Mock Version: 4.1 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-lfpy.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1689367256.939641/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.df_vkcbo:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.df_vkcbo:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '9e52a546538446218a140cebb1554a66', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1689367256.939641/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.df_vkcbo:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/python-lfpy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689120000 Wrote: /builddir/build/SRPMS/python-lfpy-2.3-2.fc39.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/python-lfpy.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1689367256.939641/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.df_vkcbo:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.df_vkcbo:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'd74bd7b066264c228480750217457c4a', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1689367256.939641/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.df_vkcbo:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/python-lfpy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689120000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.dA9Ihw + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf LFPy-2.3 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/LFPy-2.3.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd LFPy-2.3 + /usr/bin/mkdir -p SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + sed -i '/mpi4py/ d' setup.py ++ find . -type f -name '*.py' + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./setup.py + touch -r ./setup.py ./setup.py.new + mv ./setup.py.new ./setup.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_suppl.py + touch -r ./examples/example_suppl.py ./examples/example_suppl.py.new + mv ./examples/example_suppl.py.new ./examples/example_suppl.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_network/example_network_to_file.py + touch -r ./examples/example_network/example_network_to_file.py ./examples/example_network/example_network_to_file.py.new + mv ./examples/example_network/example_network_to_file.py.new ./examples/example_network/example_network_to_file.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_network/example_network_stim.py + touch -r ./examples/example_network/example_network_stim.py ./examples/example_network/example_network_stim.py.new + mv ./examples/example_network/example_network_stim.py.new ./examples/example_network/example_network_stim.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_network/example_network_population.py + touch -r ./examples/example_network/example_network_population.py ./examples/example_network/example_network_population.py.new + mv ./examples/example_network/example_network_population.py.new ./examples/example_network/example_network_population.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_network/example_network_cell.py + touch -r ./examples/example_network/example_network_cell.py ./examples/example_network/example_network_cell.py.new + mv ./examples/example_network/example_network_cell.py.new ./examples/example_network/example_network_cell.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_network/example_network.py + touch -r ./examples/example_network/example_network.py ./examples/example_network/example_network.py.new + mv ./examples/example_network/example_network.py.new ./examples/example_network/example_network.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_mpi_2.py + touch -r ./examples/example_mpi_2.py ./examples/example_mpi_2.py.new + mv ./examples/example_mpi_2.py.new ./examples/example_mpi_2.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_mpi.py + touch -r ./examples/example_mpi.py ./examples/example_mpi.py.new + mv ./examples/example_mpi.py.new ./examples/example_mpi.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_loadL5bPCmodelsEH.py + touch -r ./examples/example_loadL5bPCmodelsEH.py ./examples/example_loadL5bPCmodelsEH.py.new + mv ./examples/example_loadL5bPCmodelsEH.py.new ./examples/example_loadL5bPCmodelsEH.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_anisotropy.py + touch -r ./examples/example_anisotropy.py ./examples/example_anisotropy.py.new + mv ./examples/example_anisotropy.py.new ./examples/example_anisotropy.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_MEA.py + touch -r ./examples/example_MEA.py ./examples/example_MEA.py.new + mv ./examples/example_MEA.py.new ./examples/example_MEA.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_LFPyCellTemplate.py + touch -r ./examples/example_LFPyCellTemplate.py ./examples/example_LFPyCellTemplate.py.new + mv ./examples/example_LFPyCellTemplate.py.new ./examples/example_LFPyCellTemplate.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_EPFL_neurons.py + touch -r ./examples/example_EPFL_neurons.py ./examples/example_EPFL_neurons.py.new + mv ./examples/example_EPFL_neurons.py.new ./examples/example_EPFL_neurons.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_EEG.py + touch -r ./examples/example_EEG.py ./examples/example_EEG.py.new + mv ./examples/example_EEG.py.new ./examples/example_EEG.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_ECoG_4sphere.py + touch -r ./examples/example_ECoG_4sphere.py ./examples/example_ECoG_4sphere.py.new + mv ./examples/example_ECoG_4sphere.py.new ./examples/example_ECoG_4sphere.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/example_ECoG.py + touch -r ./examples/example_ECoG.py ./examples/example_ECoG.py.new + mv ./examples/example_ECoG.py.new ./examples/example_ECoG.