Warning: Permanently added '54.205.188.144' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6866239-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 0.70 PID: 6029 Logging PID: 6030 Task: {'appstream': False, 'background': True, 'build_id': 6866239, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'b4a714875196287f06ff731f4a85b6b8bc2a47d9', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/scipy-1.10.0/snakemake', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'snakemake', 'package_version': '7.32.4-3', 'project_dirname': 'scipy-1.10.0', 'project_name': 'scipy-1.10.0', 'project_owner': 'psimovec', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/scipy-1.10.0/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/scipy-1.10.0--https://src.fedoraproject.org/user/music', 'source_json': {}, 'source_type': None, 'submitter': 'https://src.fedoraproject.org/user/music', 'tags': [], 'task_id': '6866239-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/scipy-1.10.0/snakemake /var/lib/copr-rpmbuild/workspace/workdir-rtp76t38/snakemake --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/scipy-1.10.0/snakemake', '/var/lib/copr-rpmbuild/workspace/workdir-rtp76t38/snakemake', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-rtp76t38/snakemake'... Running: git checkout b4a714875196287f06ff731f4a85b6b8bc2a47d9 -- cmd: ['git', 'checkout', 'b4a714875196287f06ff731f4a85b6b8bc2a47d9', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-rtp76t38/snakemake rc: 0 stdout: stderr: Note: switching to 'b4a714875196287f06ff731f4a85b6b8bc2a47d9'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at b4a7148 automatic import of snakemake Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-rtp76t38/snakemake rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading snakemake-7.32.4.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o snakemake-7.32.4.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/scipy-1.10.0/snakemake/snakemake-7.32.4.tar.gz/md5/2d7cd0faf40a8ca3c6e47f214536d1c9/snakemake-7.32.4.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated 100 8677k 100 8677k 0 0 99.6M 0 --:--:-- --:--:-- --:--:-- 100M INFO: Reading stdout from command: md5sum snakemake-7.32.4.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-rtp76t38/snakemake/snakemake.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-rtp76t38/snakemake --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1704460447.820331 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.4 starting (python version = 3.11.3, NVR = mock-5.4-1.fc38), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-rtp76t38/snakemake/snakemake.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-rtp76t38/snakemake --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1704460447.820331 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-rtp76t38/snakemake/snakemake.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.4 INFO: Mock Version: 5.4 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1704460447.820331/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1704460447.820331/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/c069b2feab839a2711b6a9fdd2d87873fa2700a4173b6f4506bb0003ffe7e5d2/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/c069b2feab839a2711b6a9fdd2d87873fa2700a4173b6f4506bb0003ffe7e5d2/merged) with podman image umount INFO: Using 'dnf' instead of 'dnf5' for bootstrap chroot INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf5 tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 47 MB/s | 2.4 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 240 MB/s | 71 MB 00:00 fedora 62 MB/s | 73 MB 00:01 Last metadata expiration check: 0:00:01 ago on Fri Jan 5 13:14:26 2024. Dependencies resolved. ========================================================================================================== Package Arch Version Repository Size ========================================================================================================== Installing: dnf5 x86_64 5.1.10-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 523 k dnf5-plugins x86_64 5.1.10-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 328 k Installing dependencies: fmt x86_64 10.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 129 k libdnf5 x86_64 5.1.10-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 925 k libdnf5-cli x86_64 5.1.10-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 216 k sdbus-cpp x86_64 1.4.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 109 k Transaction Summary ========================================================================================================== Install 6 Packages Total download size: 2.2 M Installed size: 6.1 M Downloading Packages: (1/6): fmt-10.1.1-1.fc40.x86_64.rpm 5.5 MB/s | 129 kB 00:00 (2/6): dnf5-5.1.10-2.fc40.x86_64.rpm 19 MB/s | 523 kB 00:00 (3/6): dnf5-plugins-5.1.10-2.fc40.x86_64.rpm 11 MB/s | 328 kB 00:00 (4/6): libdnf5-5.1.10-2.fc40.x86_64.rpm 113 MB/s | 925 kB 00:00 (5/6): libdnf5-cli-5.1.10-2.fc40.x86_64.rpm 41 MB/s | 216 kB 00:00 (6/6): sdbus-cpp-1.4.0-1.fc40.x86_64.rpm 26 MB/s | 109 kB 00:00 -------------------------------------------------------------------------------- Total 57 MB/s | 2.2 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : fmt-10.1.1-1.fc40.x86_64 1/6 Installing : libdnf5-5.1.10-2.fc40.x86_64 2/6 Installing : libdnf5-cli-5.1.10-2.fc40.x86_64 3/6 Installing : dnf5-5.1.10-2.fc40.x86_64 4/6 Installing : sdbus-cpp-1.4.0-1.fc40.x86_64 5/6 Installing : dnf5-plugins-5.1.10-2.fc40.x86_64 6/6 Running scriptlet: dnf5-plugins-5.1.10-2.fc40.x86_64 6/6 Installed: dnf5-5.1.10-2.fc40.x86_64 dnf5-plugins-5.1.10-2.fc40.x86_64 fmt-10.1.1-1.fc40.x86_64 libdnf5-5.1.10-2.fc40.x86_64 libdnf5-cli-5.1.10-2.fc40.x86_64 sdbus-cpp-1.4.0-1.fc40.x86_64 Complete! INFO: Switching package manager from dnf to the dnf5 (direct choice) Finish(bootstrap): installing dnf5 tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1704460447.820331/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1-2.fc40.x86_64 rpm-sequoia-1.5.0-2.fc40.x86_64 python3-dnf-4.18.2-1.fc40.noarch yum-4.18.2-1.fc40.noarch dnf5-5.1.10-2.fc40.x86_64 dnf5-plugins-5.1.10-2.fc40.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: fedora 100% | 35.4 MiB/s | 20.2 MiB | 00m01s Copr repository 100% | 11.8 MiB/s | 399.1 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 143.0 MiB/s | 17.0 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.21-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 8.2 MiB bzip2 x86_64 1.0.8-16.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 91.5 KiB coreutils x86_64 9.4-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.6 MiB cpio x86_64 2.14-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB diffutils x86_64 3.10-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB fedora-release-common noarch 40-0.26 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 19.0 KiB findutils x86_64 1:4.9.0-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB gawk x86_64 5.2.2-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB glibc-minimal-langpack x86_64 2.38.9000-30.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B grep x86_64 3.11-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB gzip x86_64 1.12-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 372.0 KiB info x86_64 7.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 373.6 KiB patch x86_64 2.7.6-22.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 254.6 KiB redhat-rpm-config noarch 274-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 180.6 KiB rpm-build x86_64 4.19.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 181.2 KiB sed x86_64 4.8-14.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 797.8 KiB shadow-utils x86_64 2:4.14.0-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.0 MiB tar x86_64 2:1.35-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB unzip x86_64 6.0-62.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 394.6 KiB util-linux x86_64 2.39.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.5 MiB which x86_64 2.21-40.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 80.1 KiB xz x86_64 5.4.5-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 MiB Installing dependencies: alternatives x86_64 1.25-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 62.2 KiB ansible-srpm-macros noarch 1-11.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 35.5 KiB audit-libs x86_64 3.1.2-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 307.1 KiB authselect x86_64 1.4.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 156.5 KiB authselect-libs x86_64 1.4.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 987.3 KiB basesystem noarch 11-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B binutils x86_64 2.41-20.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 26.6 MiB binutils-gold x86_64 2.41-20.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 MiB bzip2-libs x86_64 1.0.8-16.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 80.6 KiB ca-certificates noarch 2023.2.62_v7.0.401-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB coreutils-common x86_64 9.4-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.4 MiB cracklib x86_64 2.9.11-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 246.6 KiB crypto-policies noarch 20231204-1.git1e3a2e4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 149.3 KiB curl x86_64 8.5.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 826.3 KiB cyrus-sasl-lib x86_64 2.1.28-11.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB debugedit x86_64 5.0-12.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 198.8 KiB dwz x86_64 0.15-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 282.9 KiB ed x86_64 1.19-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 140.2 KiB efi-srpm-macros noarch 5-9.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.1 KiB elfutils x86_64 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.8 MiB elfutils-debuginfod-client x86_64 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 60.7 KiB elfutils-default-yama-scope noarch 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 KiB elfutils-libelf x86_64 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB elfutils-libs x86_64 0.190-4.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 690.0 KiB fedora-gpg-keys noarch 40-0.2 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 123.2 KiB fedora-release noarch 40-0.26 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 0.0 B fedora-release-identity-basic noarch 40-0.26 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 694.0 B fedora-repos noarch 40-0.2 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 4.9 KiB fedora-repos-rawhide noarch 40-0.2 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.2 KiB file x86_64 5.45-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 103.4 KiB file-libs x86_64 5.45-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.9 MiB filesystem x86_64 3.18-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 106.0 B fonts-srpm-macros noarch 1:2.0.5-12.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 55.3 KiB forge-srpm-macros noarch 0.2.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37.4 KiB fpc-srpm-macros noarch 1.3-8.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 144.0 B gdb-minimal x86_64 14.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13.4 MiB gdbm x86_64 1:1.23-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 472.5 KiB gdbm-libs x86_64 1:1.23-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 125.7 KiB ghc-srpm-macros noarch 1.6.1-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 369.0 B glibc x86_64 2.38.9000-30.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.7 MiB glibc-common x86_64 2.38.9000-30.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB glibc-gconv-extra x86_64 2.38.9000-30.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 7.8 MiB gmp x86_64 1:6.2.1-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 798.5 KiB gnat-srpm-macros noarch 6-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 KiB go-srpm-macros noarch 3.3.1-1.fc40 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB pam-libs x86_64 1.5.3-9.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 134.8 KiB pcre2 x86_64 10.42-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 633.4 KiB pcre2-syntax noarch 10.42-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 235.1 KiB perl-srpm-macros noarch 1-51.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 861.0 B pkgconf x86_64 1.9.5-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 83.7 KiB pkgconf-m4 noarch 1.9.5-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 13.9 KiB pkgconf-pkg-config x86_64 1.9.5-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 989.0 B popt x86_64 1.19-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 136.8 KiB publicsuffix-list-dafsa noarch 20230812-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 66.7 KiB pyproject-srpm-macros noarch 1.11.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 KiB python-srpm-macros noarch 3.12-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 50.1 KiB qt5-srpm-macros noarch 5.15.12-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 492.0 B qt6-srpm-macros noarch 6.6.1-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 456.0 B readline x86_64 8.2-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 493.0 KiB rpm x86_64 4.19.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.0 MiB rpm-build-libs x86_64 4.19.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 202.3 KiB rpm-libs x86_64 4.19.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 749.7 KiB rpm-sequoia x86_64 1.5.0-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.3 MiB rust-srpm-macros noarch 25.2-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.1 KiB setup noarch 2.14.5-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 720.4 KiB sqlite-libs x86_64 3.44.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB systemd-libs x86_64 255.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.0 MiB util-linux-core x86_64 2.39.3-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB xxhash-libs x86_64 0.8.2-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 88.4 KiB xz-libs x86_64 5.4.5-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 209.7 KiB zig-srpm-macros noarch 1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 KiB zip x86_64 3.0-39.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 711.2 KiB zlib-ng-compat x86_64 2.1.5-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 137.8 KiB zstd x86_64 1.5.5-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 153 packages Total size of inbound packages is 52 MiB. Need to download 52 MiB. After this operation 179 MiB will be used (install 179 MiB, remove 0 B). [ 1/153] bzip2-0:1.0.8-16.fc39.x86_64 100% | 2.0 MiB/s | 52.3 KiB | 00m00s [ 2/153] cpio-0:2.14-5.fc40.x86_64 100% | 38.0 MiB/s | 272.6 KiB | 00m00s [ 3/153] coreutils-0:9.4-1.fc40.x86_64 100% | 30.1 MiB/s | 1.1 MiB | 00m00s [ 4/153] bash-0:5.2.21-2.fc40.x86_64 100% | 44.6 MiB/s | 1.8 MiB | 00m00s [ 5/153] fedora-release-common-0:40-0. 100% | 6.6 MiB/s | 20.2 KiB | 00m00s [ 6/153] diffutils-0:3.10-3.fc39.x86_6 100% | 42.3 MiB/s | 389.6 KiB | 00m00s [ 7/153] findutils-1:4.9.0-6.fc40.x86_ 100% | 67.2 MiB/s | 482.0 KiB | 00m00s [ 8/153] glibc-minimal-langpack-0:2.38 100% | 21.7 MiB/s | 89.0 KiB | 00m00s [ 9/153] gawk-0:5.2.2-2.fc39.x86_64 100% | 87.9 MiB/s | 1.1 MiB | 00m00s [ 10/153] gzip-0:1.12-6.fc39.x86_64 100% | 25.9 MiB/s | 159.1 KiB | 00m00s [ 11/153] grep-0:3.11-5.fc40.x86_64 100% | 46.8 MiB/s | 287.4 KiB | 00m00s [ 12/153] info-0:7.1-1.fc40.x86_64 100% | 45.0 MiB/s | 184.5 KiB | 00m00s [ 13/153] redhat-rpm-config-0:274-1.fc4 100% | 24.1 MiB/s | 73.9 KiB | 00m00s [ 14/153] patch-0:2.7.6-22.fc39.x86_64 100% | 30.6 MiB/s | 125.4 KiB | 00m00s [ 15/153] rpm-build-0:4.19.1-2.fc40.x86 100% | 23.4 MiB/s | 71.8 KiB | 00m00s [ 16/153] sed-0:4.8-14.fc39.x86_64 100% | 58.1 MiB/s | 297.5 KiB | 00m00s [ 17/153] unzip-0:6.0-62.fc39.x86_64 100% | 30.0 MiB/s | 184.4 KiB | 00m00s [ 18/153] shadow-utils-2:4.14.0-2.fc40. 100% | 92.7 MiB/s | 1.2 MiB | 00m00s [ 19/153] tar-2:1.35-2.fc40.x86_64 100% | 75.9 MiB/s | 854.6 KiB | 00m00s [ 20/153] which-0:2.21-40.fc39.x86_64 100% | 13.6 MiB/s | 41.8 KiB | 00m00s [ 21/153] xz-0:5.4.5-1.fc40.x86_64 100% | 86.5 MiB/s | 531.3 KiB | 00m00s [ 22/153] util-linux-0:2.39.3-1.fc40.x8 100% | 101.2 MiB/s | 1.1 MiB | 00m00s [ 23/153] glibc-common-0:2.38.9000-30.f 100% | 39.7 MiB/s | 366.0 KiB | 00m00s [ 24/153] glibc-gconv-extra-0:2.38.9000 100% | 124.8 MiB/s | 1.6 MiB | 00m00s [ 25/153] glibc-0:2.38.9000-30.fc40.x86 100% | 99.4 MiB/s | 2.2 MiB | 00m00s [ 26/153] xz-libs-0:5.4.5-1.fc40.x86_64 100% | 15.1 MiB/s | 108.4 KiB | 00m00s [ 27/153] libblkid-0:2.39.3-1.fc40.x86_ 100% | 22.7 MiB/s | 116.3 KiB | 00m00s [ 28/153] audit-libs-0:3.1.2-5.fc40.x86 100% | 14.3 MiB/s | 117.1 KiB | 00m00s [ 29/153] authselect-libs-0:1.4.3-1.fc4 100% | 32.8 MiB/s | 235.0 KiB | 00m00s [ 30/153] libcap-ng-0:0.8.4-2.fc40.x86_ 100% | 10.6 MiB/s | 32.6 KiB | 00m00s [ 31/153] libfdisk-0:2.39.3-1.fc40.x86_ 100% | 39.5 MiB/s | 161.7 KiB | 00m00s [ 32/153] libmount-0:2.39.3-1.fc40.x86_ 100% | 37.7 MiB/s | 154.5 KiB | 00m00s [ 33/153] libselinux-0:3.6-2.fc40.x86_6 100% | 28.6 MiB/s | 87.8 KiB | 00m00s [ 34/153] libutempter-0:1.2.1-10.fc39.x 100% | 12.8 MiB/s | 26.3 KiB | 00m00s [ 35/153] libsmartcols-0:2.39.3-1.fc40. 100% | 21.8 MiB/s | 67.1 KiB | 00m00s [ 36/153] libuuid-0:2.39.3-1.fc40.x86_6 100% | 13.8 MiB/s | 28.2 KiB | 00m00s [ 37/153] ncurses-libs-0:6.4-8.20231001 100% | 66.0 MiB/s | 337.9 KiB | 00m00s [ 38/153] pam-0:1.5.3-9.fc40.x86_64 100% | 83.1 MiB/s | 510.7 KiB | 00m00s [ 39/153] pam-libs-0:1.5.3-9.fc40.x86_6 100% | 13.9 MiB/s | 57.0 KiB | 00m00s [ 40/153] readline-0:8.2-4.fc39.x86_64 100% | 69.2 MiB/s | 212.5 KiB | 00m00s [ 41/153] systemd-libs-0:255.1-1.fc40.x 100% | 114.4 MiB/s | 702.6 KiB | 00m00s [ 42/153] util-linux-core-0:2.39.3-1.fc 100% | 68.7 MiB/s | 492.7 KiB | 00m00s [ 43/153] zlib-ng-compat-0:2.1.5-1.fc40 100% | 18.8 MiB/s | 77.0 KiB | 00m00s [ 44/153] bzip2-libs-0:1.0.8-16.fc39.x8 100% | 13.5 MiB/s | 41.3 KiB | 00m00s [ 45/153] libacl-0:2.3.1-11.fc40.x86_64 100% | 7.7 MiB/s | 23.8 KiB | 00m00s [ 46/153] libcap-0:2.69-1.fc40.x86_64 100% | 27.0 MiB/s | 83.1 KiB | 00m00s [ 47/153] libgcc-0:13.2.1-6.fc40.x86_64 100% | 27.4 MiB/s | 112.2 KiB | 00m00s [ 48/153] libzstd-0:1.5.5-4.fc39.x86_64 100% | 60.3 MiB/s | 308.6 KiB | 00m00s [ 49/153] lz4-libs-0:1.9.4-4.fc39.x86_6 100% | 13.0 MiB/s | 66.7 KiB | 00m00s [ 50/153] libattr-0:2.5.1-9.fc40.x86_64 100% | 5.8 MiB/s | 17.7 KiB | 00m00s [ 51/153] libeconf-0:0.5.2-1.fc40.x86_6 100% | 14.7 MiB/s | 30.1 KiB | 00m00s [ 52/153] libsemanage-0:3.6-1.fc40.x86_ 100% | 37.8 MiB/s | 116.1 KiB | 00m00s [ 53/153] libxcrypt-0:4.4.36-3.fc40.x86 100% | 38.6 MiB/s | 118.5 KiB | 00m00s [ 54/153] setup-0:2.14.5-1.fc40.noarch 100% | 48.2 MiB/s | 148.1 KiB | 00m00s [ 55/153] debugedit-0:5.0-12.fc40.x86_6 100% | 10.9 MiB/s | 78.4 KiB | 00m00s [ 56/153] elfutils-0:0.190-4.fc40.x86_6 100% | 59.1 MiB/s | 544.6 KiB | 00m00s [ 57/153] elfutils-libelf-0:0.190-4.fc4 100% | 47.4 MiB/s | 194.3 KiB | 00m00s [ 58/153] file-0:5.45-1.fc40.x86_64 100% | 9.6 MiB/s | 49.2 KiB | 00m00s [ 59/153] pkgconf-pkg-config-0:1.9.5-2. 100% | 1.9 MiB/s | 9.6 KiB | 00m00s [ 60/153] popt-0:1.19-3.fc39.x86_64 100% | 8.3 MiB/s | 59.2 KiB | 00m00s [ 61/153] binutils-0:2.41-20.fc40.x86_6 100% | 178.4 MiB/s | 6.2 MiB | 00m00s [ 62/153] rpm-0:4.19.1-2.fc40.x86_64 100% | 35.6 MiB/s | 510.6 KiB | 00m00s [ 63/153] rpm-build-libs-0:4.19.1-2.fc4 100% | 6.3 MiB/s | 96.1 KiB | 00m00s [ 64/153] rpm-libs-0:4.19.1-2.fc40.x86_ 100% | 33.9 MiB/s | 312.5 KiB | 00m00s [ 65/153] zstd-0:1.5.5-4.fc39.x86_64 100% | 36.2 MiB/s | 482.3 KiB | 00m00s [ 66/153] libarchive-0:3.7.2-1.fc40.x86 100% | 79.7 MiB/s | 407.9 KiB | 00m00s [ 67/153] ansible-srpm-macros-0:1-11.fc 100% | 4.0 MiB/s | 20.7 KiB | 00m00s [ 68/153] dwz-0:0.15-3.fc39.x86_64 100% | 43.7 MiB/s | 134.1 KiB | 00m00s [ 69/153] efi-srpm-macros-0:5-9.fc39.no 100% | 7.2 MiB/s | 22.2 KiB | 00m00s [ 70/153] fonts-srpm-macros-1:2.0.5-12. 100% | 8.6 MiB/s | 26.5 KiB | 00m00s [ 71/153] forge-srpm-macros-0:0.2.0-1.f 100% | 6.0 MiB/s | 18.5 KiB | 00m00s [ 72/153] ghc-srpm-macros-0:1.6.1-3.fc4 100% | 2.6 MiB/s | 8.1 KiB | 00m00s [ 73/153] fpc-srpm-macros-0:1.3-8.fc39. 100% | 2.4 MiB/s | 7.4 KiB | 00m00s [ 74/153] kernel-srpm-macros-0:1.0-20.f 100% | 3.4 MiB/s | 10.5 KiB | 00m00s [ 75/153] go-srpm-macros-0:3.3.1-1.fc40 100% | 9.0 MiB/s | 27.7 KiB | 00m00s [ 76/153] gnat-srpm-macros-0:6-3.fc39.n 100% | 2.2 MiB/s | 8.8 KiB | 00m00s [ 77/153] ocaml-srpm-macros-0:9-1.fc40. 100% | 2.9 MiB/s | 9.0 KiB | 00m00s [ 78/153] lua-srpm-macros-0:1-9.fc39.no 100% | 2.8 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| 37.7 KiB | 00m00s [ 92/153] ed-0:1.19-4.fc39.x86_64 100% | 25.6 MiB/s | 78.6 KiB | 00m00s [ 93/153] authselect-0:1.4.3-1.fc40.x86 100% | 46.9 MiB/s | 144.1 KiB | 00m00s [ 94/153] gdbm-libs-1:1.23-4.fc39.x86_6 100% | 18.3 MiB/s | 56.1 KiB | 00m00s [ 95/153] gdbm-1:1.23-4.fc39.x86_64 100% | 48.7 MiB/s | 149.6 KiB | 00m00s [ 96/153] libnsl2-0:2.0.0-6.fc39.x86_64 100% | 9.7 MiB/s | 29.7 KiB | 00m00s [ 97/153] libpwquality-0:1.4.5-6.fc39.x 100% | 35.2 MiB/s | 108.3 KiB | 00m00s [ 98/153] libtirpc-0:1.3.4-1.rc1.fc40.x 100% | 30.5 MiB/s | 93.7 KiB | 00m00s [ 99/153] crypto-policies-0:20231204-1. 100% | 9.6 MiB/s | 68.7 KiB | 00m00s [100/153] ca-certificates-0:2023.2.62_v 100% | 93.6 MiB/s | 862.6 KiB | 00m00s [101/153] openssl-libs-1:3.1.4-1.fc40.x 100% | 155.4 MiB/s | 2.2 MiB | 00m00s [102/153] ncurses-base-0:6.4-8.20231001 100% | 12.3 MiB/s | 63.1 KiB | 00m00s [103/153] krb5-libs-0:1.21.2-2.fc40.x86 100% | 92.8 MiB/s | 760.1 KiB | 00m00s [104/153] libcom_err-0:1.47.0-2.fc39.x8 100% | 6.3 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106.5 MiB/s | 763.2 KiB | 00m00s [118/153] elfutils-libs-0:0.190-4.fc40. 100% | 50.5 MiB/s | 258.7 KiB | 00m00s [119/153] p11-kit-0:0.25.3-1.fc40.x86_6 100% | 49.6 MiB/s | 507.6 KiB | 00m00s [120/153] libstdc++-0:13.2.1-6.fc40.x86 100% | 60.3 MiB/s | 864.6 KiB | 00m00s [121/153] coreutils-common-0:9.4-1.fc40 100% | 132.7 MiB/s | 2.1 MiB | 00m00s [122/153] p11-kit-trust-0:0.25.3-1.fc40 100% | 34.5 MiB/s | 141.5 KiB | 00m00s [123/153] alternatives-0:1.25-1.fc39.x8 100% | 9.4 MiB/s | 38.5 KiB | 00m00s [124/153] elfutils-debuginfod-client-0: 100% | 7.3 MiB/s | 37.6 KiB | 00m00s [125/153] jansson-0:2.13.1-7.fc39.x86_6 100% | 10.8 MiB/s | 44.1 KiB | 00m00s [126/153] binutils-gold-0:2.41-20.fc40. 100% | 112.2 MiB/s | 804.1 KiB | 00m00s [127/153] lua-libs-0:5.4.6-3.fc39.x86_6 100% | 25.9 MiB/s | 132.7 KiB | 00m00s [128/153] rpm-sequoia-0:1.5.0-2.fc40.x8 100% | 95.3 MiB/s | 878.7 KiB | 00m00s [129/153] sqlite-libs-0:3.44.2-1.fc40.x 100% | 84.6 MiB/s | 692.7 KiB | 00m00s [130/153] libgomp-0:13.2.1-6.fc40.x86_6 100% | 52.3 MiB/s | 321.4 KiB | 00m00s [131/153] libtasn1-0:4.19.0-3.fc39.x86_ 100% | 18.1 MiB/s | 74.2 KiB | 00m00s [132/153] pcre2-syntax-0:10.42-2.fc40.n 100% | 23.3 MiB/s | 143.1 KiB | 00m00s [133/153] libffi-0:3.4.4-5.fc40.x86_64 100% | 12.8 MiB/s | 39.4 KiB | 00m00s [134/153] fedora-gpg-keys-0:40-0.2.noar 100% | 29.1 MiB/s | 119.4 KiB | 00m00s [135/153] fedora-repos-rawhide-0:40-0.2 100% | 4.4 MiB/s | 8.9 KiB | 00m00s [136/153] elfutils-default-yama-scope-0 100% | 6.3 MiB/s | 12.8 KiB | 00m00s [137/153] fedora-release-0:40-0.26.noar 100% | 4.8 MiB/s | 9.7 KiB | 00m00s [138/153] curl-0:8.5.0-1.fc40.x86_64 100% | 52.0 MiB/s | 372.9 KiB | 00m00s [139/153] xxhash-libs-0:0.8.2-1.fc39.x8 100% | 3.3 MiB/s | 37.3 KiB | 00m00s [140/153] fedora-release-identity-basic 100% | 2.6 MiB/s | 10.5 KiB | 00m00s [141/153] gdb-minimal-0:14.1-1.fc40.x86 100% | 203.4 MiB/s | 4.3 MiB | 00m00s [142/153] libcurl-0:8.5.0-1.fc40.x86_64 100% | 48.1 MiB/s | 345.1 KiB | 00m00s 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Running transaction [ 1/155] Verify package files 100% | 980.0 B/s | 153.0 B | 00m00s >>> Running pre-transaction scriptlet: filesystem-0:3.18-6.fc39.x86_64 >>> Stop pre-transaction scriptlet: filesystem-0:3.18-6.fc39.x86_64 [ 2/155] Prepare transaction 100% | 4.3 KiB/s | 153.0 B | 00m00s [ 3/155] Installing libgcc-0:13.2.1-6. 100% | 226.4 MiB/s | 231.8 KiB | 00m00s >>> Running post-install scriptlet: libgcc-0:13.2.1-6.fc40.x86_64 >>> Stop post-install scriptlet: libgcc-0:13.2.1-6.fc40.x86_64 [ 4/155] Installing crypto-policies-0: 100% | 44.4 MiB/s | 181.7 KiB | 00m00s >>> Running post-install scriptlet: crypto-policies-0:20231204-1.git1e3a2e4.fc40 >>> Stop post-install scriptlet: crypto-policies-0:20231204-1.git1e3a2e4.fc40.no [ 5/155] Installing fedora-release-ide 100% | 0.0 B/s | 952.0 B | 00m00s [ 6/155] Installing fedora-gpg-keys-0: 100% | 54.6 MiB/s | 167.6 KiB | 00m00s [ 7/155] Installing fedora-repos-rawhi 100% | 0.0 B/s | 2.4 KiB | 00m00s [ 8/155] Installing fedora-repos-0:40- 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349.2 MiB/s | 715.1 KiB | 00m00s [ 75/155] Installing gdbm-1:1.23-4.fc39 100% | 233.1 MiB/s | 477.4 KiB | 00m00s [ 76/155] Installing cyrus-sasl-lib-0:2 100% | 386.8 MiB/s | 2.3 MiB | 00m00s [ 77/155] Installing zstd-0:1.5.5-4.fc3 100% | 407.7 MiB/s | 1.6 MiB | 00m00s [ 78/155] Installing libfdisk-0:2.39.3- 100% | 375.0 MiB/s | 384.0 KiB | 00m00s [ 79/155] Installing bzip2-0:1.0.8-16.f 100% | 93.7 MiB/s | 96.0 KiB | 00m00s [ 80/155] Installing libxml2-0:2.12.3-1 100% | 441.3 MiB/s | 1.8 MiB | 00m00s [ 81/155] Installing sqlite-libs-0:3.44 100% | 350.1 MiB/s | 1.4 MiB | 00m00s [ 82/155] Installing ed-0:1.19-4.fc39.x 100% | 139.2 MiB/s | 142.5 KiB | 00m00s [ 83/155] Installing patch-0:2.7.6-22.f 100% | 250.1 MiB/s | 256.1 KiB | 00m00s [ 84/155] Installing elfutils-default-y 100% | 340.5 KiB/s | 2.0 KiB | 00m00s >>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.190-4.fc40.n >>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.190-4.fc40.noar [ 85/155] Installing cpio-0:2.14-5.fc40 100% | 206.1 MiB/s | 1.0 MiB | 00m00s [ 86/155] Installing diffutils-0:3.10-3 100% | 263.0 MiB/s | 1.6 MiB | 00m00s [ 87/155] Installing libpkgconf-0:1.9.5 100% | 77.3 MiB/s | 79.2 KiB | 00m00s [ 88/155] Installing pkgconf-0:1.9.5-2. 100% | 84.2 MiB/s | 86.3 KiB | 00m00s [ 89/155] Installing keyutils-libs-0:1. 100% | 0.0 B/s | 55.7 KiB | 00m00s [ 90/155] Installing libverto-0:0.3.2-6 100% | 0.0 B/s | 31.2 KiB | 00m00s [ 91/155] Installing libsigsegv-0:2.14- 100% | 0.0 B/s | 50.8 KiB | 00m00s [ 92/155] Installing gawk-0:5.2.2-2.fc3 100% | 289.3 MiB/s | 1.7 MiB | 00m00s [ 93/155] Installing libgomp-0:13.2.1-6 100% | 475.7 MiB/s | 487.1 KiB | 00m00s [ 94/155] Installing libffi-0:3.4.4-5.f 100% | 80.9 MiB/s | 82.9 KiB | 00m00s [ 95/155] Installing p11-kit-0:0.25.3-1 100% | 301.2 MiB/s | 2.4 MiB | 00m00s [ 96/155] Installing p11-kit-trust-0:0. 100% | 50.0 MiB/s | 461.1 KiB | 00m00s >>> Running post-install scriptlet: p11-kit-trust-0:0.25.3-1.fc40.x86_64 >>> Stop post-install scriptlet: p11-kit-trust-0:0.25.3-1.fc40.x86_64 [ 97/155] Installing openssl-libs-1:3.1 100% | 371.1 MiB/s | 7.8 MiB | 00m00s [ 98/155] Installing coreutils-0:9.4-1. 