x86_64 100% | 20.4 MiB/s | 481.5 KiB | 00m00s [ 75/153] curl-0:8.9.1-3.fc42.x86_64 100% | 13.4 MiB/s | 315.3 KiB | 00m00s [ 76/153] ansible-srpm-macros-0:1-16.fc 100% | 1.3 MiB/s | 20.8 KiB | 00m00s [ 77/153] glibc-gconv-extra-0:2.40-3.fc 100% | 43.5 MiB/s | 1.7 MiB | 00m00s [ 78/153] build-reproducibility-srpm-ma 100% | 623.7 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578.2 KiB/s | 9.8 KiB | 00m00s [ 92/153] perl-srpm-macros-0:1-56.fc41. 100% | 472.9 KiB/s | 8.5 KiB | 00m00s [ 93/153] pyproject-srpm-macros-0:1.14. 100% | 789.8 KiB/s | 13.4 KiB | 00m00s [ 94/153] python-srpm-macros-0:3.13-3.f 100% | 1.4 MiB/s | 23.7 KiB | 00m00s [ 95/153] qt6-srpm-macros-0:6.7.2-3.fc4 100% | 536.9 KiB/s | 9.1 KiB | 00m00s [ 96/153] qt5-srpm-macros-0:5.15.14-3.f 100% | 527.8 KiB/s | 9.0 KiB | 00m00s [ 97/153] rust-srpm-macros-0:26.3-3.fc4 100% | 711.7 KiB/s | 12.1 KiB | 00m00s [ 98/153] zig-srpm-macros-0:1-3.fc41.no 100% | 477.8 KiB/s | 8.1 KiB | 00m00s [ 99/153] ed-0:1.20.2-2.fc41.x86_64 100% | 4.7 MiB/s | 81.8 KiB | 00m00s [100/153] zip-0:3.0-41.fc41.x86_64 100% | 12.9 MiB/s | 264.8 KiB | 00m00s [101/153] authselect-0:1.5.0-7.fc41.x86 100% | 6.3 MiB/s | 141.2 KiB | 00m00s [102/153] gdbm-1:1.23-7.fc41.x86_64 100% | 7.6 MiB/s | 147.2 KiB | 00m00s [103/153] gdbm-libs-1:1.23-7.fc41.x86_6 100% | 3.2 MiB/s | 56.3 KiB | 00m00s [104/153] libnsl2-0:2.0.1-2.fc41.x86_64 100% | 1.7 MiB/s | 29.6 KiB | 00m00s [105/153] libpwquality-0:1.4.5-11.fc41. 100% | 5.9 MiB/s | 108.2 KiB | 00m00s [106/153] libtirpc-0:1.3.5-0.fc41.x86_6 100% | 5.1 MiB/s | 94.2 KiB | 00m00s [107/153] ca-certificates-0:2024.2.68_v 100% | 19.3 MiB/s | 868.2 KiB | 00m00s [108/153] crypto-policies-0:20240828-1. 100% | 1.5 MiB/s | 69.9 KiB | 00m00s [109/153] openssl-libs-1:3.2.2-5.fc41.x 100% | 22.2 MiB/s | 2.3 MiB | 00m00s [110/153] ncurses-base-0:6.5-2.20240629 100% | 3.0 MiB/s | 63.8 KiB | 00m00s [111/153] libcom_err-0:1.47.1-3.fc41.x8 100% | 1.4 MiB/s | 26.4 KiB | 00m00s [112/153] krb5-libs-0:1.21.3-2.fc41.x86 100% | 21.6 MiB/s | 753.3 KiB | 00m00s [113/153] libsepol-0:3.7-2.fc41.x86_64 100% | 12.9 MiB/s | 342.2 KiB | 00m00s [114/153] pcre2-0:10.44-1.fc41.1.x86_64 100% | 9.5 MiB/s | 243.1 KiB | 00m00s [115/153] cracklib-0:2.9.11-6.fc41.x86_ 100% | 4.7 MiB/s | 81.7 KiB | 00m00s [116/153] lz4-libs-0:1.10.0-1.fc41.x86_ 100% | 4.1 MiB/s | 70.7 KiB | 00m00s [117/153] libxml2-0:2.12.8-2.fc41.x86_6 100% | 16.0 MiB/s | 687.3 KiB | 00m00s [118/153] keyutils-libs-0:1.6.3-4.fc41. 100% | 1.8 MiB/s | 31.6 KiB | 00m00s [119/153] libverto-0:0.3.2-9.fc41.x86_6 100% | 1.2 MiB/s | 20.7 KiB | 00m00s [120/153] basesystem-0:11-21.fc41.noarc 100% | 460.8 KiB/s | 7.4 KiB | 00m00s [121/153] glibc-common-0:2.40-3.fc41.x8 100% | 12.4 MiB/s | 407.6 KiB | 00m00s [122/153] mpfr-0:4.2.1-5.fc41.x86_64 100% | 4.5 MiB/s | 346.3 KiB | 00m00s [123/153] elfutils-default-yama-scope-0 100% | 723.8 KiB/s | 12.3 KiB | 00m00s [124/153] elfutils-debuginfod-client-0: 100% | 1.9 MiB/s | 37.2 KiB | 00m00s [125/153] filesystem-0:3.18-23.fc41.x86 100% | 9.3 MiB/s | 1.1 MiB | 00m00s [126/153] p11-kit-0:0.25.5-3.fc41.x86_6 100% | 8.0 MiB/s | 477.3 KiB | 00m00s [127/153] libstdc++-0:14.2.1-1.fc42.x86 100% | 11.2 MiB/s | 886.7 KiB | 00m00s [128/153] p11-kit-trust-0:0.25.5-3.fc41 100% | 5.0 MiB/s | 132.1 KiB | 00m00s [129/153] alternatives-0:1.30-1.fc41.x8 100% | 2.4 MiB/s | 42.5 KiB | 00m00s [130/153] jansson-0:2.13.1-10.fc41.x86_ 100% | 2.3 MiB/s | 44.4 KiB | 00m00s [131/153] pcre2-syntax-0:10.44-1.fc41.1 100% | 5.9 MiB/s | 149.9 KiB | 00m00s [132/153] add-determinism-0:0.3.6-1.fc4 100% | 11.6 MiB/s | 851.8 KiB | 00m00s [133/153] libtasn1-0:4.19.0-9.fc41.x86_ 100% | 4.3 MiB/s | 74.2 KiB | 00m00s [134/153] libffi-0:3.4.6-3.fc42.x86_64 100% | 2.4 MiB/s | 40.0 KiB | 00m00s [135/153] fedora-release-0:42-0.3.noarc 100% | 764.2 KiB/s | 12.2 KiB | 00m00s [136/153] gmp-1:6.3.0-2.fc41.x86_64 100% | 9.4 MiB/s | 318.0 KiB | 00m00s [137/153] sqlite-libs-0:3.46.1-1.fc41.x 100% | 652.7 KiB/s | 712.7 KiB | 00m01s [138/153] fedora-release-identity-basic 100% | 765.6 KiB/s | 13.0 KiB | 00m00s [139/153] xxhash-libs-0:0.8.2-3.fc41.x8 100% | 2.1 MiB/s | 37.1 KiB | 00m00s [140/153] libcurl-0:8.9.1-3.fc42.x86_64 100% | 8.8 MiB/s | 362.0 KiB | 00m00s [141/153] libbrotli-0:1.1.0-5.fc41.x86_ 100% | 9.8 MiB/s | 340.5 KiB | 00m00s [142/153] libidn2-0:2.3.7-2.fc41.x86_64 100% | 4.6 MiB/s | 112.6 KiB | 00m00s [143/153] libnghttp2-0:1.63.0-1.fc42.x8 100% | 4.4 MiB/s | 76.7 KiB | 00m00s [144/153] libpsl-0:0.21.5-4.fc41.x86_64 100% | 3.7 MiB/s | 64.1 KiB | 00m00s [145/153] libssh-config-0:0.11.1-1.fc42 100% | 586.6 KiB/s | 9.4 KiB | 00m00s [146/153] libssh-0:0.11.1-1.fc42.x86_64 100% | 8.7 MiB/s | 231.9 KiB | 00m00s [147/153] openldap-0:2.6.8-5.fc41.x86_6 100% | 7.3 MiB/s | 255.6 KiB | 00m00s [148/153] libevent-0:2.1.12-14.fc41.x86 100% | 7.9 MiB/s | 257.5 KiB | 00m00s [149/153] cyrus-sasl-lib-0:2.1.28-27.fc 100% | 10.3 MiB/s | 794.9 KiB | 00m00s [150/153] libtool-ltdl-0:2.4.7-12.fc41. 100% | 2.0 MiB/s | 35.6 KiB | 00m00s [151/153] publicsuffix-list-dafsa-0:202 100% | 3.2 MiB/s | 58.3 KiB | 00m00s [152/153] libunistring-0:1.1-8.fc41.x86 100% | 9.7 MiB/s | 544.8 KiB | 00m00s [153/153] gdb-minimal-0:15.1-1.fc42.x86 100% | 12.4 MiB/s | 4.3 MiB | 00m00s -------------------------------------------------------------------------------- [153/153] Total 100% | 26.8 MiB/s | 52.6 MiB | 00m02s Running transaction Importing PGP key 0xE99D6AD1: Userid : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. [ 1/155] Verify package files 100% | 780.0 B/s | 153.0 B | 00m00s >>> Running pre-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64 >>> Stop pre-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64 [ 2/155] Prepare transaction 100% | 1.9 KiB/s | 153.0 B | 00m00s [ 3/155] Installing libgcc-0:14.2.1-1. 100% | 134.9 MiB/s | 276.3 KiB | 00m00s >>> Running post-install scriptlet: libgcc-0:14.2.1-1.fc42.x86_64 >>> Stop post-install scriptlet: libgcc-0:14.2.1-1.fc42.x86_64 [ 4/155] Installing publicsuffix-list- 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 5/155] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 6/155] Installing fedora-release-ide 100% | 0.0 B/s | 952.0 B | 00m00s [ 7/155] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 8/155] Installing fedora-gpg-keys-0: 100% | 21.0 MiB/s | 172.2 KiB | 00m00s [ 9/155] Installing fedora-repos-0:42- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/155] Installing fedora-release-com 100% | 11.6 MiB/s | 23.7 KiB | 00m00s [ 11/155] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 12/155] Installing setup-0:2.15.0-5.f 100% | 50.6 MiB/s | 726.1 KiB | 00m00s >>> Running post-install scriptlet: setup-0:2.15.0-5.fc41.noarch >>> Stop post-install scriptlet: setup-0:2.15.0-5.fc41.noarch [ 13/155] Installing filesystem-0:3.18- 100% | 1.7 MiB/s | 212.5 KiB | 00m00s [ 14/155] Installing basesystem-0:11-21 100% | 0.0 B/s | 124.0 B | 00m00s [ 15/155] Installing pcre2-syntax-0:10. 