Warning: Permanently added '3.89.142.188' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6849216-fedora-rawhide-aarch64 --chroot fedora-rawhide-aarch64 Version: 0.70 PID: 6173 Logging PID: 6174 Task: {'appstream': False, 'background': True, 'build_id': 6849216, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'e91562bfd5854ca45093c793911c780443c492f9', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/pybind11-2.10.2/libsonata', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'libsonata', 'package_version': '0.1.23-4', 'project_dirname': 'pybind11-2.10.2', 'project_name': 'pybind11-2.10.2', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/pybind11-2.10.2/fedora-rawhide-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/pybind11-2.10.2--https://src.fedoraproject.org/user/music', 'source_json': {}, 'source_type': None, 'submitter': 'https://src.fedoraproject.org/user/music', 'tags': [], 'task_id': '6849216-fedora-rawhide-aarch64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/pybind11-2.10.2/libsonata /var/lib/copr-rpmbuild/workspace/workdir-xu9ybx6w/libsonata --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/pybind11-2.10.2/libsonata', '/var/lib/copr-rpmbuild/workspace/workdir-xu9ybx6w/libsonata', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-xu9ybx6w/libsonata'... Running: git checkout e91562bfd5854ca45093c793911c780443c492f9 -- cmd: ['git', 'checkout', 'e91562bfd5854ca45093c793911c780443c492f9', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-xu9ybx6w/libsonata rc: 0 stdout: stderr: Note: switching to 'e91562bfd5854ca45093c793911c780443c492f9'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at e91562b automatic import of libsonata Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-xu9ybx6w/libsonata rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading libsonata-0.1.23.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o libsonata-0.1.23.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/pybind11-2.10.2/libsonata/libsonata-0.1.23.tar.gz/md5/4a2f0917fd2882f707e2b2e92e40f85b/libsonata-0.1.23.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 624k 100 624k 0 0 15.9M 0 --:--:-- --:--:-- --:--:-- 16.0M INFO: Reading stdout from command: md5sum libsonata-0.1.23.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-xu9ybx6w/libsonata/libsonata.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-xu9ybx6w/libsonata --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1704214220.255177 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.3 starting (python version = 3.11.3, NVR = mock-5.3-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-xu9ybx6w/libsonata/libsonata.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-xu9ybx6w/libsonata --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1704214220.255177 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-xu9ybx6w/libsonata/libsonata.spec) Config(fedora-rawhide-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 5.3 INFO: Mock Version: 5.3 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1704214220.255177/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1704214220.255177/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/3841bfed833a4d97cb3eaccdb03ed7ffbf4ca2806e7f9e34242b559424100472/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/3841bfed833a4d97cb3eaccdb03ed7ffbf4ca2806e7f9e34242b559424100472/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 1.5 MB/s | 104 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 118 MB/s | 71 MB 00:00 fedora 49 MB/s | 70 MB 00:01 Package python3-dnf-4.18.2-1.fc40.noarch is already installed. Dependencies resolved. ========================================================================================================================== Package Arch Version Repository Size ========================================================================================================================== Installing: python3-dnf-plugins-core noarch 4.4.4-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 302 k Installing dependencies: dbus-libs aarch64 1:1.14.10-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 156 k python3-dateutil noarch 1:2.8.2-11.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 345 k python3-dbus aarch64 1.3.2-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 146 k python3-distro noarch 1.8.0-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 44 k python3-six noarch 1.16.0-12.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 41 k python3-systemd aarch64 235-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 101 k Transaction Summary ========================================================================================================================== Install 7 Packages Total download size: 1.1 M Installed size: 4.7 M Downloading Packages: (1/7): python3-dateutil-2.8.2-11.fc40.noarch.rp 11 MB/s | 345 kB 00:00 (2/7): python3-dbus-1.3.2-4.fc39.aarch64.rpm 4.5 MB/s | 146 kB 00:00 (3/7): dbus-libs-1.14.10-1.fc40.aarch64.rpm 4.6 MB/s | 156 kB 00:00 (4/7): python3-distro-1.8.0-6.fc39.noarch.rpm 14 MB/s | 44 kB 00:00 (5/7): python3-dnf-plugins-core-4.4.4-1.fc40.no 57 MB/s | 302 kB 00:00 (6/7): python3-six-1.16.0-12.fc39.noarch.rpm 9.7 MB/s | 41 kB 00:00 (7/7): python3-systemd-235-5.fc39.aarch64.rpm 23 MB/s | 101 kB 00:00 -------------------------------------------------------------------------------- Total 27 MB/s | 1.1 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python3-systemd-235-5.fc39.aarch64 1/7 Installing : python3-six-1.16.0-12.fc39.noarch 2/7 Installing : python3-dateutil-1:2.8.2-11.fc40.noarch 3/7 Installing : python3-distro-1.8.0-6.fc39.noarch 4/7 Installing : dbus-libs-1:1.14.10-1.fc40.aarch64 5/7 Installing : python3-dbus-1.3.2-4.fc39.aarch64 6/7 Installing : python3-dnf-plugins-core-4.4.4-1.fc40.noarch 7/7 Running scriptlet: python3-dnf-plugins-core-4.4.4-1.fc40.noarch 7/7 Installed: dbus-libs-1:1.14.10-1.fc40.aarch64 python3-dateutil-1:2.8.2-11.fc40.noarch python3-dbus-1.3.2-4.fc39.aarch64 python3-distro-1.8.0-6.fc39.noarch python3-dnf-plugins-core-4.4.4-1.fc40.noarch python3-six-1.16.0-12.fc39.noarch python3-systemd-235-5.fc39.aarch64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1704214220.255177/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1-2.fc40.aarch64 rpm-sequoia-1.5.0-2.fc40.aarch64 python3-dnf-4.18.2-1.fc40.noarch python3-dnf-plugins-core-4.4.4-1.fc40.noarch yum-4.18.2-1.fc40.noarch Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 2.4 MB/s | 104 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 252 MB/s | 71 MB 00:00 fedora 49 MB/s | 70 MB 00:01 Dependencies resolved. ========================================================================================================================================= Package Arch Version Repository Size 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 89 k grep aarch64 3.11-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 285 k gzip aarch64 1.12-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 158 k info aarch64 7.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 183 k patch aarch64 2.7.6-22.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 123 k redhat-rpm-config noarch 272-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 74 k rpm-build aarch64 4.19.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 72 k sed aarch64 4.8-14.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 295 k shadow-utils aarch64 2:4.14.0-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M tar aarch64 2:1.35-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 845 k unzip aarch64 6.0-62.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 183 k util-linux aarch64 2.39.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M which aarch64 2.21-40.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 42 k xz aarch64 5.4.5-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 531 k Installing dependencies: alternatives aarch64 1.25-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38 k ansible-srpm-macros noarch 1-11.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21 k audit-libs aarch64 3.1.2-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 118 k authselect aarch64 1.4.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144 k authselect-libs aarch64 1.4.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 235 k basesystem noarch 11-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.2 k binutils aarch64 2.41-17.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.7 M binutils-gold aarch64 2.41-17.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 946 k bzip2-libs aarch64 1.0.8-16.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 43 k ca-certificates noarch 2023.2.62_v7.0.401-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 863 k coreutils-common aarch64 9.4-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 M cracklib aarch64 2.9.11-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 83 k crypto-policies noarch 20231204-1.git1e3a2e4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 69 k curl aarch64 8.5.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 368 k cyrus-sasl-lib aarch64 2.1.28-11.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 781 k debugedit aarch64 5.0-12.fc40 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 681 k util-linux-core aarch64 2.39.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 491 k xxhash-libs aarch64 0.8.2-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35 k xz-libs aarch64 5.4.5-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 107 k zig-srpm-macros noarch 1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.0 k zip aarch64 3.0-39.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 262 k zlib-ng-compat aarch64 2.1.5-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 66 k zstd aarch64 1.5.5-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 446 k Installing Groups: Buildsystem building group Transaction Summary ========================================================================================================================================= Install 153 Packages Total download size: 51 M Installed size: 303 M Downloading Packages: (1/153): ansible-srpm-macros-1-11.fc39.noarch.r 865 kB/s | 21 kB 00:00 (2/153): audit-libs-3.1.2-5.fc40.aarch64.rpm 3.8 MB/s | 118 kB 00:00 (3/153): alternatives-1.25-1.fc39.aarch64.rpm 1.1 MB/s | 38 kB 00:00 (4/153): authselect-1.4.3-1.fc40.aarch64.rpm 23 MB/s | 144 kB 00:00 (5/153): basesystem-11-18.fc39.noarch.rpm 2.1 MB/s | 7.2 kB 00:00 (6/153): authselect-libs-1.4.3-1.fc40.aarch64.r 30 MB/s | 235 kB 00:00 (7/153): bash-5.2.21-2.fc40.aarch64.rpm 93 MB/s | 1.8 MB 00:00 (8/153): binutils-gold-2.41-17.fc40.aarch64.rpm 56 MB/s | 946 kB 00:00 (9/153): bzip2-1.0.8-16.fc39.aarch64.rpm 7.1 MB/s | 52 kB 00:00 (10/153): bzip2-libs-1.0.8-16.fc39.aarch64.rpm 4.6 MB/s | 43 kB 00:00 (11/153): ca-certificates-2023.2.62_v7.0.401-4. 