Warning: Permanently added '162.133.130.125' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6202561-fedora-rawhide-s390x --chroot fedora-rawhide-s390x Version: 0.68 PID: 5590 Logging PID: 5591 Task: {'appstream': False, 'background': True, 'build_id': 6202561, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-s390x', 'enable_net': False, 'fedora_review': False, 'git_hash': '6c0051f60a4b05c97892bdac906d5f577102b538', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/scipy-1.8.3/smoldyn', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'smoldyn', 'package_version': '2.67.3-6', 'project_dirname': 'scipy-1.8.3', 'project_name': 'scipy-1.8.3', 'project_owner': 'psimovec', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/psimovec/scipy-1.8.3/fedora-rawhide-s390x/', 'id': 'copr_base', 'name': 'Copr repository'}, {'baseurl': 'http://kojipkgs.fedoraproject.org/repos/rawhide/latest/$basearch/', 'id': 'http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch', 'name': 'Additional repo http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch'}], 'sandbox': 'psimovec/scipy-1.8.3--https://src.fedoraproject.org/user/releng', 'source_json': {}, 'source_type': None, 'submitter': 'https://src.fedoraproject.org/user/releng', 'tags': [], 'task_id': '6202561-fedora-rawhide-s390x', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/psimovec/scipy-1.8.3/smoldyn /var/lib/copr-rpmbuild/workspace/workdir-hqsezvbr/smoldyn --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/psimovec/scipy-1.8.3/smoldyn', '/var/lib/copr-rpmbuild/workspace/workdir-hqsezvbr/smoldyn', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-hqsezvbr/smoldyn'... Running: git checkout 6c0051f60a4b05c97892bdac906d5f577102b538 -- cmd: ['git', 'checkout', '6c0051f60a4b05c97892bdac906d5f577102b538', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-hqsezvbr/smoldyn rc: 0 stdout: stderr: Note: switching to '6c0051f60a4b05c97892bdac906d5f577102b538'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 6c0051f automatic import of smoldyn Running: copr-distgit-client sources /usr/bin/tail: cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-hqsezvbr/smoldyn rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading Smoldyn-2.67.3.tar.gz INFO: Calling: curl -H Pragma: -o Smoldyn-2.67.3.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/psimovec/scipy-1.8.3/smoldyn/Smoldyn-2.67.3.tar.gz/md5/061227e5683e484b0dd465d378e5390b/Smoldyn-2.67.3.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed /var/lib/copr-rpmbuild/main.log: file truncated 100 92.0M 100 92.0M 0 0 13.3M 0 0:00:06 0:00:06 --:--:-- 17.3M INFO: Reading stdout from command: md5sum Smoldyn-2.67.3.tar.gz Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-hqsezvbr/smoldyn/smoldyn.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-hqsezvbr/smoldyn --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1689992826.447392 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 4.1 starting (python version = 3.11.3, NVR = mock-4.