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_7_8/figure_7_8.py + touch -r ./examples/bioRxiv281717/figure_7_8/figure_7_8.py ./examples/bioRxiv281717/figure_7_8/figure_7_8.py.new + mv ./examples/bioRxiv281717/figure_7_8/figure_7_8.py.new ./examples/bioRxiv281717/figure_7_8/figure_7_8.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_7_8/example_parallel_network_plotting.py + touch -r ./examples/bioRxiv281717/figure_7_8/example_parallel_network_plotting.py ./examples/bioRxiv281717/figure_7_8/example_parallel_network_plotting.py.new + mv ./examples/bioRxiv281717/figure_7_8/example_parallel_network_plotting.py.new ./examples/bioRxiv281717/figure_7_8/example_parallel_network_plotting.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameterspace.py + touch -r ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameterspace.py ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameterspace.py.new + mv ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameterspace.py.new ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameterspace.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameters.py + touch -r ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameters.py ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameters.py.new + mv ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameters.py.new ./examples/bioRxiv281717/figure_7_8/example_parallel_network_parameters.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_7_8/example_parallel_network_methods.py + touch -r ./examples/bioRxiv281717/figure_7_8/example_parallel_network_methods.py ./examples/bioRxiv281717/figure_7_8/example_parallel_network_methods.py.new + mv ./examples/bioRxiv281717/figure_7_8/example_parallel_network_methods.py.new ./examples/bioRxiv281717/figure_7_8/example_parallel_network_methods.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_7_8/example_parallel_network.py + touch -r ./examples/bioRxiv281717/figure_7_8/example_parallel_network.py ./examples/bioRxiv281717/figure_7_8/example_parallel_network.py.new + mv ./examples/bioRxiv281717/figure_7_8/example_parallel_network.py.new ./examples/bioRxiv281717/figure_7_8/example_parallel_network.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_6.py + touch -r ./examples/bioRxiv281717/figure_6.py ./examples/bioRxiv281717/figure_6.py.new + mv ./examples/bioRxiv281717/figure_6.py.new ./examples/bioRxiv281717/figure_6.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_5.py + touch -r ./examples/bioRxiv281717/figure_5.py ./examples/bioRxiv281717/figure_5.py.new + mv ./examples/bioRxiv281717/figure_5.py.new ./examples/bioRxiv281717/figure_5.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_4.py + touch -r ./examples/bioRxiv281717/figure_4.py ./examples/bioRxiv281717/figure_4.py.new + mv ./examples/bioRxiv281717/figure_4.py.new ./examples/bioRxiv281717/figure_4.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/figure_2.py + touch -r ./examples/bioRxiv281717/figure_2.py ./examples/bioRxiv281717/figure_2.py.new + mv ./examples/bioRxiv281717/figure_2.py.new ./examples/bioRxiv281717/figure_2.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/example_parallel_network_plotting.py + touch -r ./examples/bioRxiv281717/example_parallel_network_plotting.py ./examples/bioRxiv281717/example_parallel_network_plotting.py.new + mv ./examples/bioRxiv281717/example_parallel_network_plotting.py.new ./examples/bioRxiv281717/example_parallel_network_plotting.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/example_parallel_network_parameters.py + touch -r ./examples/bioRxiv281717/example_parallel_network_parameters.py ./examples/bioRxiv281717/example_parallel_network_parameters.py.new + mv ./examples/bioRxiv281717/example_parallel_network_parameters.py.new ./examples/bioRxiv281717/example_parallel_network_parameters.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/example_parallel_network_methods.py + touch -r ./examples/bioRxiv281717/example_parallel_network_methods.py ./examples/bioRxiv281717/example_parallel_network_methods.py.new + mv ./examples/bioRxiv281717/example_parallel_network_methods.py.new ./examples/bioRxiv281717/example_parallel_network_methods.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./examples/bioRxiv281717/example_parallel_network.py + touch -r ./examples/bioRxiv281717/example_parallel_network.py ./examples/bioRxiv281717/example_parallel_network.py.new + mv ./examples/bioRxiv281717/example_parallel_network.py.new ./examples/bioRxiv281717/example_parallel_network.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./doc/conf.py + touch -r ./doc/conf.py ./doc/conf.py.new + mv ./doc/conf.py.new ./doc/conf.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/version.py + touch -r ./LFPy/version.py ./LFPy/version.py.new + mv ./LFPy/version.py.new ./LFPy/version.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/tools.py + touch -r ./LFPy/tools.py ./LFPy/tools.py.new + mv ./LFPy/tools.py.new ./LFPy/tools.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_tools.py + touch -r ./LFPy/test/test_tools.py ./LFPy/test/test_tools.py.new + mv ./LFPy/test/test_tools.py.new ./LFPy/test/test_tools.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_templatecell.py + touch -r ./LFPy/test/test_templatecell.py ./LFPy/test/test_templatecell.py.new + mv ./LFPy/test/test_templatecell.py.new ./LFPy/test/test_templatecell.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_recextelectrode.py + touch -r ./LFPy/test/test_recextelectrode.py ./LFPy/test/test_recextelectrode.py.new + mv ./LFPy/test/test_recextelectrode.py.new ./LFPy/test/test_recextelectrode.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_pointprocess.py + touch -r ./LFPy/test/test_pointprocess.py ./LFPy/test/test_pointprocess.py.new + mv ./LFPy/test/test_pointprocess.py.new ./LFPy/test/test_pointprocess.