Warning: Permanently added '34.229.227.31' (ED25519) to the list of known hosts. Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-q8zv6a7g/libsonata/libsonata.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-q8zv6a7g/libsonata --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1738675768.824783 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.0 starting (python version = 3.13.0, NVR = mock-6.0-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-q8zv6a7g/libsonata/libsonata.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-q8zv6a7g/libsonata --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1738675768.824783 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-q8zv6a7g/libsonata/libsonata.spec) Config(fedora-41-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.0 INFO: Mock Version: 6.0 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1738675768.824783/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:41 INFO: Pulling image: registry.fedoraproject.org/fedora:41 INFO: Tagging container image as mock-bootstrap-208609ad-6c73-48ba-9dfc-bdb263219246 INFO: Checking that a432b057a522737c229d2aac9b029f55bf2a44eb3f423e4e4ece2acb8a304652 image matches host's architecture INFO: Copy content of container a432b057a522737c229d2aac9b029f55bf2a44eb3f423e4e4ece2acb8a304652 to /var/lib/mock/fedora-41-x86_64-bootstrap-1738675768.824783/root INFO: mounting a432b057a522737c229d2aac9b029f55bf2a44eb3f423e4e4ece2acb8a304652 with podman image mount INFO: image a432b057a522737c229d2aac9b029f55bf2a44eb3f423e4e4ece2acb8a304652 as /var/lib/containers/storage/overlay/c9636add90844f42998958a532f08e880f2904e56e7e03e6d453e29ae1b586c4/merged INFO: umounting image a432b057a522737c229d2aac9b029f55bf2a44eb3f423e4e4ece2acb8a304652 (/var/lib/containers/storage/overlay/c9636add90844f42998958a532f08e880f2904e56e7e03e6d453e29ae1b586c4/merged) with podman image umount INFO: Removing image mock-bootstrap-208609ad-6c73-48ba-9dfc-bdb263219246 INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1738675768.824783/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc41.x86_64 rpm-sequoia-1.7.0-3.fc41.x86_64 dnf5-5.2.8.1-3.fc41.x86_64 dnf5-plugins-5.2.8.1-3.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: updates 100% | 37.7 KiB/s | 10.8 KiB | 00m00s fedora 100% | 308.0 KiB/s | 32.6 KiB | 00m00s Copr repository 100% | 76.9 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 201.5 KiB/s | 3.8 KiB | 00m00s Repositories loaded. 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 500.0 B qt6-srpm-macros noarch 6.8.2-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0 B readline x86_64 8.2-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 485.0 KiB rpm x86_64 4.20.0-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB rpm-build-libs x86_64 4.20.0-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 202.6 KiB rpm-libs x86_64 4.20.0-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 721.8 KiB rpm-sequoia x86_64 1.7.0-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.4 MiB rust-srpm-macros noarch 26.3-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 KiB setup noarch 2.15.0-10.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.7 KiB sqlite-libs x86_64 3.47.2-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB systemd x86_64 257.2-17.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 17.4 MiB systemd-libs x86_64 257.2-17.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 MiB systemd-pam x86_64 257.2-17.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 MiB systemd-rpm-macros noarch 257.2-17.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 10.7 KiB tree-sitter-srpm-macros noarch 0.1.0-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.5 KiB util-linux-core x86_64 2.40.4-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB xxhash-libs x86_64 0.8.3-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 90.2 KiB xz-libs x86_64 1:5.6.3-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 218.3 KiB zig-srpm-macros noarch 1-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip x86_64 3.0-43.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 698.5 KiB zlib-ng-compat x86_64 2.2.3-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 137.6 KiB zstd x86_64 1.5.6-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 164 packages Total size of inbound packages is 59 MiB. Need to download 0 B. After this operation, 199 MiB extra will be used (install 199 MiB, remove 0 B). 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Installing ncurses-base-0:6.5 100% | 86.0 MiB/s | 352.2 KiB | 00m00s [ 30/166] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 31/166] Installing ncurses-libs-0:6.5 100% | 232.6 MiB/s | 952.8 KiB | 00m00s [ 32/166] Installing glibc-0:2.40.9000- 100% | 221.8 MiB/s | 6.7 MiB | 00m00s [ 33/166] Installing bash-0:5.2.37-1.fc 100% | 302.6 MiB/s | 8.2 MiB | 00m00s [ 34/166] Installing glibc-common-0:2.4 100% | 72.9 MiB/s | 1.0 MiB | 00m00s [ 35/166] Installing glibc-gconv-extra- 100% | 281.2 MiB/s | 7.3 MiB | 00m00s [ 36/166] Installing zlib-ng-compat-0:2 100% | 0.0 B/s | 138.4 KiB | 00m00s [ 37/166] Installing xz-libs-1:5.6.3-3. 100% | 214.3 MiB/s | 219.4 KiB | 00m00s [ 38/166] Installing bzip2-libs-0:1.0.8 100% | 0.0 B/s | 85.7 KiB | 00m00s [ 39/166] Installing libuuid-0:2.40.4-2 100% | 0.0 B/s | 38.4 KiB | 00m00s [ 40/166] Installing libblkid-0:2.40.4- 100% | 257.2 MiB/s | 263.4 KiB | 00m00s [ 41/166] Installing libxcrypt-0:4.4.38 100% | 264.3 MiB/s | 270.7 KiB | 00m00s [ 42/166] Installing readline-0:8.2-12. 100% | 237.9 MiB/s | 487.1 KiB | 00m00s [ 43/166] Installing popt-0:1.19-8.fc42 100% | 68.1 MiB/s | 139.4 KiB | 00m00s [ 44/166] Installing libzstd-0:1.5.6-3. 100% | 389.2 MiB/s | 797.0 KiB | 00m00s [ 45/166] Installing elfutils-libelf-0: 100% | 390.1 MiB/s | 1.2 MiB | 00m00s [ 46/166] Installing libstdc++-0:15.0.1 100% | 470.0 MiB/s | 2.8 MiB | 00m00s [ 47/166] Installing gmp-1:6.3.0-2.fc41 100% | 397.3 MiB/s | 813.7 KiB | 00m00s [ 48/166] Installing libeconf-0:0.7.5-2 100% | 0.0 B/s | 70.1 KiB | 00m00s [ 49/166] Installing libcap-ng-0:0.8.5- 100% | 0.0 B/s | 74.8 KiB | 00m00s [ 50/166] Installing audit-libs-0:4.0.3 100% | 345.1 MiB/s | 353.4 KiB | 00m00s [ 51/166] Installing pam-libs-0:1.7.0-4 100% | 126.1 MiB/s | 129.1 KiB | 00m00s [ 52/166] Installing libcap-0:2.73-2.fc 100% | 18.8 MiB/s | 212.1 KiB | 00m00s [ 53/166] Installing systemd-libs-0:257 100% | 373.9 MiB/s | 2.2 MiB | 00m00s [ 54/166] Installing libattr-0:2.5.2-5. 100% | 0.0 B/s | 28.1 KiB | 00m00s [ 55/166] Installing libacl-0:2.3.2-3.f 100% | 0.0 B/s | 39.2 KiB | 00m00s [ 56/166] Installing gdbm-libs-1:1.23-9 100% | 128.5 MiB/s | 131.6 KiB | 00m00s [ 57/166] Installing mpfr-0:4.2.1-6.fc4 100% | 407.0 MiB/s | 833.6 KiB | 00m00s [ 58/166] Installing gawk-0:5.3.1-1.fc4 100% | 113.0 MiB/s | 1.7 MiB | 00m00s [ 59/166] Installing dwz-0:0.15-9.fc42. 100% | 28.6 MiB/s | 292.4 KiB | 00m00s [ 60/166] Installing libfdisk-0:2.40.4- 100% | 364.7 MiB/s | 373.5 KiB | 00m00s [ 61/166] Installing unzip-0:6.0-66.fc4 100% | 35.0 MiB/s | 393.8 KiB | 00m00s [ 62/166] Installing file-libs-0:5.46-1 100% | 790.5 MiB/s | 11.9 MiB | 00m00s [ 63/166] Installing file-0:5.46-1.fc42 100% | 5.8 MiB/s | 101.7 KiB | 00m00s [ 64/166] Installing crypto-policies-0: 100% | 40.0 MiB/s | 163.7 KiB | 00m00s [ 65/166] Installing libsmartcols-0:2.4 100% | 177.2 MiB/s | 181.4 KiB | 00m00s [ 66/166] Installing libsepol-0:3.8-1.f 100% | 403.8 MiB/s | 827.0 KiB | 00m00s [ 67/166] Installing lua-libs-0:5.4.7-2 100% | 275.5 MiB/s | 282.1 KiB | 00m00s [ 68/166] Installing alternatives-0:1.3 100% | 6.0 MiB/s | 67.7 KiB | 00m00s [ 69/166] Installing libcom_err-0:1.47. 100% | 0.0 B/s | 68.2 KiB | 00m00s [ 70/166] Installing pcre2-0:10.44-1.fc 100% | 317.7 MiB/s | 650.7 KiB | 00m00s [ 71/166] Installing libselinux-0:3.8-1 100% | 189.8 MiB/s | 194.3 KiB | 00m00s [ 72/166] Installing grep-0:3.11-10.fc4 100% | 77.2 MiB/s | 1.0 MiB | 00m00s [ 73/166] Installing sed-0:4.9-4.fc42.x 100% | 65.0 MiB/s | 865.5 KiB | 00m00s [ 74/166] Installing findutils-1:4.10.0 100% | 124.9 MiB/s | 1.9 MiB | 00m00s [ 75/166] Installing libmount-0:2.40.4- 100% | 348.9 MiB/s | 357.2 KiB | 00m00s [ 76/166] Installing util-linux-core-0: 100% | 95.1 MiB/s | 1.4 MiB | 00m00s [ 77/166] Installing xz-1:5.6.3-3.fc42. 100% | 87.8 MiB/s | 1.2 MiB | 00m00s [ 78/166] Installing lz4-libs-0:1.10.0- 100% | 154.7 MiB/s | 158.5 KiB | 00m00s [ 79/166] Installing libffi-0:3.4.6-5.f 100% | 0.0 B/s | 83.7 KiB | 00m00s [ 80/166] Installing libtasn1-0:4.19.0- 100% | 173.2 MiB/s | 177.4 KiB | 00m00s [ 81/166] Installing p11-kit-0:0.25.5-5 100% | 128.5 MiB/s | 2.2 MiB | 00m00s [ 82/166] Installing libunistring-0:1.1 100% | 431.7 MiB/s | 1.7 MiB | 00m00s [ 83/166] Installing libidn2-0:2.3.7-3. 100% | 163.6 MiB/s | 335.0 KiB | 00m00s [ 84/166] Installing libpsl-0:0.21.5-5. 100% | 0.0 B/s | 77.5 KiB | 00m00s [ 85/166] Installing p11-kit-trust-0:0. 100% | 21.6 MiB/s | 397.2 KiB | 00m00s [ 86/166] Installing zstd-0:1.5.6-3.fc4 100% | 121.1 MiB/s | 1.7 MiB | 00m00s [ 87/166] Installing tar-2:1.35-5.fc42. 100% | 174.2 MiB/s | 3.0 MiB | 00m00s [ 88/166] Installing libsemanage-0:3.8- 100% | 151.5 MiB/s | 310.2 KiB | 00m00s [ 89/166] Installing shadow-utils-2:4.1 100% | 160.7 MiB/s | 4.0 MiB | 00m00s [ 90/166] Installing zip-0:3.0-43.fc42. 100% | 57.2 MiB/s | 702.4 KiB | 00m00s [ 91/166] Installing gdbm-1:1.23-9.fc42 100% | 41.3 MiB/s | 465.2 KiB | 00m00s [ 92/166] Installing cyrus-sasl-lib-0:2 100% | 153.6 MiB/s | 2.3 MiB | 00m00s [ 93/166] Installing bzip2-0:1.0.8-20.f 100% | 9.2 MiB/s | 103.8 KiB | 00m00s [ 94/166] Installing libxml2-0:2.12.9-2 100% | 122.0 MiB/s | 1.7 MiB | 00m00s [ 95/166] Installing sqlite-libs-0:3.47 100% | 376.1 MiB/s | 1.5 MiB | 00m00s [ 96/166] Installing add-determinism-0: 100% | 163.8 MiB/s | 2.5 MiB | 00m00s [ 97/166] Installing build-reproducibil 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 98/166] Installing filesystem-srpm-ma 100% | 0.0 B/s | 38.9 KiB | 00m00s [ 99/166] Installing ed-0:1.21-2.fc42.x 100% | 14.5 MiB/s | 148.8 KiB | 00m00s [100/166] Installing patch-0:2.7.6-26.f 100% | 25.4 MiB/s | 260.2 KiB | 00m00s [101/166] Installing elfutils-default-y 100% | 340.5 KiB/s | 2.0 KiB | 00m00s [102/166] Installing elfutils-libs-0:0. 100% | 330.4 MiB/s | 676.7 KiB | 00m00s [103/166] Installing dbus-common-1:1.16 100% | 2.6 MiB/s | 13.6 KiB | 00m00s [104/166] Installing cpio-0:2.15-2.fc41 100% | 78.6 MiB/s | 1.1 MiB | 00m00s [105/166] Installing diffutils-0:3.10-9 100% | 106.0 MiB/s | 1.6 MiB | 00m00s [106/166] Installing libgomp-0:15.0.1-0 100% | 524.4 MiB/s | 537.0 KiB | 00m00s [107/166] Installing jansson-0:2.14-2.f 100% | 92.2 MiB/s | 94.4 KiB | 00m00s [108/166] Installing libpkgconf-0:2.3.0 100% | 0.0 B/s | 79.2 KiB | 00m00s [109/166] Installing pkgconf-0:2.3.0-2. 