Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c197' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8709145-fedora-41-x86_64 --chroot fedora-41-x86_64 Version: 1.2 PID: 8531 Logging PID: 8532 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 8709145, 'buildroot_pkgs': [], 'chroot': 'fedora-41-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'df0b9f1495ea84a05fa7bc46fe8cf4dadd373eab', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-Rhtslib', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-Rhtslib', 'package_version': '2.4.1-4', 'project_dirname': 'openblas-0.3.23', 'project_name': 'openblas-0.3.23', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/openblas-0.3.23/fedora-41-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/openblas-0.3.23--https://src.fedoraproject.org/user/iucar', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': None, 'submitter': 'https://src.fedoraproject.org/user/iucar', 'tags': [], 'task_id': '8709145-fedora-41-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-Rhtslib /var/lib/copr-rpmbuild/workspace/workdir-ib612x1w/R-Rhtslib --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/openblas-0.3.23/R-Rhtslib', '/var/lib/copr-rpmbuild/workspace/workdir-ib612x1w/R-Rhtslib', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-ib612x1w/R-Rhtslib'... Running: git checkout df0b9f1495ea84a05fa7bc46fe8cf4dadd373eab -- cmd: ['git', 'checkout', 'df0b9f1495ea84a05fa7bc46fe8cf4dadd373eab', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-ib612x1w/R-Rhtslib rc: 0 stdout: stderr: Note: switching to 'df0b9f1495ea84a05fa7bc46fe8cf4dadd373eab'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at df0b9f1 automatic import of R-Rhtslib Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-ib612x1w/R-Rhtslib rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading Rhtslib_2.4.1.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o Rhtslib_2.4.1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/openblas-0.3.23/R-Rhtslib/Rhtslib_2.4.1.tar.gz/md5/b7d295a694e865f4f4060c94c4bca446/Rhtslib_2.4.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 4474k 100 4474k 0 0 38.8M 0 --:--:-- --:--:-- --:--:-- 39.0M INFO: Reading stdout from command: md5sum Rhtslib_2.4.1.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-ib612x1w/R-Rhtslib/R-Rhtslib.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-ib612x1w/R-Rhtslib --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1740738340.675980 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.0 starting (python version = 3.13.0, NVR = mock-6.0-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-ib612x1w/R-Rhtslib/R-Rhtslib.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-ib612x1w/R-Rhtslib --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1740738340.675980 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-ib612x1w/R-Rhtslib/R-Rhtslib.spec) Config(fedora-41-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.0 INFO: Mock Version: 6.0 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1740738340.675980/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:41 INFO: Pulling image: registry.fedoraproject.org/fedora:41 INFO: Tagging container image as mock-bootstrap-eaa9da8a-5405-4fb6-8c0d-6db1f7f96c12 INFO: Checking that ce6cc85ef66c787b3e4ce37c54bbdee85361017fe6f6dca1b549c043fa8283e1 image matches host's architecture INFO: Copy content of container ce6cc85ef66c787b3e4ce37c54bbdee85361017fe6f6dca1b549c043fa8283e1 to /var/lib/mock/fedora-41-x86_64-bootstrap-1740738340.675980/root INFO: mounting ce6cc85ef66c787b3e4ce37c54bbdee85361017fe6f6dca1b549c043fa8283e1 with podman image mount INFO: image ce6cc85ef66c787b3e4ce37c54bbdee85361017fe6f6dca1b549c043fa8283e1 as /var/lib/containers/storage/overlay/dad2e29479cf5444e4d3a11c97a74834487b4816ea80a1403a976cd9e7213324/merged INFO: umounting image ce6cc85ef66c787b3e4ce37c54bbdee85361017fe6f6dca1b549c043fa8283e1 (/var/lib/containers/storage/overlay/dad2e29479cf5444e4d3a11c97a74834487b4816ea80a1403a976cd9e7213324/merged) with podman image umount INFO: Removing image mock-bootstrap-eaa9da8a-5405-4fb6-8c0d-6db1f7f96c12 INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1740738340.675980/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc41.x86_64 rpm-sequoia-1.7.0-5.fc41.x86_64 dnf5-5.2.10.0-2.fc41.x86_64 dnf5-plugins-5.2.10.0-2.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: updates 100% | 15.1 MiB/s | 11.2 MiB | 00m01s fedora 100% | 15.2 MiB/s | 35.4 MiB | 00m02s Copr repository 100% | 19.4 MiB/s | 3.3 MiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 43.8 MiB/s | 14.3 MiB | 00m00s Repositories loaded. 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4.2.1-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 831.9 KiB ncurses-base noarch 6.5-5.20250125.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 326.8 KiB ncurses-libs x86_64 6.5-5.20250125.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 946.3 KiB ocaml-srpm-macros noarch 10-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB openblas-srpm-macros noarch 2-19.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 112.0 B openldap x86_64 2.6.9-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 655.1 KiB openssl-libs x86_64 1:3.2.4-2.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.8 MiB p11-kit x86_64 0.25.5-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 MiB p11-kit-trust x86_64 0.25.5-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 395.5 KiB package-notes-srpm-macros noarch 0.5-13.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 KiB pam-libs x86_64 1.7.0-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 126.7 KiB pcre2 x86_64 10.45-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 697.7 KiB pcre2-syntax noarch 10.45-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 273.9 KiB perl-srpm-macros noarch 1-57.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0 B pkgconf x86_64 2.3.0-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88.5 KiB pkgconf-m4 noarch 2.3.0-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 989.0 B popt x86_64 1.19-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 132.8 KiB publicsuffix-list-dafsa noarch 20250116-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 68.5 KiB pyproject-srpm-macros noarch 1.17.0-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 KiB python-srpm-macros noarch 3.13-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 500.0 B qt6-srpm-macros noarch 6.8.2-2.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 464.0 B readline x86_64 8.2-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 485.0 KiB rpm x86_64 4.20.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.1 MiB rpm-build-libs x86_64 4.20.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 206.6 KiB rpm-libs x86_64 4.20.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 721.8 KiB rpm-sequoia x86_64 1.7.0-5.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.4 MiB rust-srpm-macros noarch 26.3-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.8 KiB setup noarch 2.15.0-12.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.8 KiB sqlite-libs x86_64 3.49.0-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB systemd-libs x86_64 257.3-7.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 MiB systemd-standalone-sysusers x86_64 257.3-7.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 277.3 KiB tree-sitter-srpm-macros noarch 0.1.0-8.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.5 KiB util-linux-core x86_64 2.40.4-7.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB xxhash-libs x86_64 0.8.3-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 90.2 KiB xz-libs x86_64 1:5.6.3-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 218.3 KiB zig-srpm-macros noarch 1-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip x86_64 3.0-43.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 698.5 KiB zlib-ng-compat x86_64 2.2.4-2.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 137.6 KiB zstd x86_64 1.5.7-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 148 packages Total size of inbound packages is 52 MiB. Need to download 52 MiB. After this operation, 176 MiB extra will be used (install 176 MiB, remove 0 B). [ 1/148] bzip2-0:1.0.8-20.fc42.x86_64 100% | 685.1 KiB/s | 52.1 KiB | 00m00s [ 2/148] bash-0:5.2.37-3.fc43.x86_64 100% | 15.9 MiB/s | 1.8 MiB | 00m00s [ 3/148] coreutils-0:9.6-2.fc43.x86_64 100% | 9.8 MiB/s | 1.1 MiB | 00m00s [ 4/148] cpio-0:2.15-2.fc41.x86_64 100% | 7.1 MiB/s | 285.2 KiB | 00m00s [ 5/148] diffutils-0:3.10-9.fc42.x86_6 100% | 18.4 MiB/s | 396.4 KiB | 00m00s [ 6/148] fedora-release-common-0:43-0. 