100% | 124.1 MiB/s | 254.1 KiB | 00m00s [ 16/155] Installing ncurses-base-0:6.5 100% | 38.2 MiB/s | 351.7 KiB | 00m00s [ 17/155] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 18/155] Installing ncurses-libs-0:6.5 100% | 159.8 MiB/s | 981.8 KiB | 00m00s >>> Running pre-install scriptlet: glibc-0:2.40-3.fc41.x86_64 >>> Stop pre-install scriptlet: glibc-0:2.40-3.fc41.x86_64 warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [ 19/155] Installing glibc-0:2.40-3.fc4 100% | 121.4 MiB/s | 6.7 MiB | 00m00s >>> Running post-install scriptlet: glibc-0:2.40-3.fc41.x86_64 >>> Stop post-install scriptlet: glibc-0:2.40-3.fc41.x86_64 [ 20/155] Installing bash-0:5.2.32-2.fc 100% | 263.5 MiB/s | 8.2 MiB | 00m00s >>> Running post-install scriptlet: bash-0:5.2.32-2.fc42.x86_64 >>> Stop post-install scriptlet: bash-0:5.2.32-2.fc42.x86_64 [ 21/155] Installing glibc-common-0:2.4 100% | 130.9 MiB/s | 1.0 MiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [ 22/155] Installing glibc-gconv-extra- 100% | 130.6 MiB/s | 8.1 MiB | 00m00s >>> Running post-install scriptlet: glibc-gconv-extra-0:2.40-3.fc41.x86_64 >>> Stop post-install scriptlet: glibc-gconv-extra-0:2.40-3.fc41.x86_64 [ 23/155] Installing zlib-ng-compat-0:2 100% | 65.8 MiB/s | 134.8 KiB | 00m00s [ 24/155] Installing xz-libs-1:5.6.2-2. 100% | 105.2 MiB/s | 215.5 KiB | 00m00s [ 25/155] Installing bzip2-libs-0:1.0.8 100% | 79.9 MiB/s | 81.8 KiB | 00m00s [ 26/155] Installing libuuid-0:2.40.2-8 100% | 41.5 MiB/s | 42.5 KiB | 00m00s [ 27/155] Installing readline-0:8.2-11. 100% | 161.2 MiB/s | 495.3 KiB | 00m00s [ 28/155] Installing popt-0:1.19-7.fc41 100% | 35.0 MiB/s | 143.5 KiB | 00m00s [ 29/155] Installing libblkid-0:2.40.2- 100% | 128.7 MiB/s | 263.6 KiB | 00m00s [ 30/155] Installing libxcrypt-0:4.4.36 100% | 131.6 MiB/s | 269.5 KiB | 00m00s [ 31/155] Installing libattr-0:2.5.2-4. 100% | 28.8 MiB/s | 29.5 KiB | 00m00s [ 32/155] Installing libacl-0:2.3.2-2.f 100% | 39.8 MiB/s | 40.7 KiB | 00m00s [ 33/155] Installing libzstd-0:1.5.6-2. 100% | 259.5 MiB/s | 797.2 KiB | 00m00s [ 34/155] Installing elfutils-libelf-0: 100% | 233.8 MiB/s | 1.2 MiB | 00m00s [ 35/155] Installing libstdc++-0:14.2.1 100% | 277.0 MiB/s | 2.8 MiB | 00m00s [ 36/155] Installing gmp-1:6.3.0-2.fc41 100% | 264.9 MiB/s | 813.7 KiB | 00m00s [ 37/155] Installing libeconf-0:0.6.2-3 100% | 58.3 MiB/s | 59.7 KiB | 00m00s [ 38/155] Installing gdbm-libs-1:1.23-7 100% | 120.7 MiB/s | 123.6 KiB | 00m00s [ 39/155] Installing mpfr-0:4.2.1-5.fc4 100% | 203.5 MiB/s | 833.7 KiB | 00m00s [ 40/155] Installing gawk-0:5.3.0-4.fc4 100% | 192.4 MiB/s | 1.7 MiB | 00m00s [ 41/155] Installing dwz-0:0.15-7.fc41. 100% | 142.7 MiB/s | 292.3 KiB | 00m00s [ 42/155] Installing unzip-0:6.0-64.fc4 100% | 190.6 MiB/s | 390.3 KiB | 00m00s [ 43/155] Installing file-libs-0:5.45-7 100% | 473.0 MiB/s | 9.9 MiB | 00m00s [ 44/155] Installing file-0:5.45-7.fc41 100% | 5.7 MiB/s | 105.0 KiB | 00m00s >>> Running pre-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42. >>> Stop pre-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42.noa [ 45/155] Installing crypto-policies-0: 100% | 15.9 MiB/s | 163.2 KiB | 00m00s >>> Running post-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42 >>> Stop post-install scriptlet: crypto-policies-0:20240828-1.git5f66e81.fc42.no [ 46/155] Installing libsmartcols-0:2.4 100% | 177.1 MiB/s | 181.4 KiB | 00m00s [ 47/155] Installing libcap-ng-0:0.8.5- 100% | 69.4 MiB/s | 71.0 KiB | 00m00s [ 48/155] Installing audit-libs-0:4.0.2 100% | 162.8 MiB/s | 333.4 KiB | 00m00s [ 49/155] Installing pam-libs-0:1.6.1-6 100% | 69.0 MiB/s | 141.3 KiB | 00m00s [ 50/155] Installing libcap-0:2.70-4.fc 100% | 55.0 MiB/s | 225.2 KiB | 00m00s [ 51/155] Installing systemd-libs-0:256 100% | 254.2 MiB/s | 2.0 MiB | 00m00s [ 52/155] Installing lua-libs-0:5.4.6-6 100% | 279.5 MiB/s | 286.2 KiB | 00m00s [ 53/155] Installing libcom_err-0:1.47. 100% | 66.7 MiB/s | 68.3 KiB | 00m00s [ 54/155] Installing libsepol-0:3.7-2.f 100% | 266.5 MiB/s | 818.8 KiB | 00m00s [ 55/155] Installing pcre2-0:10.44-1.fc 100% | 319.8 MiB/s | 654.9 KiB | 00m00s [ 56/155] Installing libselinux-0:3.7-5 100% | 178.0 MiB/s | 182.3 KiB | 00m00s [ 57/155] Installing sed-0:4.9-3.fc41.x 100% | 121.3 MiB/s | 869.7 KiB | 00m00s [ 58/155] Installing grep-0:3.11-9.fc41 100% | 125.4 MiB/s | 1.0 MiB | 00m00s [ 59/155] Installing findutils-1:4.10.0 100% | 185.8 MiB/s | 1.9 MiB | 00m00s [ 60/155] Installing xz-1:5.6.2-2.fc41. 100% | 133.9 MiB/s | 1.2 MiB | 00m00s [ 61/155] Installing libmount-0:2.40.2- 100% | 174.3 MiB/s | 356.9 KiB | 00m00s [ 62/155] Installing lz4-libs-0:1.10.0- 100% | 143.1 MiB/s | 146.6 KiB | 00m00s [ 63/155] Installing alternatives-0:1.3 100% | 66.3 MiB/s | 67.9 KiB | 00m00s [ 64/155] Installing libtasn1-0:4.19.0- 100% | 173.3 MiB/s | 177.5 KiB | 00m00s [ 65/155] Installing libunistring-0:1.1 100% | 288.5 MiB/s | 1.7 MiB | 00m00s [ 66/155] Installing libidn2-0:2.3.7-2. 100% | 81.8 MiB/s | 335.1 KiB | 00m00s [ 67/155] Installing libpsl-0:0.21.5-4. 100% | 79.7 MiB/s | 81.7 KiB | 00m00s [ 68/155] Installing zstd-0:1.5.6-2.fc4 100% | 281.9 MiB/s | 1.7 MiB | 00m00s [ 69/155] Installing util-linux-core-0: 100% | 138.9 MiB/s | 1.5 MiB | 00m00s [ 70/155] Installing tar-2:1.35-4.fc41. 100% | 227.6 MiB/s | 3.0 MiB | 00m00s [ 71/155] Installing libsemanage-0:3.7- 100% | 96.1 MiB/s | 295.2 KiB | 00m00s [ 72/155] Installing shadow-utils-2:4.1 100% | 131.1 MiB/s | 4.2 MiB | 00m00s [ 73/155] Installing zip-0:3.0-41.fc41. 100% | 172.6 MiB/s | 707.1 KiB | 00m00s [ 74/155] Installing gdbm-1:1.23-7.fc41 100% | 113.7 MiB/s | 465.8 KiB | 00m00s [ 75/155] Installing cyrus-sasl-lib-0:2 100% | 256.2 MiB/s | 2.3 MiB | 00m00s [ 76/155] Installing libfdisk-0:2.40.2- 100% | 177.7 MiB/s | 364.0 KiB | 00m00s [ 77/155] Installing bzip2-0:1.0.8-19.f 100% | 48.9 MiB/s | 100.2 KiB | 00m00s [ 78/155] Installing libxml2-0:2.12.8-2 100% | 244.6 MiB/s | 1.7 MiB | 00m00s [ 79/155] Installing sqlite-libs-0:3.46 100% | 285.9 MiB/s | 1.4 MiB | 00m00s [ 80/155] Installing add-determinism-0: 100% | 280.7 MiB/s | 2.2 MiB | 00m00s [ 81/155] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 82/155] Installing ed-0:1.20.2-2.fc41 100% | 145.7 MiB/s | 149.2 KiB | 00m00s [ 83/155] Installing patch-0:2.7.6-25.f 100% | 131.0 MiB/s | 268.2 KiB | 00m00s [ 84/155] Installing elfutils-default-y 100% | 170.2 KiB/s | 2.0 KiB | 00m00s >>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.n >>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.191-8.fc41.noar [ 85/155] Installing elfutils-libs-0:0. 100% | 158.2 MiB/s | 648.0 KiB | 00m00s [ 86/155] Installing cpio-0:2.15-2.fc41 100% | 157.1 MiB/s | 1.1 MiB | 00m00s [ 87/155] Installing diffutils-0:3.10-8 100% | 176.7 MiB/s | 1.6 MiB | 00m00s [ 88/155] Installing libgomp-0:14.2.1-1 100% | 256.2 MiB/s | 524.8 KiB | 00m00s [ 89/155] Installing libpkgconf-0:2.3.0 100% | 77.5 MiB/s | 79.3 KiB | 00m00s [ 90/155] Installing pkgconf-0:2.3.0-1. 100% | 89.0 MiB/s | 91.1 KiB | 00m00s [ 91/155] Installing keyutils-libs-0:1. 100% | 54.5 MiB/s | 55.8 KiB | 00m00s [ 92/155] Installing libverto-0:0.3.2-9 100% | 30.5 MiB/s | 31.3 KiB | 00m00s [ 93/155] Installing jansson-0:2.13.1-1 100% | 87.6 MiB/s | 89.7 KiB | 00m00s [ 94/155] Installing libffi-0:3.4.6-3.f 100% | 85.7 MiB/s | 87.8 KiB | 00m00s [ 95/155] Installing p11-kit-0:0.25.5-3 100% | 157.7 MiB/s | 2.2 MiB | 00m00s [ 96/155] Installing p11-kit-trust-0:0. 100% | 27.4 MiB/s | 393.1 KiB | 00m00s >>> Running post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.x86_64 >>> Stop post-install scriptlet: p11-kit-trust-0:0.25.5-3.fc41.x86_64 [ 97/155] Installing xxhash-libs-0:0.8. 100% | 87.8 MiB/s | 89.9 KiB | 00m00s [ 98/155] Installing libbrotli-0:1.1.0- 100% | 205.0 MiB/s | 839.9 KiB | 00m00s [ 99/155] Installing libnghttp2-0:1.63. 