100% | 8.9 MiB/s | 91.0 KiB | 00m00s [110/166] Installing pkgconf-pkg-config 100% | 177.3 KiB/s | 1.8 KiB | 00m00s [111/166] Installing keyutils-libs-0:1. 100% | 0.0 B/s | 59.7 KiB | 00m00s [112/166] Installing libverto-0:0.3.2-1 100% | 0.0 B/s | 27.2 KiB | 00m00s [113/166] Installing json-c-0:0.18-2.fc 100% | 0.0 B/s | 88.0 KiB | 00m00s [114/166] Installing libseccomp-0:2.5.5 100% | 171.1 MiB/s | 175.2 KiB | 00m00s [115/166] Installing expat-0:2.6.4-2.fc 100% | 12.5 MiB/s | 294.9 KiB | 00m00s [116/166] Installing dbus-broker-0:36-5 100% | 21.6 MiB/s | 397.6 KiB | 00m00s [117/166] Installing dbus-1:1.16.0-3.fc 100% | 0.0 B/s | 124.0 B | 00m00s [118/166] Installing libnghttp2-0:1.64. 100% | 167.5 MiB/s | 171.5 KiB | 00m00s [119/166] Installing xxhash-libs-0:0.8. 100% | 0.0 B/s | 91.6 KiB | 00m00s [120/166] Installing libbrotli-0:1.1.0- 100% | 411.9 MiB/s | 843.6 KiB | 00m00s [121/166] Installing libtool-ltdl-0:2.5 100% | 69.6 MiB/s | 71.2 KiB | 00m00s [122/166] Installing coreutils-common-0 100% | 429.0 MiB/s | 11.2 MiB | 00m00s [123/166] Installing openssl-libs-1:3.2 100% | 460.9 MiB/s | 7.8 MiB | 00m00s [124/166] Installing coreutils-0:9.6-1. 100% | 179.0 MiB/s | 5.5 MiB | 00m00s [125/166] Installing ca-certificates-0: 100% | 2.2 MiB/s | 2.4 MiB | 00m01s [126/166] Installing krb5-libs-0:1.21.3 100% | 328.5 MiB/s | 2.3 MiB | 00m00s [127/166] Installing libarchive-0:3.7.7 100% | 306.2 MiB/s | 940.6 KiB | 00m00s [128/166] Installing libtirpc-0:1.3.6-1 100% | 196.0 MiB/s | 200.7 KiB | 00m00s [129/166] Installing gzip-0:1.13-3.fc42 100% | 32.4 MiB/s | 398.4 KiB | 00m00s [130/166] Installing authselect-libs-0: 100% | 203.9 MiB/s | 835.0 KiB | 00m00s [131/166] Installing cracklib-0:2.9.11- 100% | 19.1 MiB/s | 253.7 KiB | 00m00s [132/166] Installing libpwquality-0:1.4 100% | 31.7 MiB/s | 421.6 KiB | 00m00s [133/166] Installing libnsl2-0:2.0.1-3. 100% | 57.6 MiB/s | 59.0 KiB | 00m00s [134/166] Installing pam-0:1.7.0-4.fc42 100% | 84.7 MiB/s | 1.7 MiB | 00m00s [135/166] Installing util-linux-0:2.40. 100% | 115.4 MiB/s | 3.5 MiB | 00m00s [136/166] Installing systemd-pam-0:257. 100% | 222.5 MiB/s | 1.1 MiB | 00m00s [137/166] Installing systemd-0:257.2-17 100% | 129.9 MiB/s | 17.5 MiB | 00m00s >>> Running post-install scriptlet: systemd-0:257.2-17.fc42.x86_64 >>> Finished post-install scriptlet: systemd-0:257.2-17.fc42.x86_64 >>> Scriptlet output: >>> Creating group 'systemd-journal' with GID 190. >>> Creating group 'systemd-oom' with GID 999. >>> Creating user 'systemd-oom' (systemd Userspace OOM Killer) with UID 999 and >>> [138/166] Installing libssh-0:0.11.1-4. 100% | 277.1 MiB/s | 567.5 KiB | 00m00s [139/166] Installing rpm-sequoia-0:1.7. 100% | 402.4 MiB/s | 2.4 MiB | 00m00s [140/166] Installing rpm-libs-0:4.20.0- 100% | 353.2 MiB/s | 723.3 KiB | 00m00s [141/166] Installing rpm-build-libs-0:4 100% | 198.7 MiB/s | 203.4 KiB | 00m00s [142/166] Installing libevent-0:2.1.12- 100% | 295.2 MiB/s | 906.9 KiB | 00m00s [143/166] Installing openldap-0:2.6.9-3 100% | 321.7 MiB/s | 658.9 KiB | 00m00s [144/166] Installing libcurl-0:8.11.1-4 100% | 411.7 MiB/s | 843.2 KiB | 00m00s [145/166] Installing elfutils-debuginfo 100% | 7.7 MiB/s | 86.2 KiB | 00m00s [146/166] Installing elfutils-0:0.192-8 100% | 158.1 MiB/s | 2.7 MiB | 00m00s [147/166] Installing binutils-0:2.43.50 100% | 354.2 MiB/s | 25.9 MiB | 00m00s [148/166] Installing gdb-minimal-0:15.2 100% | 326.1 MiB/s | 13.0 MiB | 00m00s [149/166] Installing debugedit-0:5.1-4. 100% | 18.0 MiB/s | 203.1 KiB | 00m00s [150/166] Installing curl-0:8.11.1-4.fc 100% | 23.3 MiB/s | 453.1 KiB | 00m00s [151/166] Installing rpm-0:4.20.0-8.fc4 100% | 108.2 MiB/s | 2.5 MiB | 00m00s [152/166] Installing efi-srpm-macros-0: 100% | 0.0 B/s | 41.1 KiB | 00m00s [153/166] Installing tree-sitter-srpm-m 100% | 0.0 B/s | 7.4 KiB | 00m00s [154/166] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [155/166] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [156/166] Installing forge-srpm-macros- 100% | 0.0 B/s | 40.3 KiB | 00m00s [157/166] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 62.0 KiB | 00m00s [158/166] Installing fonts-srpm-macros- 100% | 0.0 B/s | 57.0 KiB | 00m00s [159/166] Installing python-srpm-macros 100% | 0.0 B/s | 52.2 KiB | 00m00s [160/166] Installing redhat-rpm-config- 100% | 94.5 MiB/s | 193.5 KiB | 00m00s [161/166] Installing rpm-build-0:4.20.0 100% | 14.1 MiB/s | 173.7 KiB | 00m00s [162/166] Installing pyproject-srpm-mac 100% | 0.0 B/s | 2.5 KiB | 00m00s [163/166] Installing authselect-0:1.5.0 100% | 14.2 MiB/s | 160.4 KiB | 00m00s [164/166] Installing which-0:2.23-1.fc4 100% | 8.4 MiB/s | 85.6 KiB | 00m00s [165/166] Installing info-0:7.2-3.fc42. 100% | 31.8 MiB/s | 358.3 KiB | 00m00s [166/166] Installing systemd-rpm-macros 100% | 7.8 KiB/s | 11.3 KiB | 00m01s Warning: skipped OpenPGP checks for 164 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.5.0-2.fc42.x86_64 alternatives-1.31-3.fc42.x86_64 ansible-srpm-macros-1-17.1.fc42.noarch audit-libs-4.0.3-2.fc42.x86_64 authselect-1.5.0-9.fc42.x86_64 authselect-libs-1.5.0-9.fc42.x86_64 basesystem-11-22.fc42.noarch bash-5.2.37-1.fc42.x86_64 binutils-2.43.50-12.fc42.x86_64 build-reproducibility-srpm-macros-0.5.0-2.fc42.noarch bzip2-1.0.8-20.fc42.x86_64 bzip2-libs-1.0.8-20.fc42.x86_64 ca-certificates-2024.2.69_v8.0.401-5.fc42.noarch coreutils-9.6-1.fc42.x86_64 coreutils-common-9.6-1.fc42.x86_64 cpio-2.15-2.fc41.x86_64 cracklib-2.9.11-7.fc42.x86_64 crypto-policies-20250124-1.git4d262e7.fc42.noarch curl-8.11.1-4.fc42.x86_64 cyrus-sasl-lib-2.1.28-30.fc42.x86_64 dbus-1.16.0-3.fc42.x86_64 dbus-broker-36-5.fc42.x86_64 dbus-common-1.16.0-3.fc42.noarch debugedit-5.1-4.fc42.x86_64 diffutils-3.10-9.fc42.x86_64 dwz-0.15-9.fc42.x86_64 ed-1.21-2.fc42.x86_64 efi-srpm-macros-6-2.fc42.noarch elfutils-0.192-8.fc42.x86_64 elfutils-debuginfod-client-0.192-8.fc42.x86_64 elfutils-default-yama-scope-0.192-8.fc42.noarch elfutils-libelf-0.192-8.fc42.x86_64 elfutils-libs-0.192-8.fc42.x86_64 expat-2.6.4-2.fc42.x86_64 fedora-gpg-keys-42-0.4.noarch fedora-release-42-0.16.noarch fedora-release-common-42-0.16.noarch fedora-release-identity-basic-42-0.16.noarch fedora-repos-42-0.4.noarch fedora-repos-rawhide-42-0.4.noarch file-5.46-1.fc42.x86_64 file-libs-5.46-1.fc42.x86_64 filesystem-3.18-36.fc42.x86_64 filesystem-srpm-macros-3.18-36.fc42.noarch findutils-4.10.0-5.fc42.x86_64 fonts-srpm-macros-2.0.5-21.fc42.noarch forge-srpm-macros-0.4.0-2.fc42.noarch fpc-srpm-macros-1.3-14.fc42.noarch gawk-5.3.1-1.fc42.x86_64 gdb-minimal-15.2-7.fc42.x86_64 gdbm-1.23-9.fc42.x86_64 gdbm-libs-1.23-9.fc42.x86_64 ghc-srpm-macros-1.9.2-2.fc42.noarch glibc-2.40.9000-35.fc42.x86_64 glibc-common-2.40.9000-35.fc42.x86_64 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package-notes-srpm-macros-0.5-13.fc42.noarch pam-1.7.0-4.fc42.x86_64 pam-libs-1.7.0-4.fc42.x86_64 patch-2.7.6-26.fc42.x86_64 pcre2-10.44-1.fc42.2.x86_64 pcre2-syntax-10.44-1.fc42.2.noarch perl-srpm-macros-1-57.fc42.noarch pkgconf-2.3.0-2.fc42.x86_64 pkgconf-m4-2.3.0-2.fc42.noarch pkgconf-pkg-config-2.3.0-2.fc42.x86_64 popt-1.19-8.fc42.x86_64 publicsuffix-list-dafsa-20250116-1.fc42.noarch pyproject-srpm-macros-1.16.4-2.fc42.noarch python-srpm-macros-3.13-4.fc42.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.8.2-1.fc42.noarch readline-8.2-12.fc42.x86_64 redhat-rpm-config-342-2.fc42.noarch rpm-4.20.0-8.fc42.x86_64 rpm-build-4.20.0-8.fc42.x86_64 rpm-build-libs-4.20.0-8.fc42.x86_64 rpm-libs-4.20.0-8.fc42.x86_64 rpm-sequoia-1.7.0-4.fc42.x86_64 rust-srpm-macros-26.3-4.fc42.noarch sed-4.9-4.fc42.x86_64 setup-2.15.0-10.fc42.noarch shadow-utils-4.17.0-4.fc42.x86_64 sqlite-libs-3.47.2-2.fc42.x86_64 systemd-257.2-17.fc42.x86_64 systemd-libs-257.2-17.fc42.x86_64 systemd-pam-257.2-17.fc42.x86_64 systemd-rpm-macros-257.2-17.fc42.noarch tar-1.35-5.fc42.x86_64 tree-sitter-srpm-macros-0.1.0-8.fc42.noarch unzip-6.0-66.fc42.x86_64 util-linux-2.40.4-2.fc42.x86_64 util-linux-core-2.40.4-2.fc42.x86_64 which-2.23-1.fc42.x86_64 xxhash-libs-0.8.3-2.fc42.x86_64 xz-5.6.3-3.fc42.x86_64 xz-libs-5.6.3-3.fc42.x86_64 zig-srpm-macros-1-4.fc42.noarch zip-3.0-43.fc42.x86_64 zlib-ng-compat-2.2.3-2.fc42.x86_64 zstd-1.5.6-3.fc42.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1738627200 Wrote: /builddir/build/SRPMS/libsonata-0.1.29-1.fc42.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-x86_64-1738675768.824783/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-q8zv6a7g/libsonata/libsonata.spec) Config(child) 0 minutes 10 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/libsonata-0.1.29-1.fc42.src.rpm) Config(fedora-41-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1738675768.824783/root. INFO: reusing tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1738675768.824783/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1738675768.824783/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc41.x86_64 rpm-sequoia-1.7.0-3.fc41.x86_64 dnf5-5.2.8.1-3.fc41.x86_64 dnf5-plugins-5.2.8.1-3.fc41.x86_64 Finish: chroot init Start: build phase for libsonata-0.1.29-1.fc42.src.rpm Start: build setup for libsonata-0.1.29-1.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1738627200 Wrote: /builddir/build/SRPMS/libsonata-0.1.29-1.fc42.src.rpm Updating and loading repositories: updates 100% | 220.9 KiB/s | 10.8 KiB | 00m00s fedora 100% | 113.0 KiB/s | 32.6 KiB | 00m00s Copr repository 100% | 85.4 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 191.5 KiB/s | 3.8 KiB | 00m00s Repositories loaded. 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0.7.7-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 768.3 KiB xvidcore x86_64 1.3.7-13.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 878.4 KiB zeromq x86_64 4.3.5-21.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 890.1 KiB zimg x86_64 3.0.5-3.fc41 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 821.4 KiB zlib-ng x86_64 2.2.3-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 157.0 KiB zlib-ng-compat-devel x86_64 2.2.3-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 107.0 KiB zvbi x86_64 0.2.43-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB Transaction Summary: Installing: 436 packages Total size of inbound packages is 445 MiB. Need to download 0 B. After this operation, 2 GiB extra will be used (install 2 GiB, remove 0 B). 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file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. 