100% | 1.3 MiB/s | 25.8 KiB | 00m00s [ 7/148] glibc-minimal-langpack-0:2.41 100% | 5.4 MiB/s | 127.0 KiB | 00m00s [ 8/148] findutils-1:4.10.0-5.fc42.x86 100% | 11.8 MiB/s | 542.7 KiB | 00m00s [ 9/148] gawk-0:5.3.1-1.fc42.x86_64 100% | 33.3 MiB/s | 1.1 MiB | 00m00s [ 10/148] gzip-0:1.13-3.fc42.x86_64 100% | 8.0 MiB/s | 164.2 KiB | 00m00s [ 11/148] grep-0:3.11-10.fc42.x86_64 100% | 12.9 MiB/s | 290.1 KiB | 00m00s [ 12/148] info-0:7.2-3.fc42.x86_64 100% | 9.0 MiB/s | 183.8 KiB | 00m00s [ 13/148] redhat-rpm-config-0:342-2.fc4 100% | 4.1 MiB/s | 74.9 KiB | 00m00s [ 14/148] patch-0:2.7.6-26.fc42.x86_64 100% | 6.6 MiB/s | 128.4 KiB | 00m00s [ 15/148] rpm-build-0:4.20.1-1.fc43.x86 100% | 4.0 MiB/s | 74.3 KiB | 00m00s [ 16/148] sed-0:4.9-4.fc42.x86_64 100% | 13.1 MiB/s | 308.8 KiB | 00m00s [ 17/148] shadow-utils-2:4.17.0-4.fc42. 100% | 29.1 MiB/s | 1.3 MiB | 00m00s [ 18/148] tar-2:1.35-5.fc42.x86_64 100% | 19.9 MiB/s | 853.9 KiB | 00m00s [ 19/148] unzip-0:6.0-66.fc42.x86_64 100% | 7.5 MiB/s | 184.6 KiB | 00m00s [ 20/148] which-0:2.23-1.fc42.x86_64 100% | 1.9 MiB/s | 41.7 KiB | 00m00s [ 21/148] xz-1:5.6.3-3.fc42.x86_64 100% | 18.0 MiB/s | 461.3 KiB | 00m00s [ 22/148] util-linux-0:2.40.4-7.fc43.x8 100% | 34.7 MiB/s | 1.1 MiB | 00m00s [ 23/148] fedora-repos-0:43-0.1.noarch 100% | 441.5 KiB/s | 9.3 KiB | 00m00s [ 24/148] coreutils-common-0:9.6-2.fc43 100% | 42.0 MiB/s | 2.1 MiB | 00m00s [ 25/148] filesystem-0:3.18-38.fc43.x86 100% | 24.8 MiB/s | 1.3 MiB | 00m00s [ 26/148] glibc-common-0:2.41.9000-1.fc 100% | 17.4 MiB/s | 409.5 KiB | 00m00s [ 27/148] filesystem-srpm-macros-0:3.18 100% | 1.6 MiB/s | 25.5 KiB | 00m00s [ 28/148] rpm-0:4.20.1-1.fc43.x86_64 100% | 21.0 MiB/s | 515.6 KiB | 00m00s [ 29/148] libblkid-0:2.40.4-7.fc43.x86_ 100% | 5.2 MiB/s | 122.5 KiB | 00m00s [ 30/148] glibc-0:2.41.9000-1.fc43.x86_ 100% | 25.3 MiB/s | 2.3 MiB | 00m00s [ 31/148] libmount-0:2.40.4-7.fc43.x86_ 100% | 6.9 MiB/s | 155.0 KiB | 00m00s [ 32/148] libfdisk-0:2.40.4-7.fc43.x86_ 100% | 6.7 MiB/s | 158.2 KiB | 00m00s [ 33/148] libsmartcols-0:2.40.4-7.fc43. 100% | 4.7 MiB/s | 81.2 KiB | 00m00s [ 34/148] libuuid-0:2.40.4-7.fc43.x86_6 100% | 1.4 MiB/s | 25.3 KiB | 00m00s [ 35/148] util-linux-core-0:2.40.4-7.fc 100% | 17.9 MiB/s | 513.8 KiB | 00m00s [ 36/148] xz-libs-1:5.6.3-3.fc42.x86_64 100% | 5.8 MiB/s | 113.4 KiB | 00m00s [ 37/148] fedora-gpg-keys-0:43-0.1.noar 100% | 6.4 MiB/s | 125.2 KiB | 00m00s [ 38/148] fedora-repos-rawhide-0:43-0.1 100% | 465.5 KiB/s | 8.8 KiB | 00m00s [ 39/148] rpm-libs-0:4.20.1-1.fc43.x86_ 100% | 9.5 MiB/s | 312.2 KiB | 00m00s [ 40/148] rpm-build-libs-0:4.20.1-1.fc4 100% | 3.6 MiB/s | 99.7 KiB | 00m00s [ 41/148] glibc-gconv-extra-0:2.41.9000 100% | 29.7 MiB/s | 1.6 MiB | 00m00s [ 42/148] libxcrypt-0:4.4.38-6.fc43.x86 100% | 3.0 MiB/s | 127.3 KiB | 00m00s [ 43/148] libselinux-0:3.8-1.fc42.x86_6 100% | 4.0 MiB/s | 97.1 KiB | 00m00s [ 44/148] systemd-libs-0:257.3-7.fc43.x 100% | 16.3 MiB/s | 819.8 KiB | 00m00s [ 45/148] libsepol-0:3.8-1.fc42.x86_64 100% | 12.2 MiB/s | 348.9 KiB | 00m00s [ 46/148] ncurses-libs-0:6.5-5.20250125 100% | 10.6 MiB/s | 335.0 KiB | 00m00s [ 47/148] ncurses-base-0:6.5-5.20250125 100% | 2.1 MiB/s | 63.5 KiB | 00m00s [ 48/148] audit-libs-0:4.0.3-2.fc42.x86 100% | 5.1 MiB/s | 125.3 KiB | 00m00s [ 49/148] pam-libs-0:1.7.0-4.fc42.x86_6 100% | 3.0 MiB/s | 58.3 KiB | 00m00s [ 50/148] libeconf-0:0.7.6-1.fc43.x86_6 100% | 1.7 MiB/s | 35.2 KiB | 00m00s [ 51/148] zlib-ng-compat-0:2.2.4-2.fc43 100% | 3.9 MiB/s | 79.1 KiB | 00m00s [ 52/148] libcap-ng-0:0.8.5-4.fc42.x86_ 100% | 1.7 MiB/s | 32.2 KiB | 00m00s [ 53/148] readline-0:8.2-12.fc42.x86_64 100% | 9.6 MiB/s | 215.2 KiB | 00m00s [ 54/148] bzip2-libs-0:1.0.8-20.fc42.x8 100% | 2.2 MiB/s | 43.6 KiB | 00m00s [ 55/148] libacl-0:2.3.2-3.fc42.x86_64 100% | 1.1 MiB/s | 23.0 KiB | 00m00s [ 56/148] libgcc-0:15.0.1-0.8.fc43.x86_ 100% | 5.0 MiB/s | 116.9 KiB | 00m00s [ 57/148] libcap-0:2.73-2.fc42.x86_64 100% | 3.7 MiB/s | 84.3 KiB | 00m00s [ 58/148] setup-0:2.15.0-12.fc43.noarch 100% | 7.3 MiB/s | 149.4 KiB | 00m00s [ 59/148] libsemanage-0:3.8-1.fc42.x86_ 100% | 5.0 MiB/s | 123.6 KiB | 00m00s [ 60/148] libzstd-0:1.5.7-1.fc43.x86_64 100% | 8.5 MiB/s | 314.8 KiB | 00m00s [ 61/148] rpm-sequoia-0:1.7.0-5.fc43.x8 100% | 22.8 MiB/s | 911.1 KiB | 00m00s [ 62/148] sqlite-libs-0:3.49.0-1.fc43.x 100% | 24.1 MiB/s | 766.3 KiB | 00m00s [ 63/148] lua-libs-0:5.4.7-2.fc42.x86_6 100% | 5.6 MiB/s | 133.0 KiB | 00m00s [ 64/148] popt-0:1.19-8.fc42.x86_64 100% | 2.8 MiB/s | 59.4 KiB | 00m00s [ 65/148] elfutils-libelf-0:0.192-9.fc4 100% | 491.1 KiB/s | 207.3 KiB | 00m00s [ 66/148] elfutils-libs-0:0.192-9.fc41. 100% | 600.6 KiB/s | 261.8 KiB | 00m00s [ 67/148] libgomp-0:15.0.1-0.8.fc43.x86 100% | 10.0 MiB/s | 349.0 KiB | 00m00s [ 68/148] elfutils-debuginfod-client-0: 100% | 608.6 KiB/s | 46.3 KiB | 00m00s [ 69/148] file-libs-0:5.46-1.fc42.x86_6 100% | 24.4 MiB/s | 849.4 KiB | 00m00s [ 70/148] file-0:5.46-1.fc42.x86_64 100% | 2.3 MiB/s | 48.7 KiB | 00m00s [ 71/148] elfutils-0:0.192-9.fc41.x86_6 100% | 1.0 MiB/s | 546.1 KiB | 00m01s [ 72/148] alternatives-0:1.31-3.fc42.x8 100% | 2.1 MiB/s | 40.9 KiB | 00m00s [ 73/148] jansson-0:2.14-2.fc42.x86_64 100% | 2.3 MiB/s | 45.7 KiB | 00m00s [ 74/148] debugedit-0:5.1-5.fc43.x86_64 100% | 3.5 MiB/s | 78.6 KiB | 00m00s [ 75/148] libarchive-0:3.7.7-3.fc43.x86 100% | 10.0 MiB/s | 411.6 KiB | 00m00s [ 76/148] zstd-0:1.5.7-1.fc43.x86_64 100% | 12.8 MiB/s | 485.8 KiB | 00m00s [ 77/148] pkgconf-pkg-config-0:2.3.0-2. 100% | 472.6 KiB/s | 9.9 KiB | 00m00s [ 78/148] pkgconf-m4-0:2.3.0-2.fc42.noa 100% | 749.2 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100% | 1.0 MiB/s | 20.3 KiB | 00m00s [ 92/148] dwz-0:0.15-9.fc42.x86_64 100% | 6.6 MiB/s | 135.7 KiB | 00m00s [ 93/148] fonts-srpm-macros-1:2.0.5-21. 100% | 1.2 MiB/s | 27.1 KiB | 00m00s [ 94/148] fpc-srpm-macros-0:1.3-14.fc42 100% | 401.0 KiB/s | 8.0 KiB | 00m00s [ 95/148] ghc-srpm-macros-0:1.9.2-2.fc4 100% | 457.8 KiB/s | 9.2 KiB | 00m00s [ 96/148] gnat-srpm-macros-0:6-7.fc42.n 100% | 478.4 KiB/s | 8.6 KiB | 00m00s [ 97/148] kernel-srpm-macros-0:1.0-25.f 100% | 519.5 KiB/s | 9.9 KiB | 00m00s [ 98/148] lua-srpm-macros-0:1-15.fc42.n 100% | 495.4 KiB/s | 8.9 KiB | 00m00s [ 99/148] ocaml-srpm-macros-0:10-4.fc42 100% | 484.5 KiB/s | 9.2 KiB | 00m00s [100/148] openblas-srpm-macros-0:2-19.f 100% | 369.8 KiB/s | 7.8 KiB | 00m00s [101/148] package-notes-srpm-macros-0:0 100% | 514.4 KiB/s | 9.3 KiB | 00m00s [102/148] perl-srpm-macros-0:1-57.fc42. 100% | 447.7 KiB/s | 8.5 KiB | 00m00s [103/148] python-srpm-macros-0:3.13-4.f 100% | 1.3 MiB/s | 23.0 KiB | 00m00s [104/148] qt5-srpm-macros-0:5.15.15-1.f 100% | 494.4 KiB/s | 8.9 KiB | 00m00s [105/148] rust-srpm-macros-0:26.3-4.fc4 100% | 508.9 KiB/s | 11.7 KiB | 00m00s [106/148] zig-srpm-macros-0:1-4.fc42.no 100% | 458.0 KiB/s | 8.2 KiB | 00m00s [107/148] zip-0:3.0-43.fc42.x86_64 100% | 9.5 MiB/s | 263.5 KiB | 00m00s [108/148] ed-0:1.21-2.fc42.x86_64 100% | 4.4 MiB/s | 82.0 KiB | 00m00s [109/148] libattr-0:2.5.2-5.fc42.x86_64 100% | 949.1 KiB/s | 17.1 KiB | 00m00s [110/148] pcre2-0:10.45-1.fc43.x86_64 100% | 10.7 MiB/s | 262.8 KiB | 00m00s [111/148] pcre2-syntax-0:10.45-1.fc43.n 100% | 7.2 MiB/s | 161.7 KiB | 00m00s [112/148] lz4-libs-0:1.10.0-2.fc42.x86_ 100% | 3.6 MiB/s | 78.1 KiB | 00m00s [113/148] libxml2-0:2.12.9-2.fc42.x86_6 100% | 12.8 MiB/s | 696.0 KiB | 00m00s [114/148] mpfr-0:4.2.1-6.fc42.x86_64 100% | 11.3 MiB/s | 348.5 KiB | 00m00s [115/148] openssl-libs-1:3.2.4-2.fc43.x 100% | 33.0 MiB/s | 2.3 MiB | 00m00s [116/148] libstdc++-0:15.0.1-0.8.fc43.x 100% | 17.3 MiB/s | 886.0 KiB | 00m00s [117/148] json-c-0:0.18-2.fc42.x86_64 100% | 2.3 MiB/s | 44.9 KiB | 00m00s [118/148] crypto-policies-0:20250214-1. 100% | 3.6 MiB/s | 74.0 KiB | 00m00s [119/148] elfutils-default-yama-scope-0 100% | 179.2 KiB/s | 12.4 KiB | 00m00s [120/148] libffi-0:3.4.6-5.fc42.x86_64 100% | 1.7 MiB/s | 39.9 KiB | 00m00s [121/148] ca-certificates-0:2024.2.69_v 100% | 22.5 MiB/s | 945.0 KiB | 00m00s [122/148] p11-kit-trust-0:0.25.5-5.fc42 100% | 6.5 MiB/s | 132.6 KiB | 00m00s [123/148] p11-kit-0:0.25.5-5.fc42.x86_6 100% | 15.6 MiB/s | 478.0 KiB | 00m00s [124/148] libtasn1-0:4.20.0-1.fc43.x86_ 100% | 3.1 MiB/s | 75.0 KiB | 00m00s [125/148] fedora-release-0:43-0.5.noarc 100% | 826.2 KiB/s | 14.9 KiB | 00m00s [126/148] systemd-standalone-sysusers-0 100% | 7.3 MiB/s | 157.4 KiB | 00m00s [127/148] gmp-1:6.3.0-3.fc43.x86_64 100% | 13.1 MiB/s | 322.2 KiB | 00m00s [128/148] fedora-release-identity-basic 100% | 922.4 KiB/s | 15.7 KiB | 00m00s [129/148] libnghttp2-0:1.64.0-3.fc42.x8 100% | 3.8 MiB/s | 77.7 KiB | 00m00s [130/148] libcurl-0:8.12.1-1.fc43.x86_6 100% | 14.9 MiB/s | 381.0 KiB | 00m00s [131/148] libssh-0:0.11.1-4.fc42.x86_64 100% | 11.4 MiB/s | 233.3 KiB | 00m00s [132/148] libssh-config-0:0.11.1-4.fc42 100% | 500.2 KiB/s | 9.0 KiB | 00m00s [133/148] xxhash-libs-0:0.8.3-2.fc42.x8 100% | 2.1 MiB/s | 39.1 KiB | 00m00s [134/148] krb5-libs-0:1.21.3-5.fc42.x86 100% | 21.8 MiB/s | 760.6 KiB | 00m00s [135/148] openldap-0:2.6.9-3.fc42.x86_6 100% | 11.5 MiB/s | 260.2 KiB | 00m00s [136/148] libbrotli-0:1.1.0-6.fc42.x86_ 100% | 14.4 MiB/s | 339.8 KiB | 00m00s [137/148] libidn2-0:2.3.7-3.fc42.x86_64 100% | 5.2 MiB/s | 112.2 KiB | 00m00s [138/148] libpsl-0:0.21.5-5.fc42.x86_64 100% | 3.5 MiB/s | 64.0 KiB | 00m00s [139/148] keyutils-libs-0:1.6.3-5.fc42. 