100% | 167.2 MiB/s | 171.2 KiB | 00m00s [100/155] Installing libtool-ltdl-0:2.4 100% | 65.7 MiB/s | 67.3 KiB | 00m00s [101/155] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [102/155] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [103/155] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [104/155] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [105/155] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [106/155] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [107/155] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [108/155] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [109/155] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [110/155] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [111/155] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [112/155] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [113/155] Installing pkgconf-m4-0:2.3.0 100% | 0.0 B/s | 14.8 KiB | 00m00s [114/155] Installing pkgconf-pkg-config 100% | 1.7 MiB/s | 1.8 KiB | 00m00s [115/155] Installing coreutils-common-0 100% | 254.3 MiB/s | 11.2 MiB | 00m00s [116/155] Installing openssl-libs-1:3.2 100% | 313.0 MiB/s | 7.8 MiB | 00m00s [117/155] Installing coreutils-0:9.5-9. 100% | 158.8 MiB/s | 5.7 MiB | 00m00s >>> Running pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.n >>> Stop pre-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noar [118/155] Installing ca-certificates-0: 100% | 2.5 MiB/s | 2.4 MiB | 00m01s >>> Running post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41. >>> Stop post-install scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41.noa [119/155] Installing krb5-libs-0:1.21.3 100% | 191.6 MiB/s | 2.3 MiB | 00m00s [120/155] Installing libarchive-0:3.7.4 100% | 225.7 MiB/s | 924.6 KiB | 00m00s [121/155] Installing libtirpc-0:1.3.5-0 100% | 99.8 MiB/s | 204.5 KiB | 00m00s [122/155] Installing gzip-0:1.13-2.fc41 100% | 96.3 MiB/s | 394.6 KiB | 00m00s [123/155] Installing authselect-libs-0: 100% | 90.4 MiB/s | 833.2 KiB | 00m00s [124/155] Installing cracklib-0:2.9.11- 100% | 34.9 MiB/s | 250.3 KiB | 00m00s [125/155] Installing libpwquality-0:1.4 100% | 52.5 MiB/s | 430.1 KiB | 00m00s [126/155] Installing libnsl2-0:2.0.1-2. 100% | 57.7 MiB/s | 59.1 KiB | 00m00s [127/155] Installing pam-0:1.6.1-6.fc42 100% | 81.6 MiB/s | 1.9 MiB | 00m00s [128/155] Installing libssh-0:0.11.1-1. 100% | 186.1 MiB/s | 571.7 KiB | 00m00s [129/155] Installing rpm-sequoia-0:1.7. 100% | 263.0 MiB/s | 2.4 MiB | 00m00s [130/155] Installing rpm-libs-0:4.19.93 100% | 176.6 MiB/s | 723.4 KiB | 00m00s [131/155] Installing rpm-build-libs-0:4 100% | 202.6 MiB/s | 207.5 KiB | 00m00s [132/155] Installing libevent-0:2.1.12- 100% | 219.6 MiB/s | 899.5 KiB | 00m00s [133/155] Installing openldap-0:2.6.8-5 100% | 158.2 MiB/s | 648.0 KiB | 00m00s [134/155] Installing libcurl-0:8.9.1-3. 100% | 200.0 MiB/s | 819.2 KiB | 00m00s [135/155] Installing elfutils-debuginfo 100% | 32.7 MiB/s | 66.9 KiB | 00m00s [136/155] Installing binutils-0:2.43.1- 100% | 255.0 MiB/s | 27.5 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.43.1-1.fc42.x86_64 >>> Stop post-install scriptlet: binutils-0:2.43.1-1.fc42.x86_64 [137/155] Installing elfutils-0:0.191-8 100% | 213.4 MiB/s | 2.6 MiB | 00m00s [138/155] Installing gdb-minimal-0:15.1 100% | 309.3 MiB/s | 13.0 MiB | 00m00s [139/155] Installing debugedit-0:5.0-17 100% | 98.6 MiB/s | 202.0 KiB | 00m00s [140/155] Installing curl-0:8.9.1-3.fc4 100% | 35.5 MiB/s | 798.6 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.93-1.fc42.x86_64 >>> Stop pre-install scriptlet: rpm-0:4.19.93-1.fc42.x86_64 [141/155] Installing rpm-0:4.19.93-1.fc 100% | 92.6 MiB/s | 2.5 MiB | 00m00s [142/155] Installing efi-srpm-macros-0: 100% | 40.2 MiB/s | 41.2 KiB | 00m00s [143/155] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [144/155] Installing zig-srpm-macros-0: 100% | 1.6 MiB/s | 1.7 KiB | 00m00s [145/155] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [146/155] Installing forge-srpm-macros- 100% | 39.4 MiB/s | 40.4 KiB | 00m00s [147/155] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [148/155] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [149/155] Installing redhat-rpm-config- 100% | 62.8 MiB/s | 192.9 KiB | 00m00s [150/155] Installing rpm-build-0:4.19.9 100% | 49.5 MiB/s | 202.8 KiB | 00m00s [151/155] Installing pyproject-srpm-mac 100% | 2.4 MiB/s | 2.5 KiB | 00m00s [152/155] Installing util-linux-0:2.40. 100% | 86.4 MiB/s | 3.7 MiB | 00m00s >>> Running post-install scriptlet: util-linux-0:2.40.2-8.fc42.x86_64 >>> Stop post-install scriptlet: util-linux-0:2.40.2-8.fc42.x86_64 [153/155] Installing authselect-0:1.5.0 100% | 38.6 MiB/s | 157.9 KiB | 00m00s [154/155] Installing which-0:2.21-42.fc 100% | 40.2 MiB/s | 82.4 KiB | 00m00s warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [155/155] Installing info-0:7.1-3.fc41. 100% | 275.6 KiB/s | 362.2 KiB | 00m01s >>> Running post-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64 >>> Stop post-transaction scriptlet: filesystem-0:3.18-23.fc41.x86_64 >>> Running post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.f >>> Stop post-transaction scriptlet: ca-certificates-0:2024.2.68_v8.0.302-3.fc41 >>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.x86_64 >>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-7.fc41.x86_64 >>> Running post-transaction scriptlet: rpm-0:4.19.93-1.fc42.x86_64 >>> Stop post-transaction scriptlet: rpm-0:4.19.93-1.fc42.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.40-3.fc41.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-3.fc41.x86_64 Complete! Warning: skipped PGP checks for 152 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.6-1.fc41.x86_64 alternatives-1.30-1.fc41.x86_64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.2-1.fc41.x86_64 authselect-1.5.0-7.fc41.x86_64 authselect-libs-1.5.0-7.fc41.x86_64 basesystem-11-21.fc41.noarch bash-5.2.32-2.fc42.x86_64 binutils-2.43.1-1.fc42.x86_64 build-reproducibility-srpm-macros-0.3.6-1.fc41.noarch bzip2-1.0.8-19.fc41.x86_64 bzip2-libs-1.0.8-19.fc41.x86_64 ca-certificates-2024.2.68_v8.0.302-3.fc41.noarch coreutils-9.5-9.fc42.x86_64 coreutils-common-9.5-9.fc42.x86_64 cpio-2.15-2.fc41.x86_64 cracklib-2.9.11-6.fc41.x86_64 crypto-policies-20240828-1.git5f66e81.fc42.noarch curl-8.9.1-3.fc42.x86_64 cyrus-sasl-lib-2.1.28-27.fc41.x86_64 debugedit-5.0-17.fc41.x86_64 diffutils-3.10-8.fc41.x86_64 dwz-0.15-7.fc41.x86_64 ed-1.20.2-2.fc41.x86_64 efi-srpm-macros-5-12.fc41.noarch elfutils-0.191-8.fc41.x86_64 elfutils-debuginfod-client-0.191-8.fc41.x86_64 elfutils-default-yama-scope-0.191-8.fc41.noarch elfutils-libelf-0.191-8.fc41.x86_64 elfutils-libs-0.191-8.fc41.x86_64 fedora-gpg-keys-42-0.1.noarch fedora-release-42-0.3.noarch fedora-release-common-42-0.3.noarch fedora-release-identity-basic-42-0.3.noarch fedora-repos-42-0.1.noarch fedora-repos-rawhide-42-0.1.noarch file-5.45-7.fc41.x86_64 file-libs-5.45-7.fc41.x86_64 filesystem-3.18-23.fc41.x86_64 findutils-4.10.0-4.fc41.x86_64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.3.2-1.fc41.