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-hqsezvbr/smoldyn/smoldyn.spec) Config(fedora-rawhide-s390x) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1689992826.447392/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (fallback) Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 2.5 MB/s | 1.9 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 10 MB/s | 64 MB 00:06 fedora 12 MB/s | 63 MB 00:05 Dependencies resolved. ======================================================================================================================================== Package Arch Version Repository Size ======================================================================================================================================== Installing: dnf-plugins-core noarch 4.4.1-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38 k python3-dnf noarch 4.16.1-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 546 k Installing dependencies: alternatives s390x 1.24-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40 k audit-libs s390x 3.1.1-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 121 k basesystem noarch 11-17.fc39 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http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 727 k systemd-libs s390x 254~rc2-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 693 k tpm2-tss s390x 4.0.1-3.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 684 k tzdata noarch 2023c-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 433 k xz-libs s390x 5.4.3-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 114 k zchunk-libs s390x 1.3.1-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 51 k zlib s390x 1.2.13-3.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 101 k Transaction Summary ======================================================================================================================================== Install 140 Packages Total download size: 56 M Installed size: 202 M Downloading Packages: (1/140): basesystem-11-17.fc39.noarch.rpm 7.9 kB/s | 7.0 kB 00:00 (2/140): alternatives-1.24-1.fc39.s390x.rpm 32 kB/s | 40 kB 00:01 (3/140): audit-libs-3.1.1-3.fc39.s390x.rpm 89 kB/s | 121 kB 00:01 (4/140): bzip2-libs-1.0.8-16.fc39.s390x.rpm 135 kB/s | 46 kB 00:00 (5/140): ca-certificates-2023.2.60-2.fc38.noarc 1.2 MB/s | 845 kB 00:00 (6/140): bash-5.2.15-3.fc38.s390x.rpm 1.3 MB/s | 1.8 MB 00:01 (7/140): coreutils-9.3-1.fc39.s390x.rpm 1.3 MB/s | 1.1 MB 00:00 (8/140): coreutils-common-9.3-1.fc39.s390x.rpm 4.1 MB/s | 2.1 MB 00:00 (9/140): crypto-policies-20230614-1.git5f3458e. 189 kB/s | 65 kB 00:00 (10/140): curl-8.2.0-1.fc39.s390x.rpm 1.0 MB/s | 346 kB 00:00 (11/140): cyrus-sasl-lib-2.1.28-10.fc39.s390x.r 2.3 MB/s | 819 kB 00:00 (12/140): dbus-libs-1.14.8-1.fc39.s390x.rpm 460 kB/s | 159 kB 00:00 (13/140): dnf-data-4.16.1-3.fc39.noarch.rpm 110 kB/s | 38 kB 00:00 (14/140): dnf-plugins-core-4.4.1-4.fc39.noarch. 