100% | 1.8 MiB/s | 31.5 KiB | 00m00s [140/148] libcom_err-0:1.47.2-3.fc42.x8 100% | 1.5 MiB/s | 26.9 KiB | 00m00s [141/148] libverto-0:0.3.2-10.fc42.x86_ 100% | 1.1 MiB/s | 20.8 KiB | 00m00s [142/148] libevent-0:2.1.12-15.fc42.x86 100% | 11.5 MiB/s | 260.2 KiB | 00m00s [143/148] cyrus-sasl-lib-0:2.1.28-30.fc 100% | 25.0 MiB/s | 793.5 KiB | 00m00s [144/148] gdb-minimal-0:16.2-2.fc43.x86 100% | 20.8 MiB/s | 4.4 MiB | 00m00s [145/148] libtool-ltdl-0:2.5.4-4.fc42.x 100% | 1.8 MiB/s | 36.2 KiB | 00m00s [146/148] publicsuffix-list-dafsa-0:202 100% | 3.2 MiB/s | 58.8 KiB | 00m00s [147/148] gdbm-libs-1:1.23-9.fc42.x86_6 100% | 2.9 MiB/s | 57.0 KiB | 00m00s [148/148] libunistring-0:1.1-9.fc42.x86 100% | 14.3 MiB/s | 542.5 KiB | 00m00s -------------------------------------------------------------------------------- [148/148] Total 100% | 26.1 MiB/s | 51.8 MiB | 00m02s Running transaction Importing OpenPGP key 0xE99D6AD1: UserID : "Fedora (41) " Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1 From : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary The key was successfully imported. [ 1/150] Verify package files 100% | 736.0 B/s | 148.0 B | 00m00s >>> Running pre-transaction scriptlet: filesystem-0:3.18-38.fc43.x86_64 >>> Finished pre-transaction scriptlet: filesystem-0:3.18-38.fc43.x86_64 >>> [RPM] /var/lib/mock/fedora-41-x86_64-1740738340.675980/root/var/cache/dnf/co [ 2/150] Prepare transaction 100% | 1.8 KiB/s | 148.0 B | 00m00s [ 3/150] Installing libgcc-0:15.0.1-0. 100% | 131.0 MiB/s | 268.3 KiB | 00m00s [ 4/150] Installing publicsuffix-list- 100% | 67.6 MiB/s | 69.2 KiB | 00m00s [ 5/150] Installing libssh-config-0:0. 100% | 0.0 B/s | 816.0 B | 00m00s [ 6/150] Installing fedora-release-ide 100% | 0.0 B/s | 976.0 B | 00m00s [ 7/150] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 8/150] Installing fedora-gpg-keys-0: 100% | 19.0 MiB/s | 174.8 KiB | 00m00s [ 9/150] Installing fedora-repos-0:43- 100% | 0.0 B/s | 5.7 KiB | 00m00s [ 10/150] Installing fedora-release-com 100% | 11.9 MiB/s | 24.4 KiB | 00m00s [ 11/150] Installing fedora-release-0:4 100% | 0.0 B/s | 124.0 B | 00m00s [ 12/150] Installing setup-0:2.15.0-12. 100% | 44.3 MiB/s | 726.6 KiB | 00m00s >>> [RPM] /etc/hosts created as /etc/hosts.rpmnew [ 13/150] Installing filesystem-0:3.18- 100% | 1.4 MiB/s | 212.4 KiB | 00m00s [ 14/150] Installing pcre2-syntax-0:10. 100% | 135.0 MiB/s | 276.4 KiB | 00m00s [ 15/150] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [ 16/150] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [ 17/150] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [ 18/150] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [ 19/150] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [ 20/150] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [ 21/150] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [ 22/150] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [ 23/150] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [ 24/150] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [ 25/150] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.2 KiB | 00m00s [ 26/150] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 740.0 B | 00m00s [ 27/150] Installing pkgconf-m4-0:2.3.0 100% | 14.5 MiB/s | 14.8 KiB | 00m00s [ 28/150] Installing ncurses-base-0:6.5 100% | 34.4 MiB/s | 352.2 KiB | 00m00s [ 29/150] Installing glibc-minimal-lang 100% | 0.0 B/s | 124.0 B | 00m00s [ 30/150] Installing ncurses-libs-0:6.5 100% | 132.9 MiB/s | 952.8 KiB | 00m00s [ 31/150] Installing glibc-0:2.41.9000- 100% | 155.0 MiB/s | 6.7 MiB | 00m00s [ 32/150] Installing bash-0:5.2.37-3.fc 100% | 199.5 MiB/s | 8.2 MiB | 00m00s [ 33/150] Installing glibc-common-0:2.4 100% | 48.6 MiB/s | 1.0 MiB | 00m00s [ 34/150] Installing glibc-gconv-extra- 100% | 135.4 MiB/s | 7.3 MiB | 00m00s [ 35/150] Installing zlib-ng-compat-0:2 100% | 135.2 MiB/s | 138.4 KiB | 00m00s [ 36/150] Installing xz-libs-1:5.6.3-3. 100% | 214.3 MiB/s | 219.4 KiB | 00m00s [ 37/150] Installing bzip2-libs-0:1.0.8 100% | 83.7 MiB/s | 85.7 KiB | 00m00s [ 38/150] Installing libuuid-0:2.40.4-7 100% | 37.5 MiB/s | 38.4 KiB | 00m00s [ 39/150] Installing libblkid-0:2.40.4- 100% | 128.6 MiB/s | 263.4 KiB | 00m00s [ 40/150] Installing libxcrypt-0:4.4.38 100% | 140.2 MiB/s | 287.2 KiB | 00m00s [ 41/150] Installing readline-0:8.2-12. 100% | 158.6 MiB/s | 487.1 KiB | 00m00s [ 42/150] Installing libzstd-0:1.5.7-1. 100% | 263.4 MiB/s | 809.1 KiB | 00m00s [ 43/150] Installing elfutils-libelf-0: 100% | 234.0 MiB/s | 1.2 MiB | 00m00s [ 44/150] Installing popt-0:1.19-8.fc42 100% | 34.0 MiB/s | 139.4 KiB | 00m00s [ 45/150] Installing libstdc++-0:15.0.1 100% | 255.3 MiB/s | 2.8 MiB | 00m00s [ 46/150] Installing gmp-1:6.3.0-3.fc43 100% | 267.4 MiB/s | 821.5 KiB | 00m00s [ 47/150] Installing libattr-0:2.5.2-5. 100% | 27.4 MiB/s | 28.1 KiB | 00m00s [ 48/150] Installing libacl-0:2.3.2-3.f 100% | 38.2 MiB/s | 39.2 KiB | 00m00s [ 49/150] Installing mpfr-0:4.2.1-6.fc4 100% | 203.5 MiB/s | 833.6 KiB | 00m00s [ 50/150] Installing gawk-0:5.3.1-1.fc4 100% | 77.0 MiB/s | 1.7 MiB | 00m00s [ 51/150] Installing dwz-0:0.15-9.fc42. 100% | 20.4 MiB/s | 292.4 KiB | 00m00s [ 52/150] Installing unzip-0:6.0-66.fc4 100% | 29.6 MiB/s | 393.8 KiB | 00m00s [ 53/150] Installing file-libs-0:5.46-1 100% | 474.3 MiB/s | 11.9 MiB | 00m00s [ 54/150] Installing file-0:5.46-1.fc42 100% | 3.2 MiB/s | 101.7 KiB | 00m00s [ 55/150] Installing crypto-policies-0: 100% | 14.5 MiB/s | 163.5 KiB | 00m00s [ 56/150] Installing libsmartcols-0:2.4 100% | 177.3 MiB/s | 181.5 KiB | 00m00s [ 57/150] Installing libsepol-0:3.8-1.f 100% | 201.9 MiB/s | 827.0 KiB | 00m00s [ 58/150] Installing libeconf-0:0.7.6-1 100% | 64.7 MiB/s | 66.2 KiB | 00m00s [ 59/150] Installing libcap-ng-0:0.8.5- 100% | 73.1 MiB/s | 74.8 KiB | 00m00s [ 60/150] Installing audit-libs-0:4.0.3 100% | 172.6 MiB/s | 353.4 KiB | 00m00s [ 61/150] Installing pam-libs-0:1.7.0-4 100% | 63.1 MiB/s | 129.1 KiB | 00m00s [ 62/150] Installing libcap-0:2.73-2.fc 100% | 12.9 MiB/s | 212.1 KiB | 00m00s [ 63/150] Installing systemd-libs-0:257 100% | 224.4 MiB/s | 2.2 MiB | 00m00s [ 64/150] Installing lua-libs-0:5.4.7-2 100% | 137.7 MiB/s | 282.1 KiB | 00m00s [ 65/150] Installing alternatives-0:1.3 100% | 5.1 MiB/s | 67.7 KiB | 00m00s [ 66/150] Installing pcre2-0:10.45-1.fc 100% | 227.6 MiB/s | 699.1 KiB | 00m00s [ 67/150] Installing libselinux-0:3.8-1 100% | 94.9 MiB/s | 194.3 KiB | 00m00s [ 68/150] Installing grep-0:3.11-10.fc4 100% | 50.2 MiB/s | 1.0 MiB | 00m00s [ 69/150] Installing findutils-1:4.10.0 100% | 85.2 MiB/s | 1.9 MiB | 00m00s [ 70/150] Installing sed-0:4.9-4.fc42.x 100% | 36.7 MiB/s | 865.5 KiB | 00m00s [ 71/150] Installing xz-1:5.6.3-3.fc42. 100% | 55.9 MiB/s | 1.2 MiB | 00m00s [ 72/150] Installing libmount-0:2.40.4- 100% | 174.5 MiB/s | 357.4 KiB | 00m00s [ 73/150] Installing lz4-libs-0:1.10.0- 100% | 154.7 MiB/s | 158.5 KiB | 00m00s [ 74/150] Installing libffi-0:3.4.6-5.f 100% | 81.7 MiB/s | 83.7 KiB | 00m00s [ 75/150] Installing libtasn1-0:4.20.0- 100% | 87.0 MiB/s | 178.1 KiB | 00m00s [ 76/150] Installing p11-kit-0:0.25.5-5 100% | 80.9 MiB/s | 2.2 MiB | 00m00s [ 77/150] Installing libunistring-0:1.1 100% | 246.7 MiB/s | 1.7 MiB | 00m00s [ 78/150] Installing libidn2-0:2.3.7-3. 100% | 65.4 MiB/s | 335.0 KiB | 00m00s [ 79/150] Installing libpsl-0:0.21.5-5. 100% | 75.7 MiB/s | 77.5 KiB | 00m00s [ 80/150] Installing p11-kit-trust-0:0. 100% | 11.8 MiB/s | 397.2 KiB | 00m00s [ 81/150] Installing zstd-0:1.5.7-1.fc4 100% | 85.5 MiB/s | 1.7 MiB | 00m00s [ 82/150] Installing util-linux-core-0: 100% | 62.0 MiB/s | 1.4 MiB | 00m00s [ 83/150] Installing tar-2:1.35-5.fc42. 100% | 113.9 MiB/s | 3.0 MiB | 00m00s [ 84/150] Installing libsemanage-0:3.8- 100% | 101.0 MiB/s | 310.2 KiB | 00m00s [ 85/150] Installing shadow-utils-2:4.1 100% | 85.5 MiB/s | 4.0 MiB | 00m00s [ 86/150] Installing systemd-standalone 100% | 20.9 MiB/s | 277.8 KiB | 00m00s [ 87/150] Installing zip-0:3.0-43.fc42. 