67 MB/s | 863 kB 00:00 (12/153): binutils-2.41-17.fc40.aarch64.rpm 137 MB/s | 6.7 MB 00:00 (13/153): coreutils-9.4-1.fc40.aarch64.rpm 57 MB/s | 1.1 MB 00:00 (14/153): cpio-2.14-5.fc40.aarch64.rpm 43 MB/s | 270 kB 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Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-6.fc39.aarch64 1/1 Preparing : 1/1 Installing : libgcc-13.2.1-6.fc40.aarch64 1/153 Running scriptlet: libgcc-13.2.1-6.fc40.aarch64 1/153 Installing : crypto-policies-20231204-1.git1e3a2e4.fc40.noarc 2/153 Running scriptlet: crypto-policies-20231204-1.git1e3a2e4.fc40.noarc 2/153 Installing : fedora-release-identity-basic-40-0.20.noarch 3/153 Installing : fedora-repos-rawhide-40-0.2.noarch 4/153 Installing : fedora-gpg-keys-40-0.2.noarch 5/153 Installing : fedora-repos-40-0.2.noarch 6/153 Installing : fedora-release-common-40-0.20.noarch 7/153 Installing : fedora-release-40-0.20.noarch 8/153 Installing : setup-2.14.5-1.fc40.noarch 9/153 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.5-1.fc40.noarch 9/153 Installing : filesystem-3.18-6.fc39.aarch64 10/153 Installing : basesystem-11-18.fc39.noarch 11/153 Installing : rust-srpm-macros-25.2-2.fc40.noarch 12/153 Installing : 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redhat-rpm-config-272-1.fc40.noarch 148/153 Installing : rpm-build-4.19.1-2.fc40.aarch64 149/153 Installing : pyproject-srpm-macros-1.11.0-1.fc40.noarch 150/153 Installing : util-linux-2.39.3-1.fc40.aarch64 151/153 Installing : which-2.21-40.fc39.aarch64 152/153 Installing : info-7.1-1.fc40.aarch64 153/153 Running scriptlet: filesystem-3.18-6.fc39.aarch64 153/153 Running scriptlet: ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch 153/153 Running scriptlet: authselect-libs-1.4.3-1.fc40.aarch64 153/153 Running scriptlet: rpm-4.19.1-2.fc40.aarch64 153/153 Running scriptlet: info-7.1-1.fc40.aarch64 153/153 Installed: alternatives-1.25-1.fc39.aarch64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-5.fc40.aarch64 authselect-1.4.3-1.fc40.aarch64 authselect-libs-1.4.3-1.fc40.aarch64 basesystem-11-18.fc39.noarch bash-5.2.21-2.fc40.aarch64 binutils-2.41-17.fc40.aarch64 binutils-gold-2.41-17.fc40.aarch64 bzip2-1.0.8-16.fc39.aarch64 bzip2-libs-1.0.8-16.fc39.aarch64 ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch coreutils-9.4-1.fc40.aarch64 coreutils-common-9.4-1.fc40.aarch64 cpio-2.14-5.fc40.aarch64 cracklib-2.9.11-2.fc39.aarch64 crypto-policies-20231204-1.git1e3a2e4.fc40.noarch curl-8.5.0-1.fc40.aarch64 cyrus-sasl-lib-2.1.28-11.fc39.aarch64 debugedit-5.0-12.fc40.aarch64 diffutils-3.10-3.fc39.aarch64 dwz-0.15-3.fc39.aarch64 ed-1.19-4.fc39.aarch64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.190-4.fc40.aarch64 elfutils-debuginfod-client-0.190-4.fc40.aarch64 elfutils-default-yama-scope-0.190-4.fc40.noarch elfutils-libelf-0.190-4.fc40.aarch64 elfutils-libs-0.190-4.fc40.aarch64 fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.20.noarch fedora-release-common-40-0.20.noarch fedora-release-identity-basic-40-0.20.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-1.fc40.aarch64 file-libs-5.45-1.fc40.aarch64 filesystem-3.18-6.fc39.aarch64 findutils-1:4.9.0-6.fc40.aarch64 fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.2.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.aarch64 gdb-minimal-14.1-1.fc40.aarch64 gdbm-1:1.23-4.fc39.aarch64 gdbm-libs-1:1.23-4.fc39.aarch64 ghc-srpm-macros-1.6.1-3.fc40.noarch glibc-2.38.9000-29.fc40.aarch64 glibc-common-2.38.9000-29.fc40.aarch64 glibc-gconv-extra-2.38.9000-29.fc40.aarch64 glibc-minimal-langpack-2.38.9000-29.fc40.aarch64 gmp-1:6.2.1-5.fc39.aarch64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.1-1.fc40.noarch grep-3.11-5.fc40.aarch64 gzip-1.12-6.fc39.aarch64 info-7.1-1.fc40.aarch64 jansson-2.13.1-7.fc39.aarch64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc40.aarch64 krb5-libs-1.21.2-2.fc40.aarch64 libacl-2.3.1-11.fc40.aarch64 libarchive-3.7.2-1.fc40.aarch64 libattr-2.5.1-9.fc40.aarch64 libblkid-2.39.3-1.fc40.aarch64 libbrotli-1.1.0-1.fc40.aarch64 libcap-2.69-1.fc40.aarch64 libcap-ng-0.8.4-1.fc40.aarch64 libcom_err-1.47.0-2.fc39.aarch64 libcurl-8.5.0-1.fc40.aarch64 libeconf-0.5.2-1.fc40.aarch64 libevent-2.1.12-9.fc39.aarch64 libfdisk-2.39.3-1.fc40.aarch64 libffi-3.4.4-4.fc39.aarch64 libgcc-13.2.1-6.fc40.aarch64 libgomp-13.2.1-6.fc40.aarch64 libidn2-2.3.4-3.fc39.aarch64 libmount-2.39.3-1.fc40.aarch64 libnghttp2-1.58.0-1.fc40.aarch64 libnsl2-2.0.0-6.fc39.aarch64 libpkgconf-1.9.5-2.fc39.aarch64 libpsl-0.21.2-4.fc39.aarch64 libpwquality-1.4.5-6.fc39.aarch64 libselinux-3.6-1.fc40.aarch64 libsemanage-3.6-1.fc40.aarch64 libsepol-3.6-1.fc40.aarch64 libsigsegv-2.14-5.fc39.aarch64 libsmartcols-2.39.3-1.fc40.aarch64 libssh-0.10.6-2.fc40.aarch64 libssh-config-0.10.6-2.fc40.noarch libstdc++-13.2.1-6.fc40.aarch64 libtasn1-4.19.0-3.fc39.aarch64 libtirpc-1.3.4-0.fc40.aarch64 libunistring-1.1-5.fc40.aarch64 libutempter-1.2.1-10.fc39.aarch64 libuuid-2.39.3-1.fc40.aarch64 libverto-0.3.2-6.fc39.aarch64 libxcrypt-4.4.36-3.fc40.aarch64 libxml2-2.12.3-1.fc40.aarch64 libzstd-1.5.5-4.fc39.aarch64 lua-libs-5.4.6-3.fc39.aarch64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.aarch64 mpfr-4.2.1-1.fc40.aarch64 ncurses-base-6.4-8.20231001.fc40.noarch ncurses-libs-6.4-8.20231001.fc40.aarch64 ocaml-srpm-macros-9-1.fc40.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.aarch64 openssl-libs-1:3.1.4-1.fc40.aarch64 p11-kit-0.25.3-1.fc40.aarch64 p11-kit-trust-0.25.3-1.fc40.aarch64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-9.fc40.aarch64 pam-libs-1.5.3-9.fc40.aarch64 patch-2.7.6-22.fc39.aarch64 pcre2-10.42-2.fc40.aarch64 pcre2-syntax-10.42-2.fc40.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.aarch64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.aarch64 popt-1.19-3.fc39.aarch64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.11.0-1.fc40.noarch python-srpm-macros-3.12-5.fc40.noarch qt5-srpm-macros-5.15.11-1.fc40.noarch qt6-srpm-macros-6.6.1-2.fc40.noarch readline-8.2-4.fc39.aarch64 redhat-rpm-config-272-1.fc40.noarch rpm-4.19.1-2.fc40.aarch64 rpm-build-4.19.1-2.fc40.aarch64 rpm-build-libs-4.19.1-2.fc40.aarch64 rpm-libs-4.19.1-2.fc40.aarch64 rpm-sequoia-1.5.0-2.fc40.aarch64 rust-srpm-macros-25.2-2.fc40.noarch sed-4.8-14.fc39.aarch64 setup-2.14.5-1.fc40.noarch shadow-utils-2:4.14.0-2.fc40.aarch64 sqlite-libs-3.44.2-1.fc40.aarch64 systemd-libs-255.1-1.fc40.aarch64 tar-2:1.35-2.fc40.aarch64 unzip-6.0-62.fc39.aarch64 util-linux-2.39.3-1.fc40.aarch64 util-linux-core-2.39.3-1.fc40.aarch64 which-2.21-40.fc39.aarch64 xxhash-libs-0.8.2-1.fc39.aarch64 xz-5.4.5-1.fc40.aarch64 xz-libs-5.4.5-1.fc40.aarch64 zig-srpm-macros-1-1.fc40.noarch zip-3.0-39.fc40.aarch64 zlib-ng-compat-2.1.5-1.fc40.aarch64 zstd-1.5.5-4.fc39.aarch64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.25-1.fc39.aarch64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-5.fc40.aarch64 authselect-1.4.3-1.fc40.aarch64 authselect-libs-1.4.3-1.fc40.aarch64 basesystem-11-18.fc39.noarch bash-5.2.21-2.fc40.aarch64 binutils-2.41-17.fc40.aarch64 binutils-gold-2.41-17.fc40.aarch64 bzip2-1.0.8-16.fc39.aarch64 bzip2-libs-1.0.8-16.fc39.aarch64 ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch coreutils-9.4-1.fc40.aarch64 coreutils-common-9.4-1.fc40.aarch64 cpio-2.14-5.fc40.aarch64 cracklib-2.9.11-2.fc39.aarch64 crypto-policies-20231204-1.git1e3a2e4.fc40.noarch curl-8.5.0-1.fc40.aarch64 cyrus-sasl-lib-2.1.28-11.fc39.aarch64 debugedit-5.0-12.fc40.aarch64 diffutils-3.10-3.fc39.aarch64 dwz-0.15-3.fc39.aarch64 ed-1.19-4.fc39.aarch64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.190-4.fc40.aarch64 elfutils-debuginfod-client-0.190-4.fc40.aarch64 elfutils-default-yama-scope-0.190-4.fc40.noarch elfutils-libelf-0.190-4.fc40.aarch64 elfutils-libs-0.190-4.fc40.aarch64 fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.20.noarch fedora-release-common-40-0.20.noarch fedora-release-identity-basic-40-0.20.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-1.fc40.aarch64 file-libs-5.45-1.fc40.aarch64 filesystem-3.18-6.fc39.aarch64 findutils-4.9.0-6.fc40.aarch64 fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.2.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.aarch64 gdb-minimal-14.1-1.fc40.aarch64 gdbm-1.23-4.fc39.aarch64 gdbm-libs-1.23-4.fc39.aarch64 ghc-srpm-macros-1.6.1-3.fc40.noarch glibc-2.38.9000-29.fc40.aarch64 glibc-common-2.38.9000-29.fc40.aarch64 glibc-gconv-extra-2.38.9000-29.fc40.aarch64 glibc-minimal-langpack-2.38.9000-29.fc40.aarch64 gmp-6.2.1-5.fc39.aarch64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.1-1.fc40.noarch grep-3.11-5.fc40.aarch64 gzip-1.12-6.fc39.aarch64 info-7.1-1.fc40.aarch64 jansson-2.13.1-7.fc39.aarch64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc40.aarch64 krb5-libs-1.21.2-2.fc40.aarch64 libacl-2.3.1-11.fc40.aarch64 libarchive-3.7.2-1.fc40.aarch64 libattr-2.5.1-9.fc40.aarch64 libblkid-2.39.3-1.fc40.aarch64 libbrotli-1.1.0-1.fc40.aarch64 libcap-2.69-1.fc40.aarch64 libcap-ng-0.8.4-1.fc40.aarch64 libcom_err-1.47.0-2.fc39.aarch64 libcurl-8.5.0-1.fc40.aarch64 libeconf-0.5.2-1.fc40.aarch64 libevent-2.1.12-9.fc39.aarch64 libfdisk-2.39.3-1.fc40.aarch64 libffi-3.4.4-4.fc39.aarch64 libgcc-13.2.1-6.fc40.aarch64 libgomp-13.2.1-6.fc40.aarch64 libidn2-2.3.4-3.fc39.aarch64 libmount-2.39.3-1.fc40.aarch64 libnghttp2-1.58.0-1.fc40.aarch64 libnsl2-2.0.0-6.fc39.aarch64 libpkgconf-1.9.5-2.fc39.aarch64 libpsl-0.21.2-4.fc39.aarch64 libpwquality-1.4.5-6.fc39.aarch64 libselinux-3.6-1.fc40.aarch64 libsemanage-3.6-1.fc40.aarch64 libsepol-3.6-1.fc40.aarch64 libsigsegv-2.14-5.fc39.aarch64 libsmartcols-2.39.3-1.fc40.aarch64 libssh-0.10.6-2.fc40.aarch64 libssh-config-0.10.6-2.fc40.noarch libstdc++-13.2.1-6.fc40.aarch64 libtasn1-4.19.0-3.fc39.aarch64 libtirpc-1.3.4-0.fc40.aarch64 libunistring-1.1-5.fc40.aarch64 libutempter-1.2.1-10.fc39.aarch64 libuuid-2.39.3-1.fc40.aarch64 libverto-0.3.2-6.fc39.aarch64 libxcrypt-4.4.36-3.fc40.aarch64 libxml2-2.12.3-1.fc40.aarch64 libzstd-1.5.5-4.fc39.aarch64 lua-libs-5.4.6-3.fc39.aarch64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.aarch64 mpfr-4.2.1-1.fc40.aarch64 ncurses-base-6.4-8.20231001.fc40.noarch ncurses-libs-6.4-8.20231001.fc40.aarch64 ocaml-srpm-macros-9-1.fc40.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.aarch64 openssl-libs-3.1.4-1.fc40.aarch64 p11-kit-0.25.3-1.fc40.aarch64 p11-kit-trust-0.25.3-1.fc40.aarch64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-9.fc40.aarch64 pam-libs-1.5.3-9.fc40.aarch64 patch-2.7.6-22.fc39.aarch64 pcre2-10.42-2.fc40.aarch64 pcre2-syntax-10.42-2.fc40.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.aarch64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.aarch64 popt-1.19-3.fc39.aarch64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.11.0-1.fc40.noarch python-srpm-macros-3.12-5.fc40.noarch qt5-srpm-macros-5.15.11-1.fc40.noarch qt6-srpm-macros-6.6.1-2.fc40.noarch readline-8.2-4.fc39.aarch64 redhat-rpm-config-272-1.fc40.noarch rpm-4.19.1-2.fc40.aarch64 rpm-build-4.19.1-2.fc40.aarch64 rpm-build-libs-4.19.1-2.fc40.aarch64 rpm-libs-4.19.1-2.fc40.aarch64 rpm-sequoia-1.5.0-2.fc40.aarch64 rust-srpm-macros-25.2-2.fc40.noarch sed-4.8-14.fc39.aarch64 setup-2.14.5-1.fc40.noarch shadow-utils-4.14.0-2.fc40.aarch64 sqlite-libs-3.44.2-1.fc40.aarch64 systemd-libs-255.1-1.fc40.aarch64 tar-1.35-2.fc40.aarch64 unzip-6.0-62.fc39.aarch64 util-linux-2.39.3-1.fc40.aarch64 util-linux-core-2.39.3-1.fc40.aarch64 which-2.21-40.fc39.aarch64 xxhash-libs-0.8.2-1.fc39.aarch64 xz-5.4.5-1.fc40.aarch64 xz-libs-5.4.5-1.fc40.aarch64 zig-srpm-macros-1-1.fc40.noarch zip-3.0-39.fc40.aarch64 zlib-ng-compat-2.1.5-1.fc40.aarch64 zstd-1.5.5-4.fc39.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1704153600 Wrote: /builddir/build/SRPMS/libsonata-0.1.23-4.fc40.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1704214220.255177/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-aarch64-1704214220.255177/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-aarch64-1704214220.255177/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-xu9ybx6w/libsonata/libsonata.spec) Config(child) 1 minutes 35 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/libsonata-0.1.23-4.fc40.src.rpm) Config(fedora-rawhide-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1704214220.255177/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1704214220.255177/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1704214220.255177/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1-2.fc40.aarch64 rpm-sequoia-1.5.0-2.fc40.aarch64 python3-dnf-4.18.2-1.fc40.noarch python3-dnf-plugins-core-4.4.4-1.fc40.noarch yum-4.18.2-1.fc40.noarch Finish: chroot init Start: build phase for libsonata-0.1.23-4.fc40.src.rpm Start: build setup for libsonata-0.1.23-4.fc40.