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_networkcell.py + touch -r ./LFPy/test/test_networkcell.py ./LFPy/test/test_networkcell.py.new + mv ./LFPy/test/test_networkcell.py.new ./LFPy/test/test_networkcell.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_network.py + touch -r ./LFPy/test/test_network.py ./LFPy/test/test_network.py.new + mv ./LFPy/test/test_network.py.new ./LFPy/test/test_network.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_morphology_import.py + touch -r ./LFPy/test/test_morphology_import.py ./LFPy/test/test_morphology_import.py.new + mv ./LFPy/test/test_morphology_import.py.new ./LFPy/test/test_morphology_import.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_misc.py + touch -r ./LFPy/test/test_misc.py ./LFPy/test/test_misc.py.new + mv ./LFPy/test/test_misc.py.new ./LFPy/test/test_misc.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_lfpcalc.py + touch -r ./LFPy/test/test_lfpcalc.py ./LFPy/test/test_lfpcalc.py.new + mv ./LFPy/test/test_lfpcalc.py.new ./LFPy/test/test_lfpcalc.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_inputgenerators.py + touch -r ./LFPy/test/test_inputgenerators.py ./LFPy/test/test_inputgenerators.py.new + mv ./LFPy/test/test_inputgenerators.py.new ./LFPy/test/test_inputgenerators.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_imem.py + touch -r ./LFPy/test/test_imem.py ./LFPy/test/test_imem.py.new + mv ./LFPy/test/test_imem.py.new ./LFPy/test/test_imem.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_eegmegcalc.py + touch -r ./LFPy/test/test_eegmegcalc.py ./LFPy/test/test_eegmegcalc.py.new + mv ./LFPy/test/test_eegmegcalc.py.new ./LFPy/test/test_eegmegcalc.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_cell.py + touch -r ./LFPy/test/test_cell.py ./LFPy/test/test_cell.py.new + mv ./LFPy/test/test_cell.py.new ./LFPy/test/test_cell.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/test_alias_method.py + touch -r ./LFPy/test/test_alias_method.py ./LFPy/test/test_alias_method.py.new + mv ./LFPy/test/test_alias_method.py.new ./LFPy/test/test_alias_method.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/common.py + touch -r ./LFPy/test/common.py ./LFPy/test/common.py.new + mv ./LFPy/test/common.py.new ./LFPy/test/common.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/test/__init__.py + touch -r ./LFPy/test/__init__.py ./LFPy/test/__init__.py.new + mv ./LFPy/test/__init__.py.new ./LFPy/test/__init__.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/templatecell.py + touch -r ./LFPy/templatecell.py ./LFPy/templatecell.py.new + mv ./LFPy/templatecell.py.new ./LFPy/templatecell.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/run_simulation.py + touch -r ./LFPy/run_simulation.py ./LFPy/run_simulation.py.new + mv ./LFPy/run_simulation.py.new ./LFPy/run_simulation.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/pointprocess.py + touch -r ./LFPy/pointprocess.py ./LFPy/pointprocess.py.new + mv ./LFPy/pointprocess.py.new ./LFPy/pointprocess.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/network.py + touch -r ./LFPy/network.py ./LFPy/network.py.new + mv ./LFPy/network.py.new ./LFPy/network.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/inputgenerators.py + touch -r ./LFPy/inputgenerators.py ./LFPy/inputgenerators.py.new + mv ./LFPy/inputgenerators.py.new ./LFPy/inputgenerators.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/eegmegcalc.py + touch -r ./LFPy/eegmegcalc.py ./LFPy/eegmegcalc.py.new + mv ./LFPy/eegmegcalc.py.new ./LFPy/eegmegcalc.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/cell.py + touch -r ./LFPy/cell.py ./LFPy/cell.py.new + mv ./LFPy/cell.py.new ./LFPy/cell.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/alias_method.py + touch -r ./LFPy/alias_method.py ./LFPy/alias_method.py.new + mv ./LFPy/alias_method.py.new ./LFPy/alias_method.py + for lib in $(find . -type f -name "*.py") + sed '1{\@^#!/usr/bin/env python@d}' ./LFPy/__init__.py + touch -r ./LFPy/__init__.py ./LFPy/__init__.py.new + mv ./LFPy/__init__.py.new ./LFPy/__init__.py + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.2fFqKG + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd LFPy-2.3 + mkdir -p /builddir/build/BUILD/LFPy-2.3/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/LFPy-2.3/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/LFPy-2.3/pyproject-wheeldir Processing /builddir/build/BUILD/LFPy-2.3 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) /usr/lib/python3.12/site-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2023-Sep-26, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running dist_info creating /builddir/build/BUILD/LFPy-2.3/.pyproject-builddir/pip-modern-metadata-hfxuw40_/LFPy.egg-info writing /builddir/build/BUILD/LFPy-2.3/.pyproject-builddir/pip-modern-metadata-hfxuw40_/LFPy.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/LFPy-2.3/.pyproject-builddir/pip-modern-metadata-hfxuw40_/LFPy.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/LFPy-2.3/.pyproject-builddir/pip-modern-metadata-hfxuw40_/LFPy.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/LFPy-2.3/.pyproject-builddir/pip-modern-metadata-hfxuw40_/LFPy.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/LFPy-2.3/.pyproject-builddir/pip-modern-metadata-hfxuw40_/LFPy.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/LFPy-2.3/.pyproject-builddir/pip-modern-metadata-hfxuw40_/LFPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file '/builddir/build/BUILD/LFPy-2.3/.pyproject-builddir/pip-modern-metadata-hfxuw40_/LFPy.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/LFPy-2.3/.pyproject-builddir/pip-modern-metadata-hfxuw40_/LFPy-2.3.