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Finish: build setup for libsonata-0.1.29-1.fc42.src.rpm Start: rpmbuild libsonata-0.1.29-1.fc42.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1738627200 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.Jm5auc + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.29-build + test -d /builddir/build/BUILD/libsonata-0.1.29-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/libsonata-0.1.29-build + /usr/bin/rm -rf /builddir/build/BUILD/libsonata-0.1.29-build + /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.29-build + /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.29-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Jkh3rr + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.29-build + cd /builddir/build/BUILD/libsonata-0.1.29-build + rm -rf libsonata-0.1.29 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/libsonata-0.1.29.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd libsonata-0.1.29 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/git init -q + /usr/bin/git config user.name rpm-build + /usr/bin/git config user.email '' + /usr/bin/git config gc.auto 0 + /usr/bin/git add --force . + GIT_COMMITTER_DATE=@1738627200 + GIT_AUTHOR_DATE=@1738627200 + /usr/bin/git commit -q --allow-empty -a --author 'rpm-build ' -m 'libsonata-0.1.29 base' + /usr/bin/git checkout --track -b rpm-build Switched to a new branch 'rpm-build' branch 'rpm-build' set up to track 'master'. + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-Remove-pybind-redeclarations.patch + /usr/bin/git apply --index --reject - Checking patch python/bindings.cpp... Applied patch python/bindings.cpp cleanly. + GIT_COMMITTER_DATE=@1738627200 + GIT_AUTHOR_DATE=@1738627200 + /usr/bin/git commit -q -m 0001-Remove-pybind-redeclarations.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0002-Use-std-filesystem.patch + /usr/bin/git apply --index --reject - Checking patch CMakeLists.txt... Checking patch extlib/filesystem.hpp... Checking patch src/config.cpp... Checking patch src/node_sets.cpp... Checking patch src/utils.cpp... Applied patch CMakeLists.txt cleanly. Applied patch extlib/filesystem.hpp cleanly. Applied patch src/config.cpp cleanly. Applied patch src/node_sets.cpp cleanly. Applied patch src/utils.cpp cleanly. + GIT_COMMITTER_DATE=@1738627200 + GIT_AUTHOR_DATE=@1738627200 + /usr/bin/git commit -q -m 0002-Use-std-filesystem.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0003-Substitute-ghc-in-tests.patch + /usr/bin/git apply --index --reject - Checking patch tests/test_config.cpp... Applied patch tests/test_config.cpp cleanly. + GIT_COMMITTER_DATE=@1738627200 + GIT_AUTHOR_DATE=@1738627200 + /usr/bin/git commit -q -m 0003-Substitute-ghc-in-tests.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0004-Include-catch-catch_all.hpp-instead-of-catch-catch.h.patch + /usr/bin/git apply --index --reject - Checking patch tests/main.cpp... Checking patch tests/test_config.cpp... Checking patch tests/test_edges.cpp... Checking patch tests/test_node_sets.cpp... Checking patch tests/test_nodes.cpp... Checking patch tests/test_report_reader.cpp... Checking patch tests/test_selection.cpp... Applied patch tests/main.cpp cleanly. Applied patch tests/test_config.cpp cleanly. Applied patch tests/test_edges.cpp cleanly. Applied patch tests/test_node_sets.cpp cleanly. Applied patch tests/test_nodes.cpp cleanly. Applied patch tests/test_report_reader.cpp cleanly. Applied patch tests/test_selection.cpp cleanly. + GIT_COMMITTER_DATE=@1738627200 + GIT_AUTHOR_DATE=@1738627200 + /usr/bin/git commit -q -m 0004-Include-catch-catch_all.hpp-instead-of-catch-catch.h.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0005-Link-Catch2-Catch2WithMain-instead-of-Catch2-Catch2.patch + /usr/bin/git apply --index --reject - Checking patch tests/CMakeLists.txt... Applied patch tests/CMakeLists.txt cleanly. + GIT_COMMITTER_DATE=@1738627200 + GIT_AUTHOR_DATE=@1738627200 + /usr/bin/git commit -q -m 0005-Link-Catch2-Catch2WithMain-instead-of-Catch2-Catch2.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/1.patch + /usr/bin/git apply --index --reject - Checking patch CMakeLists.txt... Applied patch CMakeLists.txt cleanly. + GIT_COMMITTER_DATE=@1738627200 + GIT_AUTHOR_DATE=@1738627200 + /usr/bin/git commit -q -m 1.patch --author 'rpm-build ' + rm -rf libsonata.egg-info + rm -rf extlib/Catch2 extlib/Highfive extlib/fmt extlib/nlohmann + echo '#include ' + echo '#include ' + echo '#include ' + sed -r -i 's/(-DEXTLIB_FROM_SUBMODULES=)ON/\1OFF/' setup.py + tomcli set pyproject.toml lists replace build-system.requires oldest-supported-numpy numpy + pushd tests/data ~/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/data ~/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29 + rm nodes1.h5 edges1.h5 spikes.h5 somas.h5 elements.h5 + popd ~/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.yAscu4 + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.29-build + cd libsonata-0.1.29 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/pyproject-wheeldir --output /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc42.x86_64-pyproject-buildrequires Handling cmake from build-system.requires Requirement not satisfied: cmake Handling numpy from build-system.requires Requirement satisfied: numpy (installed: numpy 2.2.2) Handling setuptools from build-system.requires Requirement not satisfied: setuptools Handling wheel from build-system.requires Requirement not satisfied: wheel Exiting dependency generation pass: build backend + cat /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc42.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/libsonata-0.1.29-1.fc42.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 424.0 KiB/s | 32.6 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 191.5 KiB/s | 3.8 KiB | 00m00s updates 100% | 64.8 KiB/s | 10.8 KiB | 00m00s Copr repository 100% | 90.4 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "cmake-3.31.5-1.fc42.x86_64" is already installed. Package "catch-devel-3.8.0-2.fc42.x86_64" is already installed. Package "highfive-devel-2.10.0-4.fc42.x86_64" is already installed. Package "fmt-devel-11.1.2-2.fc42.x86_64" is already installed. Package "pybind11-devel-2.13.6-2.fc42.x86_64" is already installed. Package "gcc-c++-15.0.1-0.6.fc42.x86_64" is already installed. Package "git-core-2.48.1-2.fc42.x86_64" is already installed. Package "hdf5-devel-1.14.5-2.fc42.x86_64" is already installed. Package "ninja-build-1.12.1-4.fc42.x86_64" is already installed. Package "optional-lite-devel-3.6.0-5.fc42.x86_64" is already installed. Package "pyproject-rpm-macros-1.16.4-2.fc42.noarch" is already installed. Package "python3-devel-3.13.1-4.fc42.x86_64" is already installed. Package "python3-h5py-3.12.1-5.fc42.x86_64" is already installed. Package "python3-numpy-1:2.2.2-2.fc42.x86_64" is already installed. Package "python3-packaging-24.2-3.fc42.noarch" is already installed. Package "python3-pytest-8.3.4-2.fc42.noarch" is already installed. Package "tomcli-0.8.0-2.fc42.noarch" is already installed. Package "variant-lite-devel-2.0.0-1.fc42.x86_64" is already installed. Package Arch Version Repository Size Installing: python3-cmake noarch 3.31.5-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 290.0 B python3-pip noarch 24.3.1-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.3 MiB python3-setuptools noarch 74.1.3-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.4 MiB python3-wheel noarch 1:0.45.1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 541.9 KiB Transaction Summary: Installing: 4 packages Total size of inbound packages is 5 MiB. Need to download 0 B. After this operation, 20 MiB extra will be used (install 20 MiB, remove 0 B). [1/1] python3-cmake-0:3.31.5-1.fc42.noa 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [1/1] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/2] python3-pip-0:24.3.1-2.fc42.noarc 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [2/2] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/3] python3-setuptools-0:74.1.3-5.fc4 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [3/3] Total 100% | 0.0 B/s | 0.0 B | 00m00s [1/4] python3-wheel-1:0.45.1-3.fc42.noa 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [4/4] Total 100% | 0.0 B/s | 0.0 B | 00m00s Running transaction [1/6] Verify package files 100% | 333.0 B/s | 4.0 B | 00m00s [2/6] Prepare transaction 100% | 129.0 B/s | 4.0 B | 00m00s [3/6] Installing python3-wheel-1:0.45.1 100% | 36.6 MiB/s | 562.0 KiB | 00m00s [4/6] Installing python3-setuptools-0:7 100% | 244.6 MiB/s | 8.6 MiB | 00m00s [5/6] Installing python3-pip-0:24.3.1-2 100% | 211.2 MiB/s | 11.6 MiB | 00m00s [6/6] Installing python3-cmake-0:3.31.5 100% | 25.6 KiB/s | 944.0 B | 00m00s Warning: skipped OpenPGP checks for 4 packages from repository: http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1738627200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.L3M6DI + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.29-build + cd libsonata-0.1.29 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/pyproject-wheeldir --output /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc42.x86_64-pyproject-buildrequires Handling cmake from build-system.requires Requirement satisfied: cmake (installed: cmake 3.31.5) Handling numpy from build-system.requires Requirement satisfied: numpy (installed: numpy 2.2.2) Handling setuptools from build-system.requires Requirement satisfied: setuptools (installed: setuptools 74.1.3) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.45.1) Handling setuptools_scm from get_requires_for_build_wheel Requirement not satisfied: setuptools_scm Exiting dependency generation pass: get_requires_for_build_wheel + cat /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc42.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/libsonata-0.1.29-1.fc42.