100% | 42.9 MiB/s | 702.4 KiB | 00m00s [ 88/150] Installing libfdisk-0:2.40.4- 100% | 182.4 MiB/s | 373.5 KiB | 00m00s [ 89/150] Installing bzip2-0:1.0.8-20.f 100% | 7.2 MiB/s | 103.8 KiB | 00m00s [ 90/150] Installing libxml2-0:2.12.9-2 100% | 85.4 MiB/s | 1.7 MiB | 00m00s [ 91/150] Installing add-determinism-0: 100% | 117.4 MiB/s | 2.5 MiB | 00m00s [ 92/150] Installing build-reproducibil 100% | 1.0 MiB/s | 1.0 KiB | 00m00s [ 93/150] Installing filesystem-srpm-ma 100% | 38.0 MiB/s | 38.9 KiB | 00m00s [ 94/150] Installing ed-0:1.21-2.fc42.x 100% | 11.2 MiB/s | 148.8 KiB | 00m00s [ 95/150] Installing patch-0:2.7.6-26.f 100% | 18.1 MiB/s | 260.2 KiB | 00m00s [ 96/150] Installing elfutils-default-y 100% | 107.5 KiB/s | 2.0 KiB | 00m00s [ 97/150] Installing elfutils-libs-0:0. 100% | 131.3 MiB/s | 672.1 KiB | 00m00s [ 98/150] Installing cpio-0:2.15-2.fc41 100% | 52.4 MiB/s | 1.1 MiB | 00m00s [ 99/150] Installing diffutils-0:3.10-9 100% | 72.3 MiB/s | 1.6 MiB | 00m00s [100/150] Installing sqlite-libs-0:3.49 100% | 217.7 MiB/s | 1.5 MiB | 00m00s [101/150] Installing libgomp-0:15.0.1-0 100% | 174.9 MiB/s | 537.3 KiB | 00m00s [102/150] Installing jansson-0:2.14-2.f 100% | 92.2 MiB/s | 94.4 KiB | 00m00s [103/150] Installing libpkgconf-0:2.3.0 100% | 77.4 MiB/s | 79.2 KiB | 00m00s [104/150] Installing pkgconf-0:2.3.0-2. 100% | 6.8 MiB/s | 91.0 KiB | 00m00s [105/150] Installing pkgconf-pkg-config 100% | 147.8 KiB/s | 1.8 KiB | 00m00s [106/150] Installing json-c-0:0.18-2.fc 100% | 85.9 MiB/s | 88.0 KiB | 00m00s [107/150] Installing libnghttp2-0:1.64. 100% | 167.5 MiB/s | 171.5 KiB | 00m00s [108/150] Installing xxhash-libs-0:0.8. 100% | 89.4 MiB/s | 91.6 KiB | 00m00s [109/150] Installing libbrotli-0:1.1.0- 100% | 205.9 MiB/s | 843.6 KiB | 00m00s [110/150] Installing keyutils-libs-0:1. 100% | 58.3 MiB/s | 59.7 KiB | 00m00s [111/150] Installing libcom_err-0:1.47. 100% | 66.6 MiB/s | 68.2 KiB | 00m00s [112/150] Installing libverto-0:0.3.2-1 100% | 26.6 MiB/s | 27.2 KiB | 00m00s [113/150] Installing libtool-ltdl-0:2.5 100% | 69.6 MiB/s | 71.2 KiB | 00m00s [114/150] Installing gdbm-libs-1:1.23-9 100% | 64.2 MiB/s | 131.6 KiB | 00m00s [115/150] Installing cyrus-sasl-lib-0:2 100% | 104.7 MiB/s | 2.3 MiB | 00m00s [116/150] Installing coreutils-common-0 100% | 232.4 MiB/s | 11.2 MiB | 00m00s [117/150] Installing openssl-libs-1:3.2 100% | 270.2 MiB/s | 7.8 MiB | 00m00s [118/150] Installing coreutils-0:9.6-2. 100% | 97.4 MiB/s | 5.5 MiB | 00m00s [119/150] Installing ca-certificates-0: 100% | 1.1 MiB/s | 2.4 MiB | 00m02s [120/150] Installing libarchive-0:3.7.7 100% | 130.1 MiB/s | 932.6 KiB | 00m00s [121/150] Installing krb5-libs-0:1.21.3 100% | 153.3 MiB/s | 2.3 MiB | 00m00s [122/150] Installing libssh-0:0.11.1-4. 100% | 138.6 MiB/s | 567.5 KiB | 00m00s [123/150] Installing gzip-0:1.13-3.fc42 100% | 18.5 MiB/s | 398.4 KiB | 00m00s [124/150] Installing rpm-sequoia-0:1.7. 100% | 241.4 MiB/s | 2.4 MiB | 00m00s [125/150] Installing rpm-libs-0:4.20.1- 100% | 176.6 MiB/s | 723.4 KiB | 00m00s [126/150] Installing rpm-build-libs-0:4 100% | 101.3 MiB/s | 207.4 KiB | 00m00s [127/150] Installing libevent-0:2.1.12- 100% | 221.4 MiB/s | 906.9 KiB | 00m00s [128/150] Installing openldap-0:2.6.9-3 100% | 128.7 MiB/s | 658.9 KiB | 00m00s [129/150] Installing libcurl-0:8.12.1-1 100% | 207.8 MiB/s | 851.2 KiB | 00m00s [130/150] Installing elfutils-debuginfo 100% | 6.0 MiB/s | 86.5 KiB | 00m00s [131/150] Installing elfutils-0:0.192-9 100% | 107.0 MiB/s | 2.7 MiB | 00m00s [132/150] Installing binutils-0:2.44-3. 100% | 207.2 MiB/s | 25.9 MiB | 00m00s [133/150] Installing gdb-minimal-0:16.2 100% | 218.0 MiB/s | 13.3 MiB | 00m00s [134/150] Installing debugedit-0:5.1-5. 100% | 13.6 MiB/s | 195.4 KiB | 00m00s [135/150] Installing curl-0:8.12.1-1.fc 100% | 11.5 MiB/s | 459.7 KiB | 00m00s [136/150] Installing rpm-0:4.20.1-1.fc4 100% | 56.8 MiB/s | 2.5 MiB | 00m00s [137/150] Installing efi-srpm-macros-0: 100% | 40.1 MiB/s | 41.1 KiB | 00m00s [138/150] Installing tree-sitter-srpm-m 100% | 7.2 MiB/s | 7.4 KiB | 00m00s [139/150] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [140/150] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [141/150] Installing forge-srpm-macros- 100% | 39.3 MiB/s | 40.3 KiB | 00m00s [142/150] Installing go-srpm-macros-0:3 100% | 60.5 MiB/s | 62.0 KiB | 00m00s [143/150] Installing fonts-srpm-macros- 100% | 55.7 MiB/s | 57.0 KiB | 00m00s [144/150] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [145/150] Installing redhat-rpm-config- 100% | 47.2 MiB/s | 193.5 KiB | 00m00s [146/150] Installing rpm-build-0:4.20.1 100% | 10.2 MiB/s | 177.4 KiB | 00m00s [147/150] Installing pyproject-srpm-mac 100% | 1.2 MiB/s | 2.5 KiB | 00m00s [148/150] Installing util-linux-0:2.40. 100% | 54.9 MiB/s | 3.5 MiB | 00m00s [149/150] Installing which-0:2.23-1.fc4 100% | 6.0 MiB/s | 85.6 KiB | 00m00s [150/150] Installing info-0:7.2-3.fc42. 100% | 124.9 KiB/s | 358.3 KiB | 00m03s Warning: skipped OpenPGP checks for 143 packages from repositories: copr_base, http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.6.0-1.fc43.x86_64 alternatives-1.31-3.fc42.x86_64 ansible-srpm-macros-1-17.1.fc42.noarch audit-libs-4.0.3-2.fc42.x86_64 bash-5.2.37-3.fc43.x86_64 binutils-2.44-3.fc43.x86_64 build-reproducibility-srpm-macros-0.6.0-1.fc43.noarch bzip2-1.0.8-20.fc42.x86_64 bzip2-libs-1.0.8-20.fc42.x86_64 ca-certificates-2024.2.69_v8.0.401-5.fc42.noarch coreutils-9.6-2.fc43.x86_64 coreutils-common-9.6-2.fc43.x86_64 cpio-2.15-2.fc41.x86_64 crypto-policies-20250214-1.gitff7551b.fc43.noarch curl-8.12.1-1.fc43.x86_64 cyrus-sasl-lib-2.1.28-30.fc42.x86_64 debugedit-5.1-5.fc43.x86_64 diffutils-3.10-9.fc42.x86_64 dwz-0.15-9.fc42.x86_64 ed-1.21-2.fc42.x86_64 efi-srpm-macros-6-2.fc42.noarch elfutils-0.192-9.fc41.x86_64 elfutils-debuginfod-client-0.192-9.fc41.x86_64 elfutils-default-yama-scope-0.192-9.fc41.noarch elfutils-libelf-0.192-9.fc41.x86_64 elfutils-libs-0.192-9.fc41.x86_64 fedora-gpg-keys-43-0.1.noarch fedora-release-43-0.5.noarch fedora-release-common-43-0.5.noarch fedora-release-identity-basic-43-0.5.noarch fedora-repos-43-0.1.noarch fedora-repos-rawhide-43-0.1.noarch file-5.46-1.fc42.x86_64 file-libs-5.46-1.fc42.x86_64 filesystem-3.18-38.fc43.x86_64 filesystem-srpm-macros-3.18-38.fc43.noarch findutils-4.10.0-5.fc42.x86_64 fonts-srpm-macros-2.0.5-21.fc42.noarch forge-srpm-macros-0.4.0-2.fc42.noarch fpc-srpm-macros-1.3-14.fc42.noarch gawk-5.3.1-1.fc42.x86_64 gdb-minimal-16.2-2.fc43.x86_64 gdbm-libs-1.23-9.fc42.x86_64 ghc-srpm-macros-1.9.2-2.fc42.noarch glibc-2.41.9000-1.fc43.x86_64 glibc-common-2.41.9000-1.fc43.x86_64 glibc-gconv-extra-2.41.9000-1.fc43.x86_64 glibc-minimal-langpack-2.41.9000-1.fc43.x86_64 gmp-6.3.0-3.fc43.x86_64 gnat-srpm-macros-6-7.fc42.noarch go-srpm-macros-3.6.0-6.fc42.noarch gpg-pubkey-e99d6ad1-64d2612c grep-3.11-10.fc42.x86_64 gzip-1.13-3.fc42.x86_64 info-7.2-3.fc42.x86_64 jansson-2.14-2.fc42.x86_64 json-c-0.18-2.fc42.x86_64 kernel-srpm-macros-1.0-25.fc42.noarch keyutils-libs-1.6.3-5.fc42.x86_64 krb5-libs-1.21.3-5.fc42.x86_64 libacl-2.3.2-3.fc42.x86_64 libarchive-3.7.7-3.fc43.x86_64 libattr-2.5.2-5.fc42.x86_64 libblkid-2.40.4-7.fc43.x86_64 libbrotli-1.1.0-6.fc42.x86_64 libcap-2.73-2.fc42.x86_64 libcap-ng-0.8.5-4.fc42.x86_64 libcom_err-1.47.2-3.fc42.x86_64 libcurl-8.12.1-1.fc43.x86_64 libeconf-0.7.6-1.fc43.x86_64 libevent-2.1.12-15.fc42.x86_64 libfdisk-2.40.4-7.fc43.x86_64 libffi-3.4.6-5.fc42.x86_64 libgcc-15.0.1-0.8.fc43.x86_64 libgomp-15.0.1-0.8.fc43.x86_64 libidn2-2.3.7-3.fc42.x86_64 libmount-2.40.4-7.fc43.x86_64 libnghttp2-1.64.0-3.fc42.x86_64 libpkgconf-2.3.0-2.fc42.x86_64 libpsl-0.21.5-5.fc42.x86_64 libselinux-3.8-1.fc42.x86_64 libsemanage-3.8-1.fc42.x86_64 libsepol-3.8-1.fc42.x86_64 libsmartcols-2.40.4-7.fc43.x86_64 libssh-0.11.1-4.fc42.x86_64 libssh-config-0.11.1-4.fc42.noarch libstdc++-15.0.1-0.8.fc43.x86_64 libtasn1-4.20.0-1.fc43.x86_64 libtool-ltdl-2.5.4-4.fc42.x86_64 libunistring-1.1-9.fc42.x86_64 libuuid-2.40.4-7.fc43.x86_64 libverto-0.3.2-10.fc42.x86_64 libxcrypt-4.4.38-6.fc43.x86_64 libxml2-2.12.9-2.fc42.x86_64 libzstd-1.5.7-1.fc43.x86_64 lua-libs-5.4.7-2.fc42.x86_64 lua-srpm-macros-1-15.fc42.noarch lz4-libs-1.10.0-2.fc42.x86_64 mpfr-4.2.1-6.fc42.x86_64 ncurses-base-6.5-5.20250125.fc42.noarch ncurses-libs-6.5-5.20250125.fc42.x86_64 ocaml-srpm-macros-10-4.fc42.noarch openblas-srpm-macros-2-19.fc42.noarch openldap-2.6.9-3.fc42.x86_64 openssl-libs-3.2.4-2.fc43.x86_64 p11-kit-0.25.5-5.fc42.x86_64 p11-kit-trust-0.25.5-5.fc42.x86_64 package-notes-srpm-macros-0.5-13.fc42.noarch pam-libs-1.7.0-4.fc42.x86_64 patch-2.7.6-26.fc42.x86_64 pcre2-10.45-1.fc43.x86_64 pcre2-syntax-10.45-1.fc43.noarch perl-srpm-macros-1-57.fc42.noarch pkgconf-2.3.0-2.fc42.x86_64 pkgconf-m4-2.3.0-2.fc42.noarch pkgconf-pkg-config-2.3.0-2.fc42.x86_64 popt-1.19-8.fc42.x86_64 publicsuffix-list-dafsa-20250116-1.fc42.noarch pyproject-srpm-macros-1.17.0-1.fc43.noarch python-srpm-macros-3.13-4.fc42.