## START: Set by rpmautospec
## (rpmautospec version 0.6.0)
## RPMAUTOSPEC: autorelease, autochangelog
%define autorelease(e:s:pb:n) %{?-p:0.}%{lua:
release_number = 2;
base_release_number = tonumber(rpm.expand("%{?-b*}%{!?-b:1}"));
print(release_number + base_release_number - 1);
}%{?-e:.%{-e*}}%{?-s:.%{-s*}}%{!?-n:%{?dist}}
## END: Set by rpmautospec
%bcond tests 1
Name: python-pingouin
Version: 0.5.4
Release: %autorelease
Summary: Statistical package in Python based on Pandas
License: GPL-3.0-only
URL: https://pingouin-stats.org/
# PyPI tar does not contain docs and tests
Source: https://github.com/raphaelvallat/pingouin/archive/v%{version}/pingouin-%{version}.tar.gz
# Fix penalty for LogisticRegression (#403)
# https://github.com/raphaelvallat/pingouin/pull/403
# https://github.com/raphaelvallat/pingouin/commit/0fb0277be107dac4fbcb607c6259e3d509e90da0
Patch: https://github.com/raphaelvallat/pingouin/commit/0fb0277be107dac4fbcb607c6259e3d509e90da0.patch
# https://fedoraproject.org/wiki/Changes/EncourageI686LeafRemoval
ExcludeArch: %{ix86}
BuildRequires: python3-devel
# The odd combination of an arched package with only noarch binary packages
# makes it easier for us to detect with arch-dependent test failures, since the
# tests will always be run on every platform, and easier for us to skip failing
# tests if necessary, since we can be sure that %%ifarch macros work as
# expected.
#
# Since the package still contains no compiled machine code, we still have no
# debuginfo.
%global debug_package %{nil}
%global _description %{expand:
Pingouin is an open-source statistical package written in Python 3 and based
mostly on Pandas and NumPy. Some of its main features are listed below. For a
full list of available functions, please refer to the API documentation.
1. ANOVAs: N-ways, repeated measures, mixed, ancova
2. Pairwise post-hocs tests (parametric and non-parametric) and pairwise
correlations
3. Robust, partial, distance and repeated measures correlations
4. Linear/logistic regression and mediation analysis
5. Bayes Factors
6. Multivariate tests
7. Reliability and consistency
8. Effect sizes and power analysis
9. Parametric/bootstrapped confidence intervals around an effect size or a
correlation coefficient
10. Circular statistics
11. Chi-squared tests
12. Plotting: Bland-Altman plot, Q-Q plot, paired plot, robust correlation…
Pingouin is designed for users who want simple yet exhaustive statistical
functions.
For example, the ttest_ind function of SciPy returns only the T-value and the
p-value. By contrast, the ttest function of Pingouin returns the T-value, the
p-value, the degrees of freedom, the effect size (Cohen’s d), the 95%
confidence intervals of the difference in means, the statistical power and the
Bayes Factor (BF10) of the test.}
%description %_description
%package -n python3-pingouin
Summary: %{summary}
BuildArch: noarch
%description -n python3-pingouin %_description
%package doc
Summary: Documentation and examples for %{name}
BuildArch: noarch
%description doc
%{summary}.
%prep
%autosetup -n pingouin-%{version} -p1
# Version was upper-bounded in 2223ca5a89c28511dc54101ed0b9501425fcca47; this
# is possibly a “Temp fix for bug in plot_paired.†Anyway, we cannot respect
# the version bound.
sed -r -i 's/(numpy)<.*/\1/' requirements-test.txt
%generate_buildrequires
%pyproject_buildrequires %{?with_tests:requirements-test.txt}
%build
%pyproject_wheel
%install
%pyproject_install
%pyproject_save_files -l pingouin
%check
%if %{with tests}
# TestMultivariate.test_box_m fails without this. See:
# https://docs.fedoraproject.org/en-US/packaging-guidelines/BLAS_LAPACK/#_tests
#
# Two new test failures fails in Fedora Rawhide
# https://github.com/raphaelvallat/pingouin/issues/402
export FLEXIBLAS=netlib
# Two new test failures fails in Fedora Rawhide
# https://github.com/raphaelvallat/pingouin/issues/402
k="${k-}${k+ and }not (TestRegression and test_linear_regression)"
%pytest -k "${k-}" -v
%endif
%files -n python3-pingouin -f %{pyproject_files}
%doc CODE_OF_CONDUCT.md
%doc README.rst
%files doc
%license LICENSE
%doc notebooks
%changelog
## START: Generated by rpmautospec
* Fri Apr 26 2024 Benjamin A. Beasley <code@musicinmybrain.net> - 0.5.4-2
- Fix penalty for LogisticRegression (fix RHBZ#2276932)
* Wed Jan 31 2024 Benjamin A. Beasley <code@musicinmybrain.net> - 0.5.4-1
- Update to 0.5.4 (close RHBZ#2258253)
* Wed Jan 31 2024 Benjamin A. Beasley <code@musicinmybrain.net> - 0.5.3-12
- Work around or skip two new failing tests (close RHBZ#2261590)
* Fri Jan 26 2024 Fedora Release Engineering <releng@fedoraproject.org> - 0.5.3-10
- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
* Mon Jan 22 2024 Fedora Release Engineering <releng@fedoraproject.org> - 0.5.3-9
- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
* Thu Jan 04 2024 Benjamin A. Beasley <code@musicinmybrain.net> - 0.5.3-8
- Assert that a license file is present in the .dist-info directory
* Sat Jul 29 2023 Sandro <devel@penguinpee.nl> - 0.5.3-5