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: updates 100% | 72.6 KiB/s | 10.8 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 201.5 KiB/s | 3.8 KiB | 00m00s fedora 100% | 1.2 MiB/s | 32.6 KiB | 00m00s Copr repository 100% | 128.1 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Package "cmake-3.31.5-1.fc42.x86_64" is already installed. Package "catch-devel-3.8.0-2.fc42.x86_64" is already installed. Package "highfive-devel-2.10.0-4.fc42.x86_64" is already installed. Package "fmt-devel-11.1.2-2.fc42.x86_64" is already installed. Package "pybind11-devel-2.13.6-2.fc42.x86_64" is already installed. Package "gcc-c++-15.0.1-0.6.fc42.x86_64" is already installed. Package "git-core-2.48.1-2.fc42.x86_64" is already installed. Package "hdf5-devel-1.14.5-2.fc42.x86_64" is already installed. Package "ninja-build-1.12.1-4.fc42.x86_64" is already installed. Package "optional-lite-devel-3.6.0-5.fc42.x86_64" is already installed. Package "pyproject-rpm-macros-1.16.4-2.fc42.noarch" is already installed. Package "python3-devel-3.13.1-4.fc42.x86_64" is already installed. Package "python3-cmake-3.31.5-1.fc42.noarch" is already installed. Package "python3-h5py-3.12.1-5.fc42.x86_64" is already installed. Package "python3-numpy-1:2.2.2-2.fc42.x86_64" is already installed. Package "python3-packaging-24.2-3.fc42.noarch" is already installed. Package "python3-pip-24.3.1-2.fc42.noarch" is already installed. Package "python3-pytest-8.3.4-2.fc42.noarch" is already installed. Package "python3-setuptools-74.1.3-5.fc42.noarch" is already installed. Package "python3-wheel-1:0.45.1-3.fc42.noarch" is already installed. Package "tomcli-0.8.0-2.fc42.noarch" is already installed. Package "variant-lite-devel-2.0.0-1.fc42.x86_64" is already installed. Package Arch Version Repository Size Installing: python3-setuptools_scm noarch 8.1.0-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 319.6 KiB Transaction Summary: Installing: 1 package Total size of inbound packages is 102 KiB. Need to download 0 B. After this operation, 320 KiB extra will be used (install 320 KiB, remove 0 B). [1/1] python3-setuptools_scm-0:8.1.0-2. 100% | 0.0 B/s | 0.0 B | 00m00s >>> Already downloaded -------------------------------------------------------------------------------- [1/1] Total 100% | 0.0 B/s | 0.0 B | 00m00s Running transaction [1/3] Verify package files 100% | 0.0 B/s | 1.0 B | 00m00s [2/3] Prepare transaction 100% | 55.0 B/s | 1.0 B | 00m00s [3/3] Installing python3-setuptools_scm 100% | 9.2 MiB/s | 339.3 KiB | 00m00s Warning: skipped OpenPGP checks for 1 package from repository: http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Complete! Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1738627200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.pid1At + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.29-build + cd libsonata-0.1.29 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/pyproject-wheeldir --output /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc42.x86_64-pyproject-buildrequires Handling cmake from build-system.requires Requirement satisfied: cmake (installed: cmake 3.31.5) Handling numpy from build-system.requires Requirement satisfied: numpy (installed: numpy 2.2.2) Handling setuptools from build-system.requires Requirement satisfied: setuptools (installed: setuptools 74.1.3) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.45.1) Handling setuptools_scm from get_requires_for_build_wheel Requirement satisfied: setuptools_scm (installed: setuptools_scm 8.1.0) WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running dist_info creating libsonata.egg-info writing libsonata.egg-info/PKG-INFO writing dependency_links to libsonata.egg-info/dependency_links.txt writing requirements to libsonata.egg-info/requires.txt writing top-level names to libsonata.egg-info/top_level.txt writing manifest file 'libsonata.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'extlib/nlohmann/json.hpp' warning: no files found matching '*' under directory 'extlib/fmt/include' warning: no files found matching '*' under directory 'extlib/fmt/src' warning: no files found matching '*' under directory 'extlib/fmt/support/cmake' warning: no files found matching 'extlib/fmt/CMakeLists.txt' warning: no files found matching 'extlib/fmt/*.rst' warning: no files found matching 'extlib/fmt/README.md' warning: no files found matching 'extlib/fmt/ChangeLog.md' warning: no files found matching '*' under directory 'extlib/HighFive/include' warning: no files found matching 'extlib/HighFive/CMakeLists.txt' warning: no files found matching 'extlib/HighFive/LICENSE' warning: no files found matching '*' under directory 'python/pybind11/include' warning: no files found matching '*.cmake' under directory 'python/pybind11/tools' warning: no files found matching 'python/pybind11/CMakeLists.txt' warning: no files found matching 'python/pybind11/LICENSE' adding license file 'COPYING' adding license file 'COPYING.LESSER' adding license file 'AUTHORS.txt' writing manifest file 'libsonata.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/libsonata-0.1.dev7.dist-info' Handling numpy>=1.17.3 from hook generated metadata: Requires-Dist (libsonata) Requirement satisfied: numpy>=1.17.3 (installed: numpy 2.2.2) Handling sphinx-bluebrain-theme; extra == "docs" from hook generated metadata: Requires-Dist (libsonata) Ignoring alien requirement: sphinx-bluebrain-theme; extra == "docs" + cat /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc42.x86_64-pyproject-buildrequires + rm -rfv libsonata-0.1.dev7.dist-info/ removed 'libsonata-0.1.dev7.dist-info/top_level.txt' removed 'libsonata-0.1.dev7.dist-info/METADATA' removed 'libsonata-0.1.dev7.dist-info/COPYING' removed 'libsonata-0.1.dev7.dist-info/COPYING.LESSER' removed 'libsonata-0.1.dev7.dist-info/AUTHORS.txt' removed directory 'libsonata-0.1.dev7.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/libsonata-0.1.29-1.fc42.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 310.9 KiB/s | 32.6 KiB | 00m00s updates 100% | 416.3 KiB/s | 10.8 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 191.5 KiB/s | 3.8 KiB | 00m00s Copr repository 100% | 139.7 KiB/s | 1.5 KiB | 00m00s Repositories loaded. Nothing to do. Package "cmake-3.31.5-1.fc42.x86_64" is already installed. Package "catch-devel-3.8.0-2.fc42.x86_64" is already installed. Package "highfive-devel-2.10.0-4.fc42.x86_64" is already installed. Package "fmt-devel-11.1.2-2.fc42.x86_64" is already installed. Package "pybind11-devel-2.13.6-2.fc42.x86_64" is already installed. Package "gcc-c++-15.0.1-0.6.fc42.x86_64" is already installed. Package "git-core-2.48.1-2.fc42.x86_64" is already installed. Package "hdf5-devel-1.14.5-2.fc42.x86_64" is already installed. Package "ninja-build-1.12.1-4.fc42.x86_64" is already installed. Package "optional-lite-devel-3.6.0-5.fc42.x86_64" is already installed. Package "pyproject-rpm-macros-1.16.4-2.fc42.noarch" is already installed. Package "python3-devel-3.13.1-4.fc42.x86_64" is already installed. Package "python3-cmake-3.31.5-1.fc42.noarch" is already installed. Package "python3-h5py-3.12.1-5.fc42.x86_64" is already installed. Package "python3-numpy-1:2.2.2-2.fc42.x86_64" is already installed. Package "python3-numpy-1:2.2.2-2.fc42.x86_64" is already installed. Package "python3-packaging-24.2-3.fc42.noarch" is already installed. Package "python3-pip-24.3.1-2.fc42.noarch" is already installed. Package "python3-pytest-8.3.4-2.fc42.noarch" is already installed. Package "python3-setuptools-74.1.3-5.fc42.noarch" is already installed. Package "python3-setuptools_scm-8.1.0-2.fc42.noarch" is already installed. Package "python3-wheel-1:0.45.1-3.fc42.noarch" is already installed. Package "tomcli-0.8.0-2.fc42.noarch" is already installed. Package "variant-lite-devel-2.0.0-1.fc42.x86_64" is already installed. Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1738627200 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.YMhYgW + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.29-build + cd libsonata-0.1.29 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/pyproject-wheeldir --output /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc42.x86_64-pyproject-buildrequires Handling cmake from build-system.requires Requirement satisfied: cmake (installed: cmake 3.31.5) Handling numpy from build-system.requires Requirement satisfied: numpy (installed: numpy 2.2.2) Handling setuptools from build-system.requires Requirement satisfied: setuptools (installed: setuptools 74.1.3) Handling wheel from build-system.requires Requirement satisfied: wheel (installed: wheel 0.45.1) Handling setuptools_scm from get_requires_for_build_wheel Requirement satisfied: setuptools_scm (installed: setuptools_scm 8.1.0) WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running dist_info writing libsonata.egg-info/PKG-INFO writing dependency_links to libsonata.egg-info/dependency_links.txt writing requirements to libsonata.egg-info/requires.txt writing top-level names to libsonata.egg-info/top_level.txt reading manifest template 'MANIFEST.in' warning: no files found matching 'extlib/nlohmann/json.hpp' warning: no files found matching '*' under directory 'extlib/fmt/include' warning: no files found matching '*' under directory 'extlib/fmt/src' warning: no files found matching '*' under directory 'extlib/fmt/support/cmake' warning: no files found matching 'extlib/fmt/CMakeLists.txt' warning: no files found matching 'extlib/fmt/*.rst' warning: no files found matching 'extlib/fmt/README.md' warning: no files found matching 'extlib/fmt/ChangeLog.md' warning: no files found matching '*' under directory 'extlib/HighFive/include' warning: no files found matching 'extlib/HighFive/CMakeLists.txt' warning: no files found matching 'extlib/HighFive/LICENSE' warning: no files found matching '*' under directory 'python/pybind11/include' warning: no files found matching '*.cmake' under directory 'python/pybind11/tools' warning: no files found matching 'python/pybind11/CMakeLists.txt' warning: no files found matching 'python/pybind11/LICENSE' adding license file 'COPYING' adding license file 'COPYING.LESSER' adding license file 'AUTHORS.txt' writing manifest file 'libsonata.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/libsonata-0.1.dev7.dist-info' Handling numpy>=1.17.3 from hook generated metadata: Requires-Dist (libsonata) Requirement satisfied: numpy>=1.17.3 (installed: numpy 2.2.2) Handling sphinx-bluebrain-theme; extra == "docs" from hook generated metadata: Requires-Dist (libsonata) Ignoring alien requirement: sphinx-bluebrain-theme; extra == "docs" + cat /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc42.x86_64-pyproject-buildrequires + rm -rfv libsonata-0.1.dev7.dist-info/ removed 'libsonata-0.1.dev7.dist-info/top_level.txt' removed 'libsonata-0.1.dev7.dist-info/METADATA' removed 'libsonata-0.1.dev7.dist-info/COPYING' removed 'libsonata-0.1.dev7.dist-info/COPYING.LESSER' removed 'libsonata-0.1.dev7.dist-info/AUTHORS.txt' removed directory 'libsonata-0.1.dev7.