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: LFPy Building wheel for LFPy (pyproject.toml): started Running command Building wheel for LFPy (pyproject.toml) /usr/lib/python3.12/site-packages/setuptools/dist.py:755: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. By 2023-Sep-26, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-312 creating build/lib.linux-x86_64-cpython-312/LFPy copying LFPy/__init__.py -> build/lib.linux-x86_64-cpython-312/LFPy copying LFPy/alias_method.py -> build/lib.linux-x86_64-cpython-312/LFPy copying LFPy/cell.py -> build/lib.linux-x86_64-cpython-312/LFPy copying LFPy/eegmegcalc.py -> build/lib.linux-x86_64-cpython-312/LFPy copying LFPy/inputgenerators.py -> build/lib.linux-x86_64-cpython-312/LFPy copying LFPy/network.py -> build/lib.linux-x86_64-cpython-312/LFPy copying LFPy/pointprocess.py -> build/lib.linux-x86_64-cpython-312/LFPy copying LFPy/run_simulation.py -> build/lib.linux-x86_64-cpython-312/LFPy copying LFPy/templatecell.py -> build/lib.linux-x86_64-cpython-312/LFPy copying LFPy/tools.py -> build/lib.linux-x86_64-cpython-312/LFPy copying LFPy/version.py -> build/lib.linux-x86_64-cpython-312/LFPy running egg_info writing LFPy.egg-info/PKG-INFO writing dependency_links to LFPy.egg-info/dependency_links.txt writing requirements to LFPy.egg-info/requires.txt writing top-level names to LFPy.egg-info/top_level.txt reading manifest file 'LFPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'LFPy.egg-info/SOURCES.txt' /usr/lib/python3.12/site-packages/setuptools/command/build_py.py:201: _Warning: Package 'LFPy.test' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'LFPy.test' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'LFPy.test' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'LFPy.test' to be distributed and are already explicitly excluding 'LFPy.test' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying LFPy/alias_method.pyx -> build/lib.linux-x86_64-cpython-312/LFPy copying LFPy/run_simulation.pyx -> build/lib.linux-x86_64-cpython-312/LFPy creating build/lib.linux-x86_64-cpython-312/LFPy/test copying LFPy/test/L23E_p23.hoc -> build/lib.linux-x86_64-cpython-312/LFPy/test copying LFPy/test/__init__.py -> build/lib.linux-x86_64-cpython-312/LFPy/test copying LFPy/test/ball_and_stick_template.hoc -> build/lib.linux-x86_64-cpython-312/LFPy/test copying LFPy/test/ball_and_sticks.hoc -> build/lib.linux-x86_64-cpython-312/LFPy/test copying LFPy/test/ball_and_sticks_w_lists.hoc -> build/lib.linux-x86_64-cpython-312/LFPy/test copying LFPy/test/common.py -> build/lib.linux-x86_64-cpython-312/LFPy/test copying LFPy/test/expsyni.mod -> build/lib.linux-x86_64-cpython-312/LFPy/test copying LFPy/test/fem_mix_dip.npz -> build/lib.linux-x86_64-cpython-312/LFPy/test copying LFPy/test/sinsyn.mod -> build/lib.linux-x86_64-cpython-312/LFPy/test copying LFPy/test/stick.hoc -> build/lib.linux-x86_64-cpython-312/LFPy/test copying LFPy/test/stick_template.hoc -> build/lib.linux-x86_64-cpython-312/LFPy/test copying LFPy/test/sticks_not_connected_head_to_toe.hoc -> build/lib.linux-x86_64-cpython-312/LFPy/test copying LFPy/test/test_alias_method.py -> build/lib.linux-x86_64-cpython-312/LFPy/test copying LFPy/test/test_cell.py -> build/lib.linux-x86_64-cpython-312/LFPy/test copying LFPy/test/test_eegmegcalc.py -> build/lib.linux-x86_64-cpython-312/LFPy/test copying LFPy/test/test_imem.py -> build/lib.linux-x86_64-cpython-312/LFPy/test copying LFPy/test/test_inputgenerators.py -> build/lib.linux-x86_64-cpython-312/LFPy/test copying LFPy/test/test_lfpcalc.py -> build/lib.linux-x86_64-cpython-312/LFPy/test copying LFPy/test/test_misc.py -> build/lib.linux-x86_64-cpython-312/LFPy/test copying LFPy/test/test_morphology_import.py -> build/lib.linux-x86_64-cpython-312/LFPy/test copying LFPy/test/test_network.py -> build/lib.linux-x86_64-cpython-312/LFPy/test copying LFPy/test/test_networkcell.py -> build/lib.linux-x86_64-cpython-312/LFPy/test copying LFPy/test/test_pointprocess.py -> build/lib.linux-x86_64-cpython-312/LFPy/test copying LFPy/test/test_recextelectrode.py -> build/lib.linux-x86_64-cpython-312/LFPy/test copying LFPy/test/test_templatecell.py -> build/lib.linux-x86_64-cpython-312/LFPy/test copying LFPy/test/test_tools.py -> build/lib.linux-x86_64-cpython-312/LFPy/test running build_ext cythoning LFPy/run_simulation.pyx to LFPy/run_simulation.c cythoning LFPy/alias_method.pyx to LFPy/alias_method.c building 'LFPy.run_simulation' extension creating build/temp.linux-x86_64-cpython-312 creating build/temp.linux-x86_64-cpython-312/LFPy gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c LFPy/run_simulation.c -o build/temp.linux-x86_64-cpython-312/LFPy/run_simulation.o In file included from /usr/lib64/python3.12/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/lib64/python3.12/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.12/site-packages/numpy/core/include/numpy/arrayobject.h:5, from LFPy/run_simulation.c:750: /usr/lib64/python3.12/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ LFPy/run_simulation.c: In function ‘__pyx_pf_4LFPy_14run_simulation__run_simulation_with_probes’: LFPy/run_simulation.c:3319:5: warning: ‘Py_OptimizeFlag’ is deprecated [-Wdeprecated-declarations] 3319 | if (unlikely(!Py_OptimizeFlag)) { | ^~ In file included from /usr/include/python3.12/Python.h:48, from LFPy/run_simulation.c:6: /usr/include/python3.12/cpython/pydebug.h:13:37: note: declared here 13 | Py_DEPRECATED(3.12) PyAPI_DATA(int) Py_OptimizeFlag; | ^~~~~~~~~~~~~~~ gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-312/LFPy/run_simulation.