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1704153600 Wrote: /builddir/build/SRPMS/libsonata-0.1.23-4.fc40.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 39 kB/s | 1.8 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 158 kB/s | 3.8 kB 00:00 fedora 47 kB/s | 12 kB 00:00 Dependencies resolved. ================================================================================================================================== Package Arch Version Repository Size ================================================================================================================================== Installing: boost-devel aarch64 1.81.0-10.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 12 M catch2-devel aarch64 2.13.10-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 197 k cmake aarch64 3.27.7-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.4 M fmt-devel aarch64 10.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 125 k gcc-c++ aarch64 13.2.1-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 12 M git-core aarch64 2.43.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.6 M hdf5-devel aarch64 1.12.1-15.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.3 M highfive-devel aarch64 2.8.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 77 k json-devel aarch64 3.11.2-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 155 k pybind11-devel aarch64 2.11.1-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 168 k python3-devel aarch64 3.12.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 274 k python3-h5py aarch64 3.10.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M python3-pip noarch 23.2.1-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.9 M python3-pybind11 aarch64 2.11.1-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 187 k python3-pytest noarch 7.4.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 M python3-setuptools noarch 68.2.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 M python3-setuptools_scm noarch 8.0.4-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 98 k python3-wheel noarch 1:0.41.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 148 k Installing dependencies: annobin-docs noarch 12.34-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 91 k annobin-plugin-gcc aarch64 12.34-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 959 k boost aarch64 1.81.0-10.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14 k boost-atomic aarch64 1.81.0-10.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 19 k boost-chrono aarch64 1.81.0-10.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 25 k boost-container aarch64 1.81.0-10.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 39 k boost-context aarch64 1.81.0-10.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 17 k boost-contract aarch64 1.81.0-10.fc40 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k Transaction Summary ================================================================================================================================== Install 112 Packages Total download size: 155 M Installed size: 708 M Downloading Packages: (1/112): annobin-docs-12.34-1.fc40.noarch.rpm 3.2 MB/s | 91 kB 00:00 (2/112): boost-1.81.0-10.fc40.aarch64.rpm 488 kB/s | 14 kB 00:00 (3/112): boost-atomic-1.81.0-10.fc40.aarch64.rp 5.1 MB/s | 19 kB 00:00 (4/112): boost-chrono-1.81.0-10.fc40.aarch64.rp 7.1 MB/s | 25 kB 00:00 (5/112): boost-container-1.81.0-10.fc40.aarch64 11 MB/s | 39 kB 00:00 (6/112): boost-context-1.81.0-10.fc40.aarch64.r 4.8 MB/s | 17 kB 00:00 (7/112): annobin-plugin-gcc-12.34-1.fc40.aarch6 23 MB/s | 959 kB 00:00 (8/112): boost-coroutine-1.81.0-10.fc40.aarch64 4.4 MB/s | 20 kB 00:00 (9/112): boost-contract-1.81.0-10.fc40.aarch64. 7.4 MB/s | 43 kB 00:00 (10/112): boost-date-time-1.81.0-10.fc40.aarch6 3.9 MB/s | 16 kB 00:00 (11/112): boost-fiber-1.81.0-10.fc40.aarch64.rp 7.8 MB/s | 41 kB 00:00 (12/112): boost-filesystem-1.81.0-10.fc40.aarch 15 MB/s | 63 kB 00:00 (13/112): boost-iostreams-1.81.0-10.fc40.aarch6 10 MB/s | 40 kB 00:00 (14/112): boost-graph-1.81.0-10.fc40.aarch64.rp 25 MB/s | 143 kB 00:00 (15/112): boost-json-1.81.0-10.fc40.aarch64.rpm 21 MB/s | 106 kB 00:00 (16/112): boost-locale-1.81.0-10.fc40.aarch64.r 27 MB/s | 205 kB 00:00 (17/112): boost-log-1.81.0-10.fc40.aarch64.rpm 50 MB/s | 458 kB 00:00 (18/112): boost-math-1.81.0-10.fc40.aarch64.rpm 35 MB/s | 259 kB 00:00 (19/112): boost-numpy3-1.81.0-10.fc40.aarch64.r 6.5 MB/s | 29 kB 00:00 (20/112): boost-nowide-1.81.0-10.fc40.aarch64.r 3.0 MB/s | 21 kB 00:00 (21/112): boost-program-options-1.81.0-10.fc40. 21 MB/s | 105 kB 00:00 (22/112): boost-python3-1.81.0-10.fc40.aarch64. 20 MB/s | 89 kB 00:00 (23/112): boost-random-1.81.0-10.fc40.aarch64.r 6.5 MB/s | 24 kB 00:00 (24/112): boost-regex-1.81.0-10.fc40.aarch64.rp 21 MB/s | 107 kB 00:00 (25/112): boost-stacktrace-1.81.0-10.fc40.aarch 7.8 MB/s | 30 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zlib-ng-compat-devel-2.1.5-1.fc40.aa 8.0 MB/s | 34 kB 00:00 -------------------------------------------------------------------------------- Total 250 MB/s | 155 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : boost-system-1.81.0-10.fc40.aarch64 1/112 Installing : cmake-filesystem-3.27.7-1.fc40.aarch64 2/112 Installing : boost-chrono-1.81.0-10.fc40.aarch64 3/112 Installing : boost-thread-1.81.0-10.fc40.aarch64 4/112 Installing : libicu-73.2-3.fc40.aarch64 5/112 Installing : libmpc-1.3.1-3.fc39.aarch64 6/112 Installing : libgfortran-13.2.1-6.fc40.aarch64 7/112 Installing : boost-regex-1.81.0-10.fc40.aarch64 8/112 Installing : python-rpm-macros-3.12-5.fc40.noarch 9/112 Installing : expat-2.5.0-3.fc39.aarch64 10/112 Installing : boost-context-1.81.0-10.fc40.aarch64 11/112 Installing : boost-atomic-1.81.0-10.fc40.aarch64 12/112 Installing : boost-filesystem-1.81.0-10.fc40.aarch64 13/112 Installing : python3-rpm-macros-3.12-5.fc40.noarch 14/112 Installing : libstdc++-devel-13.2.1-6.fc40.aarch64 15/112 Installing : libaec-1.0.6-5.fc39.aarch64 16/112 Installing : hdf5-1.12.1-15.fc40.aarch64 17/112 Installing : boost-date-time-1.81.0-10.fc40.aarch64 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Installing : python-pip-wheel-23.2.1-1.fc39.noarch 37/112 Installing : openssh-9.3p1-13.fc40.1.aarch64 38/112 Installing : openblas-0.3.25-1.fc40.aarch64 39/112 Installing : openblas-openmp-0.3.25-1.fc40.aarch64 40/112 Installing : flexiblas-netlib-3.3.1-5.fc39.aarch64 41/112 Installing : flexiblas-openblas-openmp-3.3.1-5.fc39.aarch64 42/112 Installing : flexiblas-3.3.1-5.fc39.aarch64 43/112 Installing : mpdecimal-2.5.1-7.fc39.aarch64 44/112 Installing : libuv-1:1.47.0-3.fc40.aarch64 45/112 Installing : libubsan-13.2.1-6.fc40.aarch64 46/112 Installing : libtool-ltdl-2.4.7-8.fc40.aarch64 47/112 Installing : liblzf-3.6-26.fc39.aarch64 48/112 Installing : libedit-3.1-48.20230828cvs.fc40.aarch64 49/112 Installing : libcbor-0.10.2-3.fc40.aarch64 50/112 Installing : libfido2-1.14.0-1.fc40.aarch64 51/112 Installing : openssh-clients-9.3p1-13.fc40.1.aarch64 52/112 Running scriptlet: openssh-clients-9.3p1-13.fc40.1.aarch64 52/112 Installing : libb2-0.98.1-9.fc39.aarch64 53/112 Installing : python3-3.12.1-2.fc40.aarch64 54/112 Installing : python3-libs-3.12.1-2.fc40.aarch64 55/112 Installing : python3-packaging-23.2-2.fc40.noarch 56/112 Installing : boost-python3-1.81.0-10.fc40.aarch64 57/112 Installing : cmake-rpm-macros-3.27.7-1.fc40.noarch 58/112 Installing : python3-numpy-1:1.26.2-1.fc40.aarch64 59/112 Installing : boost-numpy3-1.81.0-10.fc40.aarch64 60/112 Installing : python3-setuptools-68.2.2-1.fc40.noarch 61/112 Installing : python3-pip-23.2.1-1.fc39.noarch 62/112 Installing : python3-rpm-generators-14-8.fc40.noarch 63/112 Installing : python3-cached_property-1.5.2-11.fc39.noarch 64/112 Installing : python3-iniconfig-1.1.1-14.fc39.noarch 65/112 Installing : python3-pluggy-1.3.0-1.fc40.noarch 66/112 Installing : python3-six-1.16.0-12.fc39.noarch 67/112 Installing : python3-typing-extensions-4.9.0-1.fc40.noarch 68/112 Installing : libatomic-13.2.1-6.fc40.aarch64 69/112 Installing : libasan-13.2.1-6.fc40.aarch64 70/112 Installing : less-643-1.fc40.aarch64 71/112 Installing : kernel-headers-6.7.0-0.rc8.61.fc40.aarch64 72/112 Installing : libxcrypt-devel-4.4.36-3.fc40.aarch64 73/112 Installing : glibc-devel-2.38.9000-29.fc40.aarch64 74/112 Installing : jsoncpp-1.9.5-5.fc39.aarch64 75/112 Installing : gc-8.2.2-4.fc39.aarch64 76/112 Installing : guile22-2.2.7-9.fc39.aarch64 77/112 Installing : make-1:4.4.1-2.fc39.aarch64 78/112 Installing : gcc-13.2.1-6.fc40.aarch64 79/112 Running scriptlet: gcc-13.2.1-6.fc40.aarch64 79/112 Installing : gcc-gfortran-13.2.1-6.fc40.aarch64 80/112 Installing : fmt-10.1.1-1.fc40.aarch64 81/112 Installing : emacs-filesystem-1:29.1-14.fc40.noarch 82/112 Installing : cmake-data-3.27.7-1.fc40.noarch 83/112 Installing : cmake-3.27.7-1.fc40.aarch64 84/112 Installing : pybind11-devel-2.11.1-1.fc39.aarch64 85/112 Installing : boost-test-1.81.0-10.fc40.aarch64 86/112 Installing : boost-stacktrace-1.81.0-10.fc40.aarch64 87/112 Installing : boost-serialization-1.81.0-10.fc40.aarch64 88/112 Installing : boost-random-1.81.0-10.fc40.aarch64 89/112 Installing : boost-program-options-1.81.0-10.fc40.aarch64 90/112 Installing : boost-nowide-1.81.0-10.fc40.aarch64 91/112 Installing : boost-math-1.81.0-10.fc40.aarch64 92/112 Installing : boost-iostreams-1.81.0-10.fc40.aarch64 93/112 Installing : boost-contract-1.81.0-10.fc40.aarch64 94/112 Installing : boost-1.81.0-10.fc40.aarch64 95/112 Installing : annobin-docs-12.34-1.fc40.noarch 96/112 Installing : annobin-plugin-gcc-12.34-1.fc40.aarch64 97/112 Running scriptlet: annobin-plugin-gcc-12.34-1.fc40.aarch64 97/112 Installing : boost-devel-1.81.0-10.fc40.aarch64 98/112 Installing : python3-pybind11-2.11.1-1.fc39.aarch64 99/112 Installing : fmt-devel-10.1.1-1.fc40.aarch64 100/112 Installing : hdf5-devel-1.12.1-15.fc40.aarch64 101/112 Installing : gcc-c++-13.2.1-6.fc40.aarch64 102/112 Installing : gcc-plugin-annobin-13.2.1-6.fc40.aarch64 103/112 Running scriptlet: gcc-plugin-annobin-13.2.1-6.fc40.aarch64 103/112 Installing : git-core-2.43.0-1.fc40.aarch64 104/112 Installing : python3-setuptools_scm-8.0.4-1.fc40.noarch 105/112 Installing : python3-h5py-3.10.0-1.fc40.aarch64 106/112 Installing : python3-pytest-7.4.3-1.fc40.noarch 107/112 Installing : python3-devel-3.12.1-2.fc40.aarch64 108/112 Installing : python3-wheel-1:0.41.2-1.fc40.noarch 109/112 Installing : json-devel-3.11.2-5.fc40.aarch64 110/112 Installing : catch2-devel-2.13.10-2.fc39.aarch64 111/112 Installing : highfive-devel-2.8.0-1.fc40.aarch64 112/112 Running scriptlet: highfive-devel-2.8.0-1.fc40.aarch64 112/112 Installed: annobin-docs-12.34-1.fc40.noarch annobin-plugin-gcc-12.34-1.fc40.aarch64 boost-1.81.0-10.fc40.aarch64 boost-atomic-1.81.0-10.fc40.aarch64 boost-chrono-1.81.0-10.fc40.aarch64 boost-container-1.81.0-10.fc40.aarch64 boost-context-1.81.0-10.fc40.aarch64 boost-contract-1.81.0-10.fc40.aarch64 boost-coroutine-1.81.0-10.fc40.aarch64 boost-date-time-1.81.0-10.fc40.aarch64 boost-devel-1.81.0-10.fc40.aarch64 boost-fiber-1.81.0-10.fc40.aarch64 boost-filesystem-1.81.0-10.fc40.aarch64 boost-graph-1.81.0-10.fc40.aarch64 boost-iostreams-1.81.0-10.fc40.aarch64 boost-json-1.81.0-10.fc40.aarch64 boost-locale-1.81.0-10.fc40.aarch64 boost-log-1.81.0-10.fc40.aarch64 boost-math-1.81.0-10.fc40.aarch64 boost-nowide-1.81.0-10.fc40.aarch64 boost-numpy3-1.81.0-10.fc40.aarch64 boost-program-options-1.81.0-10.fc40.aarch64 boost-python3-1.81.0-10.fc40.aarch64 boost-random-1.81.0-10.fc40.aarch64 boost-regex-1.81.0-10.fc40.aarch64 