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.8.2-2.fc43.noarch readline-8.2-12.fc42.x86_64 redhat-rpm-config-342-2.fc42.noarch rpm-4.20.1-1.fc43.x86_64 rpm-build-4.20.1-1.fc43.x86_64 rpm-build-libs-4.20.1-1.fc43.x86_64 rpm-libs-4.20.1-1.fc43.x86_64 rpm-sequoia-1.7.0-5.fc43.x86_64 rust-srpm-macros-26.3-4.fc42.noarch sed-4.9-4.fc42.x86_64 setup-2.15.0-12.fc43.noarch shadow-utils-4.17.0-4.fc42.x86_64 sqlite-libs-3.49.0-1.fc43.x86_64 systemd-libs-257.3-7.fc43.x86_64 systemd-standalone-sysusers-257.3-7.fc43.x86_64 tar-1.35-5.fc42.x86_64 tree-sitter-srpm-macros-0.1.0-8.fc42.noarch unzip-6.0-66.fc42.x86_64 util-linux-2.40.4-7.fc43.x86_64 util-linux-core-2.40.4-7.fc43.x86_64 which-2.23-1.fc42.x86_64 xxhash-libs-0.8.3-2.fc42.x86_64 xz-5.6.3-3.fc42.x86_64 xz-libs-5.6.3-3.fc42.x86_64 zig-srpm-macros-1-4.fc42.noarch zip-3.0-43.fc42.x86_64 zlib-ng-compat-2.2.4-2.fc43.x86_64 zstd-1.5.7-1.fc43.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1740528000 Wrote: /builddir/build/SRPMS/R-Rhtslib-2.4.1-4.fc43.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-x86_64-1740738340.675980/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-ib612x1w/R-Rhtslib/R-Rhtslib.spec) Config(child) 0 minutes 39 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-Rhtslib-2.4.1-4.fc43.src.rpm) Config(fedora-41-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1740738340.675980/root. INFO: reusing tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1740738340.675980/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1740738340.675980/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc41.x86_64 rpm-sequoia-1.7.0-5.fc41.x86_64 dnf5-5.2.10.0-2.fc41.x86_64 dnf5-plugins-5.2.10.0-2.fc41.x86_64 Finish: chroot init Start: build phase for R-Rhtslib-2.4.1-4.fc43.src.rpm Start: build setup for R-Rhtslib-2.4.1-4.fc43.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1740528000 Wrote: /builddir/build/SRPMS/R-Rhtslib-2.4.1-4.fc43.src.rpm Updating and loading repositories: fedora 100% | 1.0 MiB/s | 30.5 KiB | 00m00s updates 100% | 896.8 KiB/s | 27.8 KiB | 00m00s Copr repository 100% | 33.4 KiB/s | 1.5 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 41.2 KiB/s | 3.8 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: R-devel x86_64 4.4.2-5.fc43 copr_base 0.0 B bzip2-devel x86_64 1.0.8-20.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 309.8 KiB libcurl-devel x86_64 8.12.1-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 MiB xz-devel x86_64 1:5.6.3-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 255.6 KiB zlib-ng-compat-devel x86_64 2.2.4-2.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 107.0 KiB Installing dependencies: R-core x86_64 4.4.2-5.fc43 copr_base 101.5 MiB R-core-devel x86_64 4.4.2-5.fc43 copr_base 396.0 KiB R-java x86_64 4.4.2-5.fc43 copr_base 0.0 B R-java-devel x86_64 4.4.2-5.fc43 copr_base 0.0 B R-rpm-macros noarch 1.2.1-12.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.6 KiB abattis-cantarell-vf-fonts noarch 0.301-14.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 192.7 KiB alsa-lib x86_64 1.2.13-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB annobin-docs noarch 12.88-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 98.6 KiB annobin-plugin-gcc x86_64 12.88-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 991.7 KiB avahi-libs x86_64 0.9~rc2-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 183.6 KiB brotli x86_64 1.1.0-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 31.6 KiB brotli-devel x86_64 1.1.0-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 65.6 KiB cairo x86_64 1.18.2-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB cmake-filesystem x86_64 4.0.0~rc2-3.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B cpp x86_64 15.0.1-0.8.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37.6 MiB cups-filesystem noarch 1:2.4.11-13.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B cups-libs x86_64 1:2.4.11-13.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 618.7 KiB dbus-libs x86_64 1:1.16.0-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 349.5 KiB default-fonts-core-sans noarch 4.2-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.9 KiB desktop-file-utils x86_64 0.27-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 230.0 KiB emacs-filesystem noarch 1:30.0-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B flexiblas x86_64 3.4.5-1.fc43 copr_base 50.4 KiB flexiblas-devel x86_64 3.4.5-1.fc43 copr_base 4.9 MiB flexiblas-netlib x86_64 3.4.5-1.fc43 copr_base 10.9 MiB flexiblas-netlib64 x86_64 3.4.5-1.fc43 copr_base 11.0 MiB flexiblas-openblas-openmp x86_64 3.4.5-1.fc43 copr_base 39.2 KiB flexiblas-openblas-openmp64 x86_64 3.4.5-1.fc43 copr_base 39.2 KiB fontconfig x86_64 2.16.0-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 764.7 KiB fonts-filesystem noarch 1:2.0.5-21.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B freetype x86_64 2.13.3-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 858.2 KiB fribidi x86_64 1.0.16-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 194.3 KiB gcc x86_64 15.0.1-0.8.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 110.2 MiB gcc-c++ x86_64 15.0.1-0.8.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.8 MiB gcc-gfortran x86_64 15.0.1-0.8.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39.8 MiB gcc-plugin-annobin x86_64 15.0.1-0.8.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 57.2 KiB glib2 x86_64 2.83.2-6.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.7 MiB glibc-devel x86_64 2.41.9000-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB gnutls x86_64 3.8.9-4.fc43 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 121.4 KiB kernel-headers x86_64 6.14.0-0.rc4.36.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.5 MiB keyutils-libs-devel x86_64 1.6.3-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 48.2 KiB krb5-devel x86_64 1.21.3-5.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 705.9 KiB less x86_64 668-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 405.8 KiB libICE x86_64 1.1.2-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 198.4 KiB libRmath x86_64 4.4.2-5.fc43 copr_base 238.7 KiB libRmath-devel x86_64 4.4.2-5.fc43 copr_base 17.4 KiB libSM x86_64 1.2.5-2.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 105.0 KiB libX11 x86_64 1.8.11-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 MiB libX11-common noarch 1.8.11-1.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB 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tre-common noarch 0.8.0-47.20140228gitc2f5d13.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 81.0 KiB tre-devel x86_64 0.8.0-47.20140228gitc2f5d13.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 10.7 KiB ttmkfdir x86_64 3.0.9-72.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 118.5 KiB tzdata-java noarch 2025a-1.fc43 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 99.4 KiB xdg-utils noarch 1.2.1-3.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 346.3 KiB xml-common noarch 0.6.3-66.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.4 KiB xorg-x11-fonts-Type1 noarch 7.5-40.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 863.3 KiB xorg-x11-proto-devel noarch 2024.1-4.fc42 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB Transaction Summary: Installing: 136 packages Total size of inbound packages is 259 MiB. Need to download 259 MiB. After this operation, 806 MiB extra will be used (install 806 MiB, remove 0 B). [ 1/136] R-devel-0:4.4.2-5.fc43.x86_64 100% | 132.9 KiB/s | 9.3 KiB | 00m00s [ 2/136] bzip2-devel-0:1.0.8-20.fc42.x 100% | 2.3 MiB/s | 213.7 KiB | 00m00s [ 3/136] libcurl-devel-0:8.12.1-1.fc43 100% | 7.5 MiB/s | 809.2 KiB | 00m00s [ 4/136] zlib-ng-compat-devel-0:2.2.4- 100% | 2.2 MiB/s | 38.3 KiB | 00m00s [ 5/136] cmake-filesystem-0:4.0.0~rc2- 100% | 988.1 KiB/s | 17.8 KiB | 00m00s [ 6/136] xz-devel-1:5.6.3-3.fc42.x86_6 100% | 1.0 MiB/s | 62.3 KiB | 00m00s [ 7/136] brotli-devel-0:1.1.0-6.fc42.x 100% | 1.8 MiB/s | 33.9 KiB | 00m00s [ 8/136] brotli-0:1.1.0-6.fc42.x86_64 100% | 1.0 MiB/s | 19.9 KiB | 00m00s [ 9/136] krb5-devel-0:1.21.3-5.fc42.x8 100% | 6.9 MiB/s | 133.4 KiB | 00m00s [ 10/136] libkadm5-0:1.21.3-5.fc42.x86_ 100% | 3.0 MiB/s | 77.4 KiB | 00m00s [ 11/136] libidn2-devel-0:2.3.7-3.fc42. 