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-312/LFPy/run_simulation.cpython-312-x86_64-linux-gnu.so building 'LFPy.alias_method' extension gcc -fno-strict-overflow -Wsign-compare -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -fstack-protector-strong -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -D_GNU_SOURCE -fPIC -fwrapv -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.12/site-packages/numpy/core/include -I/usr/include/python3.12 -c LFPy/alias_method.c -o build/temp.linux-x86_64-cpython-312/LFPy/alias_method.o In file included from /usr/lib64/python3.12/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/lib64/python3.12/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.12/site-packages/numpy/core/include/numpy/arrayobject.h:5, from LFPy/alias_method.c:750: /usr/lib64/python3.12/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ LFPy/alias_method.c: In function ‘__pyx_f_4LFPy_12alias_method_alias_method’: LFPy/alias_method.c:2002:3: warning: ‘Py_OptimizeFlag’ is deprecated [-Wdeprecated-declarations] 2002 | if (unlikely(!Py_OptimizeFlag)) { | ^~ In file included from /usr/include/python3.12/Python.h:48, from LFPy/alias_method.c:6: /usr/include/python3.12/cpython/pydebug.h:13:37: note: declared here 13 | Py_DEPRECATED(3.12) PyAPI_DATA(int) Py_OptimizeFlag; | ^~~~~~~~~~~~~~~ gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -Wl,--build-id=sha1 -g -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-x86_64-cpython-312/LFPy/alias_method.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-312/LFPy/alias_method.cpython-312-x86_64-linux-gnu.so installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-312/LFPy/alias_method.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-312/LFPy/run_simulation.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/LFPy creating build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-312/LFPy/test/test_tools.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-312/LFPy/test/test_templatecell.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-312/LFPy/test/test_recextelectrode.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-312/LFPy/test/test_pointprocess.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-312/LFPy/test/test_networkcell.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-312/LFPy/test/test_network.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-312/LFPy/test/test_morphology_import.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-312/LFPy/test/test_misc.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-312/LFPy/test/test_lfpcalc.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-312/LFPy/test/test_inputgenerators.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-312/LFPy/test/test_imem.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-312/LFPy/test/test_eegmegcalc.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-312/LFPy/test/test_cell.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-312/LFPy/test/test_alias_method.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-312/LFPy/test/sticks_not_connected_head_to_toe.hoc -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-312/LFPy/test/stick_template.hoc -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-312/LFPy/test/stick.hoc -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-312/LFPy/test/sinsyn.mod -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-312/LFPy/test/fem_mix_dip.npz -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-312/LFPy/test/expsyni.mod -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-312/LFPy/test/common.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-312/LFPy/test/ball_and_sticks_w_lists.hoc -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-312/LFPy/test/ball_and_sticks.hoc -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-312/LFPy/test/ball_and_stick_template.hoc -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-312/LFPy/test/__init__.py -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-312/LFPy/test/L23E_p23.hoc -> build/bdist.linux-x86_64/wheel/LFPy/test copying build/lib.linux-x86_64-cpython-312/LFPy/run_simulation.pyx -> build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-312/LFPy/alias_method.pyx -> build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-312/LFPy/version.py -> build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-312/LFPy/tools.py -> build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-312/LFPy/templatecell.py -> build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-312/LFPy/run_simulation.py -> build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-312/LFPy/pointprocess.py -> build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-312/LFPy/network.py -> build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-312/LFPy/inputgenerators.py -> build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-312/LFPy/eegmegcalc.py -> build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-312/LFPy/cell.py -> build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-312/LFPy/alias_method.py -> build/bdist.linux-x86_64/wheel/LFPy copying build/lib.linux-x86_64-cpython-312/LFPy/__init__.py -> build/bdist.linux-x86_64/wheel/LFPy running install_egg_info Copying LFPy.egg-info to build/bdist.linux-x86_64/wheel/LFPy-2.3-py3.12.