100% | 284.4 MiB/s | 5.7 MiB | 00m00s >>> Running pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.fc40.n >>> Stop pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.fc40.noar [ 99/155] Installing ca-certificates-0: 100% | 4.1 MiB/s | 2.3 MiB | 00m01s >>> Running post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.fc40. >>> Stop post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.fc40.noa [100/155] Installing krb5-libs-0:1.21.2 100% | 297.5 MiB/s | 2.4 MiB | 00m00s [101/155] Installing libtirpc-0:1.3.4-1 100% | 199.7 MiB/s | 204.5 KiB | 00m00s [102/155] Installing gzip-0:1.12-6.fc39 100% | 184.3 MiB/s | 377.5 KiB | 00m00s >>> Running pre-install scriptlet: authselect-libs-0:1.4.3-1.fc40.x86_64 >>> Stop pre-install scriptlet: authselect-libs-0:1.4.3-1.fc40.x86_64 [103/155] Installing authselect-libs-0: 100% | 195.8 MiB/s | 1.0 MiB | 00m00s [104/155] Installing authselect-0:1.4.3 100% | 78.5 MiB/s | 160.8 KiB | 00m00s [105/155] Installing cracklib-0:2.9.11- 100% | 84.0 MiB/s | 257.9 KiB | 00m00s [106/155] Installing libpwquality-0:1.4 100% | 104.9 MiB/s | 429.8 KiB | 00m00s [107/155] Installing libnsl2-0:2.0.0-6. 100% | 57.6 MiB/s | 59.0 KiB | 00m00s [108/155] Installing pam-0:1.5.3-9.fc40 100% | 163.0 MiB/s | 1.8 MiB | 00m00s [109/155] Installing libssh-0:0.10.6-2. 100% | 253.6 MiB/s | 519.3 KiB | 00m00s [110/155] Installing libarchive-0:3.7.2 100% | 300.9 MiB/s | 924.5 KiB | 00m00s [111/155] Installing rpm-sequoia-0:1.5. 100% | 384.3 MiB/s | 2.3 MiB | 00m00s [112/155] Installing rpm-libs-0:4.19.1- 100% | 366.8 MiB/s | 751.3 KiB | 00m00s [113/155] Installing libevent-0:2.1.12- 100% | 440.9 MiB/s | 903.0 KiB | 00m00s [114/155] Installing openldap-0:2.6.6-1 100% | 315.1 MiB/s | 645.3 KiB | 00m00s [115/155] Installing xxhash-libs-0:0.8. 100% | 0.0 B/s | 89.8 KiB | 00m00s [116/155] Installing libbrotli-0:1.1.0- 100% | 269.4 MiB/s | 827.6 KiB | 00m00s [117/155] Installing libnghttp2-0:1.58. 100% | 167.2 MiB/s | 171.2 KiB | 00m00s [118/155] Installing libcurl-0:8.5.0-1. 100% | 383.6 MiB/s | 785.7 KiB | 00m00s [119/155] Installing elfutils-debuginfo 100% | 61.2 MiB/s | 62.7 KiB | 00m00s [120/155] Installing elfutils-libs-0:0. 100% | 337.7 MiB/s | 691.6 KiB | 00m00s [121/155] Installing binutils-gold-0:2. 100% | 188.2 MiB/s | 2.1 MiB | 00m00s >>> Running post-install scriptlet: binutils-gold-0:2.41-20.fc40.x86_64 >>> Stop post-install scriptlet: binutils-gold-0:2.41-20.fc40.x86_64 [122/155] Installing binutils-0:2.41-20 100% | 397.5 MiB/s | 26.6 MiB | 00m00s >>> Running post-install scriptlet: binutils-0:2.41-20.fc40.x86_64 >>> Stop post-install scriptlet: binutils-0:2.41-20.fc40.x86_64 [123/155] Installing elfutils-0:0.190-4 100% | 401.8 MiB/s | 2.8 MiB | 00m00s [124/155] Installing gdb-minimal-0:14.1 100% | 433.0 MiB/s | 13.4 MiB | 00m00s [125/155] Installing debugedit-0:5.0-12 100% | 196.8 MiB/s | 201.5 KiB | 00m00s [126/155] Installing rpm-build-libs-0:4 100% | 198.4 MiB/s | 203.2 KiB | 00m00s [127/155] Installing curl-0:8.5.0-1.fc4 100% | 73.6 MiB/s | 828.6 KiB | 00m00s >>> Running pre-install scriptlet: rpm-0:4.19.1-2.fc40.x86_64 >>> Stop pre-install scriptlet: rpm-0:4.19.1-2.fc40.x86_64 [128/155] Installing rpm-0:4.19.1-2.fc4 100% | 171.2 MiB/s | 2.4 MiB | 00m00s [129/155] Installing efi-srpm-macros-0: 100% | 0.0 B/s | 41.2 KiB | 00m00s [130/155] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [131/155] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [132/155] Installing pkgconf-m4-0:1.9.5 100% | 0.0 B/s | 14.3 KiB | 00m00s [133/155] Installing pkgconf-pkg-config 100% | 0.0 B/s | 1.8 KiB | 00m00s [134/155] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.8 KiB | 00m00s [135/155] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 732.0 B | 00m00s [136/155] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 768.0 B | 00m00s [137/155] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [138/155] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [139/155] Installing openblas-srpm-macr 100% | 0.0 B/s | 384.0 B | 00m00s [140/155] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [141/155] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [142/155] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [143/155] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 648.0 B | 00m00s [144/155] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [145/155] Installing ansible-srpm-macro 100% | 0.0 B/s | 36.1 KiB | 00m00s [146/155] Installing fonts-srpm-macros- 100% | 0.0 B/s | 56.5 KiB | 00m00s [147/155] Installing forge-srpm-macros- 100% | 0.0 B/s | 38.6 KiB | 00m00s [148/155] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 61.6 KiB | 00m00s [149/155] Installing python-srpm-macros 100% | 0.0 B/s | 51.3 KiB | 00m00s [150/155] Installing redhat-rpm-config- 100% | 182.4 MiB/s | 186.8 KiB | 00m00s [151/155] Installing rpm-build-0:4.19.1 100% | 92.5 MiB/s | 189.4 KiB | 00m00s [152/155] Installing pyproject-srpm-mac 100% | 2.0 MiB/s | 2.1 KiB | 00m00s [153/155] Installing util-linux-0:2.39. 100% | 240.9 MiB/s | 3.6 MiB | 00m00s [154/155] Installing which-0:2.21-40.fc 100% | 80.4 MiB/s | 82.3 KiB | 00m00s [155/155] Installing info-0:7.1-1.fc40. 100% | 488.9 KiB/s | 374.0 KiB | 00m01s >>> Running post-transaction scriptlet: filesystem-0:3.18-6.fc39.x86_64 >>> Stop post-transaction scriptlet: filesystem-0:3.18-6.fc39.x86_64 >>> Running post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.f >>> Stop post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-4.fc40 >>> Running post-transaction scriptlet: authselect-libs-0:1.4.3-1.fc40.x86_64 >>> Stop post-transaction scriptlet: authselect-libs-0:1.4.3-1.fc40.x86_64 >>> Running post-transaction scriptlet: rpm-0:4.19.1-2.fc40.x86_64 >>> Stop post-transaction scriptlet: rpm-0:4.19.1-2.fc40.x86_64 >>> Running trigger-install scriptlet: glibc-common-0:2.38.9000-30.fc40.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.38.9000-30.fc40.x86_64 >>> Running trigger-install scriptlet: info-0:7.1-1.fc40.x86_64 >>> Stop trigger-install scriptlet: info-0:7.1-1.fc40.x86_64 Warning: skipped PGP checks for 153 package(s). Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.25-1.fc39.x86_64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-5.fc40.x86_64 authselect-1.4.3-1.fc40.x86_64 authselect-libs-1.4.3-1.fc40.x86_64 basesystem-11-18.fc39.noarch bash-5.2.21-2.fc40.x86_64 binutils-2.41-20.fc40.x86_64 binutils-gold-2.41-20.fc40.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.62_v7.0.401-4.fc40.noarch coreutils-9.4-1.fc40.x86_64 coreutils-common-9.4-1.fc40.x86_64 cpio-2.14-5.fc40.x86_64 cracklib-2.9.11-2.fc39.x86_64 crypto-policies-20231204-1.git1e3a2e4.fc40.noarch curl-8.5.0-1.fc40.x86_64 cyrus-sasl-lib-2.1.28-11.fc39.x86_64 debugedit-5.0-12.fc40.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.190-4.fc40.x86_64 elfutils-debuginfod-client-0.190-4.fc40.x86_64 elfutils-default-yama-scope-0.190-4.fc40.noarch elfutils-libelf-0.190-4.fc40.x86_64 elfutils-libs-0.190-4.fc40.x86_64 fedora-gpg-keys-40-0.2.noarch fedora-release-40-0.26.noarch fedora-release-common-40-0.26.noarch fedora-release-identity-basic-40-0.26.noarch fedora-repos-40-0.2.noarch fedora-repos-rawhide-40-0.2.noarch file-5.45-1.fc40.x86_64 file-libs-5.45-1.fc40.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-4.9.0-6.fc40.x86_64 fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.2.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-14.1-1.fc40.x86_64 gdbm-1.23-4.fc39.x86_64 gdbm-libs-1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-3.fc40.noarch glibc-2.38.9000-30.fc40.x86_64 glibc-common-2.38.9000-30.fc40.x86_64 glibc-gconv-extra-2.38.9000-30.fc40.x86_64 glibc-minimal-langpack-2.38.9000-30.fc40.x86_64 gmp-6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.3.1-1.fc40.noarch grep-3.11-5.fc40.x86_64 gzip-1.12-6.fc39.x86_64 info-7.1-1.fc40.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.3-1.fc40.x86_64 krb5-libs-1.21.2-2.fc40.x86_64 libacl-2.3.1-11.fc40.x86_64 libarchive-3.7.2-1.fc40.x86_64 libattr-2.5.1-9.fc40.x86_64 libblkid-2.39.3-1.fc40.x86_64 libbrotli-1.1.0-1.fc40.x86_64 libcap-2.69-1.fc40.x86_64 libcap-ng-0.8.4-2.fc40.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.5.0-1.fc40.x86_64 libeconf-0.5.2-1.fc40.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.3-1.fc40.x86_64 libffi-3.4.4-5.fc40.x86_64 libgcc-13.2.1-6.fc40.x86_64 libgomp-13.2.1-6.fc40.x86_64 libidn2-2.3.4-3.fc39.x86_64 libmount-2.39.3-1.fc40.x86_64 libnghttp2-1.58.0-1.fc40.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.6-2.fc40.x86_64 libsemanage-3.6-1.fc40.x86_64 libsepol-3.6-1.fc40.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.3-1.fc40.x86_64 libssh-0.10.6-2.fc40.x86_64 libssh-config-0.10.6-2.fc40.noarch libstdc++-13.2.1-6.fc40.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.4-1.rc1.fc40.x86_64 libunistring-1.1-5.fc40.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.3-1.fc40.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-3.fc40.x86_64 libxml2-2.12.3-1.fc40.x86_64 libzstd-1.5.5-4.fc39.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.1-1.fc40.x86_64 ncurses-base-6.4-8.20231001.fc40.noarch ncurses-libs-6.4-8.20231001.fc40.x86_64 ocaml-srpm-macros-9-1.fc40.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-3.1.4-1.fc40.x86_64 p11-kit-0.25.3-1.fc40.x86_64 p11-kit-trust-0.25.3-1.fc40.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-9.fc40.x86_64 pam-libs-1.5.3-9.fc40.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-2.fc40.x86_64 pcre2-syntax-10.42-2.fc40.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.11.0-1.fc40.noarch python-srpm-macros-3.12-5.fc40.noarch qt5-srpm-macros-5.15.12-1.fc40.noarch qt6-srpm-macros-6.6.1-3.fc40.noarch readline-8.2-4.fc39.x86_64 redhat-rpm-config-274-1.fc40.noarch rpm-4.19.1-2.fc40.x86_64 rpm-build-4.19.1-2.fc40.x86_64 rpm-build-libs-4.19.1-2.fc40.x86_64 rpm-libs-4.19.1-2.fc40.x86_64 rpm-sequoia-1.5.0-2.fc40.x86_64 rust-srpm-macros-25.2-2.fc40.noarch sed-4.8-14.fc39.x86_64 setup-2.14.5-1.fc40.noarch shadow-utils-4.14.0-2.fc40.x86_64 sqlite-libs-3.44.2-1.fc40.x86_64 systemd-libs-255.1-1.fc40.x86_64 tar-1.35-2.fc40.x86_64 unzip-6.0-62.fc39.x86_64 util-linux-2.39.3-1.fc40.x86_64 util-linux-core-2.39.3-1.fc40.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.5-1.fc40.x86_64 xz-libs-5.4.5-1.fc40.x86_64 zig-srpm-macros-1-1.fc40.noarch zip-3.0-39.fc40.x86_64 zlib-ng-compat-2.1.5-1.fc40.x86_64 zstd-1.5.5-4.fc39.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1704412800 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1704460447.820331/root/var/log/dnf5.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-rtp76t38/snakemake/snakemake.spec) Config(child) 0 minutes 50 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/snakemake-7.32.4-3.fc40.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1704460447.820331/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1704460447.820331/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1704460447.820331/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.1-2.fc40.x86_64 rpm-sequoia-1.5.0-2.fc40.x86_64 python3-dnf-4.18.2-1.fc40.noarch yum-4.18.2-1.fc40.noarch dnf5-5.1.10-2.fc40.x86_64 dnf5-plugins-5.1.10-2.fc40.x86_64 Finish: chroot init Start: build phase for snakemake-7.32.4-3.fc40.src.rpm Start: build setup for snakemake-7.32.4-3.fc40.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1704412800 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.src.rpm Updating and loading repositories: Additional repo http_kojipkgs_fedorapr 100% | 242.6 KiB/s | 4.1 KiB | 00m00s Copr repository 100% | 82.8 KiB/s | 2.2 KiB | 00m00s fedora 100% | 660.4 KiB/s | 23.1 KiB | 00m00s Repositories loaded. 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.7 MiB texlive-titlesec noarch 11:svn59845-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 97.8 KiB texlive-tools noarch 11:svn64892-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 403.2 KiB texlive-txfonts noarch 11:svn15878.0-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB texlive-ucharcat noarch 11:svn38907-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 10.2 KiB texlive-ucs noarch 11:svn64114-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.4 MiB texlive-underscore noarch 11:svn18261.0-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 19.3 KiB texlive-unicode-data noarch 11:svn64423-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.1 MiB texlive-unicode-math noarch 11:svn61719-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 517.2 KiB 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texlive-zapfchan noarch 11:svn61719-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 178.1 KiB texlive-zapfding noarch 11:svn61719-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 79.5 KiB texlive-zref noarch 11:svn62977-70.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 816.8 KiB tzdata noarch 2023d-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.6 MiB urw-base35-bookman-fonts noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB urw-base35-c059-fonts noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB urw-base35-d050000l-fonts noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 84.3 KiB urw-base35-fonts noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.3 KiB urw-base35-fonts-common noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 37.4 KiB urw-base35-gothic-fonts noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB urw-base35-nimbus-mono-ps-fonts noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB urw-base35-nimbus-roman-fonts noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB urw-base35-nimbus-sans-fonts noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.4 MiB urw-base35-p052-fonts noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.5 MiB urw-base35-standard-symbols-ps-fonts noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 44.2 KiB urw-base35-z003-fonts noarch 20200910-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 390.8 KiB xdg-utils noarch 1.2.0~git20231511.21fb316-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 327.5 KiB xml-common noarch 0.6.3-62.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.4 KiB xpdf-libs x86_64 1:4.04-10.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.1 MiB xprop x86_64 1.2.5-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 58.7 KiB zziplib x86_64 0.13.72-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 236.3 KiB Transaction Summary: Installing: 669 packages Total size of inbound packages is 376 MiB. Need to download 376 MiB. After this operation 1 GiB will be used (install 1 GiB, remove 0 B). [ 1/669] help2man-0:1.49.3-3.fc39.noar 100% | 6.2 MiB/s | 217.0 KiB | 00m00s [ 2/669] texlive-xindy-11:svn65958-77. 100% | 44.6 MiB/s | 1.6 MiB | 00m00s [ 3/669] librsvg2-tools-0:2.57.1-1.fc4 100% | 44.7 MiB/s | 1.8 MiB | 00m00s [ 4/669] latexmk-0:4.82-1.fc40.noarch 100% | 68.5 MiB/s | 421.0 KiB | 00m00s [ 5/669] python3-devel-0:3.12.1-2.fc40 100% | 53.5 MiB/s | 273.9 KiB | 00m00s [ 6/669] python3-sphinx-latex-1:7.2.6- 100% | 3.4 MiB/s | 10.6 KiB | 00m00s [ 7/669] make-1:4.4.1-2.fc39.x86_64 100% | 70.9 MiB/s | 581.2 KiB | 00m00s [ 8/669] python3-configargparse-0:1.7- 100% | 17.0 MiB/s | 52.2 KiB | 00m00s [ 9/669] python3-boto3-0:1.34.12-1.fc4 100% | 65.9 MiB/s | 337.6 KiB | 00m00s [ 10/669] python3-requests-mock-0:1.10. 100% | 7.4 MiB/s | 52.7 KiB | 00m00s [ 11/669] python3-pytest-0:7.4.3-1.fc40 100% | 136.3 MiB/s | 1.8 MiB | 00m00s [ 12/669] vim-filesystem-2:9.0.2190-1.f 100% | 4.3 MiB/s | 17.7 KiB | 00m00s [ 13/669] texlive-xetex-11:svn66203-77. 100% | 89.4 MiB/s | 1.3 MiB | 00m00s [ 14/669] python3-pandas-0:1.5.3-7.fc39 100% | 166.1 MiB/s | 7.1 MiB | 00m00s [ 15/669] perl-English-0:1.11-503.fc40. 100% | 2.3 MiB/s | 13.8 KiB | 00m00s [ 16/669] perl-Env-0:1.06-500.fc39.noar 100% | 2.1 MiB/s | 19.4 KiB | 00m00s [ 17/669] python3-botocore-0:1.34.12-1. 100% | 134.8 MiB/s | 6.6 MiB | 00m00s [ 18/669] clisp-0:2.49.93-35.20230718gi 100% | 119.6 MiB/s | 6.1 MiB | 00m00s [ 19/669] perl-Getopt-Long-1:2.57-1.fc4 100% | 20.6 MiB/s | 63.2 KiB | 00m00s [ 20/669] perl-File-Basename-0:2.86-503 100% | 871.0 KiB/s | 17.4 KiB | 00m00s [ 21/669] perl-PathTools-0:3.89-500.fc3 100% | 26.9 MiB/s | 82.7 KiB | 00m00s [ 22/669] perl-File-Temp-1:0.231.100-50 100% | 3.6 MiB/s | 58.9 KiB | 00m00s [ 23/669] perl-POSIX-0:2.13-503.fc40.x8 100% | 9.5 MiB/s | 97.4 KiB | 00m00s [ 24/669] perl-interpreter-4:5.38.2-503 100% | 11.7 MiB/s | 71.9 KiB | 00m00s [ 25/669] perl-libs-4:5.38.2-503.fc40.x 100% | 132.5 MiB/s | 2.3 MiB | 00m00s [ 26/669] texlive-kpathsea-11:svn66209- 100% | 63.7 MiB/s | 1.1 MiB | 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| 6.2 MiB/s | 19.1 KiB | 00m00s [667/669] xpdf-libs-1:4.04-10.fc39.x86_ 100% | 126.4 MiB/s | 647.1 KiB | 00m00s [668/669] python3-rpm-generators-0:14-8 100% | 9.8 MiB/s | 30.0 KiB | 00m00s [669/669] python3-rpm-macros-0:3.12-5.f 100% | 4.5 MiB/s | 13.8 KiB | 00m00s -------------------------------------------------------------------------------- [669/669] Total 100% | 199.7 MiB/s | 375.7 MiB | 00m02s Running transaction [ 1/671] Verify package files 100% | 638.0 B/s | 669.0 B | 00m01s >>> Running pre-transaction scriptlet: texlive-base-11:20230311-77.fc39.x86_64 >>> Stop pre-transaction scriptlet: texlive-base-11:20230311-77.fc39.x86_64 [ 2/671] Prepare transaction 100% | 3.2 KiB/s | 669.0 B | 00m00s >>> Running pre-install scriptlet: texlive-base-11:20230311-77.fc39.x86_64 >>> Stop pre-install scriptlet: texlive-base-11:20230311-77.fc39.x86_64 [ 3/671] Installing texlive-base-11:20 100% | 514.0 MiB/s | 19.0 MiB | 00m00s [ 4/671] Installing texlive-lib-11:202 100% | 272.8 MiB/s | 1.1 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186.5 KiB | 00m00s [ 18/671] Installing adobe-mappings-cma 100% | 400.4 MiB/s | 14.4 MiB | 00m00s [ 19/671] Installing openjpeg2-0:2.5.0- 100% | 397.6 MiB/s | 407.1 KiB | 00m00s [ 20/671] Installing zziplib-0:0.13.72- 100% | 235.6 MiB/s | 241.2 KiB | 00m00s [ 21/671] Installing libXau-0:1.0.11-4. 100% | 0.0 B/s | 68.3 KiB | 00m00s [ 22/671] Installing libxcb-0:1.16-2.fc 100% | 275.5 MiB/s | 1.1 MiB | 00m00s [ 23/671] Installing emacs-filesystem-1 100% | 0.0 B/s | 544.0 B | 00m00s [ 24/671] Installing libgfortran-0:13.2 100% | 259.3 MiB/s | 2.9 MiB | 00m00s >>> Running pre-install scriptlet: xml-common-0:0.6.3-62.fc40.noarch >>> Stop pre-install scriptlet: xml-common-0:0.6.3-62.fc40.noarch [ 25/671] Installing xml-common-0:0.6.3 100% | 79.2 MiB/s | 81.1 KiB | 00m00s [ 26/671] Installing graphite2-0:1.3.14 100% | 193.3 MiB/s | 197.9 KiB | 00m00s [ 27/671] Installing adobe-mappings-cma 100% | 285.7 MiB/s | 585.2 KiB | 00m00s [ 28/671] Installing libSM-0:1.2.4-1.fc 100% | 96.3 MiB/s | 98.6 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urw-base35-gothic- 100% | 166.1 MiB/s | 1.2 MiB | 00m00s >>> Running post-install scriptlet: urw-base35-gothic-fonts-0:20200910-18.fc39.n >>> Stop post-install scriptlet: urw-base35-gothic-fonts-0:20200910-18.fc39.noar [ 36/671] Installing urw-base35-nimbus- 100% | 150.3 MiB/s | 1.1 MiB | 00m00s >>> Running post-install scriptlet: urw-base35-nimbus-mono-ps-fonts-0:20200910-1 >>> Stop post-install scriptlet: urw-base35-nimbus-mono-ps-fonts-0:20200910-18.f [ 37/671] Installing urw-base35-nimbus- 100% | 195.1 MiB/s | 1.4 MiB | 00m00s >>> Running post-install scriptlet: urw-base35-nimbus-roman-fonts-0:20200910-18. >>> Stop post-install scriptlet: urw-base35-nimbus-roman-fonts-0:20200910-18.fc3 [ 38/671] Installing urw-base35-nimbus- 100% | 266.0 MiB/s | 2.4 MiB | 00m00s >>> Running post-install scriptlet: urw-base35-nimbus-sans-fonts-0:20200910-18.f >>> Stop post-install scriptlet: urw-base35-nimbus-sans-fonts-0:20200910-18.fc39 [ 39/671] Installing urw-base35-p052-fo 100% | 212.5 MiB/s | 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| 121.2 MiB/s | 124.1 KiB | 00m00s [126/671] Installing perl-Digest-HMAC-0 100% | 0.0 B/s | 29.9 KiB | 00m00s [127/671] Installing perl-FileHandle-0: 100% | 0.0 B/s | 9.8 KiB | 00m00s [128/671] Installing perl-Digest-MD5-0: 100% | 60.1 MiB/s | 61.6 KiB | 00m00s [129/671] Installing perl-B-0:1.88-503. 100% | 247.9 MiB/s | 507.7 KiB | 00m00s [130/671] Installing perl-subs-0:1.04-5 100% | 0.0 B/s | 2.5 KiB | 00m00s [131/671] Installing perl-Authen-SASL-0 100% | 118.6 MiB/s | 121.5 KiB | 00m00s [132/671] Installing perl-Business-ISBN 100% | 270.5 MiB/s | 277.0 KiB | 00m00s [133/671] Installing perl-Data-Dumper-0 100% | 110.8 MiB/s | 113.5 KiB | 00m00s [134/671] Installing perl-libnet-0:3.15 100% | 287.4 MiB/s | 294.3 KiB | 00m00s [135/671] Installing perl-Business-ISBN 100% | 0.0 B/s | 55.5 KiB | 00m00s [136/671] Installing perl-AutoLoader-0: 100% | 0.0 B/s | 20.9 KiB | 00m00s [137/671] Installing perl-URI-0:5.21-1. 100% | 115.5 MiB/s | 236.6 KiB | 00m00s [138/671] Installing perl-locale-0:1.10 100% | 0.0 B/s | 6.6 KiB | 00m00s [139/671] Installing perl-File-Path-0:2 100% | 0.0 B/s | 64.5 KiB | 00m00s [140/671] Installing perl-Text-Tabs+Wra 100% | 0.0 B/s | 24.7 KiB | 00m00s [141/671] Installing perl-Mozilla-CA-0: 100% | 0.0 B/s | 10.2 KiB | 00m00s [142/671] Installing perl-Time-Local-2: 100% | 0.0 B/s | 70.5 KiB | 00m00s [143/671] Installing perl-IO-Socket-IP- 100% | 0.0 B/s | 100.4 KiB | 00m00s [144/671] Installing perl-if-0:0.61.000 100% | 0.0 B/s | 6.2 KiB | 00m00s [145/671] Installing perl-Pod-Escapes-1 100% | 0.0 B/s | 25.9 KiB | 00m00s [146/671] Installing perl-Net-SSLeay-0: 100% | 250.9 MiB/s | 1.3 MiB | 00m00s [147/671] Installing perl-IO-Socket-SSL 100% | 304.7 MiB/s | 623.9 KiB | 00m00s [148/671] Installing perl-POSIX-0:2.13- 100% | 232.6 MiB/s | 238.2 KiB | 00m00s [149/671] Installing perl-File-Temp-1:0 100% | 160.2 MiB/s | 164.0 KiB | 00m00s [150/671] Installing perl-IPC-Open3-0:1 100% | 0.0 B/s | 23.3 KiB | 00m00s [151/671] Installing perl-Class-Struct- 100% | 0.0 B/s | 25.9 KiB | 00m00s [152/671] Installing perl-Term-ANSIColo 100% | 96.8 MiB/s | 99.1 KiB | 00m00s [153/671] Installing perl-Term-Cap-0:1. 100% | 0.0 B/s | 30.5 KiB | 00m00s [154/671] Installing perl-Pod-Simple-1: 100% | 278.0 MiB/s | 569.4 KiB | 00m00s [155/671] Installing perl-HTTP-Tiny-0:0 100% | 150.6 MiB/s | 154.2 KiB | 00m00s [156/671] Installing perl-Symbol-0:1.09 100% | 0.0 B/s | 7.2 KiB | 00m00s [157/671] Installing perl-SelectSaver-0 100% | 0.0 B/s | 2.6 KiB | 00m00s [158/671] Installing perl-Socket-4:2.03 100% | 126.5 MiB/s | 129.6 KiB | 00m00s [159/671] Installing perl-File-stat-0:1 100% | 0.0 B/s | 13.2 KiB | 00m00s [160/671] Installing perl-podlators-1:5 100% | 304.7 MiB/s | 312.1 KiB | 00m00s [161/671] Installing perl-Pod-Perldoc-0 100% | 164.7 MiB/s | 168.6 KiB | 00m00s [162/671] Installing perl-Fcntl-0:1.15- 100% | 0.0 B/s | 29.7 KiB | 00m00s [163/671] Installing perl-Text-ParseWor 100% | 0.0 B/s | 14.5 KiB | 00m00s [164/671] Installing perl-base-0:2.27-5 100% | 0.0 B/s | 12.9 KiB | 00m00s [165/671] Installing perl-mro-0:1.28-50 100% | 0.0 B/s | 42.5 KiB | 00m00s [166/671] Installing perl-overloading-0 100% | 0.0 B/s | 5.5 KiB | 00m00s [167/671] Installing perl-IO-0:1.52-503 100% | 151.6 MiB/s | 155.2 KiB | 00m00s [168/671] Installing perl-Pod-Usage-4:2 100% | 0.0 B/s | 86.3 KiB | 00m00s [169/671] Installing perl-Errno-0:1.37- 100% | 0.0 B/s | 8.8 KiB | 00m00s [170/671] Installing perl-Scalar-List-U 100% | 145.2 MiB/s | 148.6 KiB | 00m00s [171/671] Installing perl-constant-0:1. 100% | 0.0 B/s | 27.4 KiB | 00m00s [172/671] Installing perl-parent-1:0.24 100% | 0.0 B/s | 10.4 KiB | 00m00s [173/671] Installing perl-vars-0:1.05-5 100% | 0.0 B/s | 4.3 KiB | 00m00s [174/671] Installing perl-Getopt-Std-0: 100% | 0.0 B/s | 11.6 KiB | 00m00s [175/671] Installing perl-MIME-Base64-0 100% | 47.1 MiB/s | 48.2 KiB | 00m00s [176/671] Installing perl-overload-0:1. 100% | 0.0 B/s | 71.9 KiB | 00m00s [177/671] Installing perl-Storable-1:3. 100% | 228.4 MiB/s | 233.9 KiB | 00m00s [178/671] Installing perl-Getopt-Long-1 100% | 143.3 MiB/s | 146.7 KiB | 00m00s [179/671] Installing perl-File-Basename 100% | 0.0 B/s | 14.6 KiB | 00m00s [180/671] Installing perl-Carp-0:1.54-5 100% | 0.0 B/s | 47.7 KiB | 00m00s [181/671] Installing perl-Exporter-0:5. 100% | 0.0 B/s | 55.5 KiB | 00m00s [182/671] Installing perl-PathTools-0:3 100% | 175.8 MiB/s | 180.1 KiB | 00m00s [183/671] Installing perl-DynaLoader-0: 100% | 0.0 B/s | 32.5 KiB | 00m00s [184/671] Installing perl-Encode-4:3.20 100% | 465.5 MiB/s | 9.8 MiB | 00m00s [185/671] Installing perl-libs-4:5.38.2 100% | 305.6 MiB/s | 10.1 MiB | 00m00s [186/671] Installing perl-interpreter-4 100% | 118.5 MiB/s | 121.3 KiB | 00m00s [187/671] Installing perl-File-Find-0:1 100% | 0.0 B/s | 42.4 KiB | 00m00s [188/671] Installing perl-Try-Tiny-0:0. 100% | 23.0 MiB/s | 70.5 KiB | 00m00s [189/671] Installing perl-Unicode-Norma 100% | 320.0 MiB/s | 655.4 KiB | 00m00s [190/671] Installing perl-version-8:0.9 100% | 128.3 MiB/s | 131.4 KiB | 00m00s [191/671] Installing perl-Module-Runtim 100% | 0.0 B/s | 31.4 KiB | 00m00s [192/671] Installing perl-Dist-CheckCon 100% | 0.0 B/s | 33.1 KiB | 00m00s [193/671] Installing perl-Module-Implem 100% | 0.0 B/s | 26.1 KiB | 00m00s [194/671] Installing perl-File-Copy-0:2 100% | 0.0 B/s | 20.2 KiB | 00m00s [195/671] Installing perl-Time-HiRes-4: 100% | 118.9 MiB/s | 121.7 KiB | 00m00s [196/671] Installing perl-LWP-MediaType 100% | 0.0 B/s | 80.4 KiB | 00m00s [197/671] Installing perl-Compress-Raw- 100% | 162.4 MiB/s | 166.3 KiB | 00m00s [198/671] Installing perl-Sys-Hostname- 100% | 0.0 B/s | 21.2 KiB | 00m00s [199/671] Installing perl-Params-Util-0 100% | 59.6 MiB/s | 61.0 KiB | 00m00s [200/671] Installing perl-English-0:1.1 100% | 0.0 B/s | 6.6 KiB | 00m00s [201/671] Installing perl-Data-Dump-0:1 100% | 0.0 B/s | 52.1 KiB | 00m00s [202/671] Installing perl-Text-Balanced 100% | 110.0 MiB/s | 112.6 KiB | 00m00s [203/671] Installing perl-Text-Unidecod 100% | 120.0 MiB/s | 491.7 KiB | 00m00s [204/671] Installing perl-Module-Load-1 100% | 0.0 B/s | 15.8 KiB | 00m00s [205/671] Installing perl-I18N-Langinfo 100% | 0.0 B/s | 30.9 KiB | 00m00s [206/671] Installing perl-Encode-Locale 100% | 0.0 B/s | 20.0 KiB | 00m00s [207/671] Installing perl-XML-Namespace 100% | 0.0 B/s | 46.0 KiB | 00m00s [208/671] Installing perl-XML-SAX-Base- 100% | 170.3 MiB/s | 174.4 KiB | 00m00s [209/671] Installing perl-Clone-0:0.46- 100% | 33.3 MiB/s | 34.1 KiB | 00m00s [210/671] Installing perl-TimeDate-1:2. 100% | 101.0 MiB/s | 103.4 KiB | 00m00s [211/671] Installing perl-HTTP-Date-0:6 100% | 0.0 B/s | 42.6 KiB | 00m00s [212/671] Installing perl-Sub-Install-0 100% | 0.0 B/s | 37.1 KiB | 00m00s [213/671] Installing perl-Devel-StackTr 100% | 0.0 B/s | 49.7 KiB | 00m00s [214/671] Installing perl-Date-ISO8601- 100% | 0.0 B/s | 25.4 KiB | 00m00s [215/671] Installing perl-Data-OptList- 100% | 50.9 MiB/s | 52.1 KiB | 00m00s [216/671] Installing perl-File-Listing- 100% | 0.0 B/s | 42.5 KiB | 00m00s [217/671] Installing perl-Parse-RecDesc 100% | 261.4 MiB/s | 535.3 KiB | 00m00s [218/671] Installing perl-Mail-Sendmail 100% | 0.0 B/s | 66.5 KiB | 00m00s [219/671] Installing perl-List-SomeUtil 100% | 106.3 MiB/s | 108.9 KiB | 00m00s [220/671] Installing perl-Params-Valida 100% | 152.5 MiB/s | 156.2 KiB | 00m00s [221/671] Installing perl-Module-CoreLi 100% | 553.8 MiB/s | 1.1 MiB | 00m00s [222/671] Installing perl-Module-Metada 100% | 0.0 B/s | 68.9 KiB | 00m00s [223/671] Installing perl-Text-BibTeX-0 100% | 171.5 MiB/s | 526.9 KiB | 00m00s [224/671] Installing perl-Unicode-Colla 100% | 450.2 MiB/s | 5.0 MiB | 00m00s [225/671] Installing perl-Unicode-UCD-0 100% | 100.1 MiB/s | 205.0 KiB | 00m00s [226/671] Installing perl-Date-Manip-0: 100% | 421.9 MiB/s | 11.0 MiB | 00m00s [227/671] Installing perl-Lingua-Transl 100% | 175.0 MiB/s | 179.2 KiB | 00m00s [228/671] Installing perl-Pod-Html-0:1. 100% | 0.0 B/s | 43.2 KiB | 00m00s [229/671] Installing perl-Env-0:1.06-50 100% | 0.0 B/s | 27.1 KiB | 00m00s [230/671] Installing perl-meta-notation 100% | 0.0 B/s | 2.3 KiB | 00m00s [231/671] Installing perl-sigtrap-0:1.1 100% | 0.0 B/s | 11.4 KiB | 00m00s [232/671] Installing perl-Business-ISSN 100% | 0.0 B/s | 22.1 KiB | 00m00s [233/671] Installing perl-Class-Accesso 100% | 0.0 B/s | 42.8 KiB | 00m00s [234/671] Installing perl-File-Slurper- 100% | 0.0 B/s | 30.0 KiB | 00m00s [235/671] Installing perl-IO-String-0:1 100% | 0.0 B/s | 17.7 KiB | 00m00s [236/671] Installing perl-IPC-Run3-0:0. 