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.ncwCJO + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.29-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsonata-0.1.29 + export CMAKE_GENERATOR=Ninja + CMAKE_GENERATOR=Ninja + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/bin -DCMAKE_INSTALL_SBINDIR:PATH=bin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DEXTLIB_FROM_SUBMODULES:BOOL=OFF -DSONATA_CXX_WARNINGS:BOOL=OFF -DSONATA_PYTHON:BOOL=OFF -DSONATA_TESTS:BOOL=ON -DSONATA_VERSION=0.1.29 -- The C compiler identification is GNU 15.0.1 -- The CXX compiler identification is GNU 15.0.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- HIGHFIVE 2.10.0: (Re)Detecting Highfive dependencies (HIGHFIVE_USE_INSTALL_DEPS=NO) -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.14.5") CMake Warning (dev) at /usr/lib64/cmake/HighFive/HighFiveTargetDeps.cmake:55 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/lib64/cmake/HighFive/HighFiveConfig.cmake:93 (include) CMakeLists.txt:83 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/include (found version "1.83.0") found components: system serialization -- Found nlohmann_json: /usr/share/cmake/nlohmann_json/nlohmann_jsonConfig.cmake (found version "3.11.3") -- Configuring done (0.5s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_VERBOSE_MAKEFILE INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j4 --verbose Change Dir: '/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/redhat-linux-build' Run Build Command(s): /usr/bin/ninja-build -v -j 4 [1/37] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 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CMakeFiles/sonata_shared.dir/src/population.cpp.o -MF CMakeFiles/sonata_shared.dir/src/population.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/population.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/population.cpp [8/37] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden 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CMakeFiles/sonata_static.dir/src/report_reader.cpp.o CMakeFiles/sonata_static.dir/src/selection.cpp.o CMakeFiles/sonata_static.dir/src/utils.cpp.o CMakeFiles/sonata_static.dir/src/version.cpp.o && /usr/bin/ranlib libsonata.a && : [34/37] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o -MF tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_report_reader.cpp In file included from /usr/include/catch2/benchmark/catch_benchmark.hpp:14, from /usr/include/catch2/benchmark/catch_benchmark_all.hpp:24, from /usr/include/catch2/catch_all.hpp:25, from /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_report_reader.cpp:1: /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_report_reader.cpp: In function ‘void testTimes(const std::vector&, double, double, int)’: /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_report_reader.cpp:8:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 8 | REQUIRE(size == vec.size()); | ~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_report_reader.cpp:9:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 9 | for (int i = 0; i < vec.size(); ++i) { | ~~^~~~~~~~~~~~ [35/37] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_selection.cpp.o -MF tests/CMakeFiles/unittests.dir/test_selection.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_selection.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_selection.cpp [36/37] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_config.cpp.o -MF tests/CMakeFiles/unittests.dir/test_config.cpp.o.d -o tests/CMakeFiles/unittests.dir/test_config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_config.cpp In file included from /usr/include/catch2/catch_test_macros.hpp:11, from /usr/include/catch2/catch_template_test_macros.hpp:20, from /usr/include/catch2/catch_all.hpp:37, from /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_config.cpp:1: /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_config.cpp: In function ‘void CATCH2_INTERNAL_TEST_0()’: /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_config.cpp:50:44: warning: ignoring return value of ‘static nlohmann::json_abi_v3_11_3::basic_json nlohmann::json_abi_v3_11_3::basic_json::parse(InputType&&, parser_callback_t, bool, bool) [with InputType = const std::__cxx11::basic_string&; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector; CustomBaseClass = void; parser_callback_t = std::function&)>]’, declared with attribute ‘warn_unused_result’ [-Wunused-result] 50 | CHECK_NOTHROW(nlohmann::json::parse(config.getExpandedJSON())); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_config.cpp:3: /usr/include/nlohmann/json.hpp:4015:23: note: declared here 4015 | static basic_json parse(InputType&& i, | ^~~~~ /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_config.cpp: In function ‘void CATCH2_INTERNAL_TEST_5()’: /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/test_config.cpp:389:44: warning: ignoring return value of ‘static nlohmann::json_abi_v3_11_3::basic_json nlohmann::json_abi_v3_11_3::basic_json::parse(InputType&&, parser_callback_t, bool, bool) [with InputType = const std::__cxx11::basic_string&; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector; CustomBaseClass = void; parser_callback_t = std::function&)>]’, declared with attribute ‘warn_unused_result’ [-Wunused-result] 389 | CHECK_NOTHROW(nlohmann::json::parse(config.getExpandedJSON())); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/nlohmann/json.hpp:4015:23: note: declared here 4015 | static basic_json parse(InputType&& i, | ^~~~~ [37/37] : && /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=tests/CMakeFiles/unittests.dir/link.d tests/CMakeFiles/unittests.dir/main.cpp.o tests/CMakeFiles/unittests.dir/test_config.cpp.o tests/CMakeFiles/unittests.dir/test_edges.cpp.o tests/CMakeFiles/unittests.dir/test_node_sets.cpp.o tests/CMakeFiles/unittests.dir/test_nodes.cpp.o tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o tests/CMakeFiles/unittests.dir/test_selection.cpp.o -o tests/unittests -Wl,-rpath,/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/redhat-linux-build libsonata.so.0.1.29 /usr/lib64/libCatch2Main.so.3.8.0 /usr/lib64/libhdf5.so /usr/lib64/libCatch2.so.3.8.0 && cd /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/redhat-linux-build/tests && /usr/bin/cmake -D TEST_TARGET=unittests -D TEST_EXECUTABLE=/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/redhat-linux-build/tests/unittests -D TEST_EXECUTOR= -D TEST_WORKING_DIR=/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests -D TEST_SPEC= -D TEST_EXTRA_ARGS= -D "TEST_PROPERTIES=SKIP_RETURN_CODE;4" -D TEST_PREFIX= -D TEST_SUFFIX= -D TEST_LIST=unittests_TESTS -D TEST_REPORTER= -D TEST_OUTPUT_DIR= -D TEST_OUTPUT_PREFIX= -D TEST_OUTPUT_SUFFIX= -D TEST_DL_PATHS= -D TEST_DL_FRAMEWORK_PATHS= -D CTEST_FILE=/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/redhat-linux-build/tests/unittests-b12d07c_tests.cmake -D ADD_TAGS_AS_LABELS=FALSE -P /usr/lib64/cmake/Catch2/CatchAddTests.cmake + export SETUPTOOLS_SCM_PRETEND_VERSION=0.1.29 + SETUPTOOLS_SCM_PRETEND_VERSION=0.1.29 + export SONATA_BUILD_TYPE=RelWithDebInfo + SONATA_BUILD_TYPE=RelWithDebInfo + export VERBOSE= + VERBOSE= + mkdir -p /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/pyproject-wheeldir Processing /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running dist_info creating /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir/pip-modern-metadata-mjv036h1/libsonata.egg-info writing /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir/pip-modern-metadata-mjv036h1/libsonata.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir/pip-modern-metadata-mjv036h1/libsonata.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir/pip-modern-metadata-mjv036h1/libsonata.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir/pip-modern-metadata-mjv036h1/libsonata.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir/pip-modern-metadata-mjv036h1/libsonata.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'extlib/nlohmann/json.hpp' warning: no files found matching '*' under directory 'extlib/fmt/include' warning: no files found matching '*' under directory 'extlib/fmt/src' warning: no files found matching '*' under directory 'extlib/fmt/support/cmake' warning: no files found matching 'extlib/fmt/CMakeLists.txt' warning: no files found matching 'extlib/fmt/*.rst' warning: no files found matching 'extlib/fmt/README.md' warning: no files found matching 'extlib/fmt/ChangeLog.md' warning: no files found matching '*' under directory 'extlib/HighFive/include' warning: no files found matching 'extlib/HighFive/CMakeLists.txt' warning: no files found matching 'extlib/HighFive/LICENSE' warning: no files found matching '*' under directory 'python/pybind11/include' warning: no files found matching '*.cmake' under directory 'python/pybind11/tools' warning: no files found matching 'python/pybind11/CMakeLists.txt' warning: no files found matching 'python/pybind11/LICENSE' adding license file 'COPYING' adding license file 'COPYING.LESSER' adding license file 'AUTHORS.txt' writing manifest file '/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir/pip-modern-metadata-mjv036h1/libsonata.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir/pip-modern-metadata-mjv036h1/libsonata-0.1.29.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: libsonata Building wheel for libsonata (pyproject.toml): started Running command Building wheel for libsonata (pyproject.toml) WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' Traceback (most recent call last): File "/usr/lib/python3.13/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject section = defn.get("tool", {})[tool_name] ~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ KeyError: 'setuptools_scm' running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-313 creating build/lib.linux-x86_64-cpython-313/libsonata copying python/libsonata/__init__.py -> build/lib.linux-x86_64-cpython-313/libsonata running build_ext Re-run cmake no build system arguments -- The C compiler identification is GNU 15.0.1 -- The CXX compiler identification is GNU 15.0.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- HIGHFIVE 2.10.0: (Re)Detecting Highfive dependencies (HIGHFIVE_USE_INSTALL_DEPS=NO) -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.14.5") CMake Warning (dev) at /usr/lib64/cmake/HighFive/HighFiveTargetDeps.cmake:55 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/lib64/cmake/HighFive/HighFiveConfig.cmake:93 (include) CMakeLists.txt:83 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/include (found version "1.83.0") found components: system serialization -- Found nlohmann_json: /usr/share/cmake/nlohmann_json/nlohmann_jsonConfig.cmake (found version "3.11.3") CMake Warning (dev) at /usr/share/cmake/pybind11/FindPythonLibsNew.cmake:101 (message): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning, or preferably upgrade to using FindPython, either by calling it explicitly before pybind11, or by setting PYBIND11_FINDPYTHON ON before pybind11. Call Stack (most recent call first): /usr/share/cmake/pybind11/pybind11Tools.cmake:50 (find_package) /usr/share/cmake/pybind11/pybind11Common.cmake:228 (include) /usr/share/cmake/pybind11/pybind11Config.cmake:250 (include) python/CMakeLists.txt:6 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13.1", minimum required is "3.7") -- Found PythonLibs: /usr/lib64/libpython3.13.