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/LFPy-2.3.dist-info/WHEEL creating '/builddir/build/BUILD/LFPy-2.3/.pyproject-builddir/pip-wheel-25uozz9f/.tmp-r0w3orgj/LFPy-2.3-cp312-cp312-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'LFPy/__init__.py' adding 'LFPy/alias_method.cpython-312-x86_64-linux-gnu.so' adding 'LFPy/alias_method.py' adding 'LFPy/alias_method.pyx' adding 'LFPy/cell.py' adding 'LFPy/eegmegcalc.py' adding 'LFPy/inputgenerators.py' adding 'LFPy/network.py' adding 'LFPy/pointprocess.py' adding 'LFPy/run_simulation.cpython-312-x86_64-linux-gnu.so' adding 'LFPy/run_simulation.py' adding 'LFPy/run_simulation.pyx' adding 'LFPy/templatecell.py' adding 'LFPy/tools.py' adding 'LFPy/version.py' adding 'LFPy/test/L23E_p23.hoc' adding 'LFPy/test/__init__.py' adding 'LFPy/test/ball_and_stick_template.hoc' adding 'LFPy/test/ball_and_sticks.hoc' adding 'LFPy/test/ball_and_sticks_w_lists.hoc' adding 'LFPy/test/common.py' adding 'LFPy/test/expsyni.mod' adding 'LFPy/test/fem_mix_dip.npz' adding 'LFPy/test/sinsyn.mod' adding 'LFPy/test/stick.hoc' adding 'LFPy/test/stick_template.hoc' adding 'LFPy/test/sticks_not_connected_head_to_toe.hoc' adding 'LFPy/test/test_alias_method.py' adding 'LFPy/test/test_cell.py' adding 'LFPy/test/test_eegmegcalc.py' adding 'LFPy/test/test_imem.py' adding 'LFPy/test/test_inputgenerators.py' adding 'LFPy/test/test_lfpcalc.py' adding 'LFPy/test/test_misc.py' adding 'LFPy/test/test_morphology_import.py' adding 'LFPy/test/test_network.py' adding 'LFPy/test/test_networkcell.py' adding 'LFPy/test/test_pointprocess.py' adding 'LFPy/test/test_recextelectrode.py' adding 'LFPy/test/test_templatecell.py' adding 'LFPy/test/test_tools.py' adding 'LFPy-2.3.dist-info/LICENSE' adding 'LFPy-2.3.dist-info/METADATA' adding 'LFPy-2.3.dist-info/WHEEL' adding 'LFPy-2.3.dist-info/top_level.txt' adding 'LFPy-2.3.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for LFPy (pyproject.toml): finished with status 'done' Created wheel for LFPy: filename=LFPy-2.3-cp312-cp312-linux_x86_64.whl size=529506 sha256=442ae412fd242ee8e66d26566015cb8af18afec4651ab6286ccddf5f9101d54e Stored in directory: /builddir/.cache/pip/wheels/df/83/e4/cbaa31111ceec9de59191746d895bc66f313a0dec4b5968710 Successfully built LFPy + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.bTdv2H + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64 ++ dirname /builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd LFPy-2.3 ++ ls /builddir/build/BUILD/LFPy-2.3/pyproject-wheeldir/LFPy-2.3-cp312-cp312-linux_x86_64.whl ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' ++ xargs basename --multiple + specifier=LFPy==2.3 + TMPDIR=/builddir/build/BUILD/LFPy-2.3/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/LFPy-2.3/pyproject-wheeldir LFPy==2.3 Using pip 23.1.2 from /usr/lib/python3.12/site-packages/pip (python 3.12) Looking in links: /builddir/build/BUILD/LFPy-2.3/pyproject-wheeldir Processing ./pyproject-wheeldir/LFPy-2.3-cp312-cp312-linux_x86_64.whl Installing collected packages: LFPy Successfully installed LFPy-2.3 + '[' -d /builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/bin ']' + rm -f /builddir/build/BUILD/python-lfpy-2.3-2.fc39.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/lib/python3.12/site-packages ']' + '[' /builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/lib64/python3.12/site-packages '!=' /builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/lib/python3.12/site-packages ']' + '[' -d /builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/lib64/python3.12/site-packages ']' + site_dirs+=("/usr/lib64/python3.12/site-packages") + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib64/python3.12/site-packages/LFPy-2.3.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/lib64/python3.12/site-packages/LFPy-2.3.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64 --record /builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/lib64/python3.12/site-packages/LFPy-2.3.dist-info/RECORD --output /builddir/build/BUILD/python-lfpy-2.3-2.fc39.x86_64-pyproject-record + rm -fv /builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/lib64/python3.12/site-packages/LFPy-2.3.dist-info/RECORD removed '/builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/lib64/python3.12/site-packages/LFPy-2.3.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/lib64/python3.12/site-packages/LFPy-2.3.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/lib64/python3.12/site-packages/LFPy-2.3.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-lfpy-2.3-2.fc39.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_PERCENTAGES_COUNT=2 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-lfpy-2.3-2.fc39.x86_64-pyproject-files --output-modules /builddir/build/BUILD/python-lfpy-2.3-2.fc39.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64 --sitelib /usr/lib/python3.12/site-packages --sitearch /usr/lib64/python3.12/site-packages --python-version 3.12 --pyproject-record /builddir/build/BUILD/python-lfpy-2.3-2.fc39.x86_64-pyproject-record --prefix /usr LFPy + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.3-2.fc39 --unique-debug-suffix -2.3-2.fc39.x86_64 --unique-debug-src-base python-lfpy-2.3-2.fc39.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/LFPy-2.3 find-debuginfo: starting Extracting debug info from 2 files DWARF-compressing 2 files sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/python-lfpy-2.3-2.fc39.x86_64 1671 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/lib/debug/usr/lib64/python3.12 using python3.12 Bytecompiling .py files below /builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/lib64/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.LaE8TW + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd LFPy-2.3 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ LMOD_ALLOW_ROOT_USE=yes ++ '[' -n '' ']' ++ '[' yes '!=' yes ']' ++ '[' -z /usr/share/modulefiles ']' ++ findExec READLINK_CMD /usr/bin/readlink readlink ++ Nm=READLINK_CMD ++ confPath=/usr/bin/readlink ++ execNm=readlink ++ eval READLINK_CMD=/usr/bin/readlink +++ READLINK_CMD=/usr/bin/readlink ++ '[' '!' -x /usr/bin/readlink ']' ++ unset Nm confPath execNm ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec ++ '[' -f /proc/909/exe ']' +++ /usr/bin/readlink /proc/909/exe ++ my_shell=/usr/bin/bash +++ /usr/bin/expr /usr/bin/bash : '-*\(.