100% | 60.6 MiB/s | 62.1 KiB | 00m00s [237/671] Installing perl-Regexp-Common 100% | 230.2 MiB/s | 471.5 KiB | 00m00s [238/671] Installing perl-Sort-Key-0:1. 100% | 83.2 MiB/s | 85.2 KiB | 00m00s [239/671] Installing perl-Text-CSV-0:2. 100% | 340.7 MiB/s | 348.9 KiB | 00m00s [240/671] Installing perl-Text-Roman-0: 100% | 0.0 B/s | 34.6 KiB | 00m00s [241/671] Installing perl-XML-Writer-0: 100% | 67.0 MiB/s | 68.6 KiB | 00m00s [242/671] Installing perl-autovivificat 100% | 0.0 B/s | 63.6 KiB | 00m00s [243/671] Installing perl-NTLM-0:1.09-3 100% | 0.0 B/s | 32.6 KiB | 00m00s [244/671] Installing perl-WWW-RobotRule 100% | 0.0 B/s | 25.8 KiB | 00m00s [245/671] Installing perl-MIME-Charset- 100% | 104.7 MiB/s | 107.2 KiB | 00m00s [246/671] Installing perl-Unicode-LineB 100% | 131.9 MiB/s | 270.2 KiB | 00m00s [247/671] Installing perl-IPC-SysV-0:2. 100% | 74.8 MiB/s | 76.6 KiB | 00m00s [248/671] Installing perl-Mail-Sender-1 100% | 158.6 MiB/s | 162.4 KiB | 00m00s [249/671] Installing perl-Sys-Syslog-0: 100% | 98.5 MiB/s | 100.9 KiB | 00m00s [250/671] Installing perl-List-UtilsBy- 100% | 0.0 B/s | 57.1 KiB | 00m00s [251/671] Installing perl-List-AllUtils 100% | 0.0 B/s | 135.9 KiB | 00m00s [252/671] Installing perl-Convert-ASN1- 100% | 169.3 MiB/s | 173.3 KiB | 00m00s [253/671] Installing perl-ExtUtils-MM-U 100% | 0.0 B/s | 3.6 KiB | 00m00s [254/671] Installing perl-Compress-Raw- 100% | 69.4 MiB/s | 71.0 KiB | 00m00s [255/671] Installing perl-IO-Compress-0 100% | 216.4 MiB/s | 886.6 KiB | 00m00s [256/671] Installing perl-Net-HTTP-0:6. 100% | 0.0 B/s | 77.1 KiB | 00m00s [257/671] Installing perl-IO-HTML-0:1.0 100% | 0.0 B/s | 46.7 KiB | 00m00s [258/671] Installing perl-HTTP-Message- 100% | 214.1 MiB/s | 219.2 KiB | 00m00s [259/671] Installing perl-HTTP-Negotiat 100% | 0.0 B/s | 28.6 KiB | 00m00s [260/671] Installing perl-HTTP-Cookies- 100% | 0.0 B/s | 75.6 KiB | 00m00s [261/671] Installing perl-HTML-Tagset-0 100% | 0.0 B/s | 19.4 KiB | 00m00s [262/671] Installing perl-HTML-Parser-0 100% | 139.2 MiB/s | 285.0 KiB | 00m00s [263/671] Installing perl-LWP-Protocol- 100% | 0.0 B/s | 30.3 KiB | 00m00s [264/671] Installing perl-libwww-perl-0 100% | 171.9 MiB/s | 528.1 KiB | 00m00s [265/671] Installing perl-XML-Parser-0: 100% | 215.9 MiB/s | 663.3 KiB | 00m00s [266/671] Installing perl-XML-SAX-0:1.0 100% | 2.9 MiB/s | 125.7 KiB | 00m00s >>> Running post-install scriptlet: perl-XML-SAX-0:1.02-13.fc39.noarch >>> Stop post-install scriptlet: perl-XML-SAX-0:1.02-13.fc39.noarch [267/671] Installing perl-XML-LibXML-1: 100% | 12.3 MiB/s | 929.9 KiB | 00m00s >>> Running trigger-install scriptlet: perl-XML-LibXML-1:2.0209-3.fc40.x86_64 >>> Stop trigger-install scriptlet: perl-XML-LibXML-1:2.0209-3.fc40.x86_64 [268/671] Installing perl-XML-LibXML-Si 100% | 51.0 MiB/s | 52.2 KiB | 00m00s [269/671] Installing perltidy-0:2023091 100% | 424.3 MiB/s | 3.4 MiB | 00m00s [270/671] Installing perl-Class-Singlet 100% | 0.0 B/s | 41.3 KiB | 00m00s [271/671] Installing perl-File-Compare- 100% | 0.0 B/s | 6.0 KiB | 00m00s [272/671] Installing perl-Tie-Cycle-0:1 100% | 0.0 B/s | 23.2 KiB | 00m00s [273/671] Installing perl-Business-ISMN 100% | 0.0 B/s | 37.5 KiB | 00m00s [274/671] Installing perl-Sub-Identify- 100% | 35.4 MiB/s | 36.3 KiB | 00m00s [275/671] Installing perl-Filter-2:1.64 100% | 84.9 MiB/s | 173.9 KiB | 00m00s [276/671] Installing perl-encoding-4:3. 100% | 0.0 B/s | 150.0 KiB | 00m00s [277/671] Installing perl-open-0:1.13-5 100% | 0.0 B/s | 11.7 KiB | 00m00s [278/671] Installing perl-XML-XPath-0:1 100% | 102.3 MiB/s | 209.5 KiB | 00m00s [279/671] Installing texlive-epstopdf-1 100% | 0.0 B/s | 40.6 KiB | 00m00s [280/671] Installing texlive-epstopdf-p 100% | 378.9 MiB/s | 388.0 KiB | 00m00s [281/671] Installing texlive-cm-11:svn5 100% | 201.5 MiB/s | 1.0 MiB | 00m00s [282/671] Installing texlive-etex-11:sv 100% | 0.0 B/s | 42.7 KiB | 00m00s [283/671] Installing texlive-hyphen-bas 100% | 0.0 B/s | 65.9 KiB | 00m00s [284/671] Installing texlive-plain-11:s 100% | 111.1 MiB/s | 113.8 KiB | 00m00s [285/671] Installing texlive-tex-ini-fi 100% | 0.0 B/s | 10.1 KiB | 00m00s [286/671] Installing texlive-unicode-da 100% | 511.8 MiB/s | 3.1 MiB | 00m00s [287/671] Installing texlive-graphics-d 100% | 0.0 B/s | 99.9 KiB | 00m00s [288/671] Installing texlive-hyph-utf8- 100% | 0.0 B/s | 76.6 KiB | 00m00s [289/671] Installing texlive-knuth-lib- 100% | 103.8 MiB/s | 106.3 KiB | 00m00s [290/671] Installing texlive-gsftopk-11 100% | 0.0 B/s | 48.4 KiB | 00m00s [291/671] Installing texlive-luatex-11: 100% | 456.4 MiB/s | 9.6 MiB | 00m00s [292/671] Installing texlive-texlive.in 100% | 335.7 MiB/s | 1.0 MiB | 00m00s [293/671] Installing texlive-texlive-sc 100% | 170.5 MiB/s | 349.1 KiB | 00m00s [294/671] Installing texlive-kpathsea-1 100% | 519.2 MiB/s | 2.1 MiB | 00m00s [295/671] Installing texlive-iftex-11:s 100% | 0.0 B/s | 30.3 KiB | 00m00s [296/671] Installing texlive-amsmath-11 100% | 262.4 MiB/s | 268.7 KiB | 00m00s [297/671] Installing texlive-kvoptions- 100% | 538.7 MiB/s | 551.6 KiB | 00m00s [298/671] Installing texlive-url-11:svn 100% | 0.0 B/s | 22.1 KiB | 00m00s [299/671] Installing texlive-ltxcmds-11 100% | 415.6 MiB/s | 425.5 KiB | 00m00s [300/671] Installing texlive-atbegshi-1 100% | 434.6 MiB/s | 445.1 KiB | 00m00s [301/671] Installing texlive-atveryend- 100% | 200.8 MiB/s | 411.2 KiB | 00m00s [302/671] Installing texlive-babel-11:s 100% | 74.0 MiB/s | 2.2 MiB | 00m00s [303/671] Installing texlive-etex-pkg-1 100% | 0.0 B/s | 19.0 KiB | 00m00s [304/671] Installing texlive-etoolbox-1 100% | 0.0 B/s | 67.7 KiB | 00m00s [305/671] Installing texlive-pdftexcmds 100% | 415.6 MiB/s | 425.6 KiB | 00m00s [306/671] Installing texlive-latex-font 100% | 60.6 MiB/s | 124.2 KiB | 00m00s [307/671] Installing texlive-lm-11:svn6 100% | 527.2 MiB/s | 39.5 MiB | 00m00s [308/671] Installing texlive-amsfonts-1 100% | 318.0 MiB/s | 6.0 MiB | 00m00s [309/671] Installing texlive-auxhook-11 100% | 296.1 MiB/s | 303.2 KiB | 00m00s [310/671] Installing texlive-etexcmds-1 100% | 314.7 MiB/s | 322.3 KiB | 00m00s [311/671] Installing texlive-l3backend- 100% | 553.5 MiB/s | 1.1 MiB | 00m00s [312/671] Installing texlive-booktabs-1 100% | 0.0 B/s | 19.0 KiB | 00m00s [313/671] Installing texlive-hypdoc-11: 100% | 351.1 MiB/s | 359.5 KiB | 00m00s [314/671] Installing texlive-fancyhdr-1 100% | 0.0 B/s | 32.7 KiB | 00m00s [315/671] Installing texlive-footmisc-1 100% | 0.0 B/s | 65.6 KiB | 00m00s [316/671] Installing texlive-multido-11 100% | 19.2 MiB/s | 19.6 KiB | 00m00s [317/671] Installing texlive-palatino-1 100% | 186.8 MiB/s | 1.1 MiB | 00m00s [318/671] Installing texlive-zapfding-1 100% | 80.8 MiB/s | 82.7 KiB | 00m00s [319/671] Installing texlive-marvosym-1 100% | 183.9 MiB/s | 188.3 KiB | 00m00s [320/671] Installing texlive-infwarerr- 100% | 300.3 MiB/s | 307.5 KiB | 00m00s [321/671] Installing texlive-intcalc-11 100% | 461.7 MiB/s | 472.8 KiB | 00m00s [322/671] Installing texlive-kvsetkeys- 100% | 418.8 MiB/s | 428.8 KiB | 00m00s [323/671] Installing texlive-letltxmacr 100% | 305.3 MiB/s | 312.6 KiB | 00m00s [324/671] Installing texlive-pdfescape- 100% | 368.3 MiB/s | 377.2 KiB | 00m00s [325/671] Installing texlive-graphics-c 100% | 0.0 B/s | 3.9 KiB | 00m00s [326/671] Installing texlive-graphics-1 100% | 125.6 MiB/s | 128.7 KiB | 00m00s [327/671] Installing texlive-tools-11:s 100% | 201.0 MiB/s | 411.7 KiB | 00m00s [328/671] Installing texlive-xkeyval-11 100% | 69.9 MiB/s | 71.6 KiB | 00m00s [329/671] Installing texlive-geometry-1 100% | 0.0 B/s | 50.2 KiB | 00m00s [330/671] Installing texlive-colortbl-1 100% | 0.0 B/s | 21.8 KiB | 00m00s [331/671] Installing texlive-bigintcalc 100% | 504.7 MiB/s | 516.8 KiB | 00m00s [332/671] Installing texlive-natbib-11: 100% | 131.1 MiB/s | 134.2 KiB | 00m00s [333/671] Installing texlive-uniquecoun 100% | 306.1 MiB/s | 313.5 KiB | 00m00s [334/671] Installing texlive-fp-11:svn4 100% | 124.9 MiB/s | 127.9 KiB | 00m00s [335/671] Installing texlive-rerunfilec 100% | 354.8 MiB/s | 363.3 KiB | 00m00s [336/671] Installing texlive-bitset-11: 100% | 648.0 MiB/s | 663.5 KiB | 00m00s [337/671] Installing texlive-caption-11 100% | 445.6 MiB/s | 912.6 KiB | 00m00s [338/671] Installing texlive-carlisle-1 100% | 0.0 B/s | 32.8 KiB | 00m00s [339/671] Installing texlive-csquotes-1 100% | 0.0 B/s | 113.3 KiB | 00m00s [340/671] Installing texlive-sauerj-11: 100% | 0.0 B/s | 28.6 KiB | 00m00s [341/671] Installing texlive-catchfile- 100% | 312.5 MiB/s | 320.0 KiB | 00m00s [342/671] Installing texlive-ifplatform 100% | 0.0 B/s | 13.5 KiB | 00m00s [343/671] Installing texlive-babelbib-1 100% | 384.4 MiB/s | 787.2 KiB | 00m00s [344/671] Installing texlive-firstaid-1 100% | 291.8 MiB/s | 298.8 KiB | 00m00s [345/671] Installing texlive-hologo-11: 100% | 650.5 MiB/s | 666.1 KiB | 00m00s [346/671] Installing texlive-glyphlist- 100% | 0.0 B/s | 91.1 KiB | 00m00s [347/671] Installing texlive-ctablestac 100% | 0.0 B/s | 20.9 KiB | 00m00s [348/671] Installing texlive-luatexbase 100% | 0.0 B/s | 15.1 KiB | 00m00s [349/671] Installing texlive-titlesec-1 100% | 0.0 B/s | 98.9 KiB | 00m00s [350/671] Installing texlive-paralist-1 100% | 0.0 B/s | 24.1 KiB | 00m00s [351/671] Installing texlive-ragged2e-1 100% | 716.1 MiB/s | 733.3 KiB | 00m00s [352/671] Installing texlive-setspace-1 100% | 0.0 B/s | 22.4 KiB | 00m00s [353/671] Installing texlive-avantgar-1 100% | 248.4 MiB/s | 1.2 MiB | 00m00s [354/671] Installing texlive-bookman-11 100% | 246.7 MiB/s | 1.2 MiB | 00m00s [355/671] Installing texlive-charter-11 100% | 202.6 MiB/s | 415.0 KiB | 00m00s [356/671] Installing texlive-courier-11 100% | 228.8 MiB/s | 937.1 KiB | 00m00s [357/671] Installing texlive-helvetic-1 100% | 228.5 MiB/s | 1.8 MiB | 00m00s [358/671] Installing texlive-symbol-11: 100% | 80.1 MiB/s | 82.0 KiB | 00m00s [359/671] Installing texlive-times-11:s 100% | 199.6 MiB/s | 1.0 MiB | 00m00s [360/671] Installing texlive-utopia-11: 100% | 269.2 MiB/s | 551.4 KiB | 00m00s [361/671] Installing texlive-fpl-11:svn 100% | 317.9 MiB/s | 651.2 KiB | 00m00s [362/671] Installing texlive-mathpazo-1 100% | 113.9 MiB/s | 116.7 KiB | 00m00s [363/671] Installing texlive-psnfss-11: 100% | 58.3 MiB/s | 119.5 KiB | 00m00s [364/671] Installing texlive-latexconfi 100% | 0.0 B/s | 9.8 KiB | 00m00s [365/671] Installing texlive-bookmark-1 100% | 558.8 MiB/s | 572.2 KiB | 00m00s [366/671] Installing texlive-gettitlest 100% | 332.2 MiB/s | 340.1 KiB | 00m00s [367/671] Installing texlive-hycolor-11 100% | 403.5 MiB/s | 413.1 KiB | 00m00s [368/671] Installing texlive-kvdefineke 100% | 308.1 MiB/s | 315.5 KiB | 00m00s [369/671] Installing texlive-refcount-1 100% | 341.0 MiB/s | 349.2 KiB | 00m00s [370/671] Installing texlive-stringenc- 100% | 527.1 MiB/s | 1.1 MiB | 00m00s [371/671] Installing texlive-grfext-11: 100% | 321.3 MiB/s | 329.1 KiB | 00m00s [372/671] Installing texlive-lm-math-11 100% | 359.8 MiB/s | 736.9 KiB | 00m00s [373/671] Installing texlive-wasy-11:sv 100% | 138.7 MiB/s | 142.1 KiB | 00m00s [374/671] Installing texlive-lua-alt-ge 100% | 0.0 B/s | 4.3 KiB | 00m00s [375/671] Installing texlive-modes-11:s 100% | 382.8 MiB/s | 391.9 KiB | 00m00s [376/671] Installing texlive-placeins-1 100% | 0.0 B/s | 5.4 KiB | 00m00s [377/671] Installing texlive-zref-11:sv 100% | 200.7 MiB/s | 822.0 KiB | 00m00s [378/671] Installing texlive-metafont-1 100% | 270.3 MiB/s | 830.4 KiB | 00m00s [379/671] Installing texlive-wasy-type1 100% | 328.8 MiB/s | 336.7 KiB | 00m00s [380/671] Installing texlive-auto-pst-p 100% | 0.0 B/s | 15.6 KiB | 00m00s [381/671] Installing texlive-subfig-11: 100% | 0.0 B/s | 37.5 KiB | 00m00s [382/671] Installing texlive-euro-11:sv 100% | 0.0 B/s | 15.9 KiB | 00m00s [383/671] Installing texlive-breakurl-1 100% | 0.0 B/s | 17.9 KiB | 00m00s [384/671] Installing texlive-tabulary-1 100% | 0.0 B/s | 23.1 KiB | 00m00s [385/671] Installing texlive-fncychap-1 100% | 0.0 B/s | 38.4 KiB | 00m00s [386/671] Installing texlive-logreq-11: 100% | 0.0 B/s | 27.2 KiB | 00m00s [387/671] Installing texlive-dvips-11:s 100% | 317.9 MiB/s | 1.6 MiB | 00m00s [388/671] Installing texlive-memoir-11: 100% | 472.3 MiB/s | 483.6 KiB | 00m00s [389/671] Installing texlive-hopatch-11 100% | 169.5 MiB/s | 347.2 KiB | 00m00s [390/671] Installing texlive-tex-gyre-1 100% | 478.2 MiB/s | 24.4 MiB | 00m00s [391/671] Installing texlive-everyshi-1 100% | 0.0 B/s | 158.9 KiB | 00m00s [392/671] Installing texlive-xetexconfi 100% | 0.0 B/s | 776.0 B | 00m00s [393/671] Installing texlive-alphalph-1 100% | 368.3 MiB/s | 377.1 KiB | 00m00s [394/671] Installing texlive-enumitem-1 100% | 0.0 B/s | 60.1 KiB | 00m00s [395/671] Installing texlive-underscore 100% | 0.0 B/s | 20.1 KiB | 00m00s [396/671] Installing texlive-anyfontsiz 100% | 0.0 B/s | 13.4 KiB | 00m00s [397/671] Installing texlive-capt-of-11 100% | 0.0 B/s | 10.9 KiB | 00m00s [398/671] Installing texlive-cmap-11:sv 100% | 0.0 B/s | 38.8 KiB | 00m00s [399/671] Installing texlive-framed-11: 100% | 0.0 B/s | 22.4 KiB | 00m00s [400/671] Installing texlive-gnu-freefo 100% | 369.2 MiB/s | 17.0 MiB | 00m00s [401/671] Installing texlive-luatex85-1 100% | 0.0 B/s | 25.1 KiB | 00m00s [402/671] Installing texlive-needspace- 100% | 0.0 B/s | 10.5 KiB | 00m00s [403/671] Installing texlive-parskip-11 100% | 0.0 B/s | 16.7 KiB | 00m00s [404/671] Installing texlive-wrapfig-11 100% | 0.0 B/s | 35.2 KiB | 00m00s [405/671] Installing texlive-fileconten 100% | 0.0 B/s | 13.0 KiB | 00m00s [406/671] Installing texlive-pst-math-1 100% | 0.0 B/s | 23.7 KiB | 00m00s [407/671] Installing texlive-luabidi-11 100% | 0.0 B/s | 26.8 KiB | 00m00s [408/671] Installing texlive-makecmds-1 100% | 0.0 B/s | 11.9 KiB | 00m00s [409/671] Installing texlive-marginnote 100% | 0.0 B/s | 23.3 KiB | 00m00s [410/671] Installing texlive-mparhack-1 100% | 0.0 B/s | 21.1 KiB | 00m00s [411/671] Installing texlive-picture-11 100% | 317.1 MiB/s | 324.8 KiB | 00m00s [412/671] Installing texlive-hobsub-11: 100% | 0.0 B/s | 81.9 KiB | 00m00s [413/671] Installing texlive-hyperref-1 100% | 375.7 MiB/s | 769.4 KiB | 00m00s [414/671] Installing texlive-attachfile 100% | 0.0 B/s | 33.2 KiB | 00m00s [415/671] Installing texlive-euenc-11:s 100% | 0.0 B/s | 42.2 KiB | 00m00s [416/671] Installing texlive-kastrup-11 100% | 0.0 B/s | 4.2 KiB | 00m00s [417/671] Installing texlive-babel-engl 100% | 0.0 B/s | 46.5 KiB | 00m00s [418/671] Installing texlive-fix2col-11 100% | 0.0 B/s | 17.4 KiB | 00m00s [419/671] Installing texlive-latex-lab- 100% | 770.3 MiB/s | 2.3 MiB | 00m00s [420/671] Installing texlive-mfnfss-11: 100% | 0.0 B/s | 24.7 KiB | 00m00s [421/671] Installing texlive-mptopdf-11 100% | 149.9 MiB/s | 153.5 KiB | 00m00s [422/671] Installing texlive-pagesel-11 100% | 347.7 MiB/s | 356.1 KiB | 00m00s [423/671] Installing texlive-pslatex-11 100% | 0.0 B/s | 29.2 KiB | 00m00s [424/671] Installing texlive-pspicture- 100% | 0.0 B/s | 14.7 KiB | 00m00s [425/671] Installing texlive-cmextra-11 100% | 138.4 MiB/s | 141.8 KiB | 00m00s [426/671] Installing texlive-euro-ce-11 100% | 46.0 MiB/s | 47.1 KiB | 00m00s [427/671] Installing texlive-eurosym-11 100% | 219.4 MiB/s | 224.7 KiB | 00m00s [428/671] Installing texlive-manfnt-fon 100% | 0.0 B/s | 43.1 KiB | 00m00s [429/671] Installing texlive-mflogo-fon 100% | 41.0 MiB/s | 42.0 KiB | 00m00s [430/671] Installing texlive-ncntrsbk-1 100% | 187.2 MiB/s | 958.2 KiB | 00m00s [431/671] Installing texlive-pxfonts-11 100% | 208.4 MiB/s | 853.5 KiB | 00m00s [432/671] Installing texlive-rsfs-11:sv 100% | 99.8 MiB/s | 102.2 KiB | 00m00s [433/671] Installing texlive-tex-gyre-m 100% | 334.4 MiB/s | 2.7 MiB | 00m00s [434/671] Installing texlive-txfonts-11 100% | 218.8 MiB/s | 1.5 MiB | 00m00s [435/671] Installing texlive-wasysym-11 100% | 0.0 B/s | 25.0 KiB | 00m00s [436/671] Installing texlive-zapfchan-1 100% | 90.3 MiB/s | 185.0 KiB | 00m00s [437/671] Installing texlive-bibtex-11: 100% | 384.2 MiB/s | 786.9 KiB | 00m00s [438/671] Installing texlive-colorprofi 100% | 133.8 MiB/s | 274.1 KiB | 00m00s [439/671] Installing texlive-ec-11:svn2 100% | 133.3 MiB/s | 2.7 MiB | 00m00s [440/671] Installing texlive-enctex-11: 100% | 182.9 MiB/s | 187.3 KiB | 00m00s [441/671] Installing texlive-hyphenex-1 100% | 0.0 B/s | 26.1 KiB | 00m00s [442/671] Installing texlive-knuth-loca 100% | 110.4 MiB/s | 113.1 KiB | 00m00s [443/671] Installing texlive-makeindex- 100% | 250.0 MiB/s | 512.0 KiB | 00m00s [444/671] Installing texlive-mflogo-11: 100% | 0.0 B/s | 13.6 KiB | 00m00s [445/671] Installing texlive-mfware-11: 100% | 219.5 MiB/s | 224.8 KiB | 00m00s [446/671] Installing texlive-tex-11:svn 100% | 200.6 MiB/s | 410.8 KiB | 00m00s [447/671] Installing texlive-texlive-en 100% | 659.7 MiB/s | 5.9 MiB | 00m00s [448/671] Installing texlive-texlive-ms 100% | 703.1 MiB/s | 1.4 MiB | 00m00s [449/671] Installing texlive-changepage 100% | 0.0 B/s | 28.2 KiB | 00m00s [450/671] Installing texlive-xstring-11 100% | 0.0 B/s | 57.0 KiB | 00m00s [451/671] Installing texlive-ifmtarg-11 100% | 0.0 B/s | 9.9 KiB | 00m00s [452/671] Installing texlive-pdfcolmk-1 100% | 0.0 B/s | 20.7 KiB | 00m00s [453/671] Installing texlive-xcolor-11: 100% | 0.0 B/s | 80.7 KiB | 00m00s [454/671] Installing texlive-eso-pic-11 100% | 0.0 B/s | 28.6 KiB | 00m00s [455/671] Installing texlive-varwidth-1 100% | 0.0 B/s | 20.3 KiB | 00m00s [456/671] Installing texlive-dehyph-11: 100% | 235.5 MiB/s | 241.2 KiB | 00m00s [457/671] Installing texlive-grffile-11 100% | 371.8 MiB/s | 380.7 KiB | 00m00s [458/671] Installing texlive-index-11:s 100% | 0.0 B/s | 62.1 KiB | 00m00s [459/671] Installing texlive-parallel-1 100% | 0.0 B/s | 23.3 KiB | 00m00s [460/671] Installing texlive-pdfcol-11: 100% | 338.7 MiB/s | 346.8 KiB | 00m00s [461/671] Installing texlive-lua-uni-al 100% | 128.2 MiB/s | 131.3 KiB | 00m00s [462/671] Installing texlive-lualibs-11 100% | 376.8 MiB/s | 771.6 KiB | 00m00s [463/671] Installing texlive-luaotfload 100% | 587.0 MiB/s | 8.2 MiB | 00m00s [464/671] Installing texlive-beton-11:s 100% | 0.0 B/s | 12.5 KiB | 00m00s [465/671] Installing texlive-euler-11:s 100% | 0.0 B/s | 21.4 KiB | 00m00s [466/671] Installing texlive-float-11:s 100% | 0.0 B/s | 16.2 KiB | 00m00s [467/671] Installing texlive-ucharcat-1 100% | 0.0 B/s | 10.9 KiB | 00m00s [468/671] Installing texlive-notoccite- 100% | 0.0 B/s | 3.0 KiB | 00m00s [469/671] Installing perl-IPC-System-Si 100% | 0.0 B/s | 73.4 KiB | 00m00s [470/671] Installing perl-Tie-RefHash-0 100% | 0.0 B/s | 35.7 KiB | 00m00s [471/671] Installing perl-autodie-0:2.3 100% | 213.7 MiB/s | 218.8 KiB | 00m00s [472/671] Installing perl-XML-LibXSLT-0 100% | 142.5 MiB/s | 145.9 KiB | 00m00s [473/671] Installing perl-deprecate-0:0 100% | 0.0 B/s | 6.9 KiB | 00m00s [474/671] Installing perl-Text-Soundex- 100% | 51.7 MiB/s | 52.9 KiB | 00m00s [475/671] Installing perl-Package-Gener 100% | 0.0 B/s | 31.5 KiB | 00m00s [476/671] Installing perl-Sub-Exporter- 100% | 98.5 MiB/s | 201.7 KiB | 00m00s [477/671] Installing perl-Sub-Exporter- 100% | 0.0 B/s | 28.8 KiB | 00m00s [478/671] Installing perl-Devel-GlobalD 100% | 0.0 B/s | 19.0 KiB | 00m00s [479/671] Installing perl-MRO-Compat-0: 100% | 0.0 B/s | 44.8 KiB | 00m00s [480/671] Installing perl-XString-0:0.0 100% | 37.8 MiB/s | 38.7 KiB | 00m00s [481/671] Installing perl-Opcode-0:1.64 100% | 0.0 B/s | 53.8 KiB | 00m00s [482/671] Installing perl-Safe-0:2.44-5 100% | 0.0 B/s | 31.0 KiB | 00m00s [483/671] Installing perl-Class-Method- 100% | 107.0 MiB/s | 109.5 KiB | 00m00s [484/671] Installing perl-Role-Tiny-0:2 100% | 0.0 B/s | 63.4 KiB | 00m00s [485/671] Installing perl-Ref-Util-XS-0 100% | 43.6 MiB/s | 44.6 KiB | 00m00s [486/671] Installing perl-Ref-Util-0:0. 100% | 0.0 B/s | 33.1 KiB | 00m00s [487/671] Installing perl-Math-Complex- 100% | 0.0 B/s | 85.8 KiB | 00m00s [488/671] Installing perl-Math-BigInt-1 100% | 467.2 MiB/s | 956.8 KiB | 00m00s [489/671] Installing perl-Data-Uniqid-0 100% | 0.0 B/s | 5.8 KiB | 00m00s [490/671] Installing perl-JSON-0:4.10-3 100% | 266.4 MiB/s | 272.7 KiB | 00m00s [491/671] Installing perl-LDAP-1:0.68-1 100% | 234.4 MiB/s | 960.1 KiB | 00m00s [492/671] Installing perl-Net-SMTP-SSL- 100% | 0.0 B/s | 5.3 KiB | 00m00s [493/671] Installing perl-MailTools-0:2 100% | 103.6 MiB/s | 212.1 KiB | 00m00s [494/671] Installing perl-Email-Date-Fo 100% | 0.0 B/s | 26.0 KiB | 00m00s [495/671] Installing perl-MIME-Types-0: 100% | 176.7 MiB/s | 180.9 KiB | 00m00s [496/671] Installing perl-MIME-Lite-0:3 100% | 243.0 MiB/s | 248.8 KiB | 00m00s [497/671] Installing perl-I18N-LangTags 100% | 0.0 B/s | 83.6 KiB | 00m00s [498/671] Installing perl-Locale-Makete 100% | 169.7 MiB/s | 173.8 KiB | 00m00s [499/671] Installing perl-Locale-Makete 100% | 0.0 B/s | 13.5 KiB | 00m00s [500/671] Installing perl-Params-Check- 100% | 0.0 B/s | 28.5 KiB | 00m00s [501/671] Installing perl-Module-Load-C 100% | 0.0 B/s | 29.9 KiB | 00m00s [502/671] Installing perl-IPC-Cmd-2:1.0 100% | 0.0 B/s | 85.8 KiB | 00m00s [503/671] Installing perl-Number-Compar 100% | 0.0 B/s | 5.4 KiB | 00m00s [504/671] Installing perl-Text-Glob-0:0 100% | 0.0 B/s | 9.2 KiB | 00m00s [505/671] Installing perl-File-Find-Rul 100% | 0.0 B/s | 44.2 KiB | 00m00s [506/671] Installing perl-Data-Compare- 100% | 0.0 B/s | 58.0 KiB | 00m00s [507/671] Installing perl-Class-Data-In 100% | 0.0 B/s | 7.0 KiB | 00m00s [508/671] Installing perl-Exception-Cla 100% | 92.3 MiB/s | 94.5 KiB | 00m00s 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texlive-kpathsea-11:svn66209-77.fc39.x86_64 >>> Running trigger-install scriptlet: texlive-kpathsea-11:svn66209-77.fc39.x86_ >>> Stop trigger-install scriptlet: texlive-kpathsea-11:svn66209-77.fc39.x86_64 >>> Running trigger-install scriptlet: texlive-kpathsea-11:svn66209-77.fc39.x86_ >>> Stop trigger-install scriptlet: texlive-kpathsea-11:svn66209-77.fc39.x86_64 >>> Running trigger-install scriptlet: fontconfig-0:2.15.0-1.fc40.x86_64 >>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-1.fc40.x86_64 Warning: skipped PGP checks for 669 package(s). Finish: build setup for snakemake-7.32.4-3.fc40.src.rpm Start: rpmbuild snakemake-7.32.4-3.fc40.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1704412800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.qbEfyE + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf snakemake-7.32.4 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/snakemake-7.32.4.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd snakemake-7.32.4 + rm -rf /builddir/build/BUILD/snakemake-7.32.4-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/snakemake-7.32.4-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/snakemake-7.11.0-docs-no-animated-demo.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP . recursedown('.') recursedown('./.github') 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recursedown('./tests/test_report/data') recursedown('./tests/test_report/envs') recursedown('./tests/test_report/expected-results') recursedown('./tests/test_report/report') recursedown('./tests/test_report/testdir') recursedown('./tests/test_report_dir') recursedown('./tests/test_report_dir/expected-results') recursedown('./tests/test_report_dir/test') recursedown('./tests/test_report_dir/test/js') recursedown('./tests/test_report_display_code') recursedown('./tests/test_report_display_code/expected-results') recursedown('./tests/test_report_zip') recursedown('./tests/test_report_zip/.snakemake') recursedown('./tests/test_report_zip/.snakemake/metadata') recursedown('./tests/test_report_zip/data') recursedown('./tests/test_report_zip/envs') recursedown('./tests/test_report_zip/expected-results') recursedown('./tests/test_report_zip/report') recursedown('./tests/test_report_zip/testdir') recursedown('./tests/test_restartable_job_cmd_exit_1') recursedown('./tests/test_restartable_job_cmd_exit_1/expected-results') recursedown('./tests/test_restartable_job_qsub_exit_1') recursedown('./tests/test_restartable_job_qsub_exit_1/expected-results') recursedown('./tests/test_retries') recursedown('./tests/test_retries/expected-results') recursedown('./tests/test_retries_not_overriden') recursedown('./tests/test_retries_not_overriden/expected-results') recursedown('./tests/test_rule_defined_in_for_loop') recursedown('./tests/test_rule_defined_in_for_loop/expected-results') recursedown('./tests/test_rule_inheritance_globals') recursedown('./tests/test_rule_inheritance_globals/.snakemake') recursedown('./tests/test_rule_inheritance_globals/.snakemake/metadata') recursedown('./tests/test_rule_inheritance_globals/expected-results') recursedown('./tests/test_ruledag') recursedown('./tests/test_ruledeps') recursedown('./tests/test_ruledeps/expected-results') recursedown('./tests/test_run_namedlist') recursedown('./tests/test_run_namedlist/expected-results') recursedown('./tests/test_same_wildcard') recursedown('./tests/test_same_wildcard/expected-results') recursedown('./tests/test_scatter_gather') recursedown('./tests/test_scatter_gather/expected-results') recursedown('./tests/test_scatter_gather/expected-results/gathered') recursedown('./tests/test_scatter_gather/expected-results/splitted') recursedown('./tests/test_scatter_gather_multiple_processes') recursedown('./tests/test_scatter_gather_multiple_processes/expected-results') recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/gathered') recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_a') recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_b') recursedown('./tests/test_script') recursedown('./tests/test_script/envs') recursedown('./tests/test_script/expected-results') recursedown('./tests/test_script/scripts') recursedown('./tests/test_script_py') recursedown('./tests/test_script_py/expected-results') recursedown('./tests/test_script_py/scripts') recursedown('./tests/test_service_jobs') recursedown('./tests/test_service_jobs/expected-results') recursedown('./tests/test_set_resources') recursedown('./tests/test_set_resources/expected-results') recursedown('./tests/test_shadow') recursedown('./tests/test_shadow/expected-results') recursedown('./tests/test_shadow_copy') recursedown('./tests/test_shadow_copy/expected-results') recursedown('./tests/test_shadow_prefix') recursedown('./tests/test_shadow_prefix/expected-results') recursedown('./tests/test_shadowed_log') recursedown('./tests/test_shadowed_log/expected-results') recursedown('./tests/test_shell') recursedown('./tests/test_shell/expected-results') recursedown('./tests/test_singularity') recursedown('./tests/test_singularity/expected-results') recursedown('./tests/test_singularity_conda') recursedown('./tests/test_singularity_conda/expected-results') recursedown('./tests/test_singularity_global') recursedown('./tests/test_singularity_global/expected-results') recursedown('./tests/test_singularity_module') recursedown('./tests/test_singularity_module/expected-results') recursedown('./tests/test_singularity_none') recursedown('./tests/test_singularity_none/expected-results') recursedown('./tests/test_slurm_mpi') recursedown('./tests/test_slurm_mpi/envs') recursedown('./tests/test_slurm_mpi/expected-results') recursedown('./tests/test_solver') recursedown('./tests/test_solver/expected-results') recursedown('./tests/test_source_path') recursedown('./tests/test_source_path/expected-results') recursedown('./tests/test_source_path/workflow') recursedown('./tests/test_source_path/workflow/resources') recursedown('./tests/test_spaces_in_fnames') recursedown('./tests/test_spaces_in_fnames/expected-results') recursedown('./tests/test_speed') recursedown('./tests/test_srcdir') recursedown('./tests/test_srcdir/expected-results') recursedown('./tests/test_static_remote') recursedown('./tests/test_static_remote/expected-results') recursedown('./tests/test_strict_mode') recursedown('./tests/test_strict_mode/expected-results') recursedown('./tests/test_string_resources') recursedown('./tests/test_string_resources/expected-results') recursedown('./tests/test_subworkflow_config') recursedown('./tests/test_subworkflow_config/expected-results') recursedown('./tests/test_subworkflows') recursedown('./tests/test_subworkflows/expected-results') recursedown('./tests/test_symlink_temp') recursedown('./tests/test_symlink_temp/expected-results') recursedown('./tests/test_symlink_time_handling') recursedown('./tests/test_symlink_time_handling/expected-results') recursedown('./tests/test_temp') recursedown('./tests/test_temp/expected-results') recursedown('./tests/test_temp_expand') recursedown('./tests/test_temp_expand/expected-results') recursedown('./tests/test_template_engine') recursedown('./tests/test_template_engine/expected-results') recursedown('./tests/test_tes') recursedown('./tests/test_tes/expected-results') recursedown('./tests/test_threads') recursedown('./tests/test_threads/expected-results') recursedown('./tests/test_threads0') recursedown('./tests/test_threads0/expected-results') recursedown('./tests/test_tibanna') recursedown('./tests/test_tibanna/expected-results') recursedown('./tests/test_tibanna/scripts') recursedown('./tests/test_tmpdir') recursedown('./tests/test_tmpdir/expected-results') recursedown('./tests/test_touch') recursedown('./tests/test_touch/expected-results') recursedown('./tests/test_touch_pipeline_with_temp_dir') recursedown('./tests/test_touch_pipeline_with_temp_dir/expected-results') recursedown('./tests/test_touch_remote_prefix') recursedown('./tests/test_touch_remote_prefix/expected-results') recursedown('./tests/test_touch_with_directories') recursedown('./tests/test_touch_with_directories/expected-results') recursedown('./tests/test_unpack_dict') recursedown('./tests/test_unpack_dict/expected-results') recursedown('./tests/test_unpack_list') recursedown('./tests/test_unpack_list/expected-results') recursedown('./tests/test_until') recursedown('./tests/test_until/expected-results') recursedown('./tests/test_update_config') recursedown('./tests/test_update_config/expected-results') recursedown('./tests/test_url_include') recursedown('./tests/test_url_include/expected-results') recursedown('./tests/test_use_rule_same_module') recursedown('./tests/test_use_rule_same_module/expected-results') recursedown('./tests/test_validate') recursedown('./tests/test_validate/expected-results') recursedown('./tests/test_wildcard_count_ambiguity') recursedown('./tests/test_wildcard_count_ambiguity/expected-results') recursedown('./tests/test_wildcard_keyword') recursedown('./tests/test_wildcard_keyword/expected-results') recursedown('./tests/test_workflow_profile') recursedown('./tests/test_workflow_profile/dummy-general-profile') recursedown('./tests/test_workflow_profile/expected-results') recursedown('./tests/test_workflow_profile/workflow') recursedown('./tests/test_workflow_profile/workflow/profiles') recursedown('./tests/test_workflow_profile/workflow/profiles/default') recursedown('./tests/test_wrapper') recursedown('./tests/test_wrapper/expected-results') recursedown('./tests/test_xrootd') ./setup.py: no change ./versioneer.py: no change ./.github/workflows/scripts/sacct-proxy.py: updating ./docs/conf.py: updating ./docs/apidocs/conf.py: updating ./examples/hello-world/scripts/plot-hist.py: no change ./snakemake/__init__.py: no change ./snakemake/__main__.py: no change ./snakemake/_version.py: no change ./snakemake/benchmark.py: no change ./snakemake/checkpoints.py: no change ./snakemake/cwl.py: no change ./snakemake/dag.py: no change ./snakemake/decorators.py: no change ./snakemake/exceptions.py: no change ./snakemake/gui.py: no change ./snakemake/interfaces.py: no change ./snakemake/io.py: no change ./snakemake/jobs.py: no change ./snakemake/logging.py: no change ./snakemake/modules.py: no change ./snakemake/notebook.py: no change ./snakemake/output_index.py: no change ./snakemake/parser.py: no change ./snakemake/path_modifier.py: no change ./snakemake/persistence.py: no change ./snakemake/profiles.py: no change ./snakemake/resources.py: no change ./snakemake/ruleinfo.py: no change ./snakemake/rules.py: no change ./snakemake/scheduler.py: no change ./snakemake/script.py: no change ./snakemake/shell.py: no change ./snakemake/sourcecache.py: no change ./snakemake/stats.py: no change ./snakemake/target_jobs.py: no change ./snakemake/utils.py: no change ./snakemake/workflow.py: no change ./snakemake/wrapper.py: no change ./snakemake/caching/__init__.py: no change ./snakemake/caching/hash.py: no change ./snakemake/caching/local.py: no change ./snakemake/caching/remote.py: no change ./snakemake/common/__init__.py: no change ./snakemake/common/tbdstring.py: no change ./snakemake/deployment/__init__.py: no change ./snakemake/deployment/conda.py: no change ./snakemake/deployment/containerize.py: no change ./snakemake/deployment/env_modules.py: no change ./snakemake/deployment/singularity.py: no change ./snakemake/executors/__init__.py: no change ./snakemake/executors/azure_batch.py: no change ./snakemake/executors/common.py: no change ./snakemake/executors/flux.py: no change ./snakemake/executors/ga4gh_tes.py: no change ./snakemake/executors/google_lifesciences.py: no change ./snakemake/executors/google_lifesciences_helper.py: updating ./snakemake/executors/slurm/__init__.py: no change ./snakemake/executors/slurm/slurm_jobstep.py: no change ./snakemake/executors/slurm/slurm_submit.py: no change ./snakemake/linting/__init__.py: no change ./snakemake/linting/links.py: no change ./snakemake/linting/rules.py: no change ./snakemake/linting/snakefiles.py: no change ./snakemake/remote/AzBlob.py: no change ./snakemake/remote/EGA.py: no change ./snakemake/remote/FTP.py: no change ./snakemake/remote/GS.py: no change ./snakemake/remote/HTTP.py: no change ./snakemake/remote/NCBI.py: no change ./snakemake/remote/S3.py: no change ./snakemake/remote/S3Mocked.py: no change ./snakemake/remote/SFTP.py: no change ./snakemake/remote/XRootD.py: no change ./snakemake/remote/__init__.py: no change ./snakemake/remote/dropbox.py: no change ./snakemake/remote/gfal.py: no change ./snakemake/remote/gridftp.py: no change ./snakemake/remote/iRODS.py: no change ./snakemake/remote/webdav.py: no change ./snakemake/remote/zenodo.py: no change ./snakemake/report/__init__.py: no change ./snakemake/report/rulegraph_spec.py: no change ./snakemake/report/data/__init__.py: no change ./snakemake/report/data/categories.py: no change ./snakemake/report/data/common.py: no change ./snakemake/report/data/packages.py: no change ./snakemake/report/data/results.py: no change ./snakemake/report/data/rulegraph.py: no change ./snakemake/report/data/rules.py: no change ./snakemake/report/data/runtimes.py: no change ./snakemake/report/data/timeline.py: no change ./snakemake/report/template/__init__.py: no change ./snakemake/report/template/components/__init__.py: no change ./snakemake/template_rendering/__init__.py: no change ./snakemake/template_rendering/jinja2.py: no change ./snakemake/template_rendering/yte.py: no change ./snakemake/unit_tests/__init__.py: no change ./snakemake/unit_tests/templates/__init__.py: no change ./tests/__init__.py: no change ./tests/common.py: no change ./tests/conftest.py: no change ./tests/test_azure_batch_executor.py: no change ./tests/test_expand.py: no change ./tests/test_google_lifesciences.py: no change ./tests/test_io.py: no change ./tests/test_kubernetes.py: no change ./tests/test_linting.py: no change ./tests/test_persistence.py: no change ./tests/test_schema.py: no change ./tests/test_script.py: no change ./tests/test_slurm.py: no change ./tests/test_tes.py: no change ./tests/test_tibanna.py: no change ./tests/testapi.py: no change ./tests/tests.py: no change ./tests/test14/qsub.py: updating ./tests/test_benchmark/script.py: updating ./tests/test_conda_python_3_7_script/test_script.py: no change ./tests/test_conda_python_script/test_script.py: no change ./tests/test_filegraph/scripts/vis.py: no change ./tests/test_generate_unit_tests/expected-results/.tests/unit/test_a.py: no change ./tests/test_generate_unit_tests/expected-results/.tests/unit/test_all.py: no change ./tests/test_generate_unit_tests/expected-results/.tests/unit/test_b.py: no change ./tests/test_get_log_both/wrapper.py: no change ./tests/test_get_log_complex/wrapper.py: no change ./tests/test_get_log_none/wrapper.py: no change ./tests/test_get_log_stderr/wrapper.py: no change ./tests/test_get_log_stdout/wrapper.py: no change ./tests/test_github_issue1158/qsub.py: updating ./tests/test_github_issue627/job.py: updating ./tests/test_github_issue_14/local_script.py: no change ./tests/test_github_issue_14/pythonTest.py: updating ./tests/test_handover/script.py: no change ./tests/test_issue1046/my_wrapper/wrapper.py: no change ./tests/test_issue916/local_script.py: no change ./tests/test_issue916/pythonTest.py: updating ./tests/test_job_properties/qsub.py: updating ./tests/test_local_import/bar.py: no change ./tests/test_local_import/foo/__init__.py: no change ./tests/test_paramspace/scripts/simulate.py: no change ./tests/test_paramspace_single_wildcard/scripts/simulate.py: no change ./tests/test_prebuilt_conda_script/test.py: no change ./tests/test_prebuilt_conda_script/dummy_package/src/dummy/__init__.py: no change ./tests/test_prebuilt_conda_script/dummy_package/src/dummy/dummy.py: no change ./tests/test_report_display_code/test.py: no change ./tests/test_restartable_job_cmd_exit_1/qsub.py: updating ./tests/test_restartable_job_qsub_exit_1/qsub.py: updating ./tests/test_script/scripts/test.py: no change ./tests/test_script_py/scripts/test.py: no change ./tests/test_singularity/script.py: no change ./tests/test_singularity_module/script.py: no change ./tests/test_static_remote/S3MockedForStaticTest.py: no change ./tests/test_static_remote/__init__.py: no change ./tests/test_string_resources/qsub.py: updating ./tests/test_tibanna/cleanup.py: no change ./tests/test_tibanna/scripts/step2.py: no change recursedown('./tests/test_yaml_config') recursedown('./tests/test_yaml_config/expected-results') + sed -r -i '1{/^#!/d}' snakemake/executors/jobscript.sh snakemake/executors/google_lifesciences_helper.py + sed -r -i 's@"python"@"/usr/bin/python3"@g' tests/test_linting.py + sed -r -i /sphinxcontrib-napoleon/d docs/requirements.txt + echo 'latex_engine = '\''xelatex'\''' + for editor in nano vim + cp -vp misc/nano/README.md README-nano.md 'misc/nano/README.md' -> 'README-nano.md' + for editor in nano vim + cp -vp misc/vim/README.md README-vim.md 'misc/vim/README.md' -> 'README-vim.md' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.ehBuG0 + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.4-3.fc40.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt Handling sphinx >=3 from requirements file docs/requirements.txt Requirement satisfied: sphinx >=3 (installed: sphinx 7.2.6) Handling sphinx-argparse from requirements file docs/requirements.txt Requirement not satisfied: sphinx-argparse Handling sphinx_rtd_theme from requirements file docs/requirements.txt Requirement not satisfied: sphinx_rtd_theme Handling docutils from requirements file docs/requirements.txt Requirement satisfied: docutils (installed: docutils 0.20.1) Handling myst-parser from requirements file docs/requirements.txt Requirement not satisfied: myst-parser Handling configargparse from requirements file docs/requirements.txt Requirement satisfied: configargparse (installed: configargparse 1.7) Handling appdirs from requirements file docs/requirements.txt Requirement not satisfied: appdirs Exiting dependency generation pass: all requirements files + cat /builddir/build/BUILD/snakemake-7.32.4-3.fc40.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 74.3 KiB/s | 23.1 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 105.7 KiB/s | 4.1 KiB | 00m00s Copr repository 100% | 119.6 KiB/s | 2.2 KiB | 00m00s Repositories loaded. Package "librsvg2-tools-2.57.1-1.fc40.x86_64" is already installed. Package "texlive-xindy-11:svn65958-77.fc39.x86_64" is already installed. Package "help2man-1.49.3-3.fc39.noarch" is already installed. Package "latexmk-4.82-1.fc40.noarch" is already installed. Package "make-1:4.4.1-2.fc39.x86_64" is already installed. Package "pyproject-rpm-macros-1.11.0-1.fc40.noarch" is already installed. Package "python3-devel-3.12.1-2.fc40.x86_64" is already installed. Package "python3-sphinx-latex-1:7.2.6-4.fc40.noarch" is already installed. Package "python3-boto3-1.34.12-1.fc40.noarch" is already installed. Package "python3-configargparse-1.7-1.fc40.noarch" is already installed. Package "python3-docutils-0.20.1-1.fc40.noarch" is already installed. Package "python3-packaging-23.2-2.fc40.noarch" is already installed. Package "python3-pandas-1.5.3-7.fc39~bootstrap.x86_64" is already installed. Package "python3-pytest-7.4.3-1.fc40.noarch" is already installed. Package "python3-requests-mock-1.10.0-5.fc39.noarch" is already installed. Package "python3-sphinx-1:7.2.6-4.fc40.noarch" is already installed. Package "texlive-xetex-11:svn66203-77.fc39.x86_64" is already installed. Package "vim-filesystem-2:9.0.2190-1.fc40.noarch" is already installed. Package Arch Version Repository Size Installing: python3-appdirs noarch 1.4.4-11.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 68.9 KiB python3-myst-parser noarch 2.0.0-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 707.2 KiB python3-pip noarch 23.3.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 14.2 MiB python3-sphinx-argparse noarch 0.4.0-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 110.1 KiB python3-sphinx_rtd_theme noarch 2.0.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 317.9 KiB Installing dependencies: fontawesome4-fonts noarch 1:4.7.0-19.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 296.6 KiB google-roboto-slab-fonts noarch 1.100263-0.21.20150923git.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 699.2 KiB lato-fonts noarch 2.015-17.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 11.3 MiB libyaml x86_64 0.2.5-12.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 130.9 KiB python3-markdown-it-py noarch 3.0.0-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 496.2 KiB python3-mdit-py-plugins noarch 0.4.0-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 281.9 KiB python3-mdurl noarch 0.1.2-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40.8 KiB python3-pyyaml x86_64 6.0.1-11.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 783.2 KiB python3-sphinxcontrib-jquery noarch 4.1-5.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 381.8 KiB Transaction Summary: Installing: 14 packages Total size of inbound packages is 7 MiB. Need to download 7 MiB. After this operation 30 MiB will be used (install 30 MiB, remove 0 B). [ 1/14] python3-appdirs-0:1.4.4-11.fc39 100% | 791.0 KiB/s | 22.9 KiB | 00m00s [ 2/14] python3-sphinx-argparse-0:0.4.0 100% | 5.4 MiB/s | 38.9 KiB | 00m00s [ 3/14] python3-pip-0:23.3.1-2.fc40.noa 100% | 72.7 MiB/s | 2.9 MiB | 00m00s [ 4/14] python3-myst-parser-0:2.0.0-3.f 100% | 4.5 MiB/s | 184.5 KiB | 00m00s [ 5/14] google-roboto-slab-fonts-0:1.10 100% | 33.3 MiB/s | 238.8 KiB | 00m00s [ 6/14] python3-sphinx_rtd_theme-0:2.0. 100% | 7.2 MiB/s | 73.7 KiB | 00m00s [ 7/14] fontawesome4-fonts-1:4.7.0-19.f 100% | 28.5 MiB/s | 204.2 KiB | 00m00s [ 8/14] python3-markdown-it-py-0:3.0.0- 100% | 53.6 MiB/s | 164.5 KiB | 00m00s [ 9/14] python3-sphinxcontrib-jquery-0: 100% | 27.7 MiB/s | 113.4 KiB | 00m00s [10/14] python3-pyyaml-0:6.0.1-11.fc39. 100% | 17.7 MiB/s | 218.1 KiB | 00m00s [11/14] lato-fonts-0:2.015-17.fc39.noar 100% | 155.2 MiB/s | 3.1 MiB | 00m00s [12/14] python3-mdit-py-plugins-0:0.4.0 100% | 5.8 MiB/s | 100.5 KiB | 00m00s [13/14] python3-mdurl-0:0.1.2-4.fc39.no 100% | 6.3 MiB/s | 25.7 KiB | 00m00s [14/14] libyaml-0:0.2.5-12.fc39.x86_64 100% | 19.3 MiB/s | 59.3 KiB | 00m00s -------------------------------------------------------------------------------- [14/14] Total 100% | 101.7 MiB/s | 7.4 MiB | 00m00s Running transaction [ 1/16] Verify package files 100% | 666.0 B/s | 14.0 B | 00m00s [ 2/16] Prepare transaction 100% | 280.0 B/s | 14.0 B | 00m00s [ 3/16] Installing libyaml-0:0.2.5-12.f 100% | 129.2 MiB/s | 132.3 KiB | 00m00s [ 4/16] Installing python3-pyyaml-0:6.0 100% | 259.4 MiB/s | 797.0 KiB | 00m00s [ 5/16] Installing python3-mdurl-0:0.1. 100% | 45.0 MiB/s | 46.1 KiB | 00m00s [ 6/16] Installing python3-markdown-it- 100% | 105.5 MiB/s | 540.1 KiB | 00m00s [ 7/16] Installing python3-mdit-py-plug 100% | 75.8 MiB/s | 310.4 KiB | 00m00s [ 8/16] Installing python3-sphinxcontri 100% | 375.9 MiB/s | 385.0 KiB | 00m00s [ 9/16] Installing lato-fonts-0:2.015-1 100% | 377.8 MiB/s | 11.3 MiB | 00m00s [10/16] Installing google-roboto-slab-f 100% | 342.3 MiB/s | 701.0 KiB | 00m00s [11/16] Installing fontawesome4-fonts-1 100% | 290.8 MiB/s | 297.8 KiB | 00m00s [12/16] Installing python3-sphinx_rtd_t 100% | 82.6 MiB/s | 338.4 KiB | 00m00s [13/16] Installing python3-myst-parser- 100% | 177.8 MiB/s | 728.1 KiB | 00m00s [14/16] Installing python3-sphinx-argpa 100% | 37.2 MiB/s | 114.2 KiB | 00m00s [15/16] Installing python3-pip-0:23.3.1 100% | 250.2 MiB/s | 14.5 MiB | 00m00s [16/16] Installing python3-appdirs-0:1. 100% | 1.2 MiB/s | 71.1 KiB | 00m00s >>> Running trigger-install scriptlet: glibc-common-0:2.38.9000-30.fc40.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.38.9000-30.fc40.x86_64 >>> Running trigger-install scriptlet: fontconfig-0:2.15.0-1.fc40.x86_64 >>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-1.fc40.x86_64 Warning: skipped PGP checks for 14 package(s). Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1704412800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.CoUA77 + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.4-3.fc40.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt Handling sphinx >=3 from requirements file docs/requirements.txt Requirement satisfied: sphinx >=3 (installed: sphinx 7.2.6) Handling sphinx-argparse from requirements file docs/requirements.txt Requirement satisfied: sphinx-argparse (installed: sphinx-argparse 0.4.0) Handling sphinx_rtd_theme from requirements file docs/requirements.txt Requirement satisfied: sphinx_rtd_theme (installed: sphinx_rtd_theme 2.0.0) Handling docutils from requirements file docs/requirements.txt Requirement satisfied: docutils (installed: docutils 0.20.1) Handling myst-parser from requirements file docs/requirements.txt Requirement satisfied: myst-parser (installed: myst-parser 2.0.0) Handling configargparse from requirements file docs/requirements.txt Requirement satisfied: configargparse (installed: configargparse 1.7) Handling appdirs from requirements file docs/requirements.txt Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 68.2.2) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info creating snakemake.egg-info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt writing manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement not satisfied: wheel Exiting dependency generation pass: get_requires_for_build_wheel + cat /builddir/build/BUILD/snakemake-7.32.4-3.fc40.x86_64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 745.6 KiB/s | 23.1 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 187.5 KiB/s | 4.1 KiB | 00m00s Copr repository 100% | 107.7 KiB/s | 2.2 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: python3-wheel noarch 1:0.41.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 507.1 KiB Transaction Summary: Installing: 1 packages Total size of inbound packages is 148 KiB. Need to download 148 KiB. After this operation 507 KiB will be used (install 507 KiB, remove 0 B). Package "librsvg2-tools-2.57.1-1.fc40.x86_64" is already installed. Package "texlive-xindy-11:svn65958-77.fc39.x86_64" is already installed. Package "help2man-1.49.3-3.fc39.noarch" is already installed. Package "latexmk-4.82-1.fc40.noarch" is already installed. Package "make-1:4.4.1-2.fc39.x86_64" is already installed. Package "pyproject-rpm-macros-1.11.0-1.fc40.noarch" is already installed. Package "python3-devel-3.12.1-2.fc40.x86_64" is already installed. Package "python3-sphinx-latex-1:7.2.6-4.fc40.noarch" is already installed. Package "python3-appdirs-1.4.4-11.fc39.noarch" is already installed. Package "python3-boto3-1.34.12-1.fc40.noarch" is already installed. Package "python3-configargparse-1.7-1.fc40.noarch" is already installed. Package "python3-docutils-0.20.1-1.fc40.noarch" is already installed. Package "python3-myst-parser-2.0.0-3.fc40.noarch" is already installed. Package "python3-packaging-23.2-2.fc40.noarch" is already installed. Package "python3-pandas-1.5.3-7.fc39~bootstrap.x86_64" is already installed. Package "python3-pip-23.3.1-2.fc40.noarch" is already installed. Package "python3-pytest-7.4.3-1.fc40.noarch" is already installed. Package "python3-requests-mock-1.10.0-5.fc39.noarch" is already installed. Package "python3-setuptools-68.2.2-1.fc40.noarch" is already installed. Package "python3-sphinx-1:7.2.6-4.fc40.noarch" is already installed. Package "python3-sphinx-argparse-0.4.0-4.fc39.noarch" is already installed. Package "python3-sphinx_rtd_theme-2.0.0-1.fc40.noarch" is already installed. Package "texlive-xetex-11:svn66203-77.fc39.x86_64" is already installed. Package "vim-filesystem-2:9.0.2190-1.fc40.noarch" is already installed. [1/1] python3-wheel-1:0.41.2-1.fc40.noa 100% | 7.2 MiB/s | 147.5 KiB | 00m00s -------------------------------------------------------------------------------- [1/1] Total 100% | 7.2 MiB/s | 147.5 KiB | 00m00s Running transaction [1/3] Verify package files 100% | 0.0 B/s | 1.0 B | 00m00s [2/3] Prepare transaction 100% | 58.0 B/s | 1.0 B | 00m00s [3/3] Installing python3-wheel-1:0.41.2 100% | 13.2 MiB/s | 526.1 KiB | 00m00s >>> Running trigger-install scriptlet: glibc-common-0:2.38.9000-30.fc40.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.38.9000-30.fc40.x86_64 Warning: skipped PGP checks for 1 package(s). Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1704412800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.sBWbFa + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.4-3.fc40.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt Handling sphinx >=3 from requirements file docs/requirements.txt Requirement satisfied: sphinx >=3 (installed: sphinx 7.2.6) Handling sphinx-argparse from requirements file docs/requirements.txt Requirement satisfied: sphinx-argparse (installed: sphinx-argparse 0.4.0) Handling sphinx_rtd_theme from requirements file docs/requirements.txt Requirement satisfied: sphinx_rtd_theme (installed: sphinx_rtd_theme 2.0.0) Handling docutils from requirements file docs/requirements.txt Requirement satisfied: docutils (installed: docutils 0.20.1) Handling myst-parser from requirements file docs/requirements.txt Requirement satisfied: myst-parser (installed: myst-parser 2.0.0) Handling configargparse from requirements file docs/requirements.txt Requirement satisfied: configargparse (installed: configargparse 1.7) Handling appdirs from requirements file docs/requirements.txt Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 68.2.2) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) running dist_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-7.32.4/snakemake-7.32.4.dist-info' Handling appdirs from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling configargparse from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: configargparse (installed: configargparse 1.7) Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: connection-pool >=0.0.3 Handling datrie from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: datrie Handling docutils from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: docutils (installed: docutils 0.20.1) Handling gitpython from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: gitpython Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: humanfriendly Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jinja2 <4.0,>=3.0 (installed: jinja2 3.1.2) Handling jsonschema from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: jsonschema Handling nbformat from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: nbformat Handling packaging from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: packaging (installed: packaging 23.2) Handling psutil from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: psutil Handling pulp >=2.0 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: pulp >=2.0 Handling pyyaml from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pyyaml (installed: pyyaml 6.0.1) Handling requests from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: requests (installed: requests 2.28.2) Handling reretry from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: reretry Handling smart-open >=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: smart-open >=3.0 Handling stopit from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: stopit Handling tabulate from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: tabulate Handling throttler from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: throttler Handling toposort >=1.10 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: toposort >=1.10 Handling wrapt from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: wrapt Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: yte <2.0,>=1.5.1 Handling azure-storage-blob ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: azure-storage-blob ; extra == 'azure' Handling azure-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: azure-batch ; extra == 'azure' Handling azure-core ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: azure-core ; extra == 'azure' Handling azure-identity ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: azure-identity ; extra == 'azure' Handling azure-mgmt-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: azure-mgmt-batch ; extra == 'azure' Handling google-api-python-client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: google-api-python-client ; extra == 'google-cloud' Handling google-cloud-storage ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: google-cloud-storage ; extra == 'google-cloud' Handling google-crc32c ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: google-crc32c ; extra == 'google-cloud' Handling oauth2client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: oauth2client ; extra == 'google-cloud' Handling slacker ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake) Requirement not satisfied: slacker ; extra == 'messaging' Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: eido ; extra == 'pep' Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: peppy ; extra == 'pep' Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pygments ; extra == 'reports' (installed: pygments 2.17.2) + cat /builddir/build/BUILD/snakemake-7.32.4-3.fc40.x86_64-pyproject-buildrequires + rm -rfv snakemake-7.32.4.dist-info/ removed 'snakemake-7.32.4.dist-info/AUTHORS.rst' removed 'snakemake-7.32.4.dist-info/LICENSE.md' removed 'snakemake-7.32.4.dist-info/METADATA' removed 'snakemake-7.32.4.dist-info/entry_points.txt' removed 'snakemake-7.32.4.dist-info/top_level.txt' removed directory 'snakemake-7.32.4.