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.x86_64 gdb-minimal-15.1-1.fc42.x86_64 gdbm-1.23-7.fc41.x86_64 gdbm-libs-1.23-7.fc41.x86_64 ghc-srpm-macros-1.9.1-2.fc41.noarch glibc-2.40-3.fc41.x86_64 glibc-common-2.40-3.fc41.x86_64 glibc-gconv-extra-2.40-3.fc41.x86_64 glibc-minimal-langpack-2.40-3.fc41.x86_64 gmp-6.3.0-2.fc41.x86_64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-3.fc41.noarch gpg-pubkey-e99d6ad1-64d2612c grep-3.11-9.fc41.x86_64 gzip-1.13-2.fc41.x86_64 info-7.1-3.fc41.x86_64 jansson-2.13.1-10.fc41.x86_64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.x86_64 krb5-libs-1.21.3-2.fc41.x86_64 libacl-2.3.2-2.fc41.x86_64 libarchive-3.7.4-3.fc41.x86_64 libattr-2.5.2-4.fc41.x86_64 libblkid-2.40.2-8.fc42.x86_64 libbrotli-1.1.0-5.fc41.x86_64 libcap-2.70-4.fc41.x86_64 libcap-ng-0.8.5-3.fc41.x86_64 libcom_err-1.47.1-3.fc41.x86_64 libcurl-8.9.1-3.fc42.x86_64 libeconf-0.6.2-3.fc41.x86_64 libevent-2.1.12-14.fc41.x86_64 libfdisk-2.40.2-8.fc42.x86_64 libffi-3.4.6-3.fc42.x86_64 libgcc-14.2.1-1.fc42.x86_64 libgomp-14.2.1-1.fc42.x86_64 libidn2-2.3.7-2.fc41.x86_64 libmount-2.40.2-8.fc42.x86_64 libnghttp2-1.63.0-1.fc42.x86_64 libnsl2-2.0.1-2.fc41.x86_64 libpkgconf-2.3.0-1.fc42.x86_64 libpsl-0.21.5-4.fc41.x86_64 libpwquality-1.4.5-11.fc41.x86_64 libselinux-3.7-5.fc41.x86_64 libsemanage-3.7-2.fc41.x86_64 libsepol-3.7-2.fc41.x86_64 libsmartcols-2.40.2-8.fc42.x86_64 libssh-0.11.1-1.fc42.x86_64 libssh-config-0.11.1-1.fc42.noarch libstdc++-14.2.1-1.fc42.x86_64 libtasn1-4.19.0-9.fc41.x86_64 libtirpc-1.3.5-0.fc41.x86_64 libtool-ltdl-2.4.7-12.fc41.x86_64 libunistring-1.1-8.fc41.x86_64 libuuid-2.40.2-8.fc42.x86_64 libverto-0.3.2-9.fc41.x86_64 libxcrypt-4.4.36-7.fc41.x86_64 libxml2-2.12.8-2.fc41.x86_64 libzstd-1.5.6-2.fc41.x86_64 lua-libs-5.4.6-6.fc41.x86_64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.x86_64 mpfr-4.2.1-5.fc41.x86_64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.x86_64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-5.fc41.x86_64 openssl-libs-3.2.2-5.fc41.x86_64 p11-kit-0.25.5-3.fc41.x86_64 p11-kit-trust-0.25.5-3.fc41.x86_64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.6.1-6.fc42.x86_64 pam-libs-1.6.1-6.fc42.x86_64 patch-2.7.6-25.fc41.x86_64 pcre2-10.44-1.fc41.1.x86_64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc42.x86_64 pkgconf-m4-2.3.0-1.fc42.noarch pkgconf-pkg-config-2.3.0-1.fc42.x86_64 popt-1.19-7.fc41.x86_64 publicsuffix-list-dafsa-20240107-4.fc41.noarch pyproject-srpm-macros-1.14.0-1.fc41.noarch python-srpm-macros-3.13-3.fc41.noarch qt5-srpm-macros-5.15.14-3.fc41.noarch qt6-srpm-macros-6.7.2-3.fc41.noarch readline-8.2-11.fc42.x86_64 redhat-rpm-config-294-1.fc42.noarch rpm-4.19.93-1.fc42.x86_64 rpm-build-4.19.93-1.fc42.x86_64 rpm-build-libs-4.19.93-1.fc42.x86_64 rpm-libs-4.19.93-1.fc42.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 rust-srpm-macros-26.3-3.fc42.noarch sed-4.9-3.fc41.x86_64 setup-2.15.0-5.fc41.noarch shadow-utils-4.15.1-9.fc41.x86_64 sqlite-libs-3.46.1-1.fc41.x86_64 systemd-libs-256.5-1.fc42.x86_64 tar-1.35-4.fc41.x86_64 unzip-6.0-64.fc41.x86_64 util-linux-2.40.2-8.fc42.x86_64 util-linux-core-2.40.2-8.fc42.x86_64 which-2.21-42.fc41.x86_64 xxhash-libs-0.8.2-3.fc41.x86_64 xz-5.6.2-2.fc41.x86_64 xz-libs-5.6.2-2.fc41.x86_64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.x86_64 zlib-ng-compat-2.1.7-2.fc41.x86_64 zstd-1.5.6-2.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1725408000 Wrote: /builddir/build/SRPMS/R-rtracklayer-1.62.0-3.fc42.src.rpm Finish: rpmbuild -bs cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-41-x86_64-1725501753.224600/root/var/log’: No such file or directory INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-x86_64-1725501753.224600/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-2y6w1hzs/R-rtracklayer/R-rtracklayer.spec) Config(child) 0 minutes 33 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-rtracklayer-1.62.0-3.fc42.src.rpm) Config(fedora-41-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1725501753.224600/root. INFO: reusing tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1725501753.224600/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1725501753.224600/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.92-6.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 dnf5-5.2.5.0-2.fc41.x86_64 dnf5-plugins-5.2.5.0-2.fc41.x86_64 Finish: chroot init Start: build phase for R-rtracklayer-1.62.0-3.fc42.src.rpm Start: build setup for R-rtracklayer-1.62.0-3.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1725408000 Wrote: /builddir/build/SRPMS/R-rtracklayer-1.62.0-3.fc42.src.rpm Updating and loading repositories: Additional repo http_kojipkgs_fedorapr 100% | 69.6 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 49.6 KiB/s | 1.5 KiB | 00m00s updates 100% | 765.1 KiB/s | 28.3 KiB | 00m00s fedora 100% | 1.0 MiB/s | 25.6 KiB | 00m00s Copr repository 100% | 17.8 MiB/s | 3.4 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: R-BiocGenerics noarch 0.42.0-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 MiB R-BiocIO noarch 1.6.0-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 876.3 KiB R-Biostrings-devel x86_64 2.64.1-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 16.4 KiB R-GenomeInfoDb noarch 1.32.3-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.9 MiB R-GenomicAlignments x86_64 1.32.1-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.1 MiB R-GenomicRanges x86_64 1.48.0-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.6 MiB R-IRanges-devel x86_64 2.30.1-9.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 10.2 KiB R-RCurl x86_64 1.98.1.8-9.fc42 copr_base 2.1 MiB R-Rsamtools x86_64 2.18.0-2.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.2 MiB R-S4Vectors-devel x86_64 0.40.2-2.fc41 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Need to download 562 MiB. After this operation 1 GiB will be used (install 1 GiB, remove 0 B). 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texlive-babel-11:s 100% | 32.2 MiB/s | 2.2 MiB | 00m00s [265/721] Installing texlive-etex-pkg-1 100% | 0.0 B/s | 19.0 KiB | 00m00s [266/721] Installing texlive-etoolbox-1 100% | 66.1 MiB/s | 67.7 KiB | 00m00s [267/721] Installing texlive-auxhook-11 100% | 296.1 MiB/s | 303.2 KiB | 00m00s [268/721] Installing texlive-etexcmds-1 100% | 314.7 MiB/s | 322.3 KiB | 00m00s [269/721] Installing texlive-latex-font 100% | 60.6 MiB/s | 124.2 KiB | 00m00s [270/721] Installing texlive-pdfescape- 100% | 368.3 MiB/s | 377.2 KiB | 00m00s [271/721] Installing texlive-fp-11:svn4 100% | 124.9 MiB/s | 127.9 KiB | 00m00s [272/721] Installing texlive-hologo-11: 100% | 325.3 MiB/s | 666.1 KiB | 00m00s [273/721] Installing texlive-ragged2e-1 100% | 358.1 MiB/s | 733.3 KiB | 00m00s [274/721] Installing texlive-setspace-1 100% | 0.0 B/s | 22.4 KiB | 00m00s [275/721] Installing texlive-bigintcalc 100% | 252.4 MiB/s | 516.8 KiB | 00m00s [276/721] Installing texlive-graphics-c 100% | 3.8 MiB/s | 3.9 KiB | 00m00s [277/721] Installing texlive-graphics-1 100% | 125.6 MiB/s | 128.7 KiB | 00m00s [278/721] Installing texlive-tools-11:s 100% | 134.0 MiB/s | 411.7 KiB | 00m00s [279/721] Installing texlive-xkeyval-11 100% | 69.9 MiB/s | 71.6 KiB | 00m00s [280/721] Installing texlive-geometry-1 100% | 49.1 MiB/s | 50.2 KiB | 00m00s [281/721] Installing texlive-caption-11 100% | 297.1 MiB/s | 912.6 KiB | 00m00s [282/721] Installing texlive-colortbl-1 100% | 0.0 B/s | 21.8 KiB | 00m00s [283/721] Installing texlive-hycolor-11 100% | 201.7 MiB/s | 413.1 KiB | 00m00s [284/721] Installing texlive-intcalc-11 100% | 230.9 MiB/s | 472.8 KiB | 00m00s [285/721] Installing texlive-kvsetkeys- 100% | 418.8 MiB/s | 428.8 KiB | 00m00s [286/721] Installing texlive-l3backend- 100% | 369.0 MiB/s | 1.1 MiB | 00m00s [287/721] Installing texlive-letltxmacr 100% | 305.3 MiB/s | 312.6 KiB | 00m00s [288/721] Installing texlive-natbib-11: 100% | 131.1 MiB/s | 134.2 KiB | 00m00s [289/721] Installing texlive-uniquecoun 100% | 