*\)' ++ my_shell=/usr/bin/bash +++ /usr/bin/basename /usr/bin/bash ++ my_shell=bash ++ case ${my_shell} in ++ '[' -f /usr/share/lmod/lmod/init/bash ']' ++ . /usr/share/lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/share/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT LMOD_ALLOW_ROOT_USE READLINK_CMD + module load mpi/mpich-x86_64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/bin:/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/lib/python3.12/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/LFPy-2.3/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=2 + /usr/bin/pytest LFPy/test/ ============================= test session starts ============================== platform linux -- Python 3.12.0b4, pytest-7.3.2, pluggy-1.0.0 rootdir: /builddir/build/BUILD/LFPy-2.3 collected 305 items LFPy/test/test_alias_method.py ..... [ 1%] LFPy/test/test_cell.py ................................................. [ 17%] .................................. [ 28%] LFPy/test/test_eegmegcalc.py .................................... [ 40%] LFPy/test/test_imem.py ..... [ 42%] LFPy/test/test_inputgenerators.py . [ 42%] LFPy/test/test_lfpcalc.py ...................... [ 49%] LFPy/test/test_misc.py .. [ 50%] LFPy/test/test_morphology_import.py . [ 50%] LFPy/test/test_network.py ........ [ 53%] LFPy/test/test_networkcell.py .......................................... [ 67%] ............... [ 72%] LFPy/test/test_pointprocess.py ........... [ 75%] LFPy/test/test_recextelectrode.py ............... [ 80%] LFPy/test/test_templatecell.py ......................................... [ 94%] ................ [ 99%] LFPy/test/test_tools.py .. [100%] =============================== warnings summary =============================== LFPy/test/test_cell.py::testCell::test_cell_get_axial_currents_from_vmem_12 LFPy/test/test_cell.py::testCell::test_get_multi_current_dipole_moments_04 LFPy/test/test_eegmegcalc.py::testInfiniteVolumeConductor::test_get_multi_dipole_potential01 /builddir/build/BUILD/LFPy-2.3/LFPy/cell.py:182: UserWarning: 0 sections detected! Consider setting 'delete_sections=True' warn(mssg) LFPy/test/test_cell.py::testCell::test_cell_get_axial_currents_from_vmem_13 LFPy/test/test_eegmegcalc.py::testInfiniteVolumeConductor::test_get_multi_dipole_potential02 /builddir/build/BUILD/LFPy-2.3/LFPy/cell.py:182: UserWarning: 4 sections detected! Consider setting 'delete_sections=True' warn(mssg) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================== 305 passed, 5 warnings in 80.21s (0:01:20) ================== + '[' '!' -f /builddir/build/BUILD/python-lfpy-2.3-2.fc39.x86_64-pyproject-modules ']' + PATH=/builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/bin:/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/lib/python3.12/site-packages + _PYTHONSITE=/builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/lib/python3.12/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/python-lfpy-2.3-2.fc39.x86_64-pyproject-modules -e '*x86_64*' -e '*test*' Check import: LFPy Warning: no DISPLAY environment variable. --No graphics will be displayed. Check import: LFPy.alias_method Check import: LFPy.cell Check import: LFPy.eegmegcalc Check import: LFPy.inputgenerators Check import: LFPy.network Check import: LFPy.pointprocess Check import: LFPy.run_simulation Check import: LFPy.templatecell Check import: LFPy.tools Check import: LFPy.version + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ LMOD_ALLOW_ROOT_USE=yes ++ '[' -n '' ']' ++ '[' yes '!=' yes ']' ++ '[' -z /usr/share/modulefiles ']' ++ findExec READLINK_CMD /usr/bin/readlink readlink ++ Nm=READLINK_CMD ++ confPath=/usr/bin/readlink ++ execNm=readlink ++ eval READLINK_CMD=/usr/bin/readlink +++ READLINK_CMD=/usr/bin/readlink ++ '[' '!' -x /usr/bin/readlink ']' ++ unset Nm confPath execNm ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec ++ '[' -f /proc/909/exe ']' +++ /usr/bin/readlink /proc/909/exe ++ my_shell=/usr/bin/bash +++ /usr/bin/expr /usr/bin/bash : '-*\(.*\)' ++ my_shell=/usr/bin/bash +++ /usr/bin/basename /usr/bin/bash ++ my_shell=bash ++ case ${my_shell} in ++ '[' -f /usr/share/lmod/lmod/init/bash ']' ++ . /usr/share/lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/share/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT LMOD_ALLOW_ROOT_USE READLINK_CMD + module unload mpi/mpich-x86_64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ LMOD_ALLOW_ROOT_USE=yes ++ '[' -n '' ']' ++ '[' yes '!=' yes ']' ++ '[' -z /usr/share/modulefiles ']' ++ findExec READLINK_CMD /usr/bin/readlink readlink ++ Nm=READLINK_CMD ++ confPath=/usr/bin/readlink ++ execNm=readlink ++ eval READLINK_CMD=/usr/bin/readlink +++ READLINK_CMD=/usr/bin/readlink ++ '[' '!' -x /usr/bin/readlink ']' ++ unset Nm confPath execNm ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec ++ '[' -f /proc/909/exe ']' +++ /usr/bin/readlink /proc/909/exe ++ my_shell=/usr/bin/bash +++ /usr/bin/expr /usr/bin/bash : '-*\(.*\)' ++ my_shell=/usr/bin/bash +++ /usr/bin/basename /usr/bin/bash ++ my_shell=bash ++ case ${my_shell} in ++ '[' -f /usr/share/lmod/lmod/init/bash ']' ++ . /usr/share/lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/share/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT LMOD_ALLOW_ROOT_USE READLINK_CMD + module load mpi/openmpi-x86_64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + export OMPI_MCA_rmaps_base_oversubscribe=1 + OMPI_MCA_rmaps_base_oversubscribe=1 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/bin:/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/lib/python3.12/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/LFPy-2.3/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=2 + /usr/bin/pytest LFPy/test/ ============================= test session starts ============================== platform linux -- Python 3.12.0b4, pytest-7.3.2, pluggy-1.0.0 rootdir: /builddir/build/BUILD/LFPy-2.3 collected 305 items LFPy/test/test_alias_method.py ..... [ 1%] LFPy/test/test_cell.py ................................................. [ 17%] .................................. [ 28%] LFPy/test/test_eegmegcalc.py .................................... [ 40%] LFPy/test/test_imem.py ..... [ 42%] LFPy/test/test_inputgenerators.py . [ 42%] LFPy/test/test_lfpcalc.py ...................... [ 49%] LFPy/test/test_misc.py .. [ 50%] LFPy/test/test_morphology_import.py . [ 50%] LFPy/test/test_network.py ........ [ 53%] LFPy/test/test_networkcell.py .......................................... [ 67%] ............... [ 72%] LFPy/test/test_pointprocess.py ........... [ 75%] LFPy/test/test_recextelectrode.py ............... [ 80%] LFPy/test/test_templatecell.py ......................................... [ 94%] ................ [ 99%] LFPy/test/test_tools.py .. [100%] =============================== warnings summary =============================== LFPy/test/test_cell.py::testCell::test_cell_get_axial_currents_from_vmem_12 LFPy/test/test_cell.py::testCell::test_get_multi_current_dipole_moments_04 LFPy/test/test_eegmegcalc.py::testInfiniteVolumeConductor::test_get_multi_dipole_potential01 /builddir/build/BUILD/LFPy-2.3/LFPy/cell.py:182: UserWarning: 0 sections detected! Consider setting 'delete_sections=True' warn(mssg) LFPy/test/test_cell.py::testCell::test_cell_get_axial_currents_from_vmem_13 LFPy/test/test_eegmegcalc.py::testInfiniteVolumeConductor::test_get_multi_dipole_potential02 /builddir/build/BUILD/LFPy-2.3/LFPy/cell.py:182: UserWarning: 4 sections detected! Consider setting 'delete_sections=True' warn(mssg) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================== 305 passed, 5 warnings in 79.02s (0:01:19) ================== + '[' '!' -f /builddir/build/BUILD/python-lfpy-2.3-2.fc39.x86_64-pyproject-modules ']' + PATH=/builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/bin:/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/lib/python3.12/site-packages + _PYTHONSITE=/builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/lib/python3.12/site-packages + PYTHONDONTWRITEBYTECODE=1 + /usr/bin/python3 -sP /usr/lib/rpm/redhat/import_all_modules.py -f /builddir/build/BUILD/python-lfpy-2.3-2.fc39.x86_64-pyproject-modules -e '*x86_64*' -e '*test*' Check import: LFPy Warning: no DISPLAY environment variable. --No graphics will be displayed. Check import: LFPy.alias_method Check import: LFPy.cell Check import: LFPy.eegmegcalc Check import: LFPy.inputgenerators Check import: LFPy.network Check import: LFPy.pointprocess Check import: LFPy.run_simulation Check import: LFPy.templatecell Check import: LFPy.tools Check import: LFPy.version + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ LMOD_ALLOW_ROOT_USE=yes ++ '[' -n '' ']' ++ '[' yes '!=' yes ']' ++ '[' -z /usr/share/modulefiles ']' ++ findExec READLINK_CMD /usr/bin/readlink readlink ++ Nm=READLINK_CMD ++ confPath=/usr/bin/readlink ++ execNm=readlink ++ eval READLINK_CMD=/usr/bin/readlink +++ READLINK_CMD=/usr/bin/readlink ++ '[' '!' -x /usr/bin/readlink ']' ++ unset Nm confPath execNm ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec ++ '[' -f /proc/909/exe ']' +++ /usr/bin/readlink /proc/909/exe ++ my_shell=/usr/bin/bash +++ /usr/bin/expr /usr/bin/bash : '-*\(.*\)' ++ my_shell=/usr/bin/bash +++ /usr/bin/basename /usr/bin/bash ++ my_shell=bash ++ case ${my_shell} in ++ '[' -f /usr/share/lmod/lmod/init/bash ']' ++ . /usr/share/lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/share/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT LMOD_ALLOW_ROOT_USE READLINK_CMD + module unload mpi/openmpi-x86_64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + RPM_EC=0 ++ jobs -p + exit 0 Processing files: python3-lfpy-2.3-2.fc39.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.qieIFq + umask 022 + cd /builddir/build/BUILD + cd LFPy-2.3 + DOCDIR=/builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/share/doc/python3-lfpy + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/share/doc/python3-lfpy + cp -pr /builddir/build/BUILD/LFPy-2.3/README.md /builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64/usr/share/doc/python3-lfpy + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-lfpy = 2.3-2.fc39 python3-lfpy = 2.3-2.fc39 python3-lfpy(x86-64) = 2.3-2.fc39 python3.12-lfpy = 2.3-2.fc39 python3.12dist(lfpy) = 2.3 python3dist(lfpy) = 2.3 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) python(abi) = 3.12 python3.12dist(cython) >= 0.20 python3.12dist(h5py) >= 2.5 python3.12dist(lfpykit) >= 0.5 python3.12dist(neuron) >= 7.7.2 python3.12dist(numpy) >= 1.8 python3.12dist(scipy) >= 0.14 rtld(GNU_HASH) Processing files: python-lfpy-debugsource-2.3-2.fc39.x86_64 Provides: python-lfpy-debugsource = 2.3-2.fc39 python-lfpy-debugsource(x86-64) = 2.3-2.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-lfpy-debuginfo-2.3-2.fc39.x86_64 Provides: debuginfo(build-id) = 062389c3e6cf0b3b64b8dfae6578bbd1d60fc5f8 debuginfo(build-id) = a8cd7cbab32190b65af6ebc343049deb042db16e python-lfpy-debuginfo = 2.3-2.fc39 python3-lfpy-debuginfo = 2.3-2.fc39 python3-lfpy-debuginfo(x86-64) = 2.3-2.fc39 python3.12-lfpy-debuginfo = 2.3-2.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: python-lfpy-debugsource(x86-64) = 2.3-2.fc39 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64 Wrote: /builddir/build/RPMS/python-lfpy-debugsource-2.3-2.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/python3-lfpy-2.3-2.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/python3-lfpy-debuginfo-2.3-2.fc39.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.PrqDR8 + umask 022 + cd /builddir/build/BUILD + cd LFPy-2.3 + /usr/bin/rm -rf /builddir/build/BUILDROOT/python-lfpy-2.3-2.fc39.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.SAZbEg + umask 022 + cd /builddir/build/BUILD + rm -rf LFPy-2.3 LFPy-2.3.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0