boost-serialization-1.81.0-10.fc40.aarch64 boost-stacktrace-1.81.0-10.fc40.aarch64 boost-system-1.81.0-10.fc40.aarch64 boost-test-1.81.0-10.fc40.aarch64 boost-thread-1.81.0-10.fc40.aarch64 boost-timer-1.81.0-10.fc40.aarch64 boost-type_erasure-1.81.0-10.fc40.aarch64 boost-wave-1.81.0-10.fc40.aarch64 catch2-devel-2.13.10-2.fc39.aarch64 cmake-3.27.7-1.fc40.aarch64 cmake-data-3.27.7-1.fc40.noarch cmake-filesystem-3.27.7-1.fc40.aarch64 cmake-rpm-macros-3.27.7-1.fc40.noarch cpp-13.2.1-6.fc40.aarch64 emacs-filesystem-1:29.1-14.fc40.noarch expat-2.5.0-3.fc39.aarch64 flexiblas-3.3.1-5.fc39.aarch64 flexiblas-netlib-3.3.1-5.fc39.aarch64 flexiblas-openblas-openmp-3.3.1-5.fc39.aarch64 fmt-10.1.1-1.fc40.aarch64 fmt-devel-10.1.1-1.fc40.aarch64 gc-8.2.2-4.fc39.aarch64 gcc-13.2.1-6.fc40.aarch64 gcc-c++-13.2.1-6.fc40.aarch64 gcc-gfortran-13.2.1-6.fc40.aarch64 gcc-plugin-annobin-13.2.1-6.fc40.aarch64 git-core-2.43.0-1.fc40.aarch64 glibc-devel-2.38.9000-29.fc40.aarch64 guile22-2.2.7-9.fc39.aarch64 hdf5-1.12.1-15.fc40.aarch64 hdf5-devel-1.12.1-15.fc40.aarch64 highfive-devel-2.8.0-1.fc40.aarch64 json-devel-3.11.2-5.fc40.aarch64 jsoncpp-1.9.5-5.fc39.aarch64 kernel-headers-6.7.0-0.rc8.61.fc40.aarch64 less-643-1.fc40.aarch64 libaec-1.0.6-5.fc39.aarch64 libaec-devel-1.0.6-5.fc39.aarch64 libasan-13.2.1-6.fc40.aarch64 libatomic-13.2.1-6.fc40.aarch64 libb2-0.98.1-9.fc39.aarch64 libcbor-0.10.2-3.fc40.aarch64 libedit-3.1-48.20230828cvs.fc40.aarch64 libfido2-1.14.0-1.fc40.aarch64 libgfortran-13.2.1-6.fc40.aarch64 libicu-73.2-3.fc40.aarch64 libicu-devel-73.2-3.fc40.aarch64 liblzf-3.6-26.fc39.aarch64 libmpc-1.3.1-3.fc39.aarch64 libstdc++-devel-13.2.1-6.fc40.aarch64 libtool-ltdl-2.4.7-8.fc40.aarch64 libubsan-13.2.1-6.fc40.aarch64 libuv-1:1.47.0-3.fc40.aarch64 libxcrypt-devel-4.4.36-3.fc40.aarch64 make-1:4.4.1-2.fc39.aarch64 mpdecimal-2.5.1-7.fc39.aarch64 openblas-0.3.25-1.fc40.aarch64 openblas-openmp-0.3.25-1.fc40.aarch64 openssh-9.3p1-13.fc40.1.aarch64 openssh-clients-9.3p1-13.fc40.1.aarch64 pybind11-devel-2.11.1-1.fc39.aarch64 pyproject-rpm-macros-1.11.0-1.fc40.noarch python-pip-wheel-23.2.1-1.fc39.noarch python-rpm-macros-3.12-5.fc40.noarch python3-3.12.1-2.fc40.aarch64 python3-cached_property-1.5.2-11.fc39.noarch python3-devel-3.12.1-2.fc40.aarch64 python3-h5py-3.10.0-1.fc40.aarch64 python3-iniconfig-1.1.1-14.fc39.noarch python3-libs-3.12.1-2.fc40.aarch64 python3-numpy-1:1.26.2-1.fc40.aarch64 python3-packaging-23.2-2.fc40.noarch python3-pip-23.2.1-1.fc39.noarch python3-pluggy-1.3.0-1.fc40.noarch python3-pybind11-2.11.1-1.fc39.aarch64 python3-pytest-7.4.3-1.fc40.noarch python3-rpm-generators-14-8.fc40.noarch python3-rpm-macros-3.12-5.fc40.noarch python3-setuptools-68.2.2-1.fc40.noarch python3-setuptools_scm-8.0.4-1.fc40.noarch python3-six-1.16.0-12.fc39.noarch python3-typing-extensions-4.9.0-1.fc40.noarch python3-wheel-1:0.41.2-1.fc40.noarch rhash-1.4.3-3.fc39.aarch64 tzdata-2023c-5.fc40.noarch vim-filesystem-2:9.0.2190-1.fc40.noarch zlib-ng-compat-devel-2.1.5-1.fc40.aarch64 Complete! Finish: build setup for libsonata-0.1.23-4.fc40.src.rpm Start: rpmbuild libsonata-0.1.23-4.fc40.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1704153600 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.54ow5Q + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf libsonata-0.1.23 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/libsonata-0.1.23.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd libsonata-0.1.23 + rm -rf /builddir/build/BUILD/libsonata-0.1.23-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/libsonata-0.1.23-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/git init -q + /usr/bin/git config user.name rpm-build + /usr/bin/git config user.email '' + /usr/bin/git config gc.auto 0 + /usr/bin/git add --force . + /usr/bin/git commit -q --allow-empty -a --author 'rpm-build ' -m 'libsonata-0.1.23 base' + /usr/bin/git checkout --track -b rpm-build Switched to a new branch 'rpm-build' branch 'rpm-build' set up to track 'master'. + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0001-include-catch-cmake.patch + /usr/bin/git apply --index --reject - Checking patch tests/CMakeLists.txt... Applied patch tests/CMakeLists.txt cleanly. + /usr/bin/git commit -q -m 0001-include-catch-cmake.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0002-use-cpp-17-filesystem.patch + /usr/bin/git apply --index --reject - Checking patch src/config.cpp... Applied patch src/config.cpp cleanly. + /usr/bin/git commit -q -m 0002-use-cpp-17-filesystem.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0003-Remove-pybind-redeclarations.patch + /usr/bin/git apply --index --reject - Checking patch python/bindings.cpp... Applied patch python/bindings.cpp cleanly. + /usr/bin/git commit -q -m 0003-Remove-pybind-redeclarations.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0004-disable-python-ext-build.patch + /usr/bin/git apply --index --reject - Checking patch setup.py... Applied patch setup.py cleanly. + /usr/bin/git commit -q -m 0004-disable-python-ext-build.patch --author 'rpm-build ' + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/0005-set-libdir.patch + /usr/bin/git apply --index --reject - Checking patch CMakeLists.txt... Applied patch CMakeLists.txt cleanly. + /usr/bin/git commit -q -m 0005-set-libdir.patch --author 'rpm-build ' + rm -rf libsonata.egg-info + rm -rf extlib/Catch2 extlib/Highfive extlib/fmt extlib/nlohmann + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.ntuujj + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsonata-0.1.23 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DSONATA_PYTHON=ON -DEXTLIB_FROM_SUBMODULES=OFF -DSONATA_VERSION=0.1.23 -DSONATA_TESTS=ON -DSONATA_CXX_WARNINGS=OFF -DCMAKE_CXX_STANDARD=17 CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at CMakeLists.txt:2 (cmake_policy): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 13.2.1 -- The CXX compiler identification is GNU 13.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- HIGHFIVE 2.8.0: (Re)Detecting Highfive dependencies (HIGHFIVE_USE_INSTALL_DEPS=NO) -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.12.1") -- Found Boost: /usr/include (found version "1.81.0") found components: system serialization -- Found nlohmann_json: /usr/share/cmake/nlohmann_json/nlohmann_jsonConfig.cmake (found version "3.11.2") CMake Warning (dev) at /usr/share/cmake/pybind11/FindPythonLibsNew.cmake:98 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/share/cmake/pybind11/pybind11Tools.cmake:50 (find_package) /usr/share/cmake/pybind11/pybind11Common.cmake:188 (include) /usr/share/cmake/pybind11/pybind11Config.cmake:250 (include) python/CMakeLists.txt:6 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.12.1", minimum required is "3.6") -- Found PythonLibs: /usr/lib64/libpython3.12.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.11.1") -- Warning: this does not have an effect - use NO_SYSTEM_FROM_IMPORTED if using imported targets -- Configuring done (1.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build + /usr/bin/cmake --build redhat-linux-build -j4 --verbose Change Dir: '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j4 /usr/bin/cmake -S/builddir/build/BUILD/libsonata-0.1.23 -B/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/CMakeFiles /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build//CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/sonata_shared.dir/build.make CMakeFiles/sonata_shared.dir/depend /usr/bin/gmake -f CMakeFiles/sonata_static.dir/build.make CMakeFiles/sonata_static.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/CMakeFiles/sonata_shared.dir/DependInfo.cmake "--color=" gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/CMakeFiles/sonata_static.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' /usr/bin/gmake -f CMakeFiles/sonata_static.dir/build.make CMakeFiles/sonata_static.dir/build /usr/bin/gmake -f CMakeFiles/sonata_shared.dir/build.make CMakeFiles/sonata_shared.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' [ 11%] Building CXX object CMakeFiles/sonata_shared.dir/src/common.cpp.o [ 11%] Building CXX object CMakeFiles/sonata_shared.dir/src/config.cpp.o [ 11%] Building CXX object CMakeFiles/sonata_static.dir/src/config.cpp.o [ 11%] Building CXX object CMakeFiles/sonata_static.dir/src/common.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/config.cpp.o -MF CMakeFiles/sonata_static.dir/src/config.cpp.o.d -o CMakeFiles/sonata_static.dir/src/config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/config.cpp /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/common.cpp.o -MF CMakeFiles/sonata_shared.dir/src/common.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/common.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/common.cpp /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/config.cpp.o -MF CMakeFiles/sonata_shared.dir/src/config.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/config.cpp /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/common.cpp.o -MF CMakeFiles/sonata_static.dir/src/common.cpp.o.d -o CMakeFiles/sonata_static.dir/src/common.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/common.cpp [ 14%] Building CXX object CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o -MF CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/edge_index.cpp [ 17%] Building CXX object CMakeFiles/sonata_static.dir/src/edge_index.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/edge_index.cpp.o -MF CMakeFiles/sonata_static.dir/src/edge_index.cpp.o.d -o CMakeFiles/sonata_static.dir/src/edge_index.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/edge_index.cpp [ 20%] Building CXX object CMakeFiles/sonata_static.dir/src/edges.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/edges.cpp.o -MF CMakeFiles/sonata_static.dir/src/edges.cpp.o.d -o CMakeFiles/sonata_static.dir/src/edges.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/edges.cpp [ 23%] Building CXX object CMakeFiles/sonata_shared.dir/src/edges.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/edges.cpp.o -MF CMakeFiles/sonata_shared.dir/src/edges.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/edges.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/edges.cpp [ 26%] Building CXX object CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o -MF CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o.d -o CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/hdf5_mutex.cpp [ 29%] Building CXX object CMakeFiles/sonata_static.dir/src/node_sets.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/node_sets.cpp.o -MF CMakeFiles/sonata_static.dir/src/node_sets.cpp.o.d -o CMakeFiles/sonata_static.dir/src/node_sets.