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Installing texlive-ifplatform 100% | 0.0 B/s | 13.5 KiB | 00m00s [303/721] Installing texlive-memoir-11: 100% | 236.2 MiB/s | 483.6 KiB | 00m00s [304/721] Installing texlive-babelbib-1 100% | 256.3 MiB/s | 787.2 KiB | 00m00s [305/721] Installing texlive-euenc-11:s 100% | 41.2 MiB/s | 42.2 KiB | 00m00s [306/721] Installing texlive-euler-11:s 100% | 0.0 B/s | 21.4 KiB | 00m00s [307/721] Installing texlive-everyshi-1 100% | 155.2 MiB/s | 158.9 KiB | 00m00s [308/721] Installing texlive-fancybox-1 100% | 0.0 B/s | 41.5 KiB | 00m00s [309/721] Installing texlive-float-11:s 100% | 0.0 B/s | 16.2 KiB | 00m00s [310/721] Installing texlive-grffile-11 100% | 371.8 MiB/s | 380.7 KiB | 00m00s [311/721] Installing texlive-index-11:s 100% | 60.7 MiB/s | 62.1 KiB | 00m00s [312/721] Installing texlive-pdflscape- 100% | 336.7 MiB/s | 344.8 KiB | 00m00s [313/721] Installing texlive-ucharcat-1 100% | 0.0 B/s | 10.9 KiB | 00m00s [314/721] Installing texlive-underscore 100% | 0.0 B/s | 20.1 KiB | 00m00s [315/721] Installing texlive-bookmark-1 100% | 279.4 MiB/s | 572.2 KiB | 00m00s [316/721] Installing texlive-fancyhdr-1 100% | 31.9 MiB/s | 32.7 KiB | 00m00s [317/721] Installing texlive-firstaid-1 100% | 291.8 MiB/s | 298.8 KiB | 00m00s [318/721] Installing texlive-gettitlest 100% | 332.2 MiB/s | 340.1 KiB | 00m00s [319/721] Installing texlive-grfext-11: 100% | 321.3 MiB/s | 329.1 KiB | 00m00s [320/721] Installing texlive-kvdefineke 100% | 308.1 MiB/s | 315.5 KiB | 00m00s [321/721] Installing texlive-latexconfi 100% | 0.0 B/s | 9.8 KiB | 00m00s [322/721] Installing texlive-refcount-1 100% | 341.0 MiB/s | 349.2 KiB | 00m00s [323/721] Installing texlive-stringenc- 100% | 263.5 MiB/s | 1.1 MiB | 00m00s [324/721] Installing texlive-glyphlist- 100% | 0.0 B/s | 91.1 KiB | 00m00s [325/721] Installing texlive-lua-alt-ge 100% | 0.0 B/s | 4.3 KiB | 00m00s [326/721] Installing texlive-modes-11:s 100% | 191.4 MiB/s | 391.9 KiB | 00m00s [327/721] Installing texlive-palatino-1 100% | 93.4 MiB/s | 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texlive-mptopdf-11 100% | 75.0 MiB/s | 153.5 KiB | 00m00s [367/721] Installing texlive-pagesel-11 100% | 347.7 MiB/s | 356.1 KiB | 00m00s [368/721] Installing texlive-pslatex-11 100% | 4.8 MiB/s | 29.2 KiB | 00m00s [369/721] Installing texlive-pspicture- 100% | 14.4 MiB/s | 14.7 KiB | 00m00s [370/721] Installing texlive-bibtex-11: 100% | 256.2 MiB/s | 787.0 KiB | 00m00s [371/721] Installing texlive-colorprofi 100% | 89.2 MiB/s | 274.1 KiB | 00m00s [372/721] Installing texlive-ec-11:svn2 100% | 58.0 MiB/s | 2.7 MiB | 00m00s [373/721] Installing texlive-enctex-11: 100% | 61.0 MiB/s | 187.3 KiB | 00m00s [374/721] Installing texlive-hyphenex-1 100% | 0.0 B/s | 26.1 KiB | 00m00s [375/721] Installing texlive-knuth-loca 100% | 36.8 MiB/s | 113.1 KiB | 00m00s [376/721] Installing texlive-luahbtex-1 100% | 316.9 MiB/s | 6.3 MiB | 00m00s [377/721] Installing texlive-makeindex- 100% | 166.7 MiB/s | 511.9 KiB | 00m00s [378/721] Installing texlive-mflogo-11: 100% | 13.3 MiB/s | 13.6 KiB | 00m00s [379/721] Installing texlive-mfware-11: 100% | 70.8 MiB/s | 217.4 KiB | 00m00s [380/721] Installing texlive-tex-11:svn 100% | 190.8 MiB/s | 390.8 KiB | 00m00s [381/721] Installing texlive-texlive-en 100% | 424.1 MiB/s | 5.9 MiB | 00m00s [382/721] Installing texlive-texlive-ms 100% | 351.6 MiB/s | 1.4 MiB | 00m00s [383/721] Installing texlive-pdfcolmk-1 100% | 20.2 MiB/s | 20.7 KiB | 00m00s [384/721] Installing texlive-xcolor-11: 100% | 78.8 MiB/s | 80.7 KiB | 00m00s [385/721] Installing texlive-eso-pic-11 100% | 27.9 MiB/s | 28.6 KiB | 00m00s [386/721] Installing texlive-lm-math-11 100% | 239.9 MiB/s | 736.9 KiB | 00m00s [387/721] Installing texlive-avantgar-1 100% | 112.9 MiB/s | 1.2 MiB | 00m00s [388/721] Installing texlive-bookman-11 100% | 112.1 MiB/s | 1.2 MiB | 00m00s [389/721] Installing texlive-charter-11 100% | 101.3 MiB/s | 415.0 KiB | 00m00s [390/721] Installing texlive-courier-11 100% | 114.4 MiB/s | 937.1 KiB | 00m00s [391/721] Installing texlive-helvetic-1 100% | 121.9 MiB/s | 1.8 MiB | 00m00s [392/721] Installing texlive-symbol-11: 100% | 26.7 MiB/s | 82.0 KiB | 00m00s [393/721] Installing texlive-times-11:s 100% | 99.8 MiB/s | 1.0 MiB | 00m00s [394/721] Installing texlive-utopia-11: 100% | 134.6 MiB/s | 551.4 KiB | 00m00s [395/721] Installing texlive-luabidi-11 100% | 26.1 MiB/s | 26.8 KiB | 00m00s [396/721] Installing texlive-makecmds-1 100% | 0.0 B/s | 11.9 KiB | 00m00s [397/721] Installing texlive-dehyph-11: 100% | 235.5 MiB/s | 241.2 KiB | 00m00s [398/721] Installing texlive-parallel-1 100% | 0.0 B/s | 23.3 KiB | 00m00s [399/721] Installing texlive-pdfcol-11: 100% | 338.7 MiB/s | 346.8 KiB | 00m00s [400/721] Installing texlive-fpl-11:svn 100% | 212.0 MiB/s | 651.2 KiB | 00m00s [401/721] Installing texlive-mathpazo-1 100% | 28.5 MiB/s | 116.7 KiB | 00m00s [402/721] Installing texlive-psnfss-11: 100% | 23.3 MiB/s | 119.5 KiB | 00m00s [403/721] Installing texlive-ctablestac 100% | 20.4 MiB/s | 20.9 KiB | 00m00s [404/721] Installing texlive-luatexbase 100% | 14.7 MiB/s | 15.1 KiB | 00m00s [405/721] Installing texlive-lua-uni-al 100% | 128.2 MiB/s | 131.3 KiB | 00m00s [406/721] Installing texlive-lualibs-11 100% | 251.2 MiB/s | 771.6 KiB | 00m00s [407/721] Installing texlive-luaotfload 100% | 373.6 MiB/s | 8.2 MiB | 00m00s [408/721] Installing texlive-beton-11:s 100% | 0.0 B/s | 12.5 KiB | 00m00s [409/721] Installing texlive-finstrut-1 100% | 0.0 B/s | 26.4 KiB | 00m00s [410/721] Installing texlive-lineno-11: 100% | 233.2 MiB/s | 238.8 KiB | 00m00s [411/721] Installing texlive-alphalph-1 100% | 368.3 MiB/s | 377.1 KiB | 00m00s [412/721] Installing texlive-enumitem-1 100% | 58.7 MiB/s | 60.1 KiB | 00m00s [413/721] Installing texlive-marginnote 100% | 0.0 B/s | 23.3 KiB | 00m00s [414/721] Installing texlive-mparhack-1 100% | 0.0 B/s | 21.1 KiB | 00m00s [415/721] Installing texlive-picture-11 100% | 317.1 MiB/s | 324.8 KiB | 00m00s [416/721] Installing texlive-rsfs-11:sv 100% | 49.9 MiB/s | 102.2 KiB | 00m00s 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java-21-openjdk-devel-1:21.0.4.0.7-2.fc41.x8 >>> Stop post-install scriptlet: java-21-openjdk-devel-1:21.0.4.0.7-2.fc41.x86_6 [697/721] Installing libX11-xcb-0:1.8.1 100% | 7.7 MiB/s | 15.9 KiB | 00m00s [698/721] Installing libX11-devel-0:1.8 100% | 37.3 MiB/s | 1.1 MiB | 00m00s [699/721] Installing libXrender-devel-0 100% | 49.8 MiB/s | 51.0 KiB | 00m00s [700/721] Installing libXext-devel-0:1. 100% | 27.1 MiB/s | 110.9 KiB | 00m00s [701/721] Installing freetype-devel-0:2 100% | 261.9 MiB/s | 7.9 MiB | 00m00s [702/721] Installing fontconfig-devel-0 100% | 18.5 MiB/s | 151.9 KiB | 00m00s [703/721] Installing cairo-devel-0:1.18 100% | 254.6 MiB/s | 2.3 MiB | 00m00s [704/721] Installing harfbuzz-devel-0:9 100% | 268.8 MiB/s | 5.1 MiB | 00m00s [705/721] Installing libXft-devel-0:2.3 100% | 10.8 MiB/s | 44.3 KiB | 00m00s [706/721] Installing tk-devel-1:8.6.14- 100% | 84.2 MiB/s | 1.0 MiB | 00m00s [707/721] Installing libstdc++-devel-0: 100% | 222.2 MiB/s | 15.6 MiB | 00m00s [708/721] Installing gcc-c++-0:14.2.1-1 100% | 315.4 MiB/s | 38.2 MiB | 00m00s [709/721] Installing R-core-devel-0:4.4 100% | 130.6 MiB/s | 401.3 KiB | 00m00s [710/721] Installing R-java-devel-0:4.4 100% | 0.0 B/s | 124.0 B | 00m00s [711/721] Installing R-devel-0:4.4.1-5. 