100% | 3.6 MiB/s | 63.0 KiB | 00m00s [ 12/136] libnghttp2-devel-0:1.64.0-3.f 100% | 2.7 MiB/s | 55.7 KiB | 00m00s [ 13/136] libpsl-devel-0:0.21.5-5.fc42. 100% | 1.7 MiB/s | 33.2 KiB | 00m00s [ 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flexiblas-netlib-0:3.4.5-1.fc 100% | 24.2 MiB/s | 3.4 MiB | 00m00s [ 53/136] less-0:668-2.fc42.x86_64 100% | 5.6 MiB/s | 190.0 KiB | 00m00s [ 54/136] libXmu-0:1.2.1-3.fc42.x86_64 100% | 915.0 KiB/s | 78.7 KiB | 00m00s [ 55/136] glib2-0:2.83.2-6.fc42.x86_64 100% | 8.8 MiB/s | 3.1 MiB | 00m00s [ 56/136] libjpeg-turbo-0:3.1.0-2.fc42. 100% | 4.7 MiB/s | 236.2 KiB | 00m00s [ 57/136] libpng-2:1.6.47-1.fc43.x86_64 100% | 3.0 MiB/s | 122.4 KiB | 00m00s [ 58/136] libXt-0:1.3.1-2.fc42.x86_64 100% | 702.7 KiB/s | 181.3 KiB | 00m00s [ 59/136] libtiff-0:4.7.0-3.fc42.x86_64 100% | 3.0 MiB/s | 220.4 KiB | 00m00s [ 60/136] pango-0:1.56.1-1.fc42.x86_64 100% | 7.0 MiB/s | 350.4 KiB | 00m00s [ 61/136] xdg-utils-0:1.2.1-3.fc42.noar 100% | 2.2 MiB/s | 79.4 KiB | 00m00s [ 62/136] desktop-file-utils-0:0.27-3.f 100% | 1.6 MiB/s | 68.7 KiB | 00m00s [ 63/136] fontconfig-0:2.16.0-2.fc42.x8 100% | 3.7 MiB/s | 259.1 KiB | 00m00s [ 64/136] libRmath-0:4.4.2-5.fc43.x86_6 100% | 910.7 KiB/s | 120.2 KiB | 00m00s [ 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00m00s [ 78/136] libSM-0:1.2.5-2.fc42.x86_64 100% | 2.4 MiB/s | 44.4 KiB | 00m00s [ 79/136] libXext-0:1.3.6-3.fc42.x86_64 100% | 1.8 MiB/s | 39.3 KiB | 00m00s [ 80/136] libxcb-0:1.17.0-5.fc42.x86_64 100% | 8.5 MiB/s | 234.1 KiB | 00m00s [ 81/136] xorg-x11-proto-devel-0:2024.1 100% | 6.3 MiB/s | 265.8 KiB | 00m00s [ 82/136] graphite2-0:1.3.14-18.fc42.x8 100% | 2.5 MiB/s | 96.3 KiB | 00m00s [ 83/136] libxcb-devel-0:1.17.0-5.fc42. 100% | 11.7 MiB/s | 1.1 MiB | 00m00s [ 84/136] nettle-0:3.10.1-1.fc43.x86_64 100% | 13.8 MiB/s | 424.6 KiB | 00m00s [ 85/136] libmpc-0:1.3.1-7.fc42.x86_64 100% | 3.6 MiB/s | 70.9 KiB | 00m00s [ 86/136] default-fonts-core-sans-0:4.2 100% | 1.4 MiB/s | 25.2 KiB | 00m00s [ 87/136] glibc-devel-0:2.41.9000-1.fc4 100% | 15.6 MiB/s | 574.0 KiB | 00m00s [ 88/136] fonts-filesystem-1:2.0.5-21.f 100% | 506.6 KiB/s | 8.6 KiB | 00m00s [ 89/136] xml-common-0:0.6.3-66.fc42.no 100% | 1.7 MiB/s | 31.2 KiB | 00m00s [ 90/136] emacs-filesystem-1:30.0-4.fc4 100% | 432.7 KiB/s | 7.4 KiB | 00m00s [ 91/136] gnutls-0:3.8.9-4.fc43.x86_64 100% | 10.0 MiB/s | 1.2 MiB | 00m00s [ 92/136] abattis-cantarell-vf-fonts-0: 100% | 4.7 MiB/s | 120.3 KiB | 00m00s [ 93/136] google-noto-fonts-common-0:20 100% | 1.0 MiB/s | 17.0 KiB | 00m00s [ 94/136] google-noto-sans-vf-fonts-0:2 100% | 17.1 MiB/s | 614.5 KiB | 00m00s [ 95/136] flexiblas-0:3.4.5-1.fc43.x86_ 100% | 2.0 MiB/s | 26.8 KiB | 00m00s [ 96/136] pixman-0:0.44.2-2.fc42.x86_64 100% | 8.0 MiB/s | 277.4 KiB | 00m00s [ 97/136] flexiblas-openblas-openmp-0:3 100% | 934.8 KiB/s | 17.8 KiB | 00m00s [ 98/136] java-21-openjdk-1:21.0.6.0.7- 100% | 7.1 MiB/s | 416.7 KiB | 00m00s [ 99/136] flexiblas-netlib64-0:3.4.5-1. 100% | 47.0 MiB/s | 3.2 MiB | 00m00s [100/136] R-java-0:4.4.2-5.fc43.x86_64 100% | 520.4 KiB/s | 9.9 KiB | 00m00s [101/136] libXau-devel-0:1.0.12-2.fc42. 100% | 778.2 KiB/s | 14.0 KiB | 00m00s [102/136] libXau-0:1.0.12-2.fc42.x86_64 100% | 1.9 MiB/s | 33.6 KiB | 00m00s [103/136] alsa-lib-0:1.2.13-4.fc42.x86_ 100% | 14.2 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| 1.6 MiB/s | 29.3 KiB | 00m00s [117/136] avahi-libs-0:0.9~rc2-2.fc42.x 100% | 3.8 MiB/s | 69.1 KiB | 00m00s [118/136] dbus-libs-1:1.16.0-3.fc42.x86 100% | 6.9 MiB/s | 149.4 KiB | 00m00s [119/136] kernel-headers-0:6.14.0-0.rc4 100% | 13.5 MiB/s | 1.5 MiB | 00m00s [120/136] openblas-0:0.3.29-1.fc42.x86_ 100% | 2.1 MiB/s | 42.3 KiB | 00m00s [121/136] flexiblas-openblas-openmp64-0 100% | 937.0 KiB/s | 17.8 KiB | 00m00s [122/136] openblas-openmp-0:0.3.29-1.fc 100% | 26.3 MiB/s | 5.4 MiB | 00m00s [123/136] mkfontscale-0:1.2.3-2.fc42.x8 100% | 1.7 MiB/s | 31.6 KiB | 00m00s [124/136] ttmkfdir-0:3.0.9-72.fc42.x86_ 100% | 3.1 MiB/s | 56.2 KiB | 00m00s [125/136] nspr-0:4.36.0-4.fc43.x86_64 100% | 7.1 MiB/s | 137.9 KiB | 00m00s [126/136] nss-util-0:3.108.0-3.fc43.x86 100% | 4.0 MiB/s | 86.4 KiB | 00m00s [127/136] nss-softokn-0:3.108.0-3.fc43. 100% | 14.0 MiB/s | 415.0 KiB | 00m00s [128/136] nss-softokn-freebl-0:3.108.0- 100% | 11.5 MiB/s | 330.3 KiB | 00m00s [129/136] libfontenc-0:1.1.8-3.fc42.x86 100% | 1.8 MiB/s | 32.4 KiB | 00m00s [130/136] openblas-openmp64-0:0.3.29-1. 100% | 15.8 MiB/s | 5.2 MiB | 00m00s [131/136] tcl8-1:8.6.15-10.fc42.x86_64 100% | 19.5 MiB/s | 1.1 MiB | 00m00s [132/136] gcc-plugin-annobin-0:15.0.1-0 100% | 2.2 MiB/s | 41.4 KiB | 00m00s [133/136] annobin-plugin-gcc-0:12.88-1. 100% | 21.8 MiB/s | 981.9 KiB | 00m00s [134/136] tk8-1:8.6.15-5.fc42.x86_64 100% | 15.7 MiB/s | 1.1 MiB | 00m00s [135/136] annobin-docs-0:12.88-1.fc42.n 100% | 1.3 MiB/s | 91.7 KiB | 00m00s [136/136] java-21-openjdk-headless-1:21 100% | 18.5 MiB/s | 47.1 MiB | 00m03s -------------------------------------------------------------------------------- [136/136] Total 100% | 47.3 MiB/s | 259.0 MiB | 00m05s Running transaction [ 1/138] Verify package files 100% | 150.0 B/s | 136.0 B | 00m01s >>> Running pre-transaction scriptlet: java-21-openjdk-headless-1:21.0.6.0.7-7.f >>> Finished pre-transaction scriptlet: java-21-openjdk-headless-1:21.0.6.0.7-7. >>> [RPM] /var/lib/mock/fedora-41-x86_64-1740738340.675980/root/var/cache/dnf/co [ 2/138] Prepare transaction 100% | 533.0 B/s | 136.0 B | 00m00s [ 3/138] Installing nspr-0:4.36.0-4.fc 100% | 103.3 MiB/s | 317.3 KiB | 00m00s [ 4/138] Installing libgfortran-0:15.0 100% | 299.3 MiB/s | 3.3 MiB | 00m00s [ 5/138] Installing nss-util-0:3.108.0 100% | 100.4 MiB/s | 205.7 KiB | 00m00s [ 6/138] Installing libmpc-0:1.3.1-7.f 100% | 81.1 MiB/s | 166.1 KiB | 00m00s [ 7/138] Installing libquadmath-0:15.0 100% | 157.8 MiB/s | 323.2 KiB | 00m00s [ 8/138] Installing fonts-filesystem-1 100% | 769.5 KiB/s | 788.0 B | 00m00s [ 9/138] Installing libpng-2:1.6.47-1. 100% | 116.7 MiB/s | 239.0 KiB | 00m00s [ 10/138] Installing cmake-filesystem-0 100% | 2.4 MiB/s | 7.5 KiB | 00m00s [ 11/138] Installing zlib-ng-compat-dev 100% | 53.0 MiB/s | 108.5 KiB | 00m00s [ 12/138] Installing tcl8-1:8.6.15-10.f 100% | 109.9 MiB/s | 4.3 MiB | 00m00s [ 13/138] Installing openblas-0:0.3.29- 100% | 110.8 MiB/s | 113.5 KiB | 00m00s [ 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glibc-devel-0:2.41 100% | 80.5 MiB/s | 2.3 MiB | 00m00s [ 53/138] Installing gcc-0:15.0.1-0.8.f 100% | 274.2 MiB/s | 110.2 MiB | 00m00s [ 54/138] Installing libquadmath-devel- 100% | 11.4 MiB/s | 23.4 KiB | 00m00s [ 55/138] Installing gcc-gfortran-0:15. 100% | 238.7 MiB/s | 39.9 MiB | 00m00s [ 56/138] Installing tzdata-java-0:2025 100% | 97.5 MiB/s | 99.8 KiB | 00m00s [ 57/138] Installing lksctp-tools-0:1.0 100% | 14.6 MiB/s | 254.7 KiB | 00m00s [ 58/138] Installing javapackages-files 100% | 2.7 MiB/s | 5.5 KiB | 00m00s [ 59/138] Installing cups-filesystem-1: 100% | 1.7 MiB/s | 1.8 KiB | 00m00s [ 60/138] Installing alsa-lib-0:1.2.13- 100% | 56.4 MiB/s | 1.4 MiB | 00m00s [ 61/138] Installing pixman-0:0.44.2-2. 100% | 164.9 MiB/s | 675.3 KiB | 00m00s [ 62/138] Installing google-noto-fonts- 100% | 18.1 MiB/s | 18.5 KiB | 00m00s [ 63/138] Installing google-noto-sans-v 100% | 231.9 MiB/s | 1.4 MiB | 00m00s [ 64/138] Installing default-fonts-core 100% | 8.9 MiB/s | 18.2 KiB | 00m00s [ 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Finish: build setup for R-Rhtslib-2.4.1-4.fc43.src.rpm Start: rpmbuild R-Rhtslib-2.4.1-4.fc43.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1740528000 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.hIDymI Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.5tMXg9 + umask 022 + cd /builddir/build/BUILD/R-Rhtslib-2.4.1-build + cd /builddir/build/BUILD/R-Rhtslib-2.4.1-build + rm -rf Rhtslib + /usr/bin/mkdir -p Rhtslib + cd Rhtslib + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Rhtslib_2.4.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + pushd Rhtslib ~/build/BUILD/R-Rhtslib-2.4.1-build/Rhtslib/Rhtslib ~/build/BUILD/R-Rhtslib-2.4.1-build/Rhtslib Patch #0 (R-Rhtslib-zlibbioc.patch): + echo 'Patch #0 (R-Rhtslib-zlibbioc.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0 patching file DESCRIPTION patching file NAMESPACE Patch #1 (R-Rhtslib-buildroot-fix.patch): + echo 'Patch #1 (R-Rhtslib-buildroot-fix.