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp: In function ‘bbp::sonata::detail::NodeSetRulePtr bbp::sonata::detail::_dispatch_node(const std::string&, const json&)’: /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:491:21: warning: possibly dangling reference to a temporary [-Wdangling-reference] 491 | const auto& key = definition.begin().key(); | ^~~ /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:491:49: note: the temporary was destroyed at the end of the full expression ‘nlohmann::json_abi_v3_11_2::basic_json::begin() const [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_2::adl_serializer; BinaryType = std::vector; const_iterator = nlohmann::json_abi_v3_11_2::detail::iter_impl >]().nlohmann::json_abi_v3_11_2::detail::iter_impl >::key()’ 491 | const auto& key = definition.begin().key(); | ~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:492:21: warning: possibly dangling reference to a temporary [-Wdangling-reference] 492 | const auto& value = definition.begin().value(); | ^~~~~ /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:492:53: note: the temporary was destroyed at the end of the full expression ‘nlohmann::json_abi_v3_11_2::basic_json::begin() const [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_2::adl_serializer; BinaryType = std::vector; const_iterator = nlohmann::json_abi_v3_11_2::detail::iter_impl >]().nlohmann::json_abi_v3_11_2::detail::iter_impl >::value()’ 492 | const auto& value = definition.begin().value(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ [ 32%] Building CXX object CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o -MF CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/hdf5_mutex.cpp [ 35%] Building CXX object CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o -MF CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp: In function ‘bbp::sonata::detail::NodeSetRulePtr bbp::sonata::detail::_dispatch_node(const std::string&, const json&)’: /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:491:21: warning: possibly dangling reference to a temporary [-Wdangling-reference] 491 | const auto& key = definition.begin().key(); | ^~~ /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:491:49: note: the temporary was destroyed at the end of the full expression ‘nlohmann::json_abi_v3_11_2::basic_json::begin() const [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_2::adl_serializer; BinaryType = std::vector; const_iterator = nlohmann::json_abi_v3_11_2::detail::iter_impl >]().nlohmann::json_abi_v3_11_2::detail::iter_impl >::key()’ 491 | const auto& key = definition.begin().key(); | ~~~~~~~~~~~~~~~~~~~~~~^~ /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:492:21: warning: possibly dangling reference to a temporary [-Wdangling-reference] 492 | const auto& value = definition.begin().value(); | ^~~~~ /builddir/build/BUILD/libsonata-0.1.23/src/node_sets.cpp:492:53: note: the temporary was destroyed at the end of the full expression ‘nlohmann::json_abi_v3_11_2::basic_json::begin() const [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long int; NumberUnsignedType = long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_2::adl_serializer; BinaryType = std::vector; const_iterator = nlohmann::json_abi_v3_11_2::detail::iter_impl >]().nlohmann::json_abi_v3_11_2::detail::iter_impl >::value()’ 492 | const auto& value = definition.begin().value(); | ~~~~~~~~~~~~~~~~~~~~~~~~^~ [ 38%] Building CXX object CMakeFiles/sonata_static.dir/src/nodes.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/nodes.cpp.o -MF CMakeFiles/sonata_static.dir/src/nodes.cpp.o.d -o CMakeFiles/sonata_static.dir/src/nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/nodes.cpp [ 41%] Building CXX object CMakeFiles/sonata_shared.dir/src/nodes.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/nodes.cpp.o -MF CMakeFiles/sonata_shared.dir/src/nodes.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/nodes.cpp [ 44%] Building CXX object CMakeFiles/sonata_static.dir/src/population.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/population.cpp.o -MF CMakeFiles/sonata_static.dir/src/population.cpp.o.d -o CMakeFiles/sonata_static.dir/src/population.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/population.cpp [ 47%] Building CXX object CMakeFiles/sonata_shared.dir/src/population.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/population.cpp.o -MF CMakeFiles/sonata_shared.dir/src/population.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/population.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/population.cpp [ 50%] Building CXX object CMakeFiles/sonata_static.dir/src/report_reader.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/report_reader.cpp.o -MF CMakeFiles/sonata_static.dir/src/report_reader.cpp.o.d -o CMakeFiles/sonata_static.dir/src/report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp [ 52%] Building CXX object CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o -MF CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/report_reader.cpp [ 55%] Building CXX object CMakeFiles/sonata_static.dir/src/utils.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/utils.cpp.o -MF CMakeFiles/sonata_static.dir/src/utils.cpp.o.d -o CMakeFiles/sonata_static.dir/src/utils.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/utils.cpp [ 58%] Building CXX object CMakeFiles/sonata_static.dir/src/version.cpp.o /usr/bin/g++ -DFMT_HEADER_ONLY=1 -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_static.dir/src/version.cpp.o -MF CMakeFiles/sonata_static.dir/src/version.cpp.o.d -o CMakeFiles/sonata_static.dir/src/version.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/src/version.cpp [ 61%] Building CXX object CMakeFiles/sonata_shared.dir/src/utils.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/utils.cpp.o -MF CMakeFiles/sonata_shared.dir/src/utils.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/utils.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/src/utils.cpp [ 64%] Building CXX object CMakeFiles/sonata_shared.dir/src/version.cpp.o /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -DSONATA_DLL_EXPORTS -Dsonata_shared_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wextra -pedantic -MD -MT CMakeFiles/sonata_shared.dir/src/version.cpp.o -MF CMakeFiles/sonata_shared.dir/src/version.cpp.o.d -o CMakeFiles/sonata_shared.dir/src/version.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/src/version.cpp [ 67%] Linking CXX static library libsonata.a /usr/bin/cmake -P CMakeFiles/sonata_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/sonata_static.dir/link.txt --verbose=1 /usr/bin/ar qc libsonata.a CMakeFiles/sonata_static.dir/src/common.cpp.o CMakeFiles/sonata_static.dir/src/config.cpp.o CMakeFiles/sonata_static.dir/src/edge_index.cpp.o CMakeFiles/sonata_static.dir/src/edges.cpp.o CMakeFiles/sonata_static.dir/src/hdf5_mutex.cpp.o CMakeFiles/sonata_static.dir/src/node_sets.cpp.o CMakeFiles/sonata_static.dir/src/nodes.cpp.o CMakeFiles/sonata_static.dir/src/population.cpp.o CMakeFiles/sonata_static.dir/src/report_reader.cpp.o CMakeFiles/sonata_static.dir/src/utils.cpp.o CMakeFiles/sonata_static.dir/src/version.cpp.o /usr/bin/ranlib libsonata.a gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' [ 67%] Built target sonata_static /usr/bin/gmake -f python/CMakeFiles/sonata_python.dir/build.make python/CMakeFiles/sonata_python.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23/python /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/python /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/python/CMakeFiles/sonata_python.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' /usr/bin/gmake -f python/CMakeFiles/sonata_python.dir/build.make python/CMakeFiles/sonata_python.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' [ 70%] Building CXX object python/CMakeFiles/sonata_python.dir/bindings.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/python && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DFMT_HEADER_ONLY=1 -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -Dsonata_python_EXPORTS -I/builddir/build/BUILD/libsonata-0.1.23/include -isystem /usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -fPIC -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT python/CMakeFiles/sonata_python.dir/bindings.cpp.o -MF CMakeFiles/sonata_python.dir/bindings.cpp.o.d -o CMakeFiles/sonata_python.dir/bindings.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/python/bindings.cpp [ 73%] Linking CXX shared library libsonata.so /usr/bin/cmake -E cmake_link_script CMakeFiles/sonata_shared.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libsonata.so.0.1 -o libsonata.so.0.1.23 CMakeFiles/sonata_shared.dir/src/common.cpp.o CMakeFiles/sonata_shared.dir/src/config.cpp.o CMakeFiles/sonata_shared.dir/src/edge_index.cpp.o CMakeFiles/sonata_shared.dir/src/edges.cpp.o CMakeFiles/sonata_shared.dir/src/hdf5_mutex.cpp.o CMakeFiles/sonata_shared.dir/src/node_sets.cpp.o CMakeFiles/sonata_shared.dir/src/nodes.cpp.o CMakeFiles/sonata_shared.dir/src/population.cpp.o CMakeFiles/sonata_shared.dir/src/report_reader.cpp.o CMakeFiles/sonata_shared.dir/src/utils.cpp.o CMakeFiles/sonata_shared.dir/src/version.cpp.o /usr/lib64/libhdf5.so /builddir/build/BUILD/libsonata-0.1.23/python/bindings.cpp: In lambda function: /builddir/build/BUILD/libsonata-0.1.23/python/bindings.cpp:424:39: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘pybind11::ssize_t’ {aka ‘long int’} [-Wsign-compare] 424 | for (size_t i = 0; i < raw.shape(0); ++i) { | ~~^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/edges.h:13, from /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/config.h:20, from /builddir/build/BUILD/libsonata-0.1.23/python/bindings.cpp:6: /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/population.h: In instantiation of ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = const long int*]’: /builddir/build/BUILD/libsonata-0.1.23/python/bindings.cpp:430:46: required from here /builddir/build/BUILD/libsonata-0.1.23/include/bbp/sonata/population.h:77:15: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘long unsigned int’ [-Wsign-compare] 77 | if (v == range.second) { | ~~^~~~~~~~~~~~~~~ /usr/bin/cmake -E cmake_symlink_library libsonata.so.0.1.23 libsonata.so.0.1 libsonata.so gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' [ 73%] Built target sonata_shared /usr/bin/gmake -f tests/CMakeFiles/unittests.dir/build.make tests/CMakeFiles/unittests.dir/depend gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libsonata-0.1.23 /builddir/build/BUILD/libsonata-0.1.23/tests /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests/CMakeFiles/unittests.dir/DependInfo.cmake "--color=" gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' /usr/bin/gmake -f tests/CMakeFiles/unittests.dir/build.make tests/CMakeFiles/unittests.dir/build gmake[2]: Entering directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' [ 82%] Building CXX object tests/CMakeFiles/unittests.dir/test_edges.cpp.o [ 82%] Building CXX object tests/CMakeFiles/unittests.dir/test_config.cpp.o [ 82%] Building CXX object tests/CMakeFiles/unittests.dir/main.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/main.cpp.o -MF CMakeFiles/unittests.dir/main.cpp.o.d -o CMakeFiles/unittests.dir/main.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/tests/main.cpp cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_config.cpp.o -MF CMakeFiles/unittests.dir/test_config.cpp.o.d -o CMakeFiles/unittests.dir/test_config.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/tests/test_config.cpp cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_edges.cpp.o -MF CMakeFiles/unittests.dir/test_edges.cpp.o.d -o CMakeFiles/unittests.dir/test_edges.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/tests/test_edges.cpp [ 85%] Linking CXX shared module _libsonata.cpython-312-aarch64-linux-gnu.so cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/sonata_python.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -flto -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o _libsonata.cpython-312-aarch64-linux-gnu.so CMakeFiles/sonata_python.dir/bindings.cpp.o ../libsonata.a /usr/lib64/libhdf5.so [ 88%] Building CXX object tests/CMakeFiles/unittests.dir/test_node_sets.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_node_sets.cpp.o -MF CMakeFiles/unittests.dir/test_node_sets.cpp.o.d -o CMakeFiles/unittests.dir/test_node_sets.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/tests/test_node_sets.cpp [ 91%] Building CXX object tests/CMakeFiles/unittests.dir/test_nodes.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_nodes.cpp.o -MF CMakeFiles/unittests.dir/test_nodes.cpp.o.d -o CMakeFiles/unittests.dir/test_nodes.