100% | 121.1 KiB/s | 124.0 B | 00m00s [712/721] Installing R-GenomicAlignment 100% | 151.9 MiB/s | 3.2 MiB | 00m00s [713/721] Installing R-Biostrings-devel 100% | 16.8 MiB/s | 17.2 KiB | 00m00s [714/721] Installing R-restfulr-0:0.0.1 100% | 77.7 MiB/s | 556.6 KiB | 00m00s [715/721] Installing R-XVector-devel-0: 100% | 0.0 B/s | 18.1 KiB | 00m00s [716/721] Installing R-IRanges-devel-0: 100% | 0.0 B/s | 11.0 KiB | 00m00s [717/721] Installing R-BiocIO-0:1.6.0-9 100% | 144.6 MiB/s | 888.4 KiB | 00m00s [718/721] Installing R-S4Vectors-devel- 100% | 32.5 MiB/s | 33.2 KiB | 00m00s [719/721] Installing annobin-plugin-gcc 100% | 43.8 MiB/s | 987.3 KiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch [720/721] Installing gcc-plugin-annobin 100% | 2.1 MiB/s | 62.7 KiB | 00m00s >>> Running trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch >>> Stop trigger-install scriptlet: redhat-rpm-config-0:294-1.fc42.noarch warning: posix.fork(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.wait(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead warning: posix.exec(): .fork(), .exec(), .wait() and .redirect2null() are deprecated, use rpm.execute() instead [721/721] Installing openssl-devel-1:3. 100% | 107.8 KiB/s | 5.2 MiB | 00m49s >>> Running post-transaction scriptlet: texlive-base-11:20230311-85.fc41.x86_64 >>> Stop post-transaction scriptlet: texlive-base-11:20230311-85.fc41.x86_64 >>> Running post-transaction scriptlet: urw-base35-bookman-fonts-0:20200910-23.f >>> Stop post-transaction scriptlet: 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Warning: skipped PGP checks for 719 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Finish: build setup for R-rtracklayer-1.62.0-3.fc42.src.rpm Start: rpmbuild R-rtracklayer-1.62.0-3.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1725408000 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.frp5RP + umask 022 + cd /builddir/build/BUILD/R-rtracklayer-1.62.0-build + test -d /builddir/build/BUILD/R-rtracklayer-1.62.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/R-rtracklayer-1.62.0-build + /usr/bin/rm -rf /builddir/build/BUILD/R-rtracklayer-1.62.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/R-rtracklayer-1.62.0-build + /usr/bin/mkdir -p /builddir/build/BUILD/R-rtracklayer-1.62.0-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.FPnTOM + umask 022 + cd /builddir/build/BUILD/R-rtracklayer-1.62.0-build + cd /builddir/build/BUILD/R-rtracklayer-1.62.0-build + rm -rf rtracklayer + /usr/bin/mkdir -p rtracklayer + cd rtracklayer + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/rtracklayer_1.62.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + sed -i -e 's|zlibbioc,||' rtracklayer/DESCRIPTION + sed -i -e 's|import(zlibbioc)||' rtracklayer/NAMESPACE + pushd rtracklayer ~/build/BUILD/R-rtracklayer-1.62.0-build/rtracklayer/rtracklayer ~/build/BUILD/R-rtracklayer-1.62.0-build/rtracklayer Patch #0 (0001-fix-format-security.patch): + echo 'Patch #0 (0001-fix-format-security.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0 patching file src/handlers.c + popd ~/build/BUILD/R-rtracklayer-1.62.0-build/rtracklayer + cp /builddir/build/SOURCES/rtracklayer_jimkent_license.txt . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.IWCPSq + umask 022 + cd /builddir/build/BUILD/R-rtracklayer-1.62.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd rtracklayer + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.5wkqQf + umask 022 + cd /builddir/build/BUILD/R-rtracklayer-1.62.0-build + '[' /builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT ++ dirname /builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/R-rtracklayer-1.62.0-build + mkdir /builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd rtracklayer + mkdir -p /builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT/usr/lib64/R/library + /usr/bin/R CMD INSTALL rtracklayer -l /builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT/usr/lib64/R/library * installing *source* package ‘rtracklayer’ ... ** using staged installation checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for OPENSSL... yes configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc (GCC) 14.2.1 20240801 (Red Hat 14.2.1-1)’ gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c IRanges_stubs.c -o IRanges_stubs.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c XVector_stubs.c -o XVector_stubs.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c R_init_rtracklayer.c -o R_init_rtracklayer.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c readGFF.c -o readGFF.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bbiHelper.c -o bbiHelper.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bigWig.c -o bigWig.o bigWig.c: In function ‘BWGFile_query’: bigWig.c:268:11: warning: ‘ans_nhits’ may be used uninitialized [-Wmaybe-uninitialized] 268 | INTEGER(ans_nhits)[i] = nqhits; | ^~~~~~~~~~~~~~~~~~ bigWig.c:231:58: note: ‘ans_nhits’ was declared here 231 | SEXP ans, ans_start, ans_width, ans_score, ans_ranges, ans_nhits; | ^~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bigBedHelper.c -o bigBedHelper.o In file included from /usr/include/string.h:548, from ucsc/common.h:33, from bigBedHelper.h:5, from bigBedHelper.c:1: In function ‘strncpy’, inlined from ‘bbNamedFileChunkKey’ at bigBedHelper.c:148:3: /usr/include/bits/string_fortified.h:100:10: warning: ‘strncpy’ destination unchanged after copying no bytes [-Wstringop-truncation] 100 | return __builtin___strncpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 | __glibc_objsize (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c bigBed.c -o bigBed.o bigBed.c: In function ‘BBDFile_write’: bigBed.c:338:10: warning: variable ‘extraIndexListEndOffset’ set but not used [-Wunused-but-set-variable] 338 | bits64 extraIndexListEndOffset = 0; | ^~~~~~~~~~~~~~~~~~~~~~~ bigBed.c: In function ‘BBDFile_query’: bigBed.c:195:7: warning: ‘name’ may be used uninitialized [-Wmaybe-uninitialized] 195 | SET_STRING_ELT(name, i, mkChar(bed->name)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bigBed.c:74:54: note: ‘name’ was declared here 74 | SEXP ans, n_qhits, ranges, chromStart, chromWidth, name, score, | ^~~~ bigBed.c:198:7: warning: ‘score’ may be used uninitialized [-Wmaybe-uninitialized] 198 | INTEGER(score)[i] = bed->score; | ^~~~~~~~~~~~~~ bigBed.c:74:60: note: ‘score’ was declared here 74 | SEXP ans, n_qhits, ranges, chromStart, chromWidth, name, score, | ^~~~~ bigBed.c:205:7: warning: ‘thickStart’ may be used uninitialized [-Wmaybe-uninitialized] 205 | INTEGER(thickStart)[i] = bed->thickStart; | ^~~~~~~~~~~~~~~~~~~ bigBed.c:75:26: note: ‘thickStart’ was declared here 75 | strand = R_NilValue, thickStart, thickWidth, itemRgb, blocks, | ^~~~~~~~~~ bigBed.c:204:7: warning: ‘thickWidth’ may be used uninitialized [-Wmaybe-uninitialized] 204 | INTEGER(thickWidth)[i] = bed->thickEnd - bed->thickStart + 1; | ^~~~~~~~~~~~~~~~~~~ bigBed.c:75:38: note: ‘thickWidth’ was declared here 75 | strand = R_NilValue, thickStart, thickWidth, itemRgb, blocks, | ^~~~~~~~~~ bigBed.c:209:7: warning: ‘itemRgb’ may be used uninitialized [-Wmaybe-uninitialized] 209 | SET_STRING_ELT(itemRgb, i, mkChar(rgbBuf)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bigBed.c:75:50: note: ‘itemRgb’ was declared here 75 | strand = R_NilValue, thickStart, thickWidth, itemRgb, blocks, | ^~~~~~~ bigBed.c:218:7: warning: ‘blocks’ may be used uninitialized [-Wmaybe-uninitialized] 218 | SET_VECTOR_ELT(blocks, i, new_IRanges("IRanges", bstart, bwidth, R_NilValue)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bigBed.c:75:59: note: ‘blocks’ was declared here 75 | strand = R_NilValue, thickStart, thickWidth, itemRgb, blocks, | ^~~~~~ bigBed.c:236:13: warning: ‘lengthIndex’ may be used uninitialized [-Wmaybe-uninitialized] 236 | INTEGER(lengthIndex)[efIndex] = index + 1; | ^~~~~~~~~~~~~~~~~~~~ bigBed.c:76:31: note: ‘lengthIndex’ was declared here 76 | extraFields = R_NilValue, lengthIndex; | ^~~~~~~~~~~ bigBed.c:226:22: warning: ‘typeId’ may be used uninitialized [-Wmaybe-uninitialized] 226 | switch(typeId[efIndex]) { | ^ bigBed.c:141:13: note: ‘typeId’ was declared here 141 | SEXPTYPE *typeId; | ^~~~~~ gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c chain_io.c -o chain_io.