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0 patching file src/Makevars.common + popd ~/build/BUILD/R-Rhtslib-2.4.1-build/Rhtslib + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.MOJiWm + umask 022 + cd /builddir/build/BUILD/R-Rhtslib-2.4.1-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Rhtslib + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.FQaxNm + umask 022 + cd /builddir/build/BUILD/R-Rhtslib-2.4.1-build + '[' /builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT ++ dirname /builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT + mkdir -p /builddir/build/BUILD/R-Rhtslib-2.4.1-build + mkdir /builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Rhtslib + mkdir -p /builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library + R CMD INSTALL -l /builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library Rhtslib * installing *source* package ‘Rhtslib’ ... ** using non-staged installation via StagedInstall field ** libs using C compiler: ‘gcc (GCC) 15.0.1 20250225 (Red Hat 15.0.1-0)’ cd "htslib-1.15.1" && make -f "Makefile.Rhtslib" make[1]: Entering directory '/builddir/build/BUILD/R-Rhtslib-2.4.1-build/Rhtslib/Rhtslib/src/htslib-1.15.1' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kfunc.o kfunc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kstring.o kstring.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bcf_sr_sort.o bcf_sr_sort.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bgzf.o bgzf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o errmod.o errmod.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o faidx.o faidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o header.o header.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile.o hfile.c echo '#define HTS_VERSION_TEXT "1.15.1"' > version.h echo '#define HTS_CC "gcc"' > config_vars.h echo '#define HTS_CPPFLAGS "-I/usr/local/include -D_FILE_OFFSET_BITS=64"' >> config_vars.h echo '#define HTS_CFLAGS "-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden"' >> config_vars.h echo '#define HTS_LDFLAGS "-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -fvisibility=hidden"' >> config_vars.h echo '#define HTS_LIBS "-lz -lm -lbz2 -llzma -lcurl"' >> config_vars.h gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts.o hts.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts_expr.o hts_expr.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts_os.o hts_os.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o md5.o md5.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o multipart.o multipart.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o probaln.o probaln.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o realn.o realn.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o regidx.o regidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o region.o region.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o sam.o sam.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o synced_bcf_reader.o synced_bcf_reader.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf_sweep.o vcf_sweep.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o tbx.o tbx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o textutils.o textutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o thread_pool.o thread_pool.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf.o vcf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcfutils.o vcfutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_codecs.o cram/cram_codecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_decode.o cram/cram_decode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_encode.o cram/cram_encode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_external.o cram/cram_external.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_index.o cram/cram_index.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_io.o cram/cram_io.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_stats.o cram/cram_stats.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/mFILE.o cram/mFILE.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/open_trace_file.o cram/open_trace_file.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/pooled_alloc.o cram/pooled_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/string_alloc.o cram/string_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/arith_dynamic.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/fqzcomp_qual.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/htscodecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/pack.o htscodecs/htscodecs/pack.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static4x16pr.c In file included from htscodecs/htscodecs/rANS_static4x16pr.c:74: In function ‘RansEncPutSymbol’, inlined from ‘rans_compress_O1_4x16.isra.0’ at htscodecs/htscodecs/rANS_static4x16pr.c:810:2: htscodecs/htscodecs/rANS_word.h:303:28: warning: ‘ptr’ may be used uninitialized [-Wmaybe-uninitialized] 303 | *pptr = (uint8_t *)(ptr-c); | ~~~~^~~ htscodecs/htscodecs/rANS_static4x16pr.c: In function ‘rans_compress_O1_4x16.isra.0’: htscodecs/htscodecs/rANS_static4x16pr.c:793:14: note: ‘ptr’ was declared here 793 | uint8_t* ptr = out_end; | ^~~ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rANS_static.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rle.o htscodecs/htscodecs/rle.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/tokenise_name3.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile_libcurl.o hfile_libcurl.c hfile_libcurl.c: In function ‘libcurl_open’: hfile_libcurl.c:1335:9: warning: ‘CURLINFO_CONTENT_LENGTH_DOWNLOAD’ is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] 1335 | if (curl_easy_getinfo(fp->easy, CURLINFO_CONTENT_LENGTH_DOWNLOAD, | ^~ In file included from hfile_libcurl.c:47: /usr/include/curl/curl.h:2897:3: note: declared here 2897 | CURLINFO_CONTENT_LENGTH_DOWNLOAD | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ar -rc libhts.a kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o hfile_libcurl.o ranlib libhts.a gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kfunc.pico kfunc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kstring.pico kstring.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bcf_sr_sort.pico bcf_sr_sort.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bgzf.pico bgzf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o errmod.pico errmod.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o faidx.pico faidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o header.pico header.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile.pico hfile.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts.pico hts.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts_expr.pico hts_expr.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts_os.pico hts_os.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o md5.pico md5.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o multipart.pico multipart.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o probaln.pico probaln.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o realn.pico realn.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o regidx.pico regidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o region.pico region.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o sam.pico sam.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o synced_bcf_reader.pico synced_bcf_reader.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf_sweep.pico vcf_sweep.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o tbx.pico tbx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o textutils.pico textutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o thread_pool.pico thread_pool.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf.pico vcf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcfutils.pico vcfutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_codecs.pico cram/cram_codecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_decode.pico cram/cram_decode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_encode.pico cram/cram_encode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_external.pico cram/cram_external.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_index.pico cram/cram_index.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_io.pico cram/cram_io.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_stats.pico cram/cram_stats.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/mFILE.pico cram/mFILE.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/open_trace_file.pico cram/open_trace_file.