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: Additional repo http_kojipkgs_fedorapr 100% | 242.6 KiB/s | 4.1 KiB | 00m00s Copr repository 100% | 165.6 KiB/s | 2.2 KiB | 00m00s fedora 100% | 75.0 KiB/s | 23.1 KiB | 00m00s Repositories loaded. Package "librsvg2-tools-2.57.1-1.fc40.x86_64" is already installed. Package "texlive-xindy-11:svn65958-77.fc39.x86_64" is already installed. Package "help2man-1.49.3-3.fc39.noarch" is already installed. Package "latexmk-4.82-1.fc40.noarch" is already installed. Package "make-1:4.4.1-2.fc39.x86_64" is already installed. Package "pyproject-rpm-macros-1.11.0-1.fc40.noarch" is already installed. Package "python3-devel-3.12.1-2.fc40.x86_64" is already installed. Package "python3-sphinx-latex-1:7.2.6-4.fc40.noarch" is already installed. Package "python3-appdirs-1.4.4-11.fc39.noarch" is already installed. Package "python3-boto3-1.34.12-1.fc40.noarch" is already installed. Package "python3-configargparse-1.7-1.fc40.noarch" is already installed. Package "python3-docutils-0.20.1-1.fc40.noarch" is already installed. Package "python3-myst-parser-2.0.0-3.fc40.noarch" is already installed. Package "python3-packaging-23.2-2.fc40.noarch" is already installed. Package "python3-pandas-1.5.3-7.fc39~bootstrap.x86_64" is already installed. Package "python3-pip-23.3.1-2.fc40.noarch" is already installed. Package "python3-pygments-2.17.2-1.fc40.noarch" is already installed. Package "python3-pytest-7.4.3-1.fc40.noarch" is already installed. Package "python3-pyyaml-6.0.1-11.fc39.x86_64" is already installed. Package "python3-requests-2.28.2-7.fc40.noarch" is already installed. Package "python3-requests-mock-1.10.0-5.fc39.noarch" is already installed. Package "python3-setuptools-68.2.2-1.fc40.noarch" is already installed. Package "python3-sphinx-1:7.2.6-4.fc40.noarch" is already installed. Package "python3-sphinx-argparse-0.4.0-4.fc39.noarch" is already installed. Package "python3-sphinx_rtd_theme-2.0.0-1.fc40.noarch" is already installed. Package "python3-wheel-1:0.41.2-1.fc40.noarch" is already installed. Package "texlive-xetex-11:svn66203-77.fc39.x86_64" is already installed. Package "vim-filesystem-2:9.0.2190-1.fc40.noarch" is already installed. Package Arch Version Repository Size Installing: python3-GitPython noarch 3.1.40-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB python3-azure-batch noarch 14.0.0-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.9 MiB python3-azure-core noarch 2:1.28.0-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 MiB python3-azure-identity noarch 1:1.14.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 916.2 KiB python3-azure-mgmt-batch noarch 17.0.0-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 MiB python3-azure-storage-blob noarch 12.14.1-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 5.1 MiB python3-connection_pool noarch 0.0.3-9.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21.1 KiB python3-datrie x86_64 0.8.2-22.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 448.8 KiB python3-google-api-client noarch 2:2.112.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 91.3 MiB python3-google-cloud-storage noarch 2.14.0-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 MiB python3-google-crc32c x86_64 1.1.2-9.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 71.9 KiB python3-humanfriendly noarch 10.0-8.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 549.1 KiB python3-jsonschema noarch 4.19.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 851.4 KiB python3-nbformat noarch 5.9.1-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 548.1 KiB python3-oauth2client noarch 4.1.3-23.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 689.1 KiB python3-psutil x86_64 5.9.5-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.4 MiB python3-pulp noarch 2.7.0-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 887.2 KiB python3-reretry noarch 0.11.8-6.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 32.1 KiB python3-slacker noarch 0.14.0-12.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 160.2 KiB python3-smart_open noarch 6.4.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 459.0 KiB python3-stopit noarch 1.1.2-8.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 65.1 KiB python3-tabulate noarch 0.9.0-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 340.4 KiB python3-throttler noarch 1.2.2-7.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 33.5 KiB python3-toposort noarch 1.10-8.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 28.5 KiB python3-wrapt x86_64 1.16.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 200.0 KiB python3-yte noarch 1.5.4-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 60.5 KiB Installing dependencies: abseil-cpp x86_64 20230802.1-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.4 MiB c-ares x86_64 1.22.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 370.2 KiB git-core x86_64 2.43.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 20.8 MiB google-crc32c x86_64 1.1.2-7.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 24.0 KiB grpc-data noarch 1.48.4-30.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 29.6 KiB less x86_64 643-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 388.5 KiB libcbor x86_64 0.10.2-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 77.9 KiB libedit x86_64 3.1-48.20230828cvs.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 251.8 KiB libfido2 x86_64 1.14.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 237.7 KiB openssh x86_64 9.3p1-13.fc40.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 MiB openssh-clients x86_64 9.3p1-13.fc40.1 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 2.6 MiB protobuf x86_64 3.19.6-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 3.2 MiB python3-adal noarch 1.2.7-13.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 322.2 KiB python3-attrs noarch 23.1.0-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 379.0 KiB python3-azure-common noarch 1:1.1.28-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 79.8 KiB python3-azure-mgmt-core noarch 1:1.3.2-9.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 95.6 KiB python3-boto noarch 2.49.0-18.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 9.8 MiB python3-cachetools noarch 5.3.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 142.0 KiB python3-certifi noarch 2023.05.07-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 6.6 KiB 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 162.4 KiB python3-ply noarch 3.11-20.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 561.0 KiB python3-portalocker noarch 2.8.2-2.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 132.0 KiB python3-protobuf x86_64 3.19.6-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.9 MiB python3-pyOpenSSL noarch 23.2.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 646.7 KiB python3-pyasn1 noarch 0.5.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 881.5 KiB python3-pyasn1-modules noarch 0.5.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.7 MiB python3-pycparser noarch 2.20-12.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 839.3 KiB python3-pyparsing noarch 3.1.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.0 MiB python3-referencing noarch 0.31.1-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 313.3 KiB python3-requests-oauthlib noarch 1.3.1-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 134.6 KiB python3-rpds-py x86_64 0.16.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 675.8 KiB python3-rsa noarch 4.9-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 240.6 KiB python3-smmap noarch 5.0.0-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 198.2 KiB python3-traitlets noarch 5.11.2-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 929.3 KiB python3-typing-extensions noarch 4.9.0-1.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 391.0 KiB python3-uritemplate noarch 4.1.1-6.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 78.4 KiB python3-zombie-imp noarch 0.0.2-3.fc40 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 58.0 KiB re2 x86_64 1:20220601-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 476.7 KiB Transaction Summary: Installing: 90 packages Total size of inbound packages is 26 MiB. Need to download 26 MiB. After this operation 189 MiB will be used (install 189 MiB, remove 0 B). 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python3-nbformat-0:5 100% | 112.6 MiB/s | 576.4 KiB | 00m00s [73/92] Installing python3-google-api-c 100% | 755.7 MiB/s | 91.4 MiB | 00m00s [74/92] Installing python3-google-cloud 100% | 413.2 MiB/s | 1.2 MiB | 00m00s [75/92] Installing python3-smart_open-0 100% | 230.1 MiB/s | 471.3 KiB | 00m00s [76/92] Installing python3-azure-mgmt-b 100% | 387.1 MiB/s | 1.9 MiB | 00m00s [77/92] Installing python3-azure-batch- 100% | 493.5 MiB/s | 3.0 MiB | 00m00s [78/92] Installing python3-azure-storag 100% | 433.2 MiB/s | 5.2 MiB | 00m00s [79/92] Installing python3-azure-identi 100% | 158.2 MiB/s | 971.7 KiB | 00m00s [80/92] Installing python3-GitPython-0: 100% | 289.0 MiB/s | 1.7 MiB | 00m00s [81/92] Installing python3-wrapt-0:1.16 100% | 201.9 MiB/s | 206.8 KiB | 00m00s [82/92] Installing python3-toposort-0:1 100% | 0.0 B/s | 30.8 KiB | 00m00s [83/92] Installing python3-throttler-0: 100% | 38.6 MiB/s | 39.6 KiB | 00m00s [84/92] Installing python3-tabulate-0:0 100% | 335.8 MiB/s | 343.8 KiB | 00m00s [85/92] Installing python3-stopit-0:1.1 100% | 67.7 MiB/s | 69.4 KiB | 00m00s [86/92] Installing python3-slacker-0:0. 100% | 159.6 MiB/s | 163.4 KiB | 00m00s [87/92] Installing python3-reretry-0:0. 100% | 34.6 MiB/s | 35.4 KiB | 00m00s [88/92] Installing python3-pulp-0:2.7.0 100% | 220.8 MiB/s | 904.2 KiB | 00m00s [89/92] Installing python3-psutil-0:5.9 100% | 357.6 MiB/s | 1.4 MiB | 00m00s [90/92] Installing python3-humanfriendl 100% | 273.7 MiB/s | 560.6 KiB | 00m00s [91/92] Installing python3-datrie-0:0.8 100% | 220.1 MiB/s | 450.8 KiB | 00m00s [92/92] Installing python3-connection_p 100% | 423.4 KiB/s | 23.7 KiB | 00m00s >>> Running trigger-install scriptlet: glibc-common-0:2.38.9000-30.fc40.x86_64 >>> Stop trigger-install scriptlet: glibc-common-0:2.38.9000-30.fc40.x86_64 Warning: skipped PGP checks for 90 package(s). Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1704412800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.RZ1WNu + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.4-3.fc40.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt Handling sphinx >=3 from requirements file docs/requirements.txt Requirement satisfied: sphinx >=3 (installed: sphinx 7.2.6) Handling sphinx-argparse from requirements file docs/requirements.txt Requirement satisfied: sphinx-argparse (installed: sphinx-argparse 0.4.0) Handling sphinx_rtd_theme from requirements file docs/requirements.txt Requirement satisfied: sphinx_rtd_theme (installed: sphinx_rtd_theme 2.0.0) Handling docutils from requirements file docs/requirements.txt Requirement satisfied: docutils (installed: docutils 0.20.1) Handling myst-parser from requirements file docs/requirements.txt Requirement satisfied: myst-parser (installed: myst-parser 2.0.0) Handling configargparse from requirements file docs/requirements.txt Requirement satisfied: configargparse (installed: configargparse 1.7) Handling appdirs from requirements file docs/requirements.txt Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 68.2.2) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) running dist_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-7.32.4/snakemake-7.32.4.dist-info' Handling appdirs from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling configargparse from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: configargparse (installed: configargparse 1.7) Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: connection-pool >=0.0.3 (installed: connection-pool 0.0.3) Handling datrie from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: datrie (installed: datrie 0.8.2) Handling docutils from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: docutils (installed: docutils 0.20.1) Handling gitpython from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: gitpython (installed: gitpython 3.1.40) Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: humanfriendly (installed: humanfriendly 10.0) Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jinja2 <4.0,>=3.0 (installed: jinja2 3.1.2) Handling jsonschema from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jsonschema (installed: jsonschema 4.19.1) Handling nbformat from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: nbformat (installed: nbformat 5.9.1) Handling packaging from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: packaging (installed: packaging 23.2) Handling psutil from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: psutil (installed: psutil 5.9.5) Handling pulp >=2.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pulp >=2.0 (installed: pulp 2.7.0) Handling pyyaml from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pyyaml (installed: pyyaml 6.0.1) Handling requests from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: requests (installed: requests 2.28.2) Handling reretry from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: reretry (installed: reretry 0.11.8) Handling smart-open >=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: smart-open >=3.0 (installed: smart-open 6.4.0) Handling stopit from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: stopit (installed: stopit 1.1.2) Handling tabulate from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: tabulate (installed: tabulate 0.9.0) Handling throttler from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: throttler (installed: throttler 1.2.2) Handling toposort >=1.10 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: toposort >=1.10 (installed: toposort 1.10) Handling wrapt from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: wrapt (installed: wrapt 1.16.0) Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: yte <2.0,>=1.5.1 (installed: yte 1.5.4) Handling azure-storage-blob ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-storage-blob ; extra == 'azure' (installed: azure-storage-blob 12.14.1) Handling azure-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-batch ; extra == 'azure' (installed: azure-batch 14.0.0) Handling azure-core ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-core ; extra == 'azure' (installed: azure-core 1.28.0) Handling azure-identity ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-identity ; extra == 'azure' (installed: azure-identity 1.14.0) Handling azure-mgmt-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-mgmt-batch ; extra == 'azure' (installed: azure-mgmt-batch 17.0.0) Handling google-api-python-client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: google-api-python-client ; extra == 'google-cloud' (installed: google-api-python-client 2.112.0) Handling google-cloud-storage ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: google-cloud-storage ; extra == 'google-cloud' (installed: google-cloud-storage 2.14.0) Handling google-crc32c ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: google-crc32c ; extra == 'google-cloud' (installed: google-crc32c 1.1.2) Handling oauth2client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: oauth2client ; extra == 'google-cloud' (installed: oauth2client 4.1.3) Handling slacker ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: slacker ; extra == 'messaging' (installed: slacker 0.14.0) Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: eido ; extra == 'pep' Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: peppy ; extra == 'pep' Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pygments ; extra == 'reports' (installed: pygments 2.17.2) + cat /builddir/build/BUILD/snakemake-7.32.4-3.fc40.x86_64-pyproject-buildrequires + rm -rfv snakemake-7.32.4.dist-info/ removed 'snakemake-7.32.4.dist-info/AUTHORS.rst' removed 'snakemake-7.32.4.dist-info/LICENSE.md' removed 'snakemake-7.32.4.dist-info/METADATA' removed 'snakemake-7.32.4.dist-info/top_level.txt' removed 'snakemake-7.32.4.dist-info/entry_points.txt' removed directory 'snakemake-7.32.4.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.buildreqs.nosrc.rpm INFO: Going to install missing dynamic buildrequires Updating and loading repositories: fedora 100% | 350.2 KiB/s | 23.1 KiB | 00m00s Copr repository 100% | 89.7 KiB/s | 2.2 KiB | 00m00s Additional repo http_kojipkgs_fedorapr 100% | 242.6 KiB/s | 4.1 KiB | 00m00s Repositories loaded. Nothing to do. Package "librsvg2-tools-2.57.1-1.fc40.x86_64" is already installed. Package "texlive-xindy-11:svn65958-77.fc39.x86_64" is already installed. Package "help2man-1.49.3-3.fc39.noarch" is already installed. Package "latexmk-4.82-1.fc40.noarch" is already installed. Package "make-1:4.4.1-2.fc39.x86_64" is already installed. Package "pyproject-rpm-macros-1.11.0-1.fc40.noarch" is already installed. Package "python3-devel-3.12.1-2.fc40.x86_64" is already installed. Package "python3-sphinx-latex-1:7.2.6-4.fc40.noarch" is already installed. Package "python3-appdirs-1.4.4-11.fc39.noarch" is already installed. Package "python3-azure-batch-14.0.0-1.fc39.noarch" is already installed. Package "python3-azure-core-2:1.28.0-3.fc39.noarch" is already installed. Package "python3-azure-identity-1:1.14.0-1.fc40.noarch" is already installed. Package "python3-azure-mgmt-batch-17.0.0-5.fc39.noarch" is already installed. Package "python3-azure-storage-blob-12.14.1-4.fc39.noarch" is already installed. Package "python3-boto3-1.34.12-1.fc40.noarch" is already installed. Package "python3-configargparse-1.7-1.fc40.noarch" is already installed. Package "python3-connection_pool-0.0.3-9.fc39.noarch" is already installed. Package "python3-datrie-0.8.2-22.fc40.x86_64" is already installed. Package "python3-docutils-0.20.1-1.fc40.noarch" is already installed. Package "python3-GitPython-3.1.40-1.fc40.noarch" is already installed. Package "python3-google-api-client-2:2.112.0-1.fc40.noarch" is already installed. Package "python3-google-cloud-storage-2.14.0-2.fc40.noarch" is already installed. Package "python3-google-crc32c-1.1.2-9.fc39.x86_64" is already installed. Package "python3-humanfriendly-10.0-8.fc39.noarch" is already installed. Package "python3-jsonschema-4.19.1-1.fc40.noarch" is already installed. Package "python3-myst-parser-2.0.0-3.fc40.noarch" is already installed. Package "python3-nbformat-5.9.1-2.fc39.noarch" is already installed. Package "python3-oauth2client-4.1.3-23.fc39.noarch" is already installed. Package "python3-packaging-23.2-2.fc40.noarch" is already installed. Package "python3-pandas-1.5.3-7.fc39~bootstrap.x86_64" is already installed. Package "python3-pip-23.3.1-2.fc40.noarch" is already installed. Package "python3-psutil-5.9.5-2.fc40.x86_64" is already installed. Package "python3-pulp-2.7.0-3.fc39.noarch" is already installed. Package "python3-pygments-2.17.2-1.fc40.noarch" is already installed. Package "python3-pytest-7.4.3-1.fc40.noarch" is already installed. Package "python3-pyyaml-6.0.1-11.fc39.x86_64" is already installed. Package "python3-requests-2.28.2-7.fc40.noarch" is already installed. Package "python3-requests-mock-1.10.0-5.fc39.noarch" is already installed. Package "python3-reretry-0.11.8-6.fc40.noarch" is already installed. Package "python3-setuptools-68.2.2-1.fc40.noarch" is already installed. Package "python3-slacker-0.14.0-12.fc39.noarch" is already installed. Package "python3-smart_open-6.4.0-1.fc40.noarch" is already installed. Package "python3-sphinx-1:7.2.6-4.fc40.noarch" is already installed. Package "python3-sphinx-argparse-0.4.0-4.fc39.noarch" is already installed. Package "python3-sphinx_rtd_theme-2.0.0-1.fc40.noarch" is already installed. Package "python3-stopit-1.1.2-8.fc39.noarch" is already installed. Package "python3-tabulate-0.9.0-4.fc39.noarch" is already installed. Package "python3-throttler-1.2.2-7.fc40.noarch" is already installed. Package "python3-toposort-1.10-8.fc40.noarch" is already installed. Package "python3-wheel-1:0.41.2-1.fc40.noarch" is already installed. Package "python3-wrapt-1.16.0-1.fc40.x86_64" is already installed. Package "texlive-xetex-11:svn66203-77.fc39.x86_64" is already installed. Package "vim-filesystem-2:9.0.2190-1.fc40.noarch" is already installed. Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1704412800 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.2NDoWj + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + echo -n + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 ' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + RPM_TOXENV=py312 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.4-3.fc40.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt Handling sphinx >=3 from requirements file docs/requirements.txt Requirement satisfied: sphinx >=3 (installed: sphinx 7.2.6) Handling sphinx-argparse from requirements file docs/requirements.txt Requirement satisfied: sphinx-argparse (installed: sphinx-argparse 0.4.0) Handling sphinx_rtd_theme from requirements file docs/requirements.txt Requirement satisfied: sphinx_rtd_theme (installed: sphinx_rtd_theme 2.0.0) Handling docutils from requirements file docs/requirements.txt Requirement satisfied: docutils (installed: docutils 0.20.1) Handling myst-parser from requirements file docs/requirements.txt Requirement satisfied: myst-parser (installed: myst-parser 2.0.0) Handling configargparse from requirements file docs/requirements.txt Requirement satisfied: configargparse (installed: configargparse 1.7) Handling appdirs from requirements file docs/requirements.txt Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling setuptools>=42 from build-system.requires Requirement satisfied: setuptools>=42 (installed: setuptools 68.2.2) Handling tomli; python_version < "3.11" from build-system.requires Ignoring alien requirement: tomli; python_version < "3.11" running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.41.2) running dist_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-7.32.4/snakemake-7.32.4.dist-info' Handling appdirs from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: appdirs (installed: appdirs 1.4.4) Handling configargparse from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: configargparse (installed: configargparse 1.7) Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: connection-pool >=0.0.3 (installed: connection-pool 0.0.3) Handling datrie from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: datrie (installed: datrie 0.8.2) Handling docutils from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: docutils (installed: docutils 0.20.1) Handling gitpython from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: gitpython (installed: gitpython 3.1.40) Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: humanfriendly (installed: humanfriendly 10.0) Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jinja2 <4.0,>=3.0 (installed: jinja2 3.1.2) Handling jsonschema from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: jsonschema (installed: jsonschema 4.19.1) Handling nbformat from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: nbformat (installed: nbformat 5.9.1) Handling packaging from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: packaging (installed: packaging 23.2) Handling psutil from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: psutil (installed: psutil 5.9.5) Handling pulp >=2.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pulp >=2.0 (installed: pulp 2.7.0) Handling pyyaml from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pyyaml (installed: pyyaml 6.0.1) Handling requests from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: requests (installed: requests 2.28.2) Handling reretry from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: reretry (installed: reretry 0.11.8) Handling smart-open >=3.0 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: smart-open >=3.0 (installed: smart-open 6.4.0) Handling stopit from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: stopit (installed: stopit 1.1.2) Handling tabulate from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: tabulate (installed: tabulate 0.9.0) Handling throttler from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: throttler (installed: throttler 1.2.2) Handling toposort >=1.10 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: toposort >=1.10 (installed: toposort 1.10) Handling wrapt from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: wrapt (installed: wrapt 1.16.0) Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: yte <2.0,>=1.5.1 (installed: yte 1.5.4) Handling azure-storage-blob ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-storage-blob ; extra == 'azure' (installed: azure-storage-blob 12.14.1) Handling azure-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-batch ; extra == 'azure' (installed: azure-batch 14.0.0) Handling azure-core ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-core ; extra == 'azure' (installed: azure-core 1.28.0) Handling azure-identity ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-identity ; extra == 'azure' (installed: azure-identity 1.14.0) Handling azure-mgmt-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: azure-mgmt-batch ; extra == 'azure' (installed: azure-mgmt-batch 17.0.0) Handling google-api-python-client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: google-api-python-client ; extra == 'google-cloud' (installed: google-api-python-client 2.112.0) Handling google-cloud-storage ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: google-cloud-storage ; extra == 'google-cloud' (installed: google-cloud-storage 2.14.0) Handling google-crc32c ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: google-crc32c ; extra == 'google-cloud' (installed: google-crc32c 1.1.2) Handling oauth2client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: oauth2client ; extra == 'google-cloud' (installed: oauth2client 4.1.3) Handling slacker ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: slacker ; extra == 'messaging' (installed: slacker 0.14.0) Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: eido ; extra == 'pep' Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake) Ignoring alien requirement: peppy ; extra == 'pep' Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake) Requirement satisfied: pygments ; extra == 'reports' (installed: pygments 2.17.2) + cat /builddir/build/BUILD/snakemake-7.32.4-3.fc40.x86_64-pyproject-buildrequires + rm -rfv snakemake-7.32.4.dist-info/ removed 'snakemake-7.32.4.dist-info/AUTHORS.rst' removed 'snakemake-7.32.4.dist-info/LICENSE.md' removed 'snakemake-7.32.4.dist-info/METADATA' removed 'snakemake-7.32.4.dist-info/entry_points.txt' removed 'snakemake-7.32.4.dist-info/top_level.txt' removed directory 'snakemake-7.32.4.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.si6ukC + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-7.32.4 + mkdir -p /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir Processing /builddir/build/BUILD/snakemake-7.32.4 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) running dist_info creating /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-755g5hjd/snakemake.egg-info writing /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-755g5hjd/snakemake.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-755g5hjd/snakemake.egg-info/dependency_links.txt writing entry points to /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-755g5hjd/snakemake.egg-info/entry_points.txt writing requirements to /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-755g5hjd/snakemake.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-755g5hjd/snakemake.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-755g5hjd/snakemake.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-755g5hjd/snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file '/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-755g5hjd/snakemake.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-modern-metadata-755g5hjd/snakemake-7.32.4.