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.13.6") -- Warning: this does not have an effect - use NO_SYSTEM_FROM_IMPORTED if using imported targets -- Configuring done (0.6s) -- Generating done (0.0s) -- Build files have been written to: /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/build/temp.linux-x86_64-cpython-313 Change Dir: '/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/build/temp.linux-x86_64-cpython-313' Run Build Command(s): /usr/bin/ninja-build -v -j4 sonata_python [1/16] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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CMakeFiles/sonata_static.dir/src/utils.cpp.o -MF CMakeFiles/sonata_static.dir/src/utils.cpp.o.d -o CMakeFiles/sonata_static.dir/src/utils.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/utils.cpp [10/16] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DVERSION_INFO=\"0.1.29\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/version.cpp.o -MF CMakeFiles/sonata_static.dir/src/version.cpp.o.d -o CMakeFiles/sonata_static.dir/src/version.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/build/temp.linux-x86_64-cpython-313/src/version.cpp [11/16] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DVERSION_INFO=\"0.1.29\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/selection.cpp.o -MF CMakeFiles/sonata_static.dir/src/selection.cpp.o.d -o CMakeFiles/sonata_static.dir/src/selection.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/selection.cpp [12/16] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DVERSION_INFO=\"0.1.29\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/config.cpp.o -MF CMakeFiles/sonata_static.dir/src/config.cpp.o.d -o CMakeFiles/sonata_static.dir/src/config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/config.cpp [13/16] /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DVERSION_INFO=\"0.1.29\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/report_reader.cpp.o -MF CMakeFiles/sonata_static.dir/src/report_reader.cpp.o.d -o CMakeFiles/sonata_static.dir/src/report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/src/report_reader.cpp [14/16] : && /usr/bin/cmake -E rm -f libsonata.a && /usr/bin/ar qc libsonata.a CMakeFiles/sonata_static.dir/src/common.cpp.o CMakeFiles/sonata_static.dir/src/config.cpp.o CMakeFiles/sonata_static.dir/src/edge_index.cpp.o CMakeFiles/sonata_static.dir/src/edges.cpp.o CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o CMakeFiles/sonata_static.dir/src/hdf5_reader.cpp.o CMakeFiles/sonata_static.dir/src/node_sets.cpp.o CMakeFiles/sonata_static.dir/src/nodes.cpp.o CMakeFiles/sonata_static.dir/src/population.cpp.o CMakeFiles/sonata_static.dir/src/report_reader.cpp.o CMakeFiles/sonata_static.dir/src/selection.cpp.o CMakeFiles/sonata_static.dir/src/utils.cpp.o CMakeFiles/sonata_static.dir/src/version.cpp.o && /usr/bin/ranlib libsonata.a && : [15/16] /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -Dsonata_python_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include -isystem /usr/include/python3.13 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DVERSION_INFO=\"0.1.29\" -O2 -g -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT python/CMakeFiles/sonata_python.dir/bindings.cpp.o -MF python/CMakeFiles/sonata_python.dir/bindings.cpp.o.d -o python/CMakeFiles/sonata_python.dir/bindings.cpp.o -c /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/python/bindings.cpp /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/python/bindings.cpp: In lambda function: /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/python/bindings.cpp:429:39: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘pybind11::ssize_t’ {aka ‘long int’} [-Wsign-compare] 429 | for (size_t i = 0; i < raw.shape(0); ++i) { | ~~^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include/bbp/sonata/hdf5_reader.h:6, from /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include/bbp/sonata/population.h:22, from /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include/bbp/sonata/edges.h:13, from /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include/bbp/sonata/config.h:19, from /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/python/bindings.cpp:6: /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include/bbp/sonata/selection.h: In instantiation of ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = const long int*]’: /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/python/bindings.cpp:435:46: required from here 435 | return Selection::fromValues(raw.data(0), raw.data(raw.shape(0))); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/include/bbp/sonata/selection.h:60:15: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘long unsigned int’ [-Wsign-compare] 60 | if (v == std::get<1>(range)) { | ~~^~~~~~~~~~~~~~~~~~~~~ [16/16] : && /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DVERSION_INFO=\"0.1.29\" -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file=python/CMakeFiles/sonata_python.dir/link.d -shared -o /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/build/lib.linux-x86_64-cpython-313/libsonata/_libsonata.cpython-313-x86_64-linux-gnu.so python/CMakeFiles/sonata_python.dir/bindings.cpp.o libsonata.a /usr/lib64/libhdf5.so && : installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/libsonata copying build/lib.linux-x86_64-cpython-313/libsonata/__init__.py -> build/bdist.linux-x86_64/wheel/./libsonata copying build/lib.linux-x86_64-cpython-313/libsonata/_libsonata.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./libsonata running install_egg_info running egg_info creating python/libsonata.egg-info writing python/libsonata.egg-info/PKG-INFO writing dependency_links to python/libsonata.egg-info/dependency_links.txt writing requirements to python/libsonata.egg-info/requires.txt writing top-level names to python/libsonata.egg-info/top_level.txt writing manifest file 'python/libsonata.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'extlib/nlohmann/json.hpp' warning: no files found matching '*' under directory 'extlib/fmt/include' warning: no files found matching '*' under directory 'extlib/fmt/src' warning: no files found matching '*' under directory 'extlib/fmt/support/cmake' warning: no files found matching 'extlib/fmt/CMakeLists.txt' warning: no files found matching 'extlib/fmt/*.rst' warning: no files found matching 'extlib/fmt/README.md' warning: no files found matching 'extlib/fmt/ChangeLog.md' warning: no files found matching '*' under directory 'extlib/HighFive/include' warning: no files found matching 'extlib/HighFive/CMakeLists.txt' warning: no files found matching 'extlib/HighFive/LICENSE' warning: no files found matching '*' under directory 'python/pybind11/include' warning: no files found matching '*.cmake' under directory 'python/pybind11/tools' warning: no files found matching 'python/pybind11/CMakeLists.txt' warning: no files found matching 'python/pybind11/LICENSE' adding license file 'COPYING' adding license file 'COPYING.LESSER' adding license file 'AUTHORS.txt' writing manifest file 'python/libsonata.egg-info/SOURCES.txt' Copying python/libsonata.egg-info to build/bdist.linux-x86_64/wheel/./libsonata-0.1.29-py3.13.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/libsonata-0.1.29.dist-info/WHEEL creating '/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir/pip-wheel-awa33hct/.tmp-_n9zlpr7/libsonata-0.1.29-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'libsonata/__init__.py' adding 'libsonata/_libsonata.cpython-313-x86_64-linux-gnu.so' adding 'libsonata-0.1.29.dist-info/AUTHORS.txt' adding 'libsonata-0.1.29.dist-info/COPYING' adding 'libsonata-0.1.29.dist-info/COPYING.LESSER' adding 'libsonata-0.1.29.dist-info/METADATA' adding 'libsonata-0.1.29.dist-info/WHEEL' adding 'libsonata-0.1.29.dist-info/top_level.txt' adding 'libsonata-0.1.29.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for libsonata (pyproject.toml): finished with status 'done' Created wheel for libsonata: filename=libsonata-0.1.29-cp313-cp313-linux_x86_64.whl size=10892362 sha256=e0778c8553a038bc66b683857abfc4957dc773221e5ec1875e8ac036358c57cd Stored in directory: /builddir/.cache/pip/wheels/ca/a0/83/44387416232ce1a57e009216dc56a872696281c1874323f129 Successfully built libsonata + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.yDvJr4 + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.29-build + '[' /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT ++ dirname /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT + mkdir -p /builddir/build/BUILD/libsonata-0.1.29-build + mkdir /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsonata-0.1.29 + DESTDIR=/builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "" -- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/libsonata.so.0.1.29 -- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/libsonata.so.0.1 -- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/libsonata.so -- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/libsonata.a -- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/include/bbp -- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/include/bbp/sonata -- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/include/bbp/sonata/common.h -- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/include/bbp/sonata/config.h -- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/include/bbp/sonata/edges.h -- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/include/bbp/sonata/hdf5_reader.h -- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/include/bbp/sonata/node_sets.h -- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/include/bbp/sonata/nodes.h -- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/include/bbp/sonata/optional.hpp -- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/include/bbp/sonata/population.h -- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/include/bbp/sonata/report_reader.h -- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/include/bbp/sonata/selection.h -- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/include/bbp/sonata/variant.hpp -- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/sonata/CMake/sonata-config.cmake -- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/sonata/CMake/sonata-targets.cmake -- Installing: /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/sonata/CMake/sonata-targets-noconfig.cmake + rm -rf /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT//usr/lib64/libsonata.a ++ ls /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/pyproject-wheeldir/libsonata-0.1.29-cp313-cp313-linux_x86_64.