- Fix failing tests in Python3.12 (RHBZ#2220406)
- Apply patch from upstream (RHBZ#2226012)
- Run tests verbosely
* Thu Jul 20 2023 Python Maint <python-maint@redhat.com> - 0.5.3-4
- Rebuilt for Python 3.12
* Sat Feb 25 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 0.5.3-3
- Fix crash in test_power_chi2
* Fri Jan 20 2023 Fedora Release Engineering <releng@fedoraproject.org> - 0.5.3-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
* Fri Dec 30 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 0.5.3-1
- Update to 0.5.3 (close RHBZ#2156968)
* Fri Dec 30 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 0.5.2-11
- Remove unused patch files
* Fri Dec 30 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 0.5.2-10
- Update description from upstream
* Fri Dec 30 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 0.5.2-9
- Spec file whitespace formatting
* Fri Dec 30 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 0.5.2-8
- Convert License to SPDX
* Fri Dec 30 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 0.5.2-7
- Fix License; no MIT without HTML docs
* Mon Dec 19 2022 Elliott Sales de Andrade <quantum.analyst@gmail.com> - 0.5.2-6
- Drop support for i686
* Tue Aug 30 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 0.5.2-5
- Remove test skip for retired 32-bit arm arch.
* Tue Aug 30 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 0.5.2-4
- Remove workaround for pandas<1.3.4
* Tue Aug 30 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 0.5.2-3
- Fix compatibility with scikit-learn 1.1.2 (fix RHBZ#2122144)
* Mon Aug 15 2022 Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur@gmail.com> - 0.5.2-2
- chore: rebuild for pyc magic number change (fixes rhbz#2113644)
* Mon Aug 01 2022 Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur@gmail.com> - 0.5.2-1
- feat: update to 0.5.2 (rhbz #2100936)
* Fri Jul 22 2022 Fedora Release Engineering <releng@fedoraproject.org> - 0.5.1-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
* Mon Jul 04 2022 Python Maint <python-maint@redhat.com> - 0.5.1-2
- Rebuilt for Python 3.11
* Mon Feb 21 2022 Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur@gmail.com> - 0.5.1-1
- feat: update to 0.5.1 (fixes rhbz#2056272)
* Fri Jan 21 2022 Fedora Release Engineering <releng@fedoraproject.org> - 0.5.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
* Fri Oct 29 2021 Benjamin A. Beasley <code@musicinmybrain.net> - 0.5.0-1
- Update to 0.5.0 (close RHBZ#2018342)
* Thu Sep 23 2021 Benjamin A. Beasley <code@musicinmybrain.net> - 0.4.0-1
- Update to 0.4.0
- Switch to pyproject-rpm-macros to avoid manual BR’s
- Use an arched source package with only noarch binary packages to ensure tests
are run on all arches; while this package really is noarch, it has a history
of arch-dependent test failures
* Fri Jul 23 2021 Benjamin A. Beasley <code@musicinmybrain.net> - 0.3.12-3
- Fix RHBZ#1981679
* Fri Jul 23 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.3.12-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
* Thu Jun 17 2021 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.3.12-1
- Update to new release
* Fri Jun 04 2021 Python Maint <python-maint@redhat.com> - 0.3.11-2
- Rebuilt for Python 3.10
* Sat May 22 2021 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.3.11-1
- Update to latest release
* Sun Mar 28 2021 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.3.10-1
- Update to new release
* Wed Jan 27 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.3.8-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
* Sun Sep 13 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.3.8-1
- Update to new release
- Fix BR on scipy
* Fri Sep 04 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.3.7-1
- Update to new release
* Wed Jul 29 2020 Fedora Release Engineering <releng@fedoraproject.org> - 0.3.6-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
* Sat Jul 04 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.3.6-1
- Update to new release
* Thu Jun 25 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.3.5-2
- Explicitly BR setuptools
* Sun Jun 21 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.3.5-1
- Update to 0.3.5
* Tue May 26 2020 Miro HronÄok <mhroncok@redhat.com> - 0.3.3-2
- Rebuilt for Python 3.9
* Sat May 02 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.3.3-1
- Update to latest release
* Fri Dec 06 2019 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.3.1-1
- Update to 0.3.1
* Sat Nov 09 2019 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.2.9-1
- Update to 0.2.9
- rebuild since scipy 1.3.0 is now available in rawhide
- Requires pandas-flavor, needs packaging
* Sat Jul 20 2019 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.2.7-1
- Correct license
- Add missing BR
- Add notebooks to documentation
* Fri Jul 19 2019 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.2.7-1
- Initial build
## END: Generated by rpmautospec