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: snakemake Building wheel for snakemake (pyproject.toml): started Running command Building wheel for snakemake (pyproject.toml) running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/snakemake copying snakemake/wrapper.py -> build/lib/snakemake copying snakemake/workflow.py -> build/lib/snakemake copying snakemake/utils.py -> build/lib/snakemake copying snakemake/target_jobs.py -> build/lib/snakemake copying snakemake/stats.py -> build/lib/snakemake copying snakemake/sourcecache.py -> build/lib/snakemake copying snakemake/shell.py -> build/lib/snakemake copying snakemake/script.py -> build/lib/snakemake copying snakemake/scheduler.py -> build/lib/snakemake copying snakemake/rules.py -> build/lib/snakemake copying snakemake/ruleinfo.py -> build/lib/snakemake copying snakemake/resources.py -> build/lib/snakemake copying snakemake/profiles.py -> build/lib/snakemake copying snakemake/persistence.py -> build/lib/snakemake copying snakemake/path_modifier.py -> build/lib/snakemake copying snakemake/parser.py -> build/lib/snakemake copying snakemake/output_index.py -> build/lib/snakemake copying snakemake/notebook.py -> build/lib/snakemake copying snakemake/modules.py -> build/lib/snakemake copying snakemake/logging.py -> build/lib/snakemake copying snakemake/jobs.py -> build/lib/snakemake copying snakemake/io.py -> build/lib/snakemake copying snakemake/interfaces.py -> build/lib/snakemake copying snakemake/gui.py -> build/lib/snakemake copying snakemake/exceptions.py -> build/lib/snakemake copying snakemake/decorators.py -> build/lib/snakemake copying snakemake/dag.py -> build/lib/snakemake copying snakemake/cwl.py -> build/lib/snakemake copying snakemake/checkpoints.py -> build/lib/snakemake copying snakemake/benchmark.py -> build/lib/snakemake copying snakemake/_version.py -> build/lib/snakemake copying snakemake/__main__.py -> build/lib/snakemake copying snakemake/__init__.py -> build/lib/snakemake creating build/lib/snakemake/unit_tests copying snakemake/unit_tests/__init__.py -> build/lib/snakemake/unit_tests creating build/lib/snakemake/template_rendering copying snakemake/template_rendering/yte.py -> build/lib/snakemake/template_rendering copying snakemake/template_rendering/jinja2.py -> build/lib/snakemake/template_rendering copying snakemake/template_rendering/__init__.py -> build/lib/snakemake/template_rendering creating build/lib/snakemake/report copying snakemake/report/rulegraph_spec.py -> build/lib/snakemake/report copying snakemake/report/__init__.py -> build/lib/snakemake/report creating build/lib/snakemake/remote copying snakemake/remote/zenodo.py -> build/lib/snakemake/remote copying snakemake/remote/webdav.py -> build/lib/snakemake/remote copying snakemake/remote/iRODS.py -> build/lib/snakemake/remote copying snakemake/remote/gridftp.py -> build/lib/snakemake/remote copying snakemake/remote/gfal.py -> build/lib/snakemake/remote copying snakemake/remote/dropbox.py -> build/lib/snakemake/remote copying snakemake/remote/__init__.py -> build/lib/snakemake/remote copying snakemake/remote/XRootD.py -> build/lib/snakemake/remote copying snakemake/remote/SFTP.py -> build/lib/snakemake/remote copying snakemake/remote/S3Mocked.py -> build/lib/snakemake/remote copying snakemake/remote/S3.py -> build/lib/snakemake/remote copying snakemake/remote/NCBI.py -> build/lib/snakemake/remote copying snakemake/remote/HTTP.py -> build/lib/snakemake/remote copying snakemake/remote/GS.py -> build/lib/snakemake/remote copying snakemake/remote/FTP.py -> build/lib/snakemake/remote copying snakemake/remote/EGA.py -> build/lib/snakemake/remote copying snakemake/remote/AzBlob.py -> build/lib/snakemake/remote creating build/lib/snakemake/linting copying snakemake/linting/snakefiles.py -> build/lib/snakemake/linting copying snakemake/linting/rules.py -> build/lib/snakemake/linting copying snakemake/linting/links.py -> build/lib/snakemake/linting copying snakemake/linting/__init__.py -> build/lib/snakemake/linting creating build/lib/snakemake/executors copying snakemake/executors/google_lifesciences_helper.py -> build/lib/snakemake/executors copying snakemake/executors/google_lifesciences.py -> build/lib/snakemake/executors copying snakemake/executors/ga4gh_tes.py -> build/lib/snakemake/executors copying snakemake/executors/flux.py -> build/lib/snakemake/executors copying snakemake/executors/common.py -> build/lib/snakemake/executors copying snakemake/executors/azure_batch.py -> build/lib/snakemake/executors copying snakemake/executors/__init__.py -> build/lib/snakemake/executors creating build/lib/snakemake/deployment copying snakemake/deployment/singularity.py -> build/lib/snakemake/deployment copying snakemake/deployment/env_modules.py -> build/lib/snakemake/deployment copying snakemake/deployment/containerize.py -> build/lib/snakemake/deployment copying snakemake/deployment/conda.py -> build/lib/snakemake/deployment copying snakemake/deployment/__init__.py -> build/lib/snakemake/deployment creating build/lib/snakemake/common copying snakemake/common/tbdstring.py -> build/lib/snakemake/common copying snakemake/common/__init__.py -> build/lib/snakemake/common creating build/lib/snakemake/caching copying snakemake/caching/remote.py -> build/lib/snakemake/caching copying snakemake/caching/local.py -> build/lib/snakemake/caching copying snakemake/caching/hash.py -> build/lib/snakemake/caching copying snakemake/caching/__init__.py -> build/lib/snakemake/caching creating build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/__init__.py -> build/lib/snakemake/unit_tests/templates creating build/lib/snakemake/report/template copying snakemake/report/template/__init__.py -> build/lib/snakemake/report/template creating build/lib/snakemake/report/data copying snakemake/report/data/timeline.py -> build/lib/snakemake/report/data copying snakemake/report/data/runtimes.py -> build/lib/snakemake/report/data copying snakemake/report/data/rules.py -> build/lib/snakemake/report/data copying snakemake/report/data/rulegraph.py -> build/lib/snakemake/report/data copying snakemake/report/data/results.py -> build/lib/snakemake/report/data copying snakemake/report/data/packages.py -> build/lib/snakemake/report/data copying snakemake/report/data/common.py -> build/lib/snakemake/report/data copying snakemake/report/data/categories.py -> build/lib/snakemake/report/data copying snakemake/report/data/__init__.py -> build/lib/snakemake/report/data creating build/lib/snakemake/report/template/components copying snakemake/report/template/components/__init__.py -> build/lib/snakemake/report/template/components creating build/lib/snakemake/executors/slurm copying snakemake/executors/slurm/slurm_submit.py -> build/lib/snakemake/executors/slurm copying snakemake/executors/slurm/slurm_jobstep.py -> build/lib/snakemake/executors/slurm copying snakemake/executors/slurm/__init__.py -> build/lib/snakemake/executors/slurm copying snakemake/report.css -> build/lib/snakemake copying snakemake/gui.html -> build/lib/snakemake copying snakemake/executors/jobscript.sh -> build/lib/snakemake/executors copying snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/lib/snakemake/unit_tests/templates copying snakemake/unit_tests/templates/common.py.jinja2 -> build/lib/snakemake/unit_tests/templates copying snakemake/report/template/style.css -> build/lib/snakemake/report/template copying snakemake/report/template/index.html.jinja2 -> build/lib/snakemake/report/template copying snakemake/report/template/logo.svg -> build/lib/snakemake/report/template copying snakemake/report/template/components/subcategory.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/stats.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/search_results.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/rule_info.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/rule_graph.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/result_view_button.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/result_info.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/report_info.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/navbar.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/menu.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/list_item.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/list_heading.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/icon.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/content.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/common.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/category.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/button.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/breadcrumbs.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/app.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/abstract_results.js -> build/lib/snakemake/report/template/components copying snakemake/report/template/components/abstract_menu.js -> build/lib/snakemake/report/template/components UPDATING build/lib/snakemake/_version.py set build/lib/snakemake/_version.py to '7.32.4' installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/_version.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/gui.html -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/report.css -> build/bdist.linux-x86_64/wheel/snakemake creating build/bdist.linux-x86_64/wheel/snakemake/caching copying build/lib/snakemake/caching/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/caching copying build/lib/snakemake/caching/hash.py -> build/bdist.linux-x86_64/wheel/snakemake/caching copying build/lib/snakemake/caching/local.py -> build/bdist.linux-x86_64/wheel/snakemake/caching copying build/lib/snakemake/caching/remote.py -> build/bdist.linux-x86_64/wheel/snakemake/caching creating build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/common copying build/lib/snakemake/common/tbdstring.py -> build/bdist.linux-x86_64/wheel/snakemake/common creating build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/conda.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/containerize.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/env_modules.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment copying build/lib/snakemake/deployment/singularity.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment creating build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/jobscript.sh -> build/bdist.linux-x86_64/wheel/snakemake/executors creating build/bdist.linux-x86_64/wheel/snakemake/executors/slurm copying build/lib/snakemake/executors/slurm/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/executors/slurm copying build/lib/snakemake/executors/slurm/slurm_jobstep.py -> build/bdist.linux-x86_64/wheel/snakemake/executors/slurm copying build/lib/snakemake/executors/slurm/slurm_submit.py -> build/bdist.linux-x86_64/wheel/snakemake/executors/slurm copying build/lib/snakemake/executors/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/azure_batch.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/common.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/flux.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/ga4gh_tes.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/google_lifesciences.py -> build/bdist.linux-x86_64/wheel/snakemake/executors copying build/lib/snakemake/executors/google_lifesciences_helper.py -> build/bdist.linux-x86_64/wheel/snakemake/executors creating build/bdist.linux-x86_64/wheel/snakemake/linting copying build/lib/snakemake/linting/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/linting copying build/lib/snakemake/linting/links.py -> build/bdist.linux-x86_64/wheel/snakemake/linting copying build/lib/snakemake/linting/rules.py -> build/bdist.linux-x86_64/wheel/snakemake/linting copying build/lib/snakemake/linting/snakefiles.py -> build/bdist.linux-x86_64/wheel/snakemake/linting creating build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/AzBlob.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/EGA.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/FTP.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/GS.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/HTTP.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/NCBI.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/S3.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/S3Mocked.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/SFTP.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/XRootD.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/dropbox.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/gfal.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/gridftp.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/iRODS.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/webdav.py -> build/bdist.linux-x86_64/wheel/snakemake/remote copying build/lib/snakemake/remote/zenodo.py -> build/bdist.linux-x86_64/wheel/snakemake/remote creating build/bdist.linux-x86_64/wheel/snakemake/report creating build/bdist.linux-x86_64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/categories.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/common.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/packages.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/results.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/rulegraph.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/rules.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/runtimes.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data copying build/lib/snakemake/report/data/timeline.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data creating build/bdist.linux-x86_64/wheel/snakemake/report/template copying build/lib/snakemake/report/template/logo.svg -> build/bdist.linux-x86_64/wheel/snakemake/report/template copying build/lib/snakemake/report/template/index.html.jinja2 -> build/bdist.linux-x86_64/wheel/snakemake/report/template copying build/lib/snakemake/report/template/style.css -> build/bdist.linux-x86_64/wheel/snakemake/report/template creating build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/abstract_menu.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/abstract_results.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/app.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/breadcrumbs.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/button.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/category.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/common.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/content.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/icon.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/list_heading.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/list_item.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/menu.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/navbar.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/report_info.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/result_info.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/result_view_button.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/rule_graph.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/rule_info.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/search_results.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/stats.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/subcategory.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/components/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components copying build/lib/snakemake/report/template/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report/template copying build/lib/snakemake/report/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report copying build/lib/snakemake/report/rulegraph_spec.py -> build/bdist.linux-x86_64/wheel/snakemake/report creating build/bdist.linux-x86_64/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/jinja2.py -> build/bdist.linux-x86_64/wheel/snakemake/template_rendering copying build/lib/snakemake/template_rendering/yte.py -> build/bdist.linux-x86_64/wheel/snakemake/template_rendering creating build/bdist.linux-x86_64/wheel/snakemake/unit_tests creating build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/common.py.jinja2 -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/templates/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates copying build/lib/snakemake/unit_tests/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests copying build/lib/snakemake/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/__main__.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/benchmark.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/checkpoints.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/cwl.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/dag.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/decorators.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/exceptions.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/gui.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/interfaces.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/io.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/jobs.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/logging.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/modules.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/notebook.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/output_index.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/parser.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/path_modifier.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/persistence.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/profiles.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/resources.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/ruleinfo.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/rules.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/scheduler.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/script.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/shell.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/sourcecache.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/stats.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/target_jobs.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/utils.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/workflow.py -> build/bdist.linux-x86_64/wheel/snakemake copying build/lib/snakemake/wrapper.py -> build/bdist.linux-x86_64/wheel/snakemake running install_egg_info running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.md' adding license file 'AUTHORS.rst' writing manifest file 'snakemake.egg-info/SOURCES.txt' Copying snakemake.egg-info to build/bdist.linux-x86_64/wheel/snakemake-7.32.4-py3.12.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/snakemake-7.32.4.dist-info/WHEEL creating '/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir/pip-wheel-py2y12vf/.tmp-_cuk0vx5/snakemake-7.32.4-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'snakemake/__init__.py' adding 'snakemake/__main__.py' adding 'snakemake/_version.py' adding 'snakemake/benchmark.py' adding 'snakemake/checkpoints.py' adding 'snakemake/cwl.py' adding 'snakemake/dag.py' adding 'snakemake/decorators.py' adding 'snakemake/exceptions.py' adding 'snakemake/gui.html' adding 'snakemake/gui.py' adding 'snakemake/interfaces.py' adding 'snakemake/io.py' adding 'snakemake/jobs.py' adding 'snakemake/logging.py' adding 'snakemake/modules.py' adding 'snakemake/notebook.py' adding 'snakemake/output_index.py' adding 'snakemake/parser.py' adding 'snakemake/path_modifier.py' adding 'snakemake/persistence.py' adding 'snakemake/profiles.py' adding 'snakemake/report.css' adding 'snakemake/resources.py' adding 'snakemake/ruleinfo.py' adding 'snakemake/rules.py' adding 'snakemake/scheduler.py' adding 'snakemake/script.py' adding 'snakemake/shell.py' adding 'snakemake/sourcecache.py' adding 'snakemake/stats.py' adding 'snakemake/target_jobs.py' adding 'snakemake/utils.py' adding 'snakemake/workflow.py' adding 'snakemake/wrapper.py' adding 'snakemake/caching/__init__.py' adding 'snakemake/caching/hash.py' adding 'snakemake/caching/local.py' adding 'snakemake/caching/remote.py' adding 'snakemake/common/__init__.py' adding 'snakemake/common/tbdstring.py' adding 'snakemake/deployment/__init__.py' adding 'snakemake/deployment/conda.py' adding 'snakemake/deployment/containerize.py' adding 'snakemake/deployment/env_modules.py' adding 'snakemake/deployment/singularity.py' adding 'snakemake/executors/__init__.py' adding 'snakemake/executors/azure_batch.py' adding 'snakemake/executors/common.py' adding 'snakemake/executors/flux.py' adding 'snakemake/executors/ga4gh_tes.py' adding 'snakemake/executors/google_lifesciences.py' adding 'snakemake/executors/google_lifesciences_helper.py' adding 'snakemake/executors/jobscript.sh' adding 'snakemake/executors/slurm/__init__.py' adding 'snakemake/executors/slurm/slurm_jobstep.py' adding 'snakemake/executors/slurm/slurm_submit.py' adding 'snakemake/linting/__init__.py' adding 'snakemake/linting/links.py' adding 'snakemake/linting/rules.py' adding 'snakemake/linting/snakefiles.py' adding 'snakemake/remote/AzBlob.py' adding 'snakemake/remote/EGA.py' adding 'snakemake/remote/FTP.py' adding 'snakemake/remote/GS.py' adding 'snakemake/remote/HTTP.py' adding 'snakemake/remote/NCBI.py' adding 'snakemake/remote/S3.py' adding 'snakemake/remote/S3Mocked.py' adding 'snakemake/remote/SFTP.py' adding 'snakemake/remote/XRootD.py' adding 'snakemake/remote/__init__.py' adding 'snakemake/remote/dropbox.py' adding 'snakemake/remote/gfal.py' adding 'snakemake/remote/gridftp.py' adding 'snakemake/remote/iRODS.py' adding 'snakemake/remote/webdav.py' adding 'snakemake/remote/zenodo.py' adding 'snakemake/report/__init__.py' adding 'snakemake/report/rulegraph_spec.py' adding 'snakemake/report/data/__init__.py' adding 'snakemake/report/data/categories.py' adding 'snakemake/report/data/common.py' adding 'snakemake/report/data/packages.py' adding 'snakemake/report/data/results.py' adding 'snakemake/report/data/rulegraph.py' adding 'snakemake/report/data/rules.py' adding 'snakemake/report/data/runtimes.py' adding 'snakemake/report/data/timeline.py' adding 'snakemake/report/template/__init__.py' adding 'snakemake/report/template/index.html.jinja2' adding 'snakemake/report/template/logo.svg' adding 'snakemake/report/template/style.css' adding 'snakemake/report/template/components/__init__.py' adding 'snakemake/report/template/components/abstract_menu.js' adding 'snakemake/report/template/components/abstract_results.js' adding 'snakemake/report/template/components/app.js' adding 'snakemake/report/template/components/breadcrumbs.js' adding 'snakemake/report/template/components/button.js' adding 'snakemake/report/template/components/category.js' adding 'snakemake/report/template/components/common.js' adding 'snakemake/report/template/components/content.js' adding 'snakemake/report/template/components/icon.js' adding 'snakemake/report/template/components/list_heading.js' adding 'snakemake/report/template/components/list_item.js' adding 'snakemake/report/template/components/menu.js' adding 'snakemake/report/template/components/navbar.js' adding 'snakemake/report/template/components/report_info.js' adding 'snakemake/report/template/components/result_info.js' adding 'snakemake/report/template/components/result_view_button.js' adding 'snakemake/report/template/components/rule_graph.js' adding 'snakemake/report/template/components/rule_info.js' adding 'snakemake/report/template/components/search_results.js' adding 'snakemake/report/template/components/stats.js' adding 'snakemake/report/template/components/subcategory.js' adding 'snakemake/template_rendering/__init__.py' adding 'snakemake/template_rendering/jinja2.py' adding 'snakemake/template_rendering/yte.py' adding 'snakemake/unit_tests/__init__.py' adding 'snakemake/unit_tests/templates/__init__.py' adding 'snakemake/unit_tests/templates/common.py.jinja2' adding 'snakemake/unit_tests/templates/ruletest.py.jinja2' adding 'snakemake-7.32.4.dist-info/AUTHORS.rst' adding 'snakemake-7.32.4.dist-info/LICENSE.md' adding 'snakemake-7.32.4.dist-info/METADATA' adding 'snakemake-7.32.4.dist-info/WHEEL' adding 'snakemake-7.32.4.dist-info/entry_points.txt' adding 'snakemake-7.32.4.dist-info/top_level.txt' adding 'snakemake-7.32.4.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Building wheel for snakemake (pyproject.toml): finished with status 'done' Created wheel for snakemake: filename=snakemake-7.32.4-py3-none-any.whl size=380737 sha256=41de792549ed495ffb1d247493ac027c4562811976c7e4926e356b0e9fb7164f Stored in directory: /builddir/.cache/pip/wheels/53/8b/cb/3dce719624720fd97280e70d5666cec6215f6d7c6704f015ae Successfully built snakemake + find docs -type f -name '*.svg' + read -r fn ++ dirname docs/executor_tutorial/workflow/quals.svg ++ basename docs/executor_tutorial/workflow/quals.svg .svg + rsvg-convert --format=pdf --output=docs/executor_tutorial/workflow/quals.pdf docs/executor_tutorial/workflow/quals.svg + read -r fn + find docs/executor_tutorial -type f -exec gawk '/\.svg/ { print FILENAME; nextfile }' '{}' + + xargs -r -t sed -r -i 's/(image::.*)\.svg/\1\.pdf/' sed -r -i 's/(image::.*)\.svg/\1\.pdf/' docs/executor_tutorial/google_lifesciences.rst docs/executor_tutorial/azure_batch.rst + PYTHONPATH=/builddir/build/BUILD/snakemake-7.32.4 + /usr/bin/make -O -j4 V=1 VERBOSE=1 -C docs latexpdf 'SPHINXOPTS=-j${RPM_BUILD_NCPUS}' make: Entering directory '/builddir/build/BUILD/snakemake-7.32.4/docs' sphinx-build -b latex -d _build/doctrees -j4 . _build/latex Running Sphinx v7.2.6 making output directory... done myst v2.0.0: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions=set(), disable_syntax=[], all_links_external=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=0, heading_slug_func=None, html_meta={}, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, suppress_warnings=[], highlight_code_blocks=True) building [mo]: targets for 0 po files that are out of date writing output... building [latex]: all documents updating environment: [new config] 38 added, 0 changed, 0 removed reading sources... [100%] tutorial/short .. tutorial/tutorial looking for now-outdated files... none found pickling environment... done checking consistency... done copying TeX support files... copying TeX support files... done processing Snakemake.tex... index getting_started/installation tutorial/tutorial tutorial/setup tutorial/basics tutorial/advanced tutorial/additional_features tutorial/short executor_tutorial/tutorial executor_tutorial/azure_batch executor_tutorial/azure_aks executor_tutorial/google_lifesciences executor_tutorial/flux snakefiles/best_practices executing/cli executing/cluster executing/cloud executing/grouping executing/caching executing/interoperability executing/monitoring snakefiles/writing_snakefiles snakefiles/rules snakefiles/configuration snakefiles/modularization snakefiles/remote_files snakefiles/utils snakefiles/deployment snakefiles/reporting snakefiles/testing snakefiles/foreign_wms project_info/citations project_info/more_resources project_info/faq project_info/contributing project_info/authors project_info/history project_info/license resolving references... done writing... done copying images... [100%] project_info/img/idea.png build succeeded, 491 warnings. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). Running LaTeX files through pdflatex... /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/google_lifesciences.rst:13: WARNING: duplicate label setup, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/flux.rst /builddir/build/BUILD/snakemake-7.32.4/docs/index.rst:89: WARNING: duplicate label resources, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/flux.rst /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here". /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:688: WARNING: Title underline too short. How can I avoid system /tmp to be used when combining singularity and conda? ------------------------------------------------------ /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/faq.rst:688: WARNING: Title underline too short. How can I avoid system /tmp to be used when combining singularity and conda? ------------------------------------------------------ /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/short.rst:376: WARNING: duplicate label step 2, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/short.rst /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/short.rst:396: WARNING: duplicate label step 3, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/short.rst /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/short.rst:416: WARNING: duplicate label step 4, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/short.rst /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/short.rst:435: WARNING: duplicate label step 5, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/short.rst /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/short.rst:457: WARNING: duplicate label step 6, other instance in 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malformed hyperlink target. /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/advanced.rst:82: WARNING: duplicate label exercise, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/additional_features.rst /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/advanced.rst:177: WARNING: duplicate label exercise, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/advanced.rst /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/advanced.rst:213: WARNING: duplicate label exercise, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/advanced.rst /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/advanced.rst:250: WARNING: duplicate label exercise, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/advanced.rst /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/advanced.rst:304: WARNING: duplicate label exercise, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/advanced.rst 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profiles, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cli.rst /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cloud.rst:72: WARNING: duplicate label kubernetes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cli.rst /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cloud.rst:233: WARNING: duplicate label machine types, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cloud.rst /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cloud.rst:406: WARNING: duplicate label execution, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cli.rst /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cloud.rst:490: WARNING: duplicate label execution, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cloud.rst /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cluster.rst:13: WARNING: Title overline too short. -------------- Executing on SLURM clusters -------------- /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cluster.rst:5: WARNING: duplicate label cluster, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cli.rst /builddir/build/BUILD/snakemake-7.32.4/docs/executing/monitoring.rst:5: WARNING: duplicate label monitoring, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executing/monitoring.rst /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_aks.rst:184: ERROR: Unexpected indentation. /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:47: WARNING: Title underline too short. Create an Azure Storage Account and upload example data ::::::::::::::::::::::::::::::::::::::::::::::: /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:47: WARNING: Title underline too short. Create an Azure Storage Account and upload example data ::::::::::::::::::::::::::::::::::::::::::::::: /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:119: WARNING: Title underline too short. Azure Blob Storage Warning: ::::::::::::::::::: /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:119: WARNING: Title underline too short. Azure Blob Storage Warning: ::::::::::::::::::: /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:367: WARNING: Title underline too short. Defining a Start Task ::::: /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:367: WARNING: Title underline too short. Defining a Start Task ::::: /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:386: WARNING: Title underline too short. Autoscaling and Task Distribution ::::: /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:386: WARNING: Title underline too short. Autoscaling and Task Distribution ::::: /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:28: WARNING: duplicate label setup, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_aks.rst /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:163: WARNING: duplicate label running the workflow, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_aks.rst /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1615: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1636: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1642: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1668: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1672: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1678: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1687: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1695: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1750: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1757: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1769: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1777: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1800: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1804: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1814: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1821: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1836: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1841: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1848: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1863: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1902: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1909: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1924: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1931: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1939: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1943: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1952: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1958: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1965: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1976: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1993: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:1997: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2024: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2029: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2050: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2057: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2071: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2082: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2095: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2104: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2129: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2138: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2165: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2171: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2186: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2192: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2234: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2238: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2294: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2311: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2317: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2351: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2398: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2408: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2417: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2428: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2452: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2466: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2475: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2493: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2502: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2507: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2533: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2546: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2552: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2562: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2582: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2636: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2652: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2661: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2684: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2704: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2735: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2768: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2789: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2808: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2837: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2937: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:2946: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header] /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:18: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:25: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:32: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:53: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:63: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:70: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:75: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:82: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:92: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:102: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:112: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:119: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:126: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:131: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:140: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:150: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:157: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:164: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:172: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:179: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:184: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:191: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:198: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:204: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:211: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:218: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:225: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:234: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:241: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:249: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:255: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:261: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:270: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:280: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:287: WARNING: duplicate label performance improvements, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:292: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:299: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:304: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:313: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:320: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:327: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:333: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:338: WARNING: duplicate label performance improvements, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:345: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:350: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:358: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:364: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:373: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:381: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md:401: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.4/docs/project_info/history.md 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name: "here". /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/configuration.rst:55: WARNING: malformed hyperlink target. /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/modularization.rst:7: WARNING: Duplicate explicit target name: "cwl". /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/remote_files.rst:653: WARNING: Inline literal start-string without end-string. /builddir/build/BUILD/snakemake-7.32.4/docs/tutorial/basics.rst:394: WARNING: undefined label: '.. _snakefiles-rules' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/best_practices.rst:22: WARNING: undefined label: 'snakefiles_tabular_configuration' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/best_practices.rst:22: WARNING: undefined label: 'snakefiles_peps' /builddir/build/BUILD/snakemake-7.32.4/docs/executing/cluster.rst:65: WARNING: undefined label: 'snakefiles-mpi' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/rules.rst:316: WARNING: undefined label: 'user_manual-snakemake_options' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/rules.rst:412: WARNING: undefined label: 'user_manual-snakemake_options' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/rules.rst:433: WARNING: undefined label: 'resources_remote_execution' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/rules.rst:441: WARNING: undefined label: 'resources_remote_execution' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/rules.rst:1108: WARNING: undefined label: 'snakefiles_external-scripts' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/rules.rst:1290: WARNING: undefined label: 'snakefiles_input-functions' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/rules.rst:1362: WARNING: undefined label: 'snakefiles_ensure' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/rules.rst:1951: WARNING: undefined label: 'job-grouping' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/rules.rst:1951: WARNING: undefined label: 'job-grouping' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/configuration.rst:35: WARNING: undefined label: 'api_reference_snakemake' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/utils.rst:7: WARNING: undefined label: 'utils-api' /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/foreign_wms.rst:30: WARNING: undefined label: 'snakefiles-local-rule' WARNING: Could not fetch remote image: https://img.shields.io/badge/Gitpod-ready--to--code-blue?logo=gitpod [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /badge/Gitpod-ready--to--code-blue?logo=gitpod (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/conda/dn/bioconda/snakemake.svg?label=Bioconda [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /conda/dn/bioconda/snakemake.svg?label=Bioconda (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/pypi/pyversions/snakemake.svg [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /pypi/pyversions/snakemake.svg (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/pypi/v/snakemake.svg [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /pypi/v/snakemake.svg (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/github/workflow/status/snakemake/snakemake/Publish%20to%20Docker%20Hub?color=blue&label=docker%20container&branch=main [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /github/workflow/status/snakemake/snakemake/Publish%20to%20Docker%20Hub?color=blue&label=docker%20container&branch=main (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://github.com/snakemake/snakemake/workflows/CI/badge.svg?branch=main&label=tests [HTTPSConnectionPool(host='github.com', port=443): Max retries exceeded with url: /snakemake/snakemake/workflows/CI/badge.svg?branch=main&label=tests (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/badge/stack-overflow-orange.svg [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /badge/stack-overflow-orange.svg (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/twitter/follow/johanneskoester.svg?style=social&label=Follow [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /twitter/follow/johanneskoester.svg?style=social&label=Follow (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/discord/753690260830945390?label=discord%20chat [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /discord/753690260830945390?label=discord%20chat (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/github/stars/snakemake/snakemake?style=social [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /github/stars/snakemake/snakemake?style=social (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] WARNING: Could not fetch remote image: https://img.shields.io/badge/snakemake-≥5.6.0-brightgreen.svg?style=flat [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /badge/snakemake-%E2%89%A55.6.0-brightgreen.svg?style=flat (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))] /builddir/build/BUILD/snakemake-7.32.4/docs/executor_tutorial/azure_batch.rst:266: WARNING: Lexing literal_block '# required env variables\nexport AZ_BLOB_PREFIX=snakemake-tutorial\nexport AZ_BATCH_ACCOUNT_URL="${batch_account_url}"\nexport AZ_BATCH_ACCOUNT_KEY="${az_batch_account_key}"\nexport AZ_BLOB_ACCOUNT_URL="${storage_account_url_with_sas}"\n\n# optional environment variables with defaults listed\n\n# network and identity\n# export BATCH_POOL_SUBNET_ID=\n# export BATCH_MANAGED_IDENTITY_RESOURCE_ID=\n# export BATCH_MANAGED_IDENTITY_CLIENT_ID=\n\n# if unset, default is "classic"\n# export BATCH_NODE_COMMUNICATION_SIMPLIFIED=true\n\n# don\'t recommend changing\n# export BATCH_POOL_IMAGE_PUBLISHER=microsoft-azure-batch\n# export BATCH_POOL_IMAGE_OFFER=ubuntu-server-container\n# export BATCH_POOL_IMAGE_SKU=20-04-lts\n# export BATCH_POOL_RESOURCE_FILE_PREFIX=resource-files\n\n# export BATCH_POOL_VM_CONTAINER_IMAGE=ubuntu\n# export BATCH_POOL_VM_NODE_AGENT_SKU_ID="batch.node.ubuntu 20.04"\n\n# can be used to add a startup task to the batch nodes formatted as an sas url to a bash script\n# export BATCH_NODE_START_TASK_SAS_URL=\n\n# can be useful to alter task distribution across nodes\n\n# export BATCH_POOL_VM_SIZE=Standard_D2_v3\n# export BATCH_NODE_FILL_TYPE=spread\n# export BATCH_POOL_NODE_COUNT=1\n# export BATCH_TASKS_PER_NODE=1\n\n# container registry configuration to pull container image from custom registry\n# export BATCH_CONTAINER_REGISTRY_URL=\n# export BATCH_CONTAINER_REGISTRY_USER=\n# export BATCH_CONTAINER_REGISTRY_PASS=\n\nsnakemake \\\n --jobs 3 \\\n -rpf --verbose --default-remote-prefix $AZ_BLOB_PREFIX \\\n --use-conda \\\n --default-remote-provider AzBlob \\\n --envvars AZ_BLOB_ACCOUNT_URL \\\n --az-batch \\\n --container-image snakemake/snakemake \\\n --az-batch-account-url $AZ_BATCH_ACCOUNT_URL' as "console" resulted in an error at token: "'". Retrying in relaxed mode. /builddir/build/BUILD/snakemake-7.32.4/docs/snakefiles/rules.rst:2414: WARNING: Pygments lexer name 'jinja2' is not known make: Leaving directory '/builddir/build/BUILD/snakemake-7.32.4/docs' /usr/bin/make -C _build/latex all-pdf make[1]: Entering directory '/builddir/build/BUILD/snakemake-7.32.4/docs/_build/latex' latexmk -pdf -dvi- -ps- 'Snakemake.tex' Rc files read: /etc/latexmkrc latexmkrc Latexmk: This is Latexmk, John Collins, 24 Dec. 2023. Version 4.82. No existing .aux file, so I'll make a simple one, and require run of *latex. Latexmk: applying rule 'pdflatex'... 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[165] [166] [167] [168] [169] [170] [171] [172] Underfull \hbox (badness 10000) in paragraph at lines 11299--11301 []\TU/FreeSerif(0)/m/n/10 When used in conjunction with \TU/FreeMono(0)/m/n/10 NCBI.RemoteProvider().search()\TU/FreeSerif(0)/m/n/10 , Snakemake and \TU/FreeM ono(0)/m/n/10 NCBI. Overfull \vbox (1.03299pt too high) detected at line 11355 [173] [174] Underfull \hbox (badness 5133) in paragraph at lines 11479--11486 []\TU/FreeSerif(0)/m/n/10 The default location for the configuration file is \T U/FreeMono(0)/m/n/10 ~/.irods/irods_environment.json\TU/FreeSerif(0)/m/n/10 . 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[240] [241] [242] [243] [244] Underfull \hbox (badness 10000) in paragraph at lines 16974--16976 []\TU/FreeSerif(0)/m/n/10 provide temporary IPYTHONDIR for notebook execution i n order to avoid race conditions in [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] [255] [256] [257] [258] [259] [260] [261] [262] [263] [264] [265] [266] [267] [268] Underfull \hbox (badness 10000) in paragraph at lines 19438--19441 []\TU/FreeSerif(0)/m/n/10 Allow URL to local git repo with wrapper directive (\ TU/FreeMono(0)/m/n/10 git+file:///path/to/your/repo/ [269] [270] [271] [272] [273] [274] [275] [276] [277] [278] Underfull \hbox (badness 10000) in paragraph at lines 20504--20510 []\TU/FreeSerif(0)/m/n/10 When submitting cluster jobs (either through [][]\TU/ FreeMono(0)/m/n/10 cluster \TU/FreeSerif(0)/m/n/10 or [][]\TU/FreeMono(0)/m/n/1 0 drmaa\TU/FreeSerif(0)/m/n/10 ), you can now use [279] [280] [281] No file Snakemake.ind. Package sphinx Warning: The package pict2e is required for rounded boxes. (sphinx) As it does not seem to be available on your system, (sphinx) options setting radii have all been ignored. Package sphinx Warning: The package ellipse is required for elliptical corners. (sphinx) As it does not seem to be available on your system, (sphinx) all non-straight corners have used circle arcs.. [282] (./Snakemake.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `Snakemake.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information) Output written on Snakemake.pdf (286 pages). Transcript written on Snakemake.log. Latexmk: Getting log file 'Snakemake.log' Latexmk: Examining 'Snakemake.fls' Latexmk: Examining 'Snakemake.log' Latexmk: Index file 'Snakemake.idx' was written Latexmk: References changed. Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'Snakemake.pdf' Latexmk: applying rule 'makeindex Snakemake.idx'... Rule 'makeindex Snakemake.idx': Reasons for rerun Category 'other': Rerun of 'makeindex Snakemake.idx' forced or previously required ------------ Run number 1 of rule 'makeindex Snakemake.idx' ------------ ------------ Running 'internal xindy -L english -C utf8 -M sphinx.xdy -o "Snakemake.ind" "Snakemake.idx"' ------------ Latexmk: calling xindy( -L english -C utf8 -M sphinx.xdy -o "Snakemake.ind" "Snakemake.idx" ) Latexmk: applying rule 'pdflatex'... Rule 'pdflatex': Reasons for rerun Changed files or newly in use/created: Snakemake.aux Snakemake.ind Snakemake.out Snakemake.toc ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'xelatex -recorder "Snakemake.tex"' ------------ This is XeTeX, Version 3.141592653-2.6-0.999995 (TeX Live 2023) (preloaded format=xelatex) restricted \write18 enabled. entering extended mode (./Snakemake.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-02-22> (./sphinxmanual.cls Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty Package cmap Warning: pdftex not detected - exiting. ) (/usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec.sty (/usr/share/texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty (/usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3.sty (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-xetex.def))) (/usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec-xetex.sty (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/fontspec/fontspec.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. 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(sphinx) All non-straight corners will use circle arcs.. ) (./sphinxlatexadmonitions.sty (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty)) (./sphinxlatexliterals.sty (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty)) (./sphinxlatexshadowbox.sty) (./sphinxlatexcontainers.sty) (./sphinxhighlight.sty) (./sphinxlatextables.sty (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (/usr/share/texlive/texmf-dist/tex/latex/colortbl/colortbl.sty) (/usr/share/texlive/texmf-dist/tex/latex/booktabs/booktabs.sty)) (./sphinxlatexnumfig.sty) (./sphinxlatexlists.sty) (./sphinxpackagefootnote.sty ) (./sphinxlatexindbibtoc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)) (./sphinxlatexstylepage.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip-2001-04-09.sty)) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)) (./sphinxlatexstyleheadings.sty (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty)) (./sphinxlatexstyletext.sty) (./sphinxlatexobjects.sty)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hxetex.def (/usr/share/texlive/texmf-dist/tex/generic/stringenc/stringenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (./sphinxmessages.sty) Writing index file Snakemake.idx (./Snakemake.