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/pooled_alloc.pico cram/pooled_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/string_alloc.pico cram/string_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/arith_dynamic.pico htscodecs/htscodecs/arith_dynamic.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/fqzcomp_qual.pico htscodecs/htscodecs/fqzcomp_qual.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/htscodecs.pico htscodecs/htscodecs/htscodecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/pack.pico htscodecs/htscodecs/pack.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rANS_static4x16pr.pico htscodecs/htscodecs/rANS_static4x16pr.c In file included from htscodecs/htscodecs/rANS_static4x16pr.c:74: In function ‘RansEncPutSymbol’, inlined from ‘rans_compress_O1_4x16.isra.0’ at htscodecs/htscodecs/rANS_static4x16pr.c:810:2: htscodecs/htscodecs/rANS_word.h:303:28: warning: ‘ptr’ may be used uninitialized [-Wmaybe-uninitialized] 303 | *pptr = (uint8_t *)(ptr-c); | ~~~~^~~ htscodecs/htscodecs/rANS_static4x16pr.c: In function ‘rans_compress_O1_4x16.isra.0’: htscodecs/htscodecs/rANS_static4x16pr.c:793:14: note: ‘ptr’ was declared here 793 | uint8_t* ptr = out_end; | ^~~ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rANS_static.pico htscodecs/htscodecs/rANS_static.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/rle.pico htscodecs/htscodecs/rle.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o htscodecs/htscodecs/tokenise_name3.pico htscodecs/htscodecs/tokenise_name3.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -fvisibility=hidden -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile_libcurl.pico hfile_libcurl.c hfile_libcurl.c: In function ‘libcurl_open’: hfile_libcurl.c:1335:9: warning: ‘CURLINFO_CONTENT_LENGTH_DOWNLOAD’ is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] 1335 | if (curl_easy_getinfo(fp->easy, CURLINFO_CONTENT_LENGTH_DOWNLOAD, | ^~ In file included from hfile_libcurl.c:47: /usr/include/curl/curl.h:2897:3: note: declared here 2897 | CURLINFO_CONTENT_LENGTH_DOWNLOAD | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -shared -Wl,-soname,libhts.so.3 -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -fvisibility=hidden -o libhts.so kfunc.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico header.pico hfile.pico hts.pico hts_expr.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico region.pico sam.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_stats.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/string_alloc.pico htscodecs/htscodecs/arith_dynamic.pico htscodecs/htscodecs/fqzcomp_qual.pico htscodecs/htscodecs/htscodecs.pico htscodecs/htscodecs/pack.pico htscodecs/htscodecs/rANS_static4x16pr.pico htscodecs/htscodecs/rANS_static.pico htscodecs/htscodecs/rle.pico htscodecs/htscodecs/tokenise_name3.pico hfile_libcurl.pico -lz -lm -lbz2 -llzma -lcurl -lpthread ln -sf libhts.so libhts.so.3 make[1]: Leaving directory '/builddir/build/BUILD/R-Rhtslib-2.4.1-build/Rhtslib/Rhtslib/src/htslib-1.15.1' mkdir -p "/builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library/Rhtslib/include/htslib" cd "htslib-1.15.1/htslib" && cp * "/builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library/Rhtslib/include/htslib" gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"htslib-1.15.1" -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c R_init_Rhtslib.c -o R_init_Rhtslib.o mkdir -p "/builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library/Rhtslib/usrlib" cd "htslib-1.15.1" && cp libhts.so libhts.a "/builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library/Rhtslib/usrlib" cd "/builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library/Rhtslib/usrlib" && ln -s libhts.so libhts.so.2 gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o Rhtslib.so R_init_Rhtslib.o /builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library/Rhtslib/usrlib/libhts.a -lcurl -lbz2 -llzma -lz -L/usr/lib64/R/lib -lR mkdir -p "/builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library/Rhtslib/testdata/tabix" cd "htslib-1.15.1/test" && (cp *.sam *.bam *.vcf *.bcf *.cram *.fa *.fa.fai *.gff *.bed "/builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library/Rhtslib/testdata" 2>/dev/null || true) && cd tabix && (cp *.sam *.bam *.vcf *.bcf *.cram *.fa *.fa.fai *.gff *.bed "/builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library/Rhtslib/testdata/tabix" 2>/dev/null || true) installing to /builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library/Rhtslib/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘Rhtslib’ finding HTML links ... done Rhtslib-package html pkgconfig html ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Rhtslib) + test -d Rhtslib/src + cd Rhtslib/src + rm -f R_init_Rhtslib.o Rhtslib.so + rm -f /builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library/R.css + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.4.1-4.fc43 --unique-debug-suffix -2.4.1-4.fc43.x86_64 --unique-debug-src-base R-Rhtslib-2.4.1-4.fc43.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/R-Rhtslib-2.4.1-build/Rhtslib find-debuginfo: starting Extracting debug info from 2 files DWARF-compressing 2 files sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-Rhtslib-2.4.1-4.fc43.x86_64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT /builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT/usr/lib64/R/library/Rhtslib/usrlib/libhts.a: replacing with normalized version Scanned 38 directories and 266 files, processed 10 inodes, 1 modified (1 replaced + 0 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/R-Rhtslib-2.4.1-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.sfbrn4 + umask 022 + cd /builddir/build/BUILD/R-Rhtslib-2.4.1-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Rhtslib + RPM_EC=0 ++ jobs -p + exit 0 Processing files: R-Rhtslib-2.4.1-4.fc43.x86_64 Provides: R(Rhtslib) = 2.4.1 R-Rhtslib = 2.4.1-4.fc43 R-Rhtslib(x86-64) = 2.4.1-4.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: R(ABI) = 4.4 R-core libR.so()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.2)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libcurl.so.4()(64bit) liblzma.so.5()(64bit) liblzma.so.5(XZ_5.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Suggests: R(BiocStyle) R(knitr) R(rmarkdown) Processing files: R-Rhtslib-devel-2.4.1-4.fc43.x86_64 Provides: R-Rhtslib-devel = 2.4.1-4.fc43 R-Rhtslib-devel(x86-64) = 2.4.1-4.fc43 R-Rhtslib-static = 2.4.1-4.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-Rhtslib-debugsource-2.4.1-4.fc43.x86_64 Provides: R-Rhtslib-debugsource = 2.4.1-4.fc43 R-Rhtslib-debugsource(x86-64) = 2.4.1-4.fc43 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-Rhtslib-debuginfo-2.4.1-4.fc43.x86_64 Provides: R-Rhtslib-debuginfo = 2.4.1-4.fc43 R-Rhtslib-debuginfo(x86-64) = 2.4.1-4.fc43 debuginfo(build-id) = 2696c7455f7632d6a4bf21c1cf7ed2c1a65e0349 debuginfo(build-id) = e3b4c9b2b6edd878303e81d7617fa6aeb4d88c24 libhts.so-2.4.1-4.fc43.x86_64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-Rhtslib-debugsource(x86-64) = 2.4.1-4.fc43 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/R-Rhtslib-2.4.1-build/BUILDROOT Wrote: /builddir/build/RPMS/R-Rhtslib-debuginfo-2.4.1-4.fc43.x86_64.rpm Wrote: /builddir/build/RPMS/R-Rhtslib-2.4.1-4.fc43.x86_64.rpm Wrote: /builddir/build/RPMS/R-Rhtslib-debugsource-2.4.1-4.fc43.x86_64.rpm Wrote: /builddir/build/RPMS/R-Rhtslib-devel-2.4.1-4.fc43.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.NeY6dY + umask 022 + cd /builddir/build/BUILD/R-Rhtslib-2.4.1-build + test -d /builddir/build/BUILD/R-Rhtslib-2.4.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/R-Rhtslib-2.4.1-build + rm -rf /builddir/build/BUILD/R-Rhtslib-2.4.1-build + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild R-Rhtslib-2.4.1-4.fc43.src.rpm Finish: build phase for R-Rhtslib-2.4.1-4.fc43.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-x86_64-1740738340.675980/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/R-Rhtslib-2.4.1-4.fc43.src.rpm) Config(child) 2 minutes 2 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-Rhtslib-debugsource", "epoch": null, "version": "2.4.1", "release": "4.fc43", "arch": "x86_64" }, { "name": "R-Rhtslib", "epoch": null, "version": "2.4.1", "release": "4.fc43", "arch": "src" }, { "name": "R-Rhtslib-devel", "epoch": null, "version": "2.4.1", "release": "4.fc43", "arch": "x86_64" }, { "name": "R-Rhtslib", "epoch": null, "version": "2.4.1", "release": "4.fc43", "arch": "x86_64" }, { "name": "R-Rhtslib-debuginfo", "epoch": null, "version": "2.4.1", "release": "4.fc43", "arch": "x86_64" } ] } RPMResults finished