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=libsonata==0.1.29 + '[' -z libsonata==0.1.29 ']' + TMPDIR=/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/pyproject-wheeldir libsonata==0.1.29 Using pip 24.3.1 from /usr/lib/python3.13/site-packages/pip (python 3.13) Looking in links: /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/pyproject-wheeldir Processing ./pyproject-wheeldir/libsonata-0.1.29-cp313-cp313-linux_x86_64.whl Installing collected packages: libsonata Successfully installed libsonata-0.1.29 + '[' -d /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/bin ']' + rm -f /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc42.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/python3.13/site-packages '!=' /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' -d /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/python3.13/site-packages ']' + site_dirs+=("/usr/lib64/python3.13/site-packages") + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT$site_dir/*.dist-info + echo '%ghost /usr/lib64/python3.13/site-packages/libsonata-0.1.29.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.29.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT --record /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.29.dist-info/RECORD --output /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc42.x86_64-pyproject-record + rm -fv /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.29.dist-info/RECORD removed '/builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.29.dist-info/RECORD' + rm -fv /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.29.dist-info/REQUESTED removed '/builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata-0.1.29.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc42.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_FILES_ESCAPE=4.19 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc42.x86_64-pyproject-files --output-modules /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc42.x86_64-pyproject-modules --buildroot /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT --sitelib /usr/lib/python3.13/site-packages --sitearch /usr/lib64/python3.13/site-packages --python-version 3.13 --pyproject-record /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29-1.fc42.x86_64-pyproject-record --prefix /usr -l libsonata + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 0.1.29-1.fc42 --unique-debug-suffix -0.1.29-1.fc42.x86_64 --unique-debug-src-base libsonata-0.1.29-1.fc42.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29 find-debuginfo: starting Extracting debug info from 2 files DWARF-compressing 2 files sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/libsonata-0.1.29-1.fc42.x86_64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/python3.13 using python3.13 Bytecompiling .py files below /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/python3.13/site-packages/libsonata/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents Scanned 36 directories and 63 files, processed 1 inodes, 1 modified (0 replaced + 1 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/libsonata-0.1.29-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Ohapnb + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.29-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' ~/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/tests/data ~/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29 + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsonata-0.1.29 + pushd tests/data + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=4 + /usr/bin/python3 generate.py + popd ~/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29 + /usr/bin/ctest --test-dir redhat-linux-build --output-on-failure --force-new-ctest-process -j4 tests Internal ctest changing into directory: /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/redhat-linux-build Test project /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/redhat-linux-build Start 1: Selection Start 2: SpikeReader Start 3: SomaReportReader limits Start 4: SomaReportReader 1/30 Test #1: Selection ....................................... Passed 0.00 sec Start 5: ElementReportReader limits 2/30 Test #2: SpikeReader ..................................... Passed 0.01 sec 3/30 Test #3: SomaReportReader limits ......................... Passed 0.00 sec Start 6: ElementReportReader Start 7: NodePopulation 4/30 Test #4: SomaReportReader ................................ Passed 0.01 sec 5/30 Test #5: ElementReportReader limits ...................... Passed 0.00 sec Start 8: NodePopulationMove Start 9: NodePopulationSelectAll 6/30 Test #6: ElementReportReader ............................. Passed 0.00 sec Start 10: NodePopulationmatchAttributeValues 7/30 Test #8: NodePopulationMove .............................. Passed 0.00 sec Start 11: NodePopulationmatchAttributeValues - int8_t 8/30 Test #7: NodePopulation .................................. Passed 0.01 sec Start 12: NodePopulationmatchAttributeValues - uint8_t 9/30 Test #9: NodePopulationSelectAll ......................... Passed 0.01 sec Start 13: NodePopulationmatchAttributeValues - int16_t 10/30 Test #10: NodePopulationmatchAttributeValues .............. Passed 0.01 sec Start 14: NodePopulationmatchAttributeValues - uint16_t 11/30 Test #11: NodePopulationmatchAttributeValues - int8_t ..... Passed 0.00 sec Start 15: NodePopulationmatchAttributeValues - int32_t 12/30 Test #12: NodePopulationmatchAttributeValues - uint8_t .... Passed 0.01 sec Start 16: NodePopulationmatchAttributeValues - uint32_t 13/30 Test #13: NodePopulationmatchAttributeValues - int16_t .... Passed 0.01 sec Start 17: NodePopulationmatchAttributeValues - int64_t 14/30 Test #14: NodePopulationmatchAttributeValues - uint16_t ... Passed 0.00 sec Start 18: NodePopulationmatchAttributeValues - uint64_t 15/30 Test #15: NodePopulationmatchAttributeValues - int32_t .... Passed 0.00 sec Start 19: NodeSetParse 16/30 Test #16: NodePopulationmatchAttributeValues - uint32_t ... Passed 0.00 sec Start 20: NodeSetBasic 17/30 Test #17: NodePopulationmatchAttributeValues - int64_t .... Passed 0.01 sec Start 21: NodeSetCompound 18/30 Test #18: NodePopulationmatchAttributeValues - uint64_t ... Passed 0.00 sec Start 22: NodeSet 19/30 Test #19: NodeSetParse .................................... Passed 0.01 sec Start 23: EdgePopulation 20/30 Test #22: NodeSet ......................................... Passed 0.00 sec Start 24: EdgePopulationSelectAll 21/30 Test #20: NodeSetBasic .................................... Passed 0.01 sec Start 25: EdgePopulation::writeIndices 22/30 Test #21: NodeSetCompound ................................. Passed 0.01 sec Start 26: EdgeStorage 23/30 Test #23: EdgePopulation .................................. Passed 0.01 sec Start 27: CircuitConfig 24/30 Test #24: EdgePopulationSelectAll ......................... Passed 0.00 sec Start 28: SimulationConfig 25/30 Test #25: EdgePopulation::writeIndices .................... Passed 0.01 sec 26/30 Test #26: EdgeStorage ..................................... Passed 0.00 sec Start 29: SONATA Start 30: unittests 27/30 Test #27: CircuitConfig ................................... Passed 0.01 sec 28/30 Test #29: SONATA .......................................... Passed 0.00 sec 29/30 Test #28: SimulationConfig ................................ Passed 0.01 sec 30/30 Test #30: unittests ....................................... Passed 0.02 sec 100% tests passed, 0 tests failed out of 30 Total Test time (real) = 0.06 sec + mkdir _empty + cp -rp python/tests _empty/ + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=4 + /usr/bin/pytest -v _empty/tests ============================= test session starts ============================== platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29 configfile: pyproject.toml collecting ... collected 80 items _empty/tests/test_config.py::TestCircuitConfig::test_astrocyte_properties PASSED [ 1%] _empty/tests/test_config.py::TestCircuitConfig::test_basic PASSED [ 2%] _empty/tests/test_config.py::TestCircuitConfig::test_biophysical_properties_raises PASSED [ 3%] _empty/tests/test_config.py::TestCircuitConfig::test_duplicate_population PASSED [ 5%] _empty/tests/test_config.py::TestCircuitConfig::test_endfeet_properties PASSED [ 6%] _empty/tests/test_config.py::TestCircuitConfig::test_expanded_json PASSED [ 7%] _empty/tests/test_config.py::TestCircuitConfig::test_get_population_properties PASSED [ 8%] _empty/tests/test_config.py::TestCircuitConfig::test_partial PASSED [ 10%] _empty/tests/test_config.py::TestCircuitConfig::test_shadowing_morphs PASSED [ 11%] _empty/tests/test_config.py::TestCircuitConfig::test_spatial_directories PASSED [ 12%] _empty/tests/test_config.py::TestCircuitConfig::test_vasculature_properties PASSED [ 13%] _empty/tests/test_config.py::TestSimulationConfig::test_basic PASSED [ 15%] _empty/tests/test_config.py::TestSimulationConfig::test_empty_conditions PASSED [ 16%] _empty/tests/test_config.py::TestSimulationConfig::test_empty_connection_overrides PASSED [ 17%] _empty/tests/test_config.py::TestSimulationConfig::test_expanded_json PASSED [ 18%] _empty/tests/test_config.py::TestSimulationConfig::test_run PASSED [ 20%] _empty/tests/test_config.py::TestSimulationConfig::test_simulation_config_failures PASSED [ 21%] _empty/tests/test_nodesets.py::TestNodeSetFailure::test_BasicScalarFailFloat PASSED [ 22%] _empty/tests/test_nodesets.py::TestNodeSetFailure::test_BasicScalarFailNegativeNodeIds PASSED [ 23%] _empty/tests/test_nodesets.py::TestNodeSetFailure::test_BasicScalarFailPopulation PASSED [ 25%] _empty/tests/test_nodesets.py::TestNodeSetFailure::test_CorrectStructure PASSED [ 26%] _empty/tests/test_nodesets.py::TestNodeSetFailure::test_FailCompoundWithInt PASSED [ 27%] _empty/tests/test_nodesets.py::TestNodeSetFailure::test_FaileRecursiveCompound PASSED [ 28%] _empty/tests/test_nodesets.py::TestNodeSetFailure::test_MissingBasic