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/tests/test_nodes.cpp [ 94%] Building CXX object tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_report_reader.cpp.o -MF CMakeFiles/unittests.dir/test_report_reader.cpp.o.d -o CMakeFiles/unittests.dir/test_report_reader.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/tests/test_report_reader.cpp In file included from /builddir/build/BUILD/libsonata-0.1.23/tests/test_report_reader.cpp:1: /builddir/build/BUILD/libsonata-0.1.23/tests/test_report_reader.cpp: In function ‘void testTimes(const std::vector&, double, double, int)’: /builddir/build/BUILD/libsonata-0.1.23/tests/test_report_reader.cpp:8:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 8 | REQUIRE(size == vec.size()); | ~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/libsonata-0.1.23/tests/test_report_reader.cpp:9:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 9 | for (int i = 0; i < vec.size(); ++i) { | ~~^~~~~~~~~~~~ [ 97%] Building CXX object tests/CMakeFiles/unittests.dir/test_selection.cpp.o cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/g++ -DBOOST_ALL_NO_LIB -DH5_USE_BOOST -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DSONATA_DLL -I/builddir/build/BUILD/libsonata-0.1.23/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -std=gnu++17 -MD -MT tests/CMakeFiles/unittests.dir/test_selection.cpp.o -MF CMakeFiles/unittests.dir/test_selection.cpp.o.d -o CMakeFiles/unittests.dir/test_selection.cpp.o -c /builddir/build/BUILD/libsonata-0.1.23/tests/test_selection.cpp [100%] Linking CXX executable unittests cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/unittests.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/unittests.dir/main.cpp.o CMakeFiles/unittests.dir/test_config.cpp.o CMakeFiles/unittests.dir/test_edges.cpp.o CMakeFiles/unittests.dir/test_node_sets.cpp.o CMakeFiles/unittests.dir/test_nodes.cpp.o CMakeFiles/unittests.dir/test_report_reader.cpp.o CMakeFiles/unittests.dir/test_selection.cpp.o -o unittests -Wl,-rpath,/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build ../libsonata.so.0.1.23 /usr/lib64/libhdf5.so cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/python && /usr/bin/strip /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/python/_libsonata.cpython-312-aarch64-linux-gnu.so gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' [100%] Built target sonata_python cd /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests && /usr/bin/cmake -D TEST_TARGET=unittests -D TEST_EXECUTABLE=/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests/unittests -D TEST_EXECUTOR= -D TEST_WORKING_DIR=/builddir/build/BUILD/libsonata-0.1.23/tests -D TEST_SPEC= -D TEST_EXTRA_ARGS= -D TEST_PROPERTIES= -D TEST_PREFIX= -D TEST_SUFFIX= -D TEST_LIST=unittests_TESTS -D TEST_REPORTER= -D TEST_OUTPUT_DIR= -D TEST_OUTPUT_PREFIX= -D TEST_OUTPUT_SUFFIX= -D CTEST_FILE=/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/tests/unittests_tests-b12d07c.cmake -P /usr/lib64/cmake/Catch2/CatchAddTests.cmake gmake[2]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' [100%] Built target unittests gmake[1]: Leaving directory '/builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build/CMakeFiles 0 + export SETUPTOOLS_SCM_PRETEND_VERSION=0.1.23 + SETUPTOOLS_SCM_PRETEND_VERSION=0.1.23 + cp -a README.rst redhat-linux-build + cp -a setup.py redhat-linux-build + cp -a pyproject.toml redhat-linux-build + cp -a COPYING.LESSER redhat-linux-build + cp -a MANIFEST.in redhat-linux-build + mkdir -p redhat-linux-build/python/libsonata/ + cp -a python/libsonata/__init__.py redhat-linux-build/python/libsonata + pushd redhat-linux-build ~/build/BUILD/libsonata-0.1.23/redhat-linux-build ~/build/BUILD/libsonata-0.1.23 + mkdir -p /builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/libsonata-0.1.23/pyproject-wheeldir Processing /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) WARNING setuptools_scm._integration.setuptools pyproject.toml does not contain a tool.setuptools_scm section WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' running dist_info creating /builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-15a8vmxe/libsonata.egg-info writing /builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-15a8vmxe/libsonata.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-15a8vmxe/libsonata.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-15a8vmxe/libsonata.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-15a8vmxe/libsonata.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-15a8vmxe/libsonata.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-15a8vmxe/libsonata.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*' under directory 'include' warning: no files found matching 'CMakeLists.txt' warning: no files found matching 'extlib/CMakeLists.txt' warning: no files found matching 'extlib/nlohmann/json.hpp' warning: no files found matching '*' under directory 'extlib/fmt/include' warning: no files found matching '*' under directory 'extlib/fmt/src' warning: no files found matching '*.cmake' under directory 'extlib/fmt/support/cmake' warning: no files found matching 'extlib/fmt/CMakeLists.txt' warning: no files found matching 'extlib/fmt/*.rst' warning: no files found matching '*' under directory 'extlib/HighFive/include' warning: no files found matching 'extlib/HighFive/CMakeLists.txt' warning: no files found matching 'extlib/HighFive/LICENSE' warning: no files found matching 'extlib/filesystem.hpp' warning: no files found matching '*' under directory 'python/pybind11/include' warning: no files found matching '*.cmake' under directory 'python/pybind11/tools' warning: no files found matching 'python/pybind11/CMakeLists.txt' warning: no files found matching 'python/pybind11/LICENSE' adding license file 'COPYING.LESSER' writing manifest file '/builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-15a8vmxe/libsonata.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-modern-metadata-15a8vmxe/libsonata-0.1.23.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: libsonata Building wheel for libsonata (pyproject.toml): started Running command Building wheel for libsonata (pyproject.toml) WARNING setuptools_scm._integration.setuptools pyproject.toml does not contain a tool.setuptools_scm section WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' running bdist_wheel running build running build_py creating build creating build/lib.linux-aarch64-cpython-312 creating build/lib.linux-aarch64-cpython-312/libsonata copying python/libsonata/__init__.py -> build/lib.linux-aarch64-cpython-312/libsonata running build_ext installing to build/bdist.linux-aarch64/wheel running install running install_lib creating build/bdist.linux-aarch64 creating build/bdist.linux-aarch64/wheel creating build/bdist.linux-aarch64/wheel/libsonata copying build/lib.linux-aarch64-cpython-312/libsonata/__init__.py -> build/bdist.linux-aarch64/wheel/libsonata running install_egg_info running egg_info creating python/libsonata.egg-info writing python/libsonata.egg-info/PKG-INFO writing dependency_links to python/libsonata.egg-info/dependency_links.txt writing requirements to python/libsonata.egg-info/requires.txt writing top-level names to python/libsonata.egg-info/top_level.txt writing manifest file 'python/libsonata.egg-info/SOURCES.txt' reading manifest file 'python/libsonata.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*' under directory 'include' warning: no files found matching 'CMakeLists.txt' warning: no files found matching 'extlib/CMakeLists.txt' warning: no files found matching 'extlib/nlohmann/json.hpp' warning: no files found matching '*' under directory 'extlib/fmt/include' warning: no files found matching '*' under directory 'extlib/fmt/src' warning: no files found matching '*.cmake' under directory 'extlib/fmt/support/cmake' warning: no files found matching 'extlib/fmt/CMakeLists.txt' warning: no files found matching 'extlib/fmt/*.rst' warning: no files found matching '*' under directory 'extlib/HighFive/include' warning: no files found matching 'extlib/HighFive/CMakeLists.txt' warning: no files found matching 'extlib/HighFive/LICENSE' warning: no files found matching 'extlib/filesystem.hpp' warning: no files found matching '*' under directory 'python/pybind11/include' warning: no files found matching '*.cmake' under directory 'python/pybind11/tools' warning: no files found matching 'python/pybind11/CMakeLists.txt' warning: no files found matching 'python/pybind11/LICENSE' adding license file 'COPYING.LESSER' writing manifest file 'python/libsonata.egg-info/SOURCES.txt' Copying python/libsonata.egg-info to build/bdist.linux-aarch64/wheel/libsonata-0.1.23-py3.12.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/libsonata-0.1.23.dist-info/WHEEL creating '/builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir/pip-wheel-lb7lxthe/.tmp-di1yy01b/libsonata-0.1.23-cp312-cp312-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'libsonata/__init__.py' adding 'libsonata-0.1.23.dist-info/COPYING.LESSER' adding 'libsonata-0.1.23.dist-info/METADATA' adding 'libsonata-0.1.23.dist-info/WHEEL' adding 'libsonata-0.1.23.dist-info/top_level.txt' adding 'libsonata-0.1.23.dist-info/RECORD' removing build/bdist.linux-aarch64/wheel Building wheel for libsonata (pyproject.toml): finished with status 'done' Created wheel for libsonata: filename=libsonata-0.1.23-cp312-cp312-linux_aarch64.whl size=8520 sha256=4acfcf3596b347114b9236fd31c8a8f3460d679738a7fbad416e29a2b255f9f8 Stored in directory: /builddir/.cache/pip/wheels/a1/69/45/84665eb6941ba852c46a3b363d91189334ac3fc336fc2813bf Successfully built libsonata + popd + pushd tests/data ~/build/BUILD/libsonata-0.1.23 ~/build/BUILD/libsonata-0.1.23/tests/data ~/build/BUILD/libsonata-0.1.23 + /usr/bin/python3 generate.py + popd ~/build/BUILD/libsonata-0.1.23 + mkdir -p redhat-linux-build/tests + cp -a tests/data redhat-linux-build/tests + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.wBJctK + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64 ++ dirname /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsonata-0.1.23 + DESTDIR=/builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64 + /usr/bin/cmake --install redhat-linux-build -- Install configuration: "" -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/lib64/libsonata.so.0.1.23 -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/lib64/libsonata.so.0.1 -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/lib64/libsonata.so -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/lib64/libsonata.a -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/include/bbp -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/include/bbp/sonata -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/include/bbp/sonata/variant.hpp -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/include/bbp/sonata/report_reader.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/include/bbp/sonata/population.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/include/bbp/sonata/optional.hpp -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/include/bbp/sonata/nodes.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/include/bbp/sonata/node_sets.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/include/bbp/sonata/edges.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/include/bbp/sonata/config.