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c twoBit.c -o twoBit.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c handlers.c -o handlers.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c utils.c -o utils.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/memgfx.c -o ucsc/memgfx.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/aliType.c -o ucsc/aliType.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/binRange.c -o ucsc/binRange.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/htmlColor.c -o ucsc/htmlColor.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/sqlList.c -o ucsc/sqlList.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/tokenizer.c -o ucsc/tokenizer.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/asParse.c -o ucsc/asParse.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/basicBed.c -o ucsc/basicBed.o ucsc/basicBed.c: In function ‘bedParseRgb’: ucsc/basicBed.c:997:1: warning: ‘strncpy’ specified bound 64 equals destination size [-Wstringop-truncation] 997 | strncpy(dupe, itemRgb, sizeof(dupe)); | ^ gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/bigBed.c -o ucsc/bigBed.o ucsc/bigBed.c: In function ‘extractField’: ucsc/bigBed.c:314:52: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 314 | warn("Not enough fields in extractField of %s", line); | ^~ gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/bPlusTree.c -o ucsc/bPlusTree.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/bbiRead.c -o ucsc/bbiRead.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/bbiWrite.c -o ucsc/bbiWrite.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/bwgCreate.c -o ucsc/bwgCreate.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/bwgQuery.c -o ucsc/bwgQuery.o ucsc/bwgQuery.c: In function ‘bigWigIntervalQuery’: ucsc/bwgQuery.c:187:25: warning: variable ‘blockEnd’ set but not used [-Wunused-but-set-variable] 187 | char *blockPt, *blockEnd; | ^~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/cirTree.c -o ucsc/cirTree.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/common.c -o ucsc/common.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/dnaseq.c -o ucsc/dnaseq.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/dnautil.c -o ucsc/dnautil.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/errAbort.c -o ucsc/errAbort.o ucsc/errAbort.c: In function ‘getThreadVars’: ucsc/errAbort.c:331:5: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 331 | write(STDERR_FILENO, errMsg, strlen(errMsg)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/hash.c -o ucsc/hash.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/linefile.c -o ucsc/linefile.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/localmem.c -o ucsc/localmem.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/sqlNum.c -o ucsc/sqlNum.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/zlibFace.c -o ucsc/zlibFace.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/dystring.c -o ucsc/dystring.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/hmmstats.c -o ucsc/hmmstats.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/obscure.c -o ucsc/obscure.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/pipeline.c -o ucsc/pipeline.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/rangeTree.c -o ucsc/rangeTree.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/rbTree.c -o ucsc/rbTree.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/memalloc.c -o ucsc/memalloc.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/dlist.c -o ucsc/dlist.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/hex.c -o ucsc/hex.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/filePath.c -o ucsc/filePath.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/htmlPage.c -o ucsc/htmlPage.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/udc.c -o ucsc/udc.o In file included from ucsc/udc.c:41: ucsc/net.h:178:1: warning: "/*" within comment [-Wcomment] 178 | /* Use byteRange as a work-around alternate method to get file size (content-length). ucsc/udc.c: In function ‘djb2_hash’: ucsc/udc.c:1088:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 1088 | while (c = *str++) | ^ gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/net.c -o ucsc/net.o In file included from ucsc/net.c:19: ucsc/net.h:178:1: warning: "/*" within comment [-Wcomment] 178 | /* Use byteRange as a work-around alternate method to get file size (content-length). ucsc/net.c: In function ‘netConnectWithTimeout’: ucsc/net.c:148:38: warning: passing argument 3 to ‘restrict’-qualified parameter aliases with argument 4 [-Wrestrict] 148 | res = select(sd+1, NULL, &mySet, &mySet, &tempTime); | ^~~~~~ ~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/bits.c -o ucsc/bits.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/twoBit.c -o ucsc/twoBit.o In file included from ucsc/twoBit.c:15: ucsc/net.h:178:1: warning: "/*" within comment [-Wcomment] 178 | /* Use byteRange as a work-around alternate method to get file size (content-length). gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/_cheapcgi.c -o ucsc/_cheapcgi.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/internet.c -o ucsc/internet.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/https.c -o ucsc/https.o In file included from ucsc/https.c:17: ucsc/net.h:178:1: warning: "/*" within comment [-Wcomment] 178 | /* Use byteRange as a work-around alternate method to get file size (content-length). ucsc/https.c: In function ‘openSslInit’: ucsc/https.c:76:5: warning: ‘ERR_load_SSL_strings’ is deprecated: Since OpenSSL 3.0 [-Wdeprecated-declarations] 76 | ERR_load_SSL_strings(); | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/openssl/sslerr.h:17, from /usr/include/openssl/ssl.h:44, from ucsc/https.c:8: /usr/include/openssl/sslerr_legacy.h:29:27: note: declared here 29 | OSSL_DEPRECATEDIN_3_0 int ERR_load_SSL_strings(void); | ^~~~~~~~~~~~~~~~~~~~ ucsc/https.c: At top level: ucsc/https.c:27:13: warning: ‘openssl_locking_callback’ defined but not used [-Wunused-function] 27 | static void openssl_locking_callback(int mode, int n, const char * file, int line) | ^~~~~~~~~~~~~~~~~~~~~~~~ ucsc/https.c:22:22: warning: ‘openssl_id_callback’ defined but not used [-Wunused-function] 22 | static unsigned long openssl_id_callback(void) | ^~~~~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/base64.c -o ucsc/base64.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/verbose.c -o ucsc/verbose.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/os.c -o ucsc/os.