PASSED [ 30%] _empty/tests/test_nodesets.py::TestNodeSetFailure::test_MissingFile PASSED [ 31%] _empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_BasicScalarAnded PASSED [ 32%] _empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_BasicScalarEnum PASSED [ 33%] _empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_BasicScalarInt PASSED [ 35%] _empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_BasicScalarNodeId PASSED [ 36%] _empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_BasicScalarPopulation PASSED [ 37%] _empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_BasicScalarString PASSED [ 38%] _empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_NodeSetCompound PASSED [ 40%] _empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_NodeSetEmptyArray PASSED [ 41%] _empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_NodeSet_toJSON PASSED [ 42%] _empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_extend PASSED [ 43%] _empty/tests/test_nodesets.py::TestNodePopulationNodeSet::test_library_datatype PASSED [ 45%] _empty/tests/test_population.py::TestSelection::test_basic PASSED [ 46%] _empty/tests/test_population.py::TestSelection::test_comparison PASSED [ 47%] _empty/tests/test_population.py::TestSelection::test_dtypes PASSED [ 48%] _empty/tests/test_population.py::TestSelection::test_from_ranges PASSED [ 50%] _empty/tests/test_population.py::TestSelection::test_from_values PASSED [ 51%] _empty/tests/test_population.py::TestSelection::test_from_values_empty PASSED [ 52%] _empty/tests/test_population.py::TestSelection::test_union_intersection PASSED [ 53%] _empty/tests/test_population.py::TestNodePopulation::test_attribute_names PASSED [ 55%] _empty/tests/test_population.py::TestNodePopulation::test_enumeration_names PASSED [ 56%] _empty/tests/test_population.py::TestNodePopulation::test_enumeration_values PASSED [ 57%] _empty/tests/test_population.py::TestNodePopulation::test_get_attribute PASSED [ 58%] _empty/tests/test_population.py::TestNodePopulation::test_get_dynamics_attribute PASSED [ 60%] _empty/tests/test_population.py::TestNodePopulation::test_match_values PASSED [ 61%] _empty/tests/test_population.py::TestNodePopulation::test_name PASSED [ 62%] _empty/tests/test_population.py::TestNodePopulation::test_select_all PASSED [ 63%] _empty/tests/test_population.py::TestNodePopulation::test_size PASSED [ 65%] _empty/tests/test_population.py::TestEdgePopulation::test_afferent_edges PASSED [ 66%] _empty/tests/test_population.py::TestEdgePopulation::test_connecting_edges PASSED [ 67%] _empty/tests/test_population.py::TestEdgePopulation::test_efferent_edges PASSED [ 68%] _empty/tests/test_population.py::TestEdgePopulation::test_library_enumeration PASSED [ 70%] _empty/tests/test_population.py::TestEdgePopulation::test_select_all PASSED [ 71%] _empty/tests/test_population.py::TestEdgePopulation::test_source PASSED [ 72%] _empty/tests/test_population.py::TestEdgePopulation::test_source_nodes PASSED [ 73%] _empty/tests/test_population.py::TestEdgePopulation::test_target PASSED [ 75%] _empty/tests/test_population.py::TestEdgePopulation::test_target_nodes PASSED [ 76%] _empty/tests/test_population.py::TestMisc::test_path_ctor PASSED [ 77%] _empty/tests/test_reports.py::TestSpikeReader::test_getTimes_from_population PASSED [ 78%] _empty/tests/test_reports.py::TestSpikeReader::test_get_all_populations PASSED [ 80%] _empty/tests/test_reports.py::TestSpikeReader::test_get_inexistant_population PASSED [ 81%] _empty/tests/test_reports.py::TestSpikeReader::test_get_population PASSED [ 82%] _empty/tests/test_reports.py::TestSpikeReader::test_get_spikes_from_population PASSED [ 83%] _empty/tests/test_reports.py::TestSomaReportReader::test_block_gap_limit PASSED [ 85%] _empty/tests/test_reports.py::TestSomaReportReader::test_get_all_population PASSED [ 86%] _empty/tests/test_reports.py::TestSomaReportReader::test_get_inexistant_population PASSED [ 87%] _empty/tests/test_reports.py::TestSomaReportReader::test_get_node_id_element_id_mapping PASSED [ 88%] _empty/tests/test_reports.py::TestSomaReportReader::test_get_population PASSED [ 90%] _empty/tests/test_reports.py::TestSomaReportReader::test_get_reports_from_population PASSED [ 91%] _empty/tests/test_reports.py::TestElementReportReader::test_block_gap_limit PASSED [ 92%] _empty/tests/test_reports.py::TestElementReportReader::test_get_all_population PASSED [ 93%] _empty/tests/test_reports.py::TestElementReportReader::test_get_inexistant_population PASSED [ 95%] _empty/tests/test_reports.py::TestElementReportReader::test_get_node_id_element_id_mapping PASSED [ 96%] _empty/tests/test_reports.py::TestElementReportReader::test_get_node_ids PASSED [ 97%] _empty/tests/test_reports.py::TestElementReportReader::test_get_population PASSED [ 98%] _empty/tests/test_reports.py::TestElementReportReader::test_get_reports_from_population PASSED [100%] ============================== 80 passed in 0.15s ============================== + RPM_EC=0 ++ jobs -p + exit 0 Processing files: libsonata-0.1.29-1.fc42.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.Z3cEMO + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.29-build + cd libsonata-0.1.29 + DOCDIR=/builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/doc/libsonata + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/doc/libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/README.rst /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/doc/libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/CHANGELOG.md /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/doc/libsonata + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.T2Xg3K + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.29-build + cd libsonata-0.1.29 + LICENSEDIR=/builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/licenses/libsonata + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/licenses/libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/COPYING.LESSER /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/licenses/libsonata + RPM_EC=0 ++ jobs -p + exit 0 Provides: libsonata = 0.1.29-1.fc42 libsonata(x86-64) = 0.1.29-1.fc42 libsonata.so.0.1()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.310()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: libsonata-devel-0.1.29-1.fc42.x86_64 Provides: libsonata-devel = 0.1.29-1.fc42 libsonata-devel(x86-64) = 0.1.29-1.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libsonata.so.0.1()(64bit) Processing files: python3-libsonata-0.1.29-1.fc42.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.fLcqd2 + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.29-build + cd libsonata-0.1.29 + DOCDIR=/builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/doc/python3-libsonata + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/doc/python3-libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/README.rst /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/doc/python3-libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.29-build/libsonata-0.1.29/CHANGELOG.md /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT/usr/share/doc/python3-libsonata + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-libsonata = 0.1.29-1.fc42 python3-libsonata = 0.1.29-1.fc42 python3-libsonata(x86-64) = 0.1.29-1.fc42 python3.13-libsonata = 0.1.29-1.fc42 python3.13dist(libsonata) = 0.1.29 python3dist(libsonata) = 0.1.29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libhdf5.so.310()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.13 python3.13dist(numpy) >= 1.17.3 rtld(GNU_HASH) Processing files: libsonata-debugsource-0.1.29-1.fc42.x86_64 Provides: libsonata-debugsource = 0.1.29-1.fc42 libsonata-debugsource(x86-64) = 0.1.29-1.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: libsonata-debuginfo-0.1.29-1.fc42.x86_64 Provides: debuginfo(build-id) = 9e4dfa521dd06152af5beb4b8a322a03ec0a7c33 libsonata-debuginfo = 0.1.29-1.fc42 libsonata-debuginfo(x86-64) = 0.1.29-1.fc42 libsonata.so.0.1.29-0.1.29-1.fc42.x86_64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsonata-debugsource(x86-64) = 0.1.29-1.fc42 Processing files: python3-libsonata-debuginfo-0.1.29-1.fc42.x86_64 Provides: debuginfo(build-id) = 41b854d6919d0a5587f2b4ec3c144fbff92c58b2 python-libsonata-debuginfo = 0.1.29-1.fc42 python3-libsonata-debuginfo = 0.1.29-1.fc42 python3-libsonata-debuginfo(x86-64) = 0.1.29-1.fc42 python3.13-libsonata-debuginfo = 0.1.29-1.fc42 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsonata-debugsource(x86-64) = 0.1.29-1.fc42 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/libsonata-0.1.29-build/BUILDROOT Wrote: /builddir/build/SRPMS/libsonata-0.1.29-1.fc42.src.rpm Wrote: /builddir/build/RPMS/libsonata-0.1.29-1.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/libsonata-debugsource-0.1.29-1.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/python3-libsonata-0.1.29-1.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/libsonata-devel-0.1.29-1.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/libsonata-debuginfo-0.1.29-1.fc42.x86_64.rpm Wrote: /builddir/build/RPMS/python3-libsonata-debuginfo-0.1.29-1.fc42.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.0gSXQi + umask 022 + cd /builddir/build/BUILD/libsonata-0.1.29-build + test -d /builddir/build/BUILD/libsonata-0.1.29-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/libsonata-0.1.29-build + rm -rf /builddir/build/BUILD/libsonata-0.1.29-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild libsonata-0.1.29-1.fc42.src.rpm Finish: build phase for libsonata-0.1.29-1.fc42.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-x86_64-1738675768.824783/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/libsonata-0.1.29-1.fc42.src.rpm) Config(child) 3 minutes 30 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "python3-libsonata-debuginfo", "epoch": null, "version": "0.1.29", "release": "1.fc42", "arch": "x86_64" }, { "name": "libsonata-debugsource", "epoch": null, "version": "0.1.29", "release": "1.fc42", "arch": "x86_64" }, { "name": "libsonata-devel", "epoch": null, "version": "0.1.29", "release": "1.fc42", "arch": "x86_64" }, { "name": "python3-libsonata", "epoch": null, "version": "0.1.29", "release": "1.fc42", "arch": "x86_64" }, { "name": "libsonata", "epoch": null, "version": "0.1.29", "release": "1.fc42", "arch": "x86_64" }, { "name": "libsonata-debuginfo", "epoch": null, "version": "0.1.29", "release": "1.fc42", "arch": "x86_64" }, { "name": "libsonata", "epoch": null, "version": "0.1.29", "release": "1.fc42", "arch": "src" } ] } RPMResults finished