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) *geometry* driver: auto-detecting *geometry* detected driver: xetex (./Snakemake.out) (./Snakemake.out) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1] [2] (./Snakemake.toc) [1] [2] [1] [2] Chapter 1. [3] [4] Chapter 2. [5] [6] Chapter 3. [7] [8] Chapter 4. [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] Overfull \vbox (1.78299pt too high) detected at line 2638 [43] [44] [45] [46] Overfull \hbox (16.155pt too wide) in paragraph at lines 2923--2925 []|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_IMAGE_PUBLISHER| Overfull \hbox (40.465pt too wide) in paragraph at lines 2953--2955 []|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_VM_CONTAINER_IMAGE| Overfull \hbox (52.17499pt too wide) in paragraph at lines 2963--2965 []|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_VM_NODE_AGENT_SKU_ID| Overfull \hbox (42.36499pt too wide) in paragraph at lines 3003--3005 []|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_RESOURCE_FILE_PREFIX| Overfull \hbox (34.435pt too wide) in paragraph at lines 3013--3015 []|\TU/FreeSerif(0)/m/n/10 BATCH_NODE_START_TASK_SAS_URL| Overfull \hbox (72.44499pt too wide) in paragraph at lines 3033--3035 []|\TU/FreeSerif(0)/m/n/10 BATCH_NODE_COMMUNICATION_SIMPLIFIED| Overfull \hbox (67.97499pt too wide) in paragraph at lines 3053--3055 []|\TU/FreeSerif(0)/m/n/10 BATCH_MANAGED_IDENTITY_RESOURCE_ID| Overfull \hbox (51.485pt too wide) in paragraph at lines 3063--3065 []|\TU/FreeSerif(0)/m/n/10 BATCH_MANAGED_IDENTITY_CLIENT_ID| Overfull \hbox (28.965pt too wide) in paragraph at lines 3073--3075 []|\TU/FreeSerif(0)/m/n/10 BATCH_CONTAINER_REGISTRY_URL| Overfull \hbox (34.045pt too wide) in paragraph at lines 3083--3085 []|\TU/FreeSerif(0)/m/n/10 BATCH_CONTAINER_REGISTRY_USER| Overfull \hbox (31.625pt too wide) in paragraph at lines 3093--3095 []|\TU/FreeSerif(0)/m/n/10 BATCH_CONTAINER_REGISTRY_PASS| [47] Overfull \vbox (0.72789pt too high) detected at line 3160 [48] Overfull \vbox (1.98596pt too high) detected at line 3201 [49] Underfull \vbox (badness 10000) detected at line 3201 Overfull \vbox (1.98598pt too high) detected at line 3201 [50] Underfull \hbox (badness 10000) in paragraph at lines 3235--3239 \TU/FreeSerif(0)/m/n/10 The azure batch executor supports autoscaling of the ba tch nodes by including the flag [51] [52] Underfull \hbox (badness 10000) in paragraph at lines 3376--3388 []\TU/FreeSerif(0)/m/n/10 There is a lot going on here, so let’s unpack it: thi s creates an [][]auto-scaling Kubernetes cluster[][] [53] [54] [55] [56] [57] Overfull \vbox (1.98596pt too high) detected at line 3840 [58] [59] [60] Underfull \vbox (badness 10000) detected at line 4080 Overfull \vbox (1.98598pt too high) detected at line 4080 [61] Underfull \vbox (badness 10000) detected at line 4080 Overfull \vbox (1.98598pt too high) detected at line 4080 [62] [63] [64] [65] [66] Underfull \vbox (badness 10000) detected at line 4358 Underfull \vbox (badness 10000) detected at line 4358 [67] Underfull \vbox (badness 10000) detected at line 4358 Overfull \vbox (1.98598pt too high) detected at line 4358 [68] Underfull \vbox (badness 1565) detected at line 4404 [69] [70] Overfull \vbox (2.98596pt too high) detected at line 4504 [71] [72] [73] Underfull \vbox (badness 2126) detected at line 4740 [74] [75] [76] [77] [78] Overfull \vbox (2.033pt too high) detected at line 5158 [79] [80] [81] [82] [83] [84] [85] [86] [87] [88] Overfull \hbox (11.06543pt too wide) in paragraph at lines 5685--5687 []\TU/FreeSerif(0)/m/n/10 Target particular jobs by RULE:WILDCARD1=VALUE,WILDCA RD2=VALUE,… [89] [90] [91] [92] [93] Underfull \hbox (badness 10000) in paragraph at lines 5946--5948 []\TU/FreeSerif(0)/m/n/10 Additional tibanna config e.g. –tibanna-config spot_i nstance=true sub- [94] [95] [96] Underfull \hbox (badness 10000) in paragraph at lines 6273--6273 []\TU/FreeSans(0)/m/n/10 Snakemake re- Overfull \hbox (0.88507pt too wide) in paragraph at lines 6273--6273 []\TU/FreeMono(0)/m/n/10 slurm_partition| Overfull \hbox (3.79732pt too wide) in paragraph at lines 6273--6273 [][]\TU/FreeMono(0)/m/n/10 c\TU/FreeSerif(0)/m/n/10 /[][]\TU/FreeMono(0)/m/n/10 cpus[]per[]task| [97] [98] [99] [100] [101] [102] [103] [104] [105] [106] [107] Underfull \hbox (badness 10000) in paragraph at lines 7013--7017 []\TU/FreeSerif(0)/m/n/10 The azure batch executor supports autoscaling of the batch nodes by including the flag [108] [109] Underfull \hbox (badness 10000) in paragraph at lines 7213--7216 []|\TU/FreeSerif(0)/m/n/10 Snakemake gets the status of panoptes. Underfull \hbox (badness 6859) in paragraph at lines 7213--7216 \TU/FreeSerif(0)/m/n/10 Snakemake continues to run if the status Underfull \hbox (badness 10000) in paragraph at lines 7230--7232 []|\TU/FreeMono(0)/m/n/10 / Overfull \hbox (9.78429pt too wide) in paragraph at lines 7230--7232 \TU/FreeMono(0)/m/n/10 update_workflow_status| [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] [121] [122] [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] Underfull \hbox (badness 5652) in paragraph at lines 8976--8980 \TU/FreeSerif(0)/m/n/10 Snakemake tracks the code that was used to create your files. In combination with [][]\TU/FreeMono(0)/m/n/10 summary \TU/FreeSerif(0)/ m/n/10 or [137] [138] [139] [140] [141] [142] [143] [144] Overfull \vbox (2.64099pt too high) detected at line 9545 [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] Overfull \vbox (0.688pt too high) detected at line 10609 [162] [163] [164] [165] [166] [167] [168] [169] [170] [171] [172] Underfull \hbox (badness 10000) in paragraph at lines 11299--11301 []\TU/FreeSerif(0)/m/n/10 When used in conjunction with \TU/FreeMono(0)/m/n/10 NCBI.RemoteProvider().search()\TU/FreeSerif(0)/m/n/10 , Snakemake and \TU/FreeM ono(0)/m/n/10 NCBI. Overfull \vbox (1.03299pt too high) detected at line 11355 [173] [174] Underfull \hbox (badness 5133) in paragraph at lines 11479--11486 []\TU/FreeSerif(0)/m/n/10 The default location for the configuration file is \T U/FreeMono(0)/m/n/10 ~/.irods/irods_environment.json\TU/FreeSerif(0)/m/n/10 . T he \TU/FreeMono(0)/m/n/10 Re- Underfull \hbox (badness 10000) in paragraph at lines 11479--11486 \TU/FreeMono(0)/m/n/10 moteProvider() \TU/FreeSerif(0)/m/n/10 class accepts the parameter \TU/FreeMono(0)/m/n/10 irods_env_file \TU/FreeSerif(0)/m/n/10 where an alternative path to the [175] [176] [177] Underfull \hbox (badness 10000) in paragraph at lines 11628--11634 \TU/FreeSerif(0)/m/n/10 If you need to access a deposition with restricted acce ss, you have to additionally provide a \TU/FreeMono(0)/m/n/10 re- [178] [179] Underfull \hbox (badness 5878) in paragraph at lines 11786--11792 []\TU/FreeSerif(0)/m/n/10 First, we load a local configuration file. Next, we d efine the module \TU/FreeMono(0)/m/n/10 dna_seq \TU/FreeSerif(0)/m/n/10 to be l oaded from [180] Overfull \vbox (2.98596pt too high) detected at line 11881 [181] [182] [183] [184] [185] [186] [187] [188] [189] [190] [191] [192] [193] [194] [195] Overfull \vbox (2.0pt too high) has occurred while \output is active [196] [197] [198] [199] [200] [201] [202] [203] [204] [205] [206] [207] [208] [209] [210] Underfull \vbox (badness 10000) detected at line 13935 Overfull \vbox (1.98598pt too high) detected at line 13935 [211] [212] Underfull \hbox (badness 10000) in paragraph at lines 14076--14079 []\TU/FreeSerif(0)/m/n/10 Provide hyperlink targets, at least for the first two section levels. For this, use the format [213] [214] [215] [216] [217] [218] [219] [220] [221] [222] [223] [224] [225] [226] [227] [228] [229] [230] [231] [232] [233] [234] [235] [236] [237] [238] [239] Missing character: There is no ⚠ (U+26A0) in font [FreeSansBold.otf]/OT:script= latn;language=dflt;! [240] [241] [242] [243] [244] Underfull \hbox (badness 10000) in paragraph at lines 16974--16976 []\TU/FreeSerif(0)/m/n/10 provide temporary IPYTHONDIR for notebook execution i n order to avoid race conditions in [245] [246] [247] [248] [249] [250] [251] [252] [253] [254] [255] [256] [257] [258] [259] [260] [261] [262] [263] [264] [265] [266] [267] [268] Underfull \hbox (badness 10000) in paragraph at lines 19438--19441 []\TU/FreeSerif(0)/m/n/10 Allow URL to local git repo with wrapper directive (\ TU/FreeMono(0)/m/n/10 git+file:///path/to/your/repo/ [269] [270] [271] [272] [273] [274] [275] [276] [277] [278] Underfull \hbox (badness 10000) in paragraph at lines 20504--20510 []\TU/FreeSerif(0)/m/n/10 When submitting cluster jobs (either through [][]\TU/ FreeMono(0)/m/n/10 cluster \TU/FreeSerif(0)/m/n/10 or [][]\TU/FreeMono(0)/m/n/1 0 drmaa\TU/FreeSerif(0)/m/n/10 ), you can now use [279] [280] [281] (./Snakemake.ind) Package sphinx Warning: The package pict2e is required for rounded boxes. (sphinx) As it does not seem to be available on your system, (sphinx) options setting radii have all been ignored. Package sphinx Warning: The package ellipse is required for elliptical corners. (sphinx) As it does not seem to be available on your system, (sphinx) all non-straight corners have used circle arcs.. [282] (./Snakemake.aux) ) (see the transcript file for additional information) Output written on Snakemake.pdf (286 pages). Transcript written on Snakemake.log. Latexmk: Getting log file 'Snakemake.log' Latexmk: Examining 'Snakemake.fls' Latexmk: Examining 'Snakemake.log' Latexmk: Index file 'Snakemake.idx' was written Latexmk: Log file says output to 'Snakemake.pdf' Latexmk: Summary of warnings from last run of *latex: =====Latex reported missing or unavailable character(s). =====See log file for details. Latexmk: All targets () are up-to-date make[1]: Leaving directory '/builddir/build/BUILD/snakemake-7.32.4/docs/_build/latex' make: Entering directory '/builddir/build/BUILD/snakemake-7.32.4/docs' pdflatex finished; the PDF files are in _build/latex. make: Leaving directory '/builddir/build/BUILD/snakemake-7.32.4/docs' Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Q44fMf Latexmk: Missing input file 'Snakemake.toc' (or dependence on it) from following: No file Snakemake.toc. Latexmk: Missing input file 'Snakemake.ind' (or dependence on it) from following: No file Snakemake.ind. Latexmk: ====Undefined refs and citations with line #s in .tex file: Missing character: There is no ⚠ (U+26A0) in font [FreeSansBold.otf]/OT:script= Missing character: There is no ⚠ (U+26A0) in font [FreeSansBold.otf]/OT:script=latn;language=dflt;! + RPM_EC=0 ++ jobs -p + exit 0 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64 ++ dirname /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-7.32.4 ++ xargs basename --multiple ++ ls /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir/snakemake-7.32.4-py3-none-any.whl ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=snakemake==7.32.4 + '[' -z snakemake==7.32.4 ']' + TMPDIR=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir snakemake==7.32.4 Using pip 23.3.1 from /usr/lib/python3.12/site-packages/pip (python 3.12) Looking in links: /builddir/build/BUILD/snakemake-7.32.4/pyproject-wheeldir Processing ./pyproject-wheeldir/snakemake-7.32.4-py3-none-any.whl Installing collected packages: snakemake Creating /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/bin changing mode of /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/bin/snakemake to 755 changing mode of /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/bin/snakemake-bash-completion to 755 Successfully installed snakemake-7.32.4 + '[' -d /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/bin ']' + '[' -z sP ']' + shebang_flags=-kasP + /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/bin/snakemake /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/bin/snakemake-bash-completion /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/bin/snakemake: updating /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/bin/snakemake-bash-completion: updating + rm -rfv /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/bin/__pycache__ + rm -f /builddir/build/BUILD/snakemake-7.32.4-3.fc40.x86_64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/lib/python3.12/site-packages ']' + site_dirs+=("/usr/lib/python3.12/site-packages") + '[' /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/lib64/python3.12/site-packages '!=' /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/lib/python3.12/site-packages ']' + '[' -d /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/lib64/python3.12/site-packages ']' + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64$site_dir/*.dist-info + echo '%ghost /usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64 --record /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/RECORD --output /builddir/build/BUILD/snakemake-7.32.4-3.fc40.x86_64-pyproject-record + rm -fv /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/RECORD removed '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/RECORD' + rm -fv /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/REQUESTED removed '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-7.32.4.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/snakemake-7.32.4-3.fc40.x86_64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_PERCENTAGES_COUNT=2 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/snakemake-7.32.4-3.fc40.x86_64-pyproject-files --output-modules /builddir/build/BUILD/snakemake-7.32.4-3.fc40.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64 --sitelib /usr/lib/python3.12/site-packages --sitearch /usr/lib64/python3.12/site-packages --python-version 3.12 --pyproject-record /builddir/build/BUILD/snakemake-7.32.4-3.fc40.x86_64-pyproject-record --prefix /usr -l snakemake + install -d /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/share/man/man1 + PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/bin + PYTHONPATH=/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/lib/python3.12/site-packages + help2man --no-info '--name=Metapackage for snakemake: azure extras' snakemake + install -d /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/share/bash-completion/completions + touch Snakefile + PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/bin + PYTHONPATH=/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/lib/python3.12/site-packages + snakemake --bash-completion + install -t /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/share/nano -D -m 0644 -p misc/nano/syntax/snakemake.nanorc + install -d /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/share/vim/vimfiles + cp -vrp misc/vim/README.md misc/vim/ftdetect misc/vim/ftplugin misc/vim/syntax /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/share/vim/vimfiles 'misc/vim/README.md' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/share/vim/vimfiles/README.md' 'misc/vim/ftdetect' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/share/vim/vimfiles/ftdetect' 'misc/vim/ftdetect/snakemake.vim' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/share/vim/vimfiles/ftdetect/snakemake.vim' 'misc/vim/ftplugin' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/share/vim/vimfiles/ftplugin' 'misc/vim/ftplugin/snakemake' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/share/vim/vimfiles/ftplugin/snakemake' 'misc/vim/ftplugin/snakemake/folding.vim' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/share/vim/vimfiles/ftplugin/snakemake/folding.vim' 'misc/vim/ftplugin/snakemake/sections.vim' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/share/vim/vimfiles/ftplugin/snakemake/sections.vim' 'misc/vim/syntax' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/share/vim/vimfiles/syntax' 'misc/vim/syntax/snakemake.vim' -> '/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/share/vim/vimfiles/syntax/snakemake.vim' + find /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/share/vim/vimfiles -type f -name 'README.*' -print -delete /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/share/vim/vimfiles/README.md + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 7.32.4-3.fc40 --unique-debug-suffix -7.32.4-3.fc40.x86_64 --unique-debug-src-base snakemake-7.32.4-3.fc40.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/snakemake-7.32.4 find-debuginfo: starting Extracting debug info from 0 files Creating .debug symlinks for symlinks to ELF files find: ‘debug’: No such file or directory find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/lib/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.ZT7SHh + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd snakemake-7.32.4 + k='not test_lint[long_run-positive]' + k='not test_lint[long_run-positive] and not test_tibanna' + k='not test_lint[long_run-positive] and not test_tibanna and not test_tes' + k='not test_lint[long_run-positive] and not test_tibanna and not test_tes and not test_slurm_' + ignore=' --ignore=tests/test_google_lifesciences.py' + ignore=' --ignore=tests/test_google_lifesciences.py --ignore-glob=tests/test_conda_python_3_7_script/*' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Werror=implicit-function-declaration -Werror=implicit-int -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/lib/python3.12/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/snakemake-7.32.4/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=4 + /usr/bin/pytest -v -k 'not test_lint[long_run-positive] and not test_tibanna and not test_tes and not test_slurm_' --ignore=tests/test_google_lifesciences.py '--ignore-glob=tests/test_conda_python_3_7_script/*' ============================= test session starts ============================== platform linux -- Python 3.12.1, pytest-7.4.3, pluggy-1.3.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /builddir/build/BUILD/snakemake-7.32.4 plugins: requests-mock-1.10.0 collecting ... collected 66 items / 8 deselected / 58 selected tests/test_azure_batch_executor.py::test_az_batch_executor SKIPPED (...) [ 1%] tests/test_expand.py::test_simple_expand PASSED [ 3%] tests/test_expand.py::test_allow_missing PASSED [ 5%] tests/test_io.py::test_wildcard_regex PASSED [ 6%] tests/test_io.py::test_expand PASSED [ 8%] tests/test_kubernetes.py::test_kubernetes_plain SKIPPED (Skipping GC...) [ 10%] tests/test_kubernetes.py::test_kubernetes_conda SKIPPED (Skipping GC...) [ 12%] tests/test_kubernetes.py::test_kubernetes_singularity SKIPPED (Skipp...) [ 13%] tests/test_kubernetes.py::test_kubernetes_conda_singularity SKIPPED [ 15%] tests/test_kubernetes.py::test_issue1041 SKIPPED (Skipping GCLOUD te...) [ 17%] tests/test_linting.py::test_lint[version-positive] PASSED [ 18%] tests/test_linting.py::test_lint[version-negative] PASSED [ 20%] tests/test_linting.py::test_lint[tab_usage-positive] PASSED [ 22%] tests/test_linting.py::test_lint[tab_usage-negative] PASSED [ 24%] tests/test_linting.py::test_lint[singularity-positive] PASSED [ 25%] tests/test_linting.py::test_lint[singularity-negative] PASSED [ 27%] tests/test_linting.py::test_lint[path_add-positive] PASSED [ 29%] tests/test_linting.py::test_lint[path_add-negative] PASSED [ 31%] tests/test_linting.py::test_lint[params_prefix-positive] PASSED [ 32%] tests/test_linting.py::test_lint[params_prefix-negative] PASSED [ 34%] tests/test_linting.py::test_lint[not_used_params-positive] PASSED [ 36%] tests/test_linting.py::test_lint[not_used_params-negative] PASSED [ 37%] tests/test_linting.py::test_lint[mixed_func_and_rules-positive] PASSED [ 39%] tests/test_linting.py::test_lint[mixed_func_and_rules-negative] PASSED [ 41%] tests/test_linting.py::test_lint[missing_software_definition-positive] PASSED [ 43%] tests/test_linting.py::test_lint[missing_software_definition-negative] PASSED [ 44%] tests/test_linting.py::test_lint[long_run-negative] PASSED [ 46%] tests/test_linting.py::test_lint[log_directive-positive] PASSED [ 48%] tests/test_linting.py::test_lint[log_directive-negative] PASSED [ 50%] tests/test_linting.py::test_lint[iofile_by_index-positive] PASSED [ 51%] tests/test_linting.py::test_lint[iofile_by_index-negative] PASSED [ 53%] tests/test_linting.py::test_lint[envvars-positive] PASSED [ 55%] tests/test_linting.py::test_lint[envvars-negative] PASSED [ 56%] tests/test_linting.py::test_lint[dynamic-positive] PASSED [ 58%] tests/test_linting.py::test_lint[dynamic-negative] PASSED [ 60%] tests/test_linting.py::test_lint[absolute_paths-positive] PASSED [ 62%] tests/test_linting.py::test_lint[absolute_paths-negative] PASSED [ 63%] tests/test_persistence.py::TestCleanupContainers::test_one_unrequired_container_gets_removed PASSED [ 65%] tests/test_schema.py::test_config PASSED [ 67%] tests/test_schema.py::test_config_ref PASSED [ 68%] tests/test_schema.py::test_dataframe PASSED [ 70%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_with_shebang_and_second_manifest PASSED [ 72%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_not_at_start_with_shebang PASSED [ 74%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_not_at_start_without_shebang PASSED [ 75%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_with_empty_line_without_shebang PASSED [ 77%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_is_case_insensitive PASSED [ 79%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_spacing_has_no_impact PASSED [ 81%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_formatting_not_touched_even_if_wrong PASSED [ 82%] tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_spelt_wrong PASSED [ 84%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_with_shebang PASSED [ 86%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_without_shebang PASSED [ 87%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_spacing_around_language PASSED [ 89%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_has_non_cargo_block PASSED [ 91%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_missing_closing_fence PASSED [ 93%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_not_in_first_comment_block PASSED [ 94%] tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_with_outer_line_doc_comment PASSED [ 96%] tests/test_script.py::TestBashEncoder::test_named_list_one_named_one_str PASSED [ 98%] tests/test_script.py::TestBashEncoder::test_named_list_named_is_list PASSED [100%] =============================== warnings summary =============================== tests/test_schema.py: 12 warnings /builddir/build/BUILD/snakemake-7.32.4/snakemake/utils.py:50: DeprecationWarning: jsonschema.RefResolver is deprecated as of v4.18.0, in favor of the https://github.com/python-jsonschema/referencing library, which provides more compliant referencing behavior as well as more flexible APIs for customization. A future release will remove RefResolver. Please file a feature request (on referencing) if you are missing an API for the kind of customization you need. from jsonschema import validators, RefResolver tests/test_schema.py::test_config :488: DeprecationWarning: Type google.protobuf.pyext._message.ScalarMapContainer uses PyType_Spec with a metaclass that has custom tp_new. This is deprecated and will no longer be allowed in Python 3.14. tests/test_schema.py::test_config :488: DeprecationWarning: Type google.protobuf.pyext._message.MessageMapContainer uses PyType_Spec with a metaclass that has custom tp_new. This is deprecated and will no longer be allowed in Python 3.14. tests/test_schema.py::test_config /usr/lib64/python3.12/site-packages/google/protobuf/internal/well_known_types.py:92: DeprecationWarning: datetime.datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.fromtimestamp(timestamp, datetime.UTC). _EPOCH_DATETIME = datetime.utcfromtimestamp(0) tests/test_schema.py::test_dataframe /usr/lib64/python3.12/site-packages/pandas/core/algorithms.py:522: DeprecationWarning: np.find_common_type is deprecated. Please use `np.result_type` or `np.promote_types`. See https://numpy.org/devdocs/release/1.25.0-notes.html and the docs for more information. (Deprecated NumPy 1.25) common = np.find_common_type([values.dtype, comps_array.dtype], []) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ========== 52 passed, 6 skipped, 8 deselected, 16 warnings in 11.37s =========== + RPM_EC=0 ++ jobs -p + exit 0 Processing files: snakemake-7.32.4-3.fc40.noarch Provides: python3.12dist(snakemake) = 7.32.4 python3dist(snakemake) = 7.32.4 snakemake = 7.32.4-3.fc40 vim-snakemake = 7.32.4-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: (python3.12dist(jinja2) < 4~~ with python3.12dist(jinja2) >= 3) (python3.12dist(yte) < 2~~ with python3.12dist(yte) >= 1.5.1) /usr/bin/python3 python(abi) = 3.12 python3.12dist(appdirs) python3.12dist(configargparse) python3.12dist(connection-pool) >= 0.0.3 python3.12dist(datrie) python3.12dist(docutils) python3.12dist(gitpython) python3.12dist(humanfriendly) python3.12dist(jsonschema) python3.12dist(nbformat) python3.12dist(packaging) python3.12dist(psutil) python3.12dist(pulp) >= 2 python3.12dist(pyyaml) python3.12dist(requests) python3.12dist(reretry) python3.12dist(smart-open) >= 3 python3.12dist(stopit) python3.12dist(tabulate) python3.12dist(throttler) python3.12dist(toposort) >= 1.10 python3.12dist(wrapt) Processing files: snakemake-doc-7.32.4-3.fc40.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.NrXDQr + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + DOCDIR=/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/share/doc/snakemake-doc + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/share/doc/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/CHANGELOG.md /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/share/doc/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/CODE_OF_CONDUCT.md /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/share/doc/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/README.md /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/share/doc/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/README-nano.md /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/share/doc/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/README-vim.md /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/share/doc/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/docs/_build/latex/Snakemake.pdf /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/share/doc/snakemake-doc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.zdXDGs + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + LICENSEDIR=/builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/share/licenses/snakemake-doc + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/share/licenses/snakemake-doc + cp -pr /builddir/build/BUILD/snakemake-7.32.4/LICENSE.md /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64/usr/share/licenses/snakemake-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: snakemake-doc = 7.32.4-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: snakemake+reports-7.32.4-3.fc40.noarch Provides: python3.12dist(snakemake[reports]) = 7.32.4 python3dist(snakemake[reports]) = 7.32.4 snakemake+reports = 7.32.4-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(pygments) Processing files: snakemake+messaging-7.32.4-3.fc40.noarch Provides: python3.12dist(snakemake[messaging]) = 7.32.4 python3dist(snakemake[messaging]) = 7.32.4 snakemake+messaging = 7.32.4-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(slacker) Processing files: snakemake+google-cloud-7.32.4-3.fc40.noarch Provides: python3.12dist(snakemake[google-cloud]) = 7.32.4 python3dist(snakemake[google-cloud]) = 7.32.4 snakemake+google-cloud = 7.32.4-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(google-api-python-client) python3.12dist(google-cloud-storage) python3.12dist(google-crc32c) python3.12dist(oauth2client) Processing files: snakemake+azure-7.32.4-3.fc40.noarch Provides: python3.12dist(snakemake[azure]) = 7.32.4 python3dist(snakemake[azure]) = 7.32.4 snakemake+azure = 7.32.4-3.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: python(abi) = 3.12 python3.12dist(azure-batch) python3.12dist(azure-core) python3.12dist(azure-identity) python3.12dist(azure-mgmt-batch) python3.12dist(azure-storage-blob) Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64 Wrote: /builddir/build/SRPMS/snakemake-7.32.4-3.fc40.src.rpm Wrote: /builddir/build/RPMS/snakemake+google-cloud-7.32.4-3.fc40.noarch.rpm Wrote: /builddir/build/RPMS/snakemake+messaging-7.32.4-3.fc40.noarch.rpm Wrote: /builddir/build/RPMS/snakemake+reports-7.32.4-3.fc40.noarch.rpm Wrote: /builddir/build/RPMS/snakemake+azure-7.32.4-3.fc40.noarch.rpm Wrote: /builddir/build/RPMS/snakemake-doc-7.32.4-3.fc40.noarch.rpm Wrote: /builddir/build/RPMS/snakemake-7.32.4-3.fc40.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.CX1Lze + umask 022 + cd /builddir/build/BUILD + cd snakemake-7.32.4 + /usr/bin/rm -rf /builddir/build/BUILDROOT/snakemake-7.32.4-3.fc40.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.4AFaqM + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/snakemake-7.32.4-SPECPARTS + rm -rf snakemake-7.32.4 snakemake-7.32.4.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild snakemake-7.32.4-3.fc40.src.rpm Finish: build phase for snakemake-7.32.4-3.fc40.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1704460447.820331/root/var/log/dnf5.log INFO: Done(/var/lib/copr-rpmbuild/results/snakemake-7.32.4-3.fc40.src.rpm) Config(child) 1 minutes 8 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "snakemake+google-cloud", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "noarch" }, { "name": "snakemake-doc", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "noarch" }, { "name": "snakemake+reports", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "noarch" }, { "name": "snakemake+messaging", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "noarch" }, { "name": "snakemake", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "noarch" }, { "name": "snakemake", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "src" }, { "name": "snakemake+azure", "epoch": null, "version": "7.32.4", "release": "3.fc40", "arch": "noarch" } ] } RPMResults finished