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/include/bbp/sonata/common.h -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/share/sonata/CMake/sonata-config.cmake -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/share/sonata/CMake/sonata-targets.cmake -- Installing: /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/share/sonata/CMake/sonata-targets-noconfig.cmake + rm -rf /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64//usr/lib64/libsonata.a + install -p -m 0655 -D -t /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64//usr/lib64/python3.12/site-packages/libsonata/ redhat-linux-build/python/_libsonata.cpython-312-aarch64-linux-gnu.so + export SETUPTOOLS_SCM_PRETEND_VERSION=0.1.23 + SETUPTOOLS_SCM_PRETEND_VERSION=0.1.23 + pushd redhat-linux-build ~/build/BUILD/libsonata-0.1.23/redhat-linux-build ~/build/BUILD/libsonata-0.1.23 ++ ls /builddir/build/BUILD/libsonata-0.1.23/pyproject-wheeldir/libsonata-0.1.23-cp312-cp312-linux_aarch64.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=libsonata==0.1.23 + '[' -z libsonata==0.1.23 ']' + TMPDIR=/builddir/build/BUILD/libsonata-0.1.23/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/libsonata-0.1.23/pyproject-wheeldir libsonata==0.1.23 Using pip 23.2.1 from /usr/lib/python3.12/site-packages/pip (python 3.12) Looking in links: /builddir/build/BUILD/libsonata-0.1.23/pyproject-wheeldir Processing /builddir/build/BUILD/libsonata-0.1.23/pyproject-wheeldir/libsonata-0.1.23-cp312-cp312-linux_aarch64.whl Installing collected packages: libsonata Successfully installed libsonata-0.1.23 + '[' -d /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/bin ']' + rm -f /builddir/build/BUILD/libsonata-0.1.23-4.fc40.aarch64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/lib/python3.12/site-packages ']' + '[' /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/lib64/python3.12/site-packages '!=' /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/lib/python3.12/site-packages ']' + '[' -d /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/lib64/python3.12/site-packages ']' + site_dirs+=("/usr/lib64/python3.12/site-packages") + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64$site_dir/*.dist-info + echo '%ghost /usr/lib64/python3.12/site-packages/libsonata-0.1.23.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/lib64/python3.12/site-packages/libsonata-0.1.23.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64 --record /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/lib64/python3.12/site-packages/libsonata-0.1.23.dist-info/RECORD --output /builddir/build/BUILD/libsonata-0.1.23-4.fc40.aarch64-pyproject-record + rm -fv /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/lib64/python3.12/site-packages/libsonata-0.1.23.dist-info/RECORD removed '/builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/lib64/python3.12/site-packages/libsonata-0.1.23.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/lib64/python3.12/site-packages/libsonata-0.1.23.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/lib64/python3.12/site-packages/libsonata-0.1.23.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/libsonata-0.1.23-4.fc40.aarch64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_PERCENTAGES_COUNT=2 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/libsonata-0.1.23-4.fc40.aarch64-pyproject-files --output-modules /builddir/build/BUILD/libsonata-0.1.23-4.fc40.aarch64-pyproject-modules --buildroot /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64 --sitelib /usr/lib/python3.12/site-packages --sitearch /usr/lib64/python3.12/site-packages --python-version 3.12 --pyproject-record /builddir/build/BUILD/libsonata-0.1.23-4.fc40.aarch64-pyproject-record --prefix /usr -l libsonata + popd ~/build/BUILD/libsonata-0.1.23 + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 0.1.23-4.fc40 --unique-debug-suffix -0.1.23-4.fc40.aarch64 --unique-debug-src-base libsonata-0.1.23-4.fc40.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/libsonata-0.1.23 find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/libsonata-0.1.23-4.fc40.aarch64 1082 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/lib64/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.SjCIhS + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libsonata-0.1.23 + /usr/bin/ctest --test-dir redhat-linux-build --output-on-failure --force-new-ctest-process -j4 tests Internal ctest changing into directory: /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build Test project /builddir/build/BUILD/libsonata-0.1.23/redhat-linux-build Start 1: Selection Start 2: SpikeReader Start 3: SomaReportReader limits Start 4: SomaReportReader 1/30 Test #1: Selection ....................................... Passed 0.01 sec Start 5: ElementReportReader limits 2/30 Test #2: SpikeReader ..................................... Passed 0.01 sec Start 6: ElementReportReader 3/30 Test #3: SomaReportReader limits ......................... Passed 0.01 sec Start 7: NodePopulation 4/30 Test #4: SomaReportReader ................................ Passed 0.01 sec Start 8: NodePopulationMove 5/30 Test #5: ElementReportReader limits ...................... Passed 0.01 sec Start 9: NodePopulationSelectAll 6/30 Test #6: ElementReportReader ............................. Passed 0.01 sec Start 10: NodePopulationmatchAttributeValues 7/30 Test #7: NodePopulation .................................. Passed 0.01 sec Start 11: NodePopulationmatchAttributeValues - int8_t 8/30 Test #8: NodePopulationMove .............................. Passed 0.01 sec Start 12: NodePopulationmatchAttributeValues - uint8_t 9/30 Test #9: NodePopulationSelectAll ......................... Passed 0.01 sec Start 13: NodePopulationmatchAttributeValues - int16_t 10/30 Test #10: NodePopulationmatchAttributeValues .............. Passed 0.01 sec Start 14: NodePopulationmatchAttributeValues - uint16_t 11/30 Test #11: NodePopulationmatchAttributeValues - int8_t ..... Passed 0.01 sec Start 15: NodePopulationmatchAttributeValues - int32_t 12/30 Test #12: NodePopulationmatchAttributeValues - uint8_t .... Passed 0.01 sec Start 16: NodePopulationmatchAttributeValues - uint32_t 13/30 Test #13: NodePopulationmatchAttributeValues - int16_t .... Passed 0.01 sec Start 17: NodePopulationmatchAttributeValues - int64_t 14/30 Test #14: NodePopulationmatchAttributeValues - uint16_t ... Passed 0.01 sec Start 18: NodePopulationmatchAttributeValues - uint64_t 15/30 Test #15: NodePopulationmatchAttributeValues - int32_t .... Passed 0.01 sec Start 19: NodeSetParse 16/30 Test #17: NodePopulationmatchAttributeValues - int64_t .... Passed 0.01 sec Start 20: NodeSetBasic 17/30 Test #16: NodePopulationmatchAttributeValues - uint32_t ... Passed 0.01 sec Start 21: NodeSetCompound 18/30 Test #18: NodePopulationmatchAttributeValues - uint64_t ... Passed 0.01 sec Start 22: NodeSet 19/30 Test #19: NodeSetParse .................................... Passed 0.01 sec Start 23: EdgePopulation 20/30 Test #22: NodeSet ......................................... Passed 0.01 sec Start 24: EdgePopulationSelectAll 21/30 Test #20: NodeSetBasic .................................... Passed 0.01 sec Start 25: EdgePopulation::writeIndices 22/30 Test #21: NodeSetCompound ................................. Passed 0.01 sec Start 26: EdgeStorage 23/30 Test #24: EdgePopulationSelectAll ......................... Passed 0.01 sec Start 27: CircuitConfig 24/30 Test #23: EdgePopulation .................................. Passed 0.01 sec Start 28: SimulationConfig 25/30 Test #25: EdgePopulation::writeIndices .................... Passed 0.01 sec Start 29: SONATA 26/30 Test #26: EdgeStorage ..................................... Passed 0.01 sec Start 30: unittests 27/30 Test #27: CircuitConfig ................................... Passed 0.01 sec 28/30 Test #29: SONATA .......................................... Passed 0.00 sec 29/30 Test #28: SimulationConfig ................................ Passed 0.01 sec 30/30 Test #30: unittests ....................................... Passed 0.03 sec 100% tests passed, 0 tests failed out of 30 Total Test time (real) = 0.11 sec + pushd python/tests ~/build/BUILD/libsonata-0.1.23/python/tests ~/build/BUILD/libsonata-0.1.23 + export PYTHONPATH=/builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64//usr/lib64/python3.12/site-packages/ + PYTHONPATH=/builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64//usr/lib64/python3.12/site-packages/ + /usr/bin/python3 -m unittest -v test_astrocyte_properties (test_config.TestCircuitConfig.test_astrocyte_properties) ... ok test_basic (test_config.TestCircuitConfig.test_basic) ... ok test_biophysical_properties_raises (test_config.TestCircuitConfig.test_biophysical_properties_raises) ... ok test_duplicate_population (test_config.TestCircuitConfig.test_duplicate_population) ... ok test_endfeet_properties (test_config.TestCircuitConfig.test_endfeet_properties) ... ok test_expanded_json (test_config.TestCircuitConfig.test_expanded_json) ... ok test_get_population_properties (test_config.TestCircuitConfig.test_get_population_properties) ... ok test_partial (test_config.TestCircuitConfig.test_partial) ... ok test_shadowing_morphs (test_config.TestCircuitConfig.test_shadowing_morphs) ... ok test_spatial_directories (test_config.TestCircuitConfig.test_spatial_directories) ... ok test_vasculature_properties (test_config.TestCircuitConfig.test_vasculature_properties) ... ok test_basic (test_config.TestSimulationConfig.test_basic) ... ok test_empty_connection_overrides (test_config.TestSimulationConfig.test_empty_connection_overrides) ... ok test_expanded_json (test_config.TestSimulationConfig.test_expanded_json) ... ok test_run (test_config.TestSimulationConfig.test_run) ... ok test_simulation_config_failures (test_config.TestSimulationConfig.test_simulation_config_failures) ... ok test_BasicScalarAnded (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarAnded) ... ok test_BasicScalarEnum (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarEnum) ... ok test_BasicScalarInt (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarInt) ... ok test_BasicScalarNodeId (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarNodeId) ... ok test_BasicScalarPopulation (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarPopulation) ... ok test_BasicScalarString (test_nodesets.TestNodePopulationNodeSet.test_BasicScalarString) ... ok test_NodeSetCompound (test_nodesets.TestNodePopulationNodeSet.test_NodeSetCompound) ... ok test_NodeSetEmptyArray (test_nodesets.TestNodePopulationNodeSet.test_NodeSetEmptyArray) ... ok test_NodeSet_toJSON (test_nodesets.TestNodePopulationNodeSet.test_NodeSet_toJSON) ... ok test_library_datatype (test_nodesets.TestNodePopulationNodeSet.test_library_datatype) ... ok test_BasicScalarFailFloat (test_nodesets.TestNodeSetFailure.test_BasicScalarFailFloat) ... ok test_BasicScalarFailNegativeNodeIds (test_nodesets.TestNodeSetFailure.test_BasicScalarFailNegativeNodeIds) ... ok test_BasicScalarFailPopulation (test_nodesets.TestNodeSetFailure.test_BasicScalarFailPopulation) ... ok test_CorrectStructure (test_nodesets.TestNodeSetFailure.test_CorrectStructure) ... ok test_FailCompoundWithInt (test_nodesets.TestNodeSetFailure.test_FailCompoundWithInt) ... ok test_FaileRecursiveCompound (test_nodesets.TestNodeSetFailure.test_FaileRecursiveCompound) ... ok test_MissingBasic (test_nodesets.TestNodeSetFailure.test_MissingBasic) ... ok test_MissingFile (test_nodesets.TestNodeSetFailure.test_MissingFile) ... ok test_afferent_edges (test_population.TestEdgePopulation.test_afferent_edges) ... ok test_connecting_edges (test_population.TestEdgePopulation.test_connecting_edges) ... ok test_efferent_edges (test_population.TestEdgePopulation.test_efferent_edges) ... ok test_library_enumeration (test_population.TestEdgePopulation.test_library_enumeration) ... ok test_select_all (test_population.TestEdgePopulation.test_select_all) ... ok test_source (test_population.TestEdgePopulation.test_source) ... ok test_source_nodes (test_population.TestEdgePopulation.test_source_nodes) ... ok test_target (test_population.TestEdgePopulation.test_target) ... ok test_target_nodes (test_population.TestEdgePopulation.test_target_nodes) ... ok test_path_ctor (test_population.TestMisc.test_path_ctor) ... ok test_attribute_names (test_population.TestNodePopulation.test_attribute_names) ... ok test_enumeration_names (test_population.TestNodePopulation.test_enumeration_names) ... ok test_enumeration_values (test_population.TestNodePopulation.test_enumeration_values) ... ok test_get_attribute (test_population.TestNodePopulation.test_get_attribute) ... ok test_get_dynamics_attribute (test_population.TestNodePopulation.test_get_dynamics_attribute) ... ok test_match_values (test_population.TestNodePopulation.test_match_values) ... ok test_name (test_population.TestNodePopulation.test_name) ... ok test_select_all (test_population.TestNodePopulation.test_select_all) ... ok test_size (test_population.TestNodePopulation.test_size) ... ok test_basic (test_population.TestSelection.test_basic) ... ok test_comparison (test_population.TestSelection.test_comparison) ... ok test_dtypes (test_population.TestSelection.test_dtypes) ... ok test_from_ranges (test_population.TestSelection.test_from_ranges) ... ok test_from_values (test_population.TestSelection.test_from_values) ... ok test_from_values_empty (test_population.TestSelection.test_from_values_empty) ... ok test_union_intersection (test_population.TestSelection.test_union_intersection) ... ok test_block_gap_limit (test_reports.TestElementReportReader.test_block_gap_limit) ... ok test_get_all_population (test_reports.TestElementReportReader.test_get_all_population) ... ok test_get_inexistant_population (test_reports.TestElementReportReader.test_get_inexistant_population) ... HDF5-DIAG: Error detected in HDF5 (1.12.1) thread 0: #000: ../../src/H5G.c line 510 in H5Gopen2(): unable to open group major: Symbol table minor: Can't open object #001: ../../src/H5VLcallback.c line 4187 in H5VL_group_open(): group open failed major: Virtual Object Layer minor: Can't open object #002: ../../src/H5VLcallback.c line 4154 in H5VL__group_open(): group open failed major: Virtual Object Layer minor: Can't open object #003: ../../src/H5VLnative_group.c line 123 in H5VL__native_group_open(): unable to open group major: Symbol table minor: Can't open object #004: ../../src/H5Gint.c line 270 in H5G__open_name(): group not found major: Symbol table minor: Object not found #005: ../../src/H5Gloc.c line 442 in H5G_loc_find(): can't find object major: Symbol table minor: Object not found #006: ../../src/H5Gtraverse.c line 837 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #007: ../../src/H5Gtraverse.c line 613 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #008: ../../src/H5Gloc.c line 399 in H5G__loc_find_cb(): object 'foobar' doesn't exist major: Symbol table minor: Object not found ok test_get_node_id_element_id_mapping (test_reports.TestElementReportReader.test_get_node_id_element_id_mapping) ... ok test_get_node_ids (test_reports.TestElementReportReader.test_get_node_ids) ... ok test_get_population (test_reports.TestElementReportReader.test_get_population) ... ok test_get_reports_from_population (test_reports.TestElementReportReader.test_get_reports_from_population) ... ok test_block_gap_limit (test_reports.TestSomaReportReader.test_block_gap_limit) ... ok test_get_all_population (test_reports.TestSomaReportReader.test_get_all_population) ... ok test_get_inexistant_population (test_reports.TestSomaReportReader.test_get_inexistant_population) ... HDF5-DIAG: Error detected in HDF5 (1.12.1) thread 0: #000: ../../src/H5G.c line 510 in H5Gopen2(): unable to open group major: Symbol table minor: Can't open object #001: ../../src/H5VLcallback.c line 4187 in H5VL_group_open(): group open failed major: Virtual Object Layer minor: Can't open object #002: ../../src/H5VLcallback.c line 4154 in H5VL__group_open(): group open failed major: Virtual Object Layer minor: Can't open object #003: ../../src/H5VLnative_group.c line 123 in H5VL__native_group_open(): unable to open group major: Symbol table minor: Can't open object #004: ../../src/H5Gint.c line 270 in H5G__open_name(): group not found major: Symbol table minor: Object not found #005: ../../src/H5Gloc.c line 442 in H5G_loc_find(): can't find object major: Symbol table minor: Object not found #006: ../../src/H5Gtraverse.c line 837 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #007: ../../src/H5Gtraverse.c line 613 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #008: ../../src/H5Gloc.c line 399 in H5G__loc_find_cb(): object 'foobar' doesn't exist major: Symbol table minor: Object not found ok test_get_node_id_element_id_mapping (test_reports.TestSomaReportReader.test_get_node_id_element_id_mapping) ... ok test_get_population (test_reports.TestSomaReportReader.test_get_population) ... ok test_get_reports_from_population (test_reports.TestSomaReportReader.test_get_reports_from_population) ... ok test_getTimes_from_population (test_reports.TestSpikeReader.test_getTimes_from_population) ... ok test_get_all_populations (test_reports.TestSpikeReader.test_get_all_populations) ... ok test_get_inexistant_population (test_reports.TestSpikeReader.test_get_inexistant_population) ... HDF5-DIAG: Error detected in HDF5 (1.12.1) thread 0: #000: ../../src/H5G.c line 510 in H5Gopen2(): unable to open group major: Symbol table minor: Can't open object #001: ../../src/H5VLcallback.c line 4187 in H5VL_group_open(): group open failed major: Virtual Object Layer minor: Can't open object #002: ../../src/H5VLcallback.c line 4154 in H5VL__group_open(): group open failed major: Virtual Object Layer minor: Can't open object #003: ../../src/H5VLnative_group.c line 123 in H5VL__native_group_open(): unable to open group major: Symbol table minor: Can't open object #004: ../../src/H5Gint.c line 270 in H5G__open_name(): group not found major: Symbol table minor: Object not found #005: ../../src/H5Gloc.c line 442 in H5G_loc_find(): can't find object major: Symbol table minor: Object not found #006: ../../src/H5Gtraverse.c line 837 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #007: ../../src/H5Gtraverse.c line 613 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #008: ../../src/H5Gloc.c line 399 in H5G__loc_find_cb(): object 'foobar' doesn't exist major: Symbol table minor: Object not found ok test_get_population (test_reports.TestSpikeReader.test_get_population) ... ok test_get_spikes_from_population (test_reports.TestSpikeReader.test_get_spikes_from_population) ... ok ---------------------------------------------------------------------- Ran 78 tests in 0.054s OK + popd ~/build/BUILD/libsonata-0.1.23 + RPM_EC=0 ++ jobs -p + exit 0 Processing files: libsonata-0.1.23-4.fc40.aarch64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.uLTDYP + umask 022 + cd /builddir/build/BUILD + cd libsonata-0.1.23 + DOCDIR=/builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/share/doc/libsonata + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/share/doc/libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23/README.rst /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/share/doc/libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23/CHANGELOG.md /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/share/doc/libsonata + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.P0DKKe + umask 022 + cd /builddir/build/BUILD + cd libsonata-0.1.23 + LICENSEDIR=/builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/share/licenses/libsonata + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/share/licenses/libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23/COPYING.LESSER /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/share/licenses/libsonata + RPM_EC=0 ++ jobs -p + exit 0 Provides: libsonata = 0.1.23-4.fc40 libsonata(aarch-64) = 0.1.23-4.fc40 libsonata.so.0.1()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.5.0)(64bit) libhdf5.so.200()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: libsonata-devel-0.1.23-4.fc40.aarch64 Provides: libsonata-devel = 0.1.23-4.fc40 libsonata-devel(aarch-64) = 0.1.23-4.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libsonata.so.0.1()(64bit) Processing files: python3-libsonata-0.1.23-4.fc40.aarch64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.KeL7KN + umask 022 + cd /builddir/build/BUILD + cd libsonata-0.1.23 + DOCDIR=/builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/share/doc/python3-libsonata + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/share/doc/python3-libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23/README.rst /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/share/doc/python3-libsonata + cp -pr /builddir/build/BUILD/libsonata-0.1.23/CHANGELOG.md /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64/usr/share/doc/python3-libsonata + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-libsonata = 0.1.23-4.fc40 python3-libsonata = 0.1.23-4.fc40 python3-libsonata(aarch-64) = 0.1.23-4.fc40 python3.12-libsonata = 0.1.23-4.fc40 python3.12dist(libsonata) = 0.1.23 python3dist(libsonata) = 0.1.23 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.5.0)(64bit) libhdf5.so.200()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.11)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.12 python3.12dist(numpy) >= 1.17.3 rtld(GNU_HASH) Processing files: libsonata-debugsource-0.1.23-4.fc40.aarch64 Provides: libsonata-debugsource = 0.1.23-4.fc40 libsonata-debugsource(aarch-64) = 0.1.23-4.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: libsonata-debuginfo-0.1.23-4.fc40.aarch64 Provides: debuginfo(build-id) = 469008f0be7a9302bd32dfcb8daa7e21dcb1c2d0 libsonata-debuginfo = 0.1.23-4.fc40 libsonata-debuginfo(aarch-64) = 0.1.23-4.fc40 libsonata.so.0.1.23-0.1.23-4.fc40.aarch64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsonata-debugsource(aarch-64) = 0.1.23-4.fc40 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64 Wrote: /builddir/build/RPMS/libsonata-debugsource-0.1.23-4.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/libsonata-devel-0.1.23-4.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/libsonata-0.1.23-4.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/python3-libsonata-0.1.23-4.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/libsonata-debuginfo-0.1.23-4.fc40.aarch64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.LvQlAy + umask 022 + cd /builddir/build/BUILD + cd libsonata-0.1.23 + /usr/bin/rm -rf /builddir/build/BUILDROOT/libsonata-0.1.23-4.fc40.aarch64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.fH3eJW + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/libsonata-0.1.23-SPECPARTS + rm -rf libsonata-0.1.23 libsonata-0.1.23.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild libsonata-0.1.23-4.fc40.src.rpm Finish: build phase for libsonata-0.1.23-4.fc40.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1704214220.255177/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-aarch64-1704214220.255177/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-aarch64-1704214220.255177/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/libsonata-0.1.23-4.fc40.src.rpm) Config(child) 2 minutes 22 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "libsonata-debuginfo", "epoch": null, "version": "0.1.23", "release": "4.fc40", "arch": "aarch64" }, { "name": "libsonata-debugsource", "epoch": null, "version": "0.1.23", "release": "4.fc40", "arch": "aarch64" }, { "name": "libsonata", "epoch": null, "version": "0.1.23", "release": "4.fc40", "arch": "aarch64" }, { "name": "libsonata", "epoch": null, "version": "0.1.23", "release": "4.fc40", "arch": "src" }, { "name": "libsonata-devel", "epoch": null, "version": "0.1.23", "release": "4.fc40", "arch": "aarch64" }, { "name": "python3-libsonata", "epoch": null, "version": "0.1.23", "release": "4.fc40", "arch": "aarch64" } ] } RPMResults finished