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/wildcmp.c -o ucsc/wildcmp.o gcc -I"/usr/include/R" -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I'/usr/lib64/R/library/S4Vectors/include' -I'/usr/lib64/R/library/IRanges/include' -I'/usr/lib64/R/library/XVector/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c ucsc/_portimpl.c -o ucsc/_portimpl.o gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o rtracklayer.so S4Vectors_stubs.o IRanges_stubs.o XVector_stubs.o R_init_rtracklayer.o readGFF.o bbiHelper.o bigWig.o bigBedHelper.o bigBed.o chain_io.o twoBit.o handlers.o utils.o ucsc/memgfx.o ucsc/aliType.o ucsc/binRange.o ucsc/htmlColor.o ucsc/sqlList.o ucsc/tokenizer.o ucsc/asParse.o ucsc/basicBed.o ucsc/bigBed.o ucsc/bPlusTree.o ucsc/bbiRead.o ucsc/bbiWrite.o ucsc/bwgCreate.o ucsc/bwgQuery.o ucsc/cirTree.o ucsc/common.o ucsc/dnaseq.o ucsc/dnautil.o ucsc/errAbort.o ucsc/hash.o ucsc/linefile.o ucsc/localmem.o ucsc/sqlNum.o ucsc/zlibFace.o ucsc/dystring.o ucsc/hmmstats.o ucsc/obscure.o ucsc/pipeline.o ucsc/rangeTree.o ucsc/rbTree.o ucsc/memalloc.o ucsc/dlist.o ucsc/hex.o ucsc/filePath.o ucsc/htmlPage.o ucsc/udc.o ucsc/net.o ucsc/bits.o ucsc/twoBit.o ucsc/_cheapcgi.o ucsc/internet.o ucsc/https.o ucsc/base64.o ucsc/verbose.o ucsc/os.o ucsc/wildcmp.o ucsc/_portimpl.o -lz -pthread -lssl -lcrypto -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT/usr/lib64/R/library/00LOCK-rtracklayer/00new/rtracklayer/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘offset’ from package ‘stats’ in package ‘rtracklayer’ ** help *** installing help indices converting help for package ‘rtracklayer’ finding HTML links ... done BEDFile-class html BamFile-methods html Bed15TrackLine-class html BigBedFile html finding level-2 HTML links ... done BigBedSelection html BigWigFile html BigWigSelection-class html BrowserViewList-class html Chain-class html FastaFile-class html GFFFile-class html GRangesForUCSCGenome html GenomicData html GenomicSelection html IntegerRangesList-methods html Quickload-class html QuickloadGenome-class html TabixFile-methods html TrackDb-class html TrackHub-class html TrackHubGenome-class html TwoBitFile-class html UCSCData-class html UCSCFile-class html UCSCSchema-class html UCSCTableQuery-class html WIGFile-class html activeView-methods html asBED html asGFF html basicTrackLine-class html blocks-methods html browseGenome html browserSession-class html browserSession-methods html browserView-class html browserView-methods html browserViews-methods html cpneTrack html genomeBrowsers html laySequence-methods html layTrack-methods html liftOver html readGFF html targets html tracks-methods html ucscGenomes html ucscSession-class html ucscTrackLine-class html ucscTrackModes-class html ucscTrackModes-methods html ucscView-class html wigToBigWig html wigTrackLine-class html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rtracklayer) + test -d rtracklayer/src + cd rtracklayer/src + rm -f IRanges_stubs.o R_init_rtracklayer.o S4Vectors_stubs.o XVector_stubs.o bbiHelper.o bigBed.o bigBedHelper.o bigWig.o chain_io.o handlers.o readGFF.o twoBit.o utils.o rtracklayer.so + rm -rf /builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT/usr/lib64/R/library/R.css + rm -rf /builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT/usr/lib64/R/library/rtracklayer/tests/quickload/T_species_Oct_2011/bedGraphData.bw + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.62.0-3.fc42 --unique-debug-suffix -1.62.0-3.fc42.x86_64 --unique-debug-src-base R-rtracklayer-1.62.0-3.fc42.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/R-rtracklayer-1.62.0-build/rtracklayer find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-rtracklayer-1.62.0-3.fc42.x86_64 2226 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT Scanned 37 directories and 727 files, processed 537 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/R-rtracklayer-1.62.0-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.23Ji4F + umask 022 + cd /builddir/build/BUILD/R-rtracklayer-1.62.0-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd rtracklayer + RPM_EC=0 ++ jobs -p Processing files: R-rtracklayer-1.62.0-3.fc42.x86_64 + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.2de60d + umask 022 + cd /builddir/build/BUILD/R-rtracklayer-1.62.0-build + cd rtracklayer + LICENSEDIR=/builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT/usr/share/licenses/R-rtracklayer + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT/usr/share/licenses/R-rtracklayer + cp -pr /builddir/build/BUILD/R-rtracklayer-1.62.0-build/rtracklayer/rtracklayer_jimkent_license.txt /builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT/usr/share/licenses/R-rtracklayer + RPM_EC=0 ++ jobs -p + exit 0 Provides: R(rtracklayer) = 1.62.0 R-rtracklayer = 1.62.0-3.fc42 R-rtracklayer(x86-64) = 1.62.0-3.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: R(ABI) = 4.4 R(BiocGenerics) >= 0.35.3 R(BiocIO) R(Biostrings) >= 2.47.6 R(GenomeInfoDb) >= 1.15.2 R(GenomicAlignments) >= 1.15.6 R(GenomicRanges) >= 1.37.2 R(IRanges) >= 2.13.13 R(RCurl) >= 1.4.2 R(Rsamtools) >= 1.31.2 R(S4Vectors) >= 0.23.18 R(XML) >= 1.98.0 R(XVector) >= 0.19.7 R(methods) R(restfulr) >= 0.0.13 R(tools) R-core >= 3.5.0 libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.28)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libcrypto.so.3()(64bit) libcrypto.so.3(OPENSSL_3.0.0)(64bit) libssl.so.3()(64bit) libssl.so.3(OPENSSL_3.0.0)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Suggests: R(BSgenome) >= 1.33.4 R(RUnit) Processing files: R-rtracklayer-debugsource-1.62.0-3.fc42.x86_64 Provides: R-rtracklayer-debugsource = 1.62.0-3.fc42 R-rtracklayer-debugsource(x86-64) = 1.62.0-3.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-rtracklayer-debuginfo-1.62.0-3.fc42.x86_64 Provides: R-rtracklayer-debuginfo = 1.62.0-3.fc42 R-rtracklayer-debuginfo(x86-64) = 1.62.0-3.fc42 debuginfo(build-id) = 6aeffb0d0788ecad7b061b5f800645363bfe0d2b Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-rtracklayer-debugsource(x86-64) = 1.62.0-3.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/R-rtracklayer-1.62.0-build/BUILDROOT Wrote: /builddir/build/RPMS/R-rtracklayer-debuginfo-1.62.0-3.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/R-rtracklayer-debugsource-1.62.0-3.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/R-rtracklayer-1.62.0-3.fc42.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.CxX5aJ + umask 022 + cd /builddir/build/BUILD/R-rtracklayer-1.62.0-build + test -d /builddir/build/BUILD/R-rtracklayer-1.62.0-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/R-rtracklayer-1.62.0-build + rm -rf /builddir/build/BUILD/R-rtracklayer-1.62.0-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild R-rtracklayer-1.62.0-3.fc42.src.rpm Finish: build phase for R-rtracklayer-1.62.0-3.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-x86_64-1725501753.224600/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/R-rtracklayer-1.62.0-3.fc42.src.rpm) Config(child) 2 minutes 9 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-rtracklayer-debugsource", "epoch": null, "version": "1.62.0", "release": "3.fc42", "arch": "x86_64" }, { "name": "R-rtracklayer", "epoch": null, "version": "1.62.0", "release": "3.fc42", "arch": "src" }, { "name": "R-rtracklayer", "epoch": null, "version": "1.62.0", "release": "3.fc42", "arch": "x86_64" }, { "name": "R-rtracklayer-debuginfo", "epoch": null, "version": "1.62.0", "release": "3.fc42", "arch": "x86_64" } ] } RPMResults finished