110 kB/s | 38 kB 00:00 (15/140): elfutils-default-yama-scope-0.189-3.f 39 kB/s | 13 kB 00:00 (16/140): elfutils-libelf-0.189-3.fc39.s390x.rp 577 kB/s | 200 kB 00:00 (17/140): elfutils-libs-0.189-3.fc39.s390x.rpm 795 kB/s | 275 kB 00:00 (18/140): expat-2.5.0-2.fc38.s390x.rpm 329 kB/s | 114 kB 00:00 (19/140): fedora-gpg-keys-39-0.3.noarch.rpm 338 kB/s | 117 kB 00:00 (20/140): fedora-release-39-0.21.noarch.rpm 20 kB/s | 6.9 kB 00:00 (21/140): fedora-release-common-39-0.21.noarch. 49 kB/s | 17 kB 00:00 (22/140): fedora-release-identity-basic-39-0.21 22 kB/s | 7.6 kB 00:00 (23/140): fedora-repos-39-0.3.noarch.rpm 26 kB/s | 8.8 kB 00:00 (24/140): fedora-repos-rawhide-39-0.3.noarch.rp 24 kB/s | 8.4 kB 00:00 (25/140): file-libs-5.44-4.fc39.s390x.rpm 2.1 MB/s | 736 kB 00:00 (26/140): filesystem-3.18-4.fc39.s390x.rpm 3.1 MB/s | 1.1 MB 00:00 (27/140): findutils-4.9.0-4.fc39.s390x.rpm 1.4 MB/s | 487 kB 00:00 (28/140): fmt-10.0.0-2.fc39.s390x.rpm 383 kB/s | 132 kB 00:00 (29/140): gawk-5.2.2-1.fc39.s390x.rpm 3.1 MB/s | 1.1 MB 00:00 (30/140): gdbm-libs-1.23-3.fc38.s390x.rpm 168 kB/s | 58 kB 00:00 (31/140): glibc-2.37.9000-17.fc39.s390x.rpm 5.2 MB/s | 1.8 MB 00:00 (32/140): glib2-2.77.0-7.fc39.s390x.rpm 4.0 MB/s | 2.8 MB 00:00 (33/140): glibc-minimal-langpack-2.37.9000-17.f 187 kB/s | 64 kB 00:00 (34/140): glibc-common-2.37.9000-17.fc39.s390x. 423 kB/s | 358 kB 00:00 (35/140): gmp-6.2.1-4.fc38.s390x.rpm 937 kB/s | 325 kB 00:00 (36/140): gnupg2-2.4.3-1.fc39.s390x.rpm 7.5 MB/s | 2.7 MB 00:00 (37/140): gpgme-1.20.0-4.fc39.s390x.rpm 643 kB/s | 222 kB 00:00 (38/140): gnutls-3.8.0-6.fc39.s390x.rpm 2.0 MB/s | 1.0 MB 00:00 (39/140): grep-3.11-1.fc39.s390x.rpm 577 kB/s | 294 kB 00:00 (40/140): ima-evm-utils-1.5-1.fc39.s390x.rpm 182 kB/s | 63 kB 00:00 (41/140): json-c-0.16-4.fc38.s390x.rpm 124 kB/s | 43 kB 00:00 (42/140): keyutils-libs-1.6.1-6.fc38.s390x.rpm 90 kB/s | 31 kB 00:00 (43/140): krb5-libs-1.21-2.fc39.s390x.rpm 2.2 MB/s | 776 kB 00:00 (44/140): libacl-2.3.1-7.fc39.s390x.rpm 70 kB/s | 24 kB 00:00 (45/140): libarchive-3.6.1-5.fc39.s390x.rpm 1.2 MB/s | 426 kB 00:00 (46/140): libassuan-2.5.6-1.fc39.s390x.rpm 194 kB/s | 67 kB 00:00 (47/140): libattr-2.5.1-7.fc39.s390x.rpm 53 kB/s | 18 kB 00:00 (48/140): libb2-0.98.1-8.fc38.s390x.rpm 78 kB/s | 27 kB 00:00 (49/140): libblkid-2.39.1-2.fc39.s390x.rpm 350 kB/s | 121 kB 00:00 (50/140): libbrotli-1.0.9-12.fc39.s390x.rpm 990 kB/s | 343 kB 00:00 (51/140): libcap-2.48-6.fc38.s390x.rpm 197 kB/s | 68 kB 00:00 (52/140): libcap-ng-0.8.3-6.fc39.s390x.rpm 94 kB/s | 32 kB 00:00 (53/140): libcom_err-1.47.0-1.fc39.s390x.rpm 75 kB/s | 26 kB 00:00 (54/140): libcomps-0.1.19-2.fc39.s390x.rpm 227 kB/s | 79 kB 00:00 (55/140): libcurl-8.2.0-1.fc39.s390x.rpm 991 kB/s | 343 kB 00:00 (56/140): libdnf-0.70.1-4.fc39.s390x.rpm 1.8 MB/s | 646 kB 00:00 (57/140): libdnf5-5.1.0-1.fc39.s390x.rpm 2.5 MB/s | 876 kB 00:00 (58/140): libeconf-0.4.0-5.fc38.s390x.rpm 83 kB/s | 28 kB 00:00 (59/140): libevent-2.1.12-8.fc38.s390x.rpm 751 kB/s | 260 kB 00:00 (60/140): libffi-3.4.4-3.fc39.s390x.rpm 103 kB/s | 36 kB 00:00 (61/140): libfsverity-1.4-9.fc38.s390x.rpm 55 kB/s | 19 kB 00:00 (62/140): libgcc-13.1.1-4.fc39.s390x.rpm 232 kB/s | 80 kB 00:00 (63/140): libgcrypt-1.10.2-1.fc39.s390x.rpm 1.4 MB/s | 496 kB 00:00 (64/140): libgomp-13.1.1-4.fc39.s390x.rpm 924 kB/s | 321 kB 00:00 (65/140): libgpg-error-1.47-1.fc39.s390x.rpm 653 kB/s | 226 kB 00:00 (66/140): libidn2-2.3.4-2.fc38.s390x.rpm 450 kB/s | 155 kB 00:00 (67/140): libksba-1.6.4-1.fc39.s390x.rpm 469 kB/s | 162 kB 00:00 (68/140): libmodulemd-2.15.0-4.fc39.s390x.rpm 628 kB/s | 217 kB 00:00 (69/140): libmount-2.39.1-2.fc39.s390x.rpm 457 kB/s | 158 kB 00:00 (70/140): libnghttp2-1.55.1-1.fc39.s390x.rpm 226 kB/s | 78 kB 00:00 (71/140): libnsl2-2.0.0-5.fc38.s390x.rpm 86 kB/s | 30 kB 00:00 (72/140): libpsl-0.21.2-3.fc39.s390x.rpm 183 kB/s | 63 kB 00:00 (73/140): librepo-1.15.1-3.fc39.s390x.rpm 276 kB/s | 95 kB 00:00 (74/140): libreport-filesystem-2.17.11-2.fc39.n 41 kB/s | 14 kB 00:00 (75/140): libselinux-3.5-4.fc39.s390x.rpm 264 kB/s | 91 kB 00:00 (76/140): libsemanage-3.5-3.fc39.s390x.rpm 353 kB/s | 122 kB 00:00 (77/140): libsepol-3.5-1.fc39.s390x.rpm 955 kB/s | 330 kB 00:00 (78/140): libsigsegv-2.14-4.fc38.s390x.rpm 77 kB/s | 27 kB 00:00 (79/140): libsmartcols-2.39.1-2.fc39.s390x.rpm 202 kB/s | 70 kB 00:00 (80/140): libsolv-0.7.24-8.fc39.s390x.rpm 1.3 MB/s | 458 kB 00:00 (81/140): libssh-0.10.5-1.fc39.s390x.rpm 605 kB/s | 209 kB 00:00 (82/140): libssh-config-0.10.5-1.fc39.noarch.rp 26 kB/s | 9.0 kB 00:00 (83/140): libstdc++-13.1.1-4.fc39.s390x.rpm 2.7 MB/s | 950 kB 00:00 (84/140): libtasn1-4.19.0-2.fc38.s390x.rpm 224 kB/s | 77 kB 00:00 (85/140): libtirpc-1.3.3-1.rc1.fc39.s390x.rpm 277 kB/s | 96 kB 00:00 (86/140): libunistring-1.1-3.fc38.s390x.rpm 1.6 MB/s | 557 kB 00:00 (87/140): libunistring1.0-1.0-1.fc38.s390x.rpm 1.6 MB/s | 552 kB 00:00 (88/140): libuuid-2.39.1-2.fc39.s390x.rpm 83 kB/s | 29 kB 00:00 (89/140): libverto-0.3.2-5.fc38.s390x.rpm 61 kB/s | 21 kB 00:00 (90/140): libxcrypt-4.4.36-1.fc39.s390x.rpm 359 kB/s | 124 kB 00:00 (91/140): libxml2-2.10.4-2.fc39.s390x.rpm 2.0 MB/s | 712 kB 00:00 (92/140): libyaml-0.2.5-9.fc38.s390x.rpm 180 kB/s | 62 kB 00:00 (93/140): libzstd-1.5.5-1.fc39.s390x.rpm 986 kB/s | 342 kB 00:00 (94/140): lua-libs-5.4.4-9.fc39.s390x.rpm 409 kB/s | 141 kB 00:00 (95/140): lz4-libs-1.9.4-3.fc39.s390x.rpm 234 kB/s | 81 kB 00:00 (96/140): mpdecimal-2.5.1-6.fc38.s390x.rpm 290 kB/s | 100 kB 00:00 (97/140): mpfr-4.2.0-2.fc39.s390x.rpm 860 kB/s | 298 kB 00:00 (98/140): ncurses-base-6.4-5.20230520.fc39.noar 182 kB/s | 63 kB 00:00 (99/140): ncurses-libs-6.4-5.20230520.fc39.s390 1.0 MB/s | 360 kB 00:00 (100/140): nettle-3.9.1-1.fc39.s390x.rpm 1.3 MB/s | 456 kB 00:00 (101/140): npth-1.6-13.fc39.s390x.rpm 70 kB/s | 24 kB 00:00 (102/140): openldap-2.6.4-3.fc39.s390x.rpm 750 kB/s | 261 kB 00:00 (103/140): openssl-libs-3.0.8-2.fc39.s390x.rpm 5.2 MB/s | 1.9 MB 00:00 (104/140): p11-kit-0.24.1-6.fc38.s390x.rpm 1.0 MB/s | 359 kB 00:00 (105/140): p11-kit-trust-0.24.1-6.fc38.s390x.rp 393 kB/s | 136 kB 00:00 (106/140): pcre2-10.42-1.fc38.1.s390x.rpm 725 kB/s | 251 kB 00:00 (107/140): pcre2-syntax-10.42-1.fc38.1.noarch.r 416 kB/s | 144 kB 00:00 (108/140): popt-1.19-2.fc38.s390x.rpm 181 kB/s | 62 kB 00:00 (109/140): publicsuffix-list-dafsa-20230614-1.f 165 kB/s | 57 kB 00:00 (110/140): python-pip-wheel-23.1.2-2.fc39.noarc 4.1 MB/s | 1.4 MB 00:00 (111/140): python3-3.12.0~b4-1.fc39.s390x.rpm 74 kB/s | 26 kB 00:00 (112/140): python3-dateutil-2.8.2-9.fc39.noarch 992 kB/s | 344 kB 00:00 (113/140): python3-dbus-1.3.2-3.fc39.s390x.rpm 423 kB/s | 146 kB 00:00 (114/140): python3-distro-1.8.0-5.fc39.noarch.r 128 kB/s | 44 kB 00:00 (115/140): python3-dnf-4.16.1-3.fc39.noarch.rpm 1.5 MB/s | 546 kB 00:00 (116/140): python3-dnf-plugins-core-4.4.1-4.fc3 803 kB/s | 278 kB 00:00 (117/140): python3-gpg-1.20.0-4.fc39.s390x.rpm 819 kB/s | 283 kB 00:00 (118/140): python3-hawkey-0.70.1-4.fc39.s390x.r 291 kB/s | 101 kB 00:00 (119/140): python3-libcomps-0.1.19-2.fc39.s390x 143 kB/s | 49 kB 00:00 (120/140): python3-libdnf-0.70.1-4.fc39.s390x.r 2.2 MB/s | 794 kB 00:00 (121/140): python3-rpm-4.18.91-7.fc39.s390x.rpm 196 kB/s | 67 kB 00:00 (122/140): python3-libs-3.12.0~b4-1.fc39.s390x. 12 MB/s | 8.8 MB 00:00 (123/140): python3-systemd-235-4.fc39.s390x.rpm 289 kB/s | 100 kB 00:00 (124/140): python3-six-1.16.0-11.fc39.noarch.rp 60 kB/s | 41 kB 00:00 (125/140): readline-8.2-3.fc38.s390x.rpm 662 kB/s | 229 kB 00:00 (126/140): rpm-4.18.91-7.fc39.s390x.rpm 1.4 MB/s | 501 kB 00:00 (127/140): rpm-build-libs-4.18.91-7.fc39.s390x. 281 kB/s | 97 kB 00:00 (128/140): rpm-libs-4.18.91-7.fc39.s390x.rpm 933 kB/s | 322 kB 00:00 (129/140): rpm-sequoia-1.4.1-1.fc39.s390x.rpm 2.7 MB/s | 950 kB 00:00 (130/140): rpm-sign-libs-4.18.91-7.fc39.s390x.r 76 kB/s | 26 kB 00:00 (131/140): sed-4.8-12.fc38.s390x.rpm 869 kB/s | 300 kB 00:00 (132/140): setup-2.14.3-3.fc39.noarch.rpm 421 kB/s | 146 kB 00:00 (133/140): shadow-utils-4.13-7.fc39.s390x.rpm 3.5 MB/s | 1.2 MB 00:00 (134/140): sqlite-libs-3.42.0-6.fc39.s390x.rpm 2.0 MB/s | 727 kB 00:00 (135/140): systemd-libs-254~rc2-4.fc39.s390x.rp 2.0 MB/s | 693 kB 00:00 (136/140): tpm2-tss-4.0.1-3.fc38.s390x.rpm 1.9 MB/s | 684 kB 00:00 (137/140): tzdata-2023c-1.fc39.noarch.rpm 1.2 MB/s | 433 kB 00:00 (138/140): xz-libs-5.4.3-1.fc39.s390x.rpm 330 kB/s | 114 kB 00:00 (139/140): zchunk-libs-1.3.1-1.fc39.s390x.rpm 148 kB/s | 51 kB 00:00 (140/140): zlib-1.2.13-3.fc38.s390x.rpm 292 kB/s | 101 kB 00:00 -------------------------------------------------------------------------------- Total 3.1 MB/s | 56 MB 00:18 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-4.fc39.s390x 1/1 Preparing : 1/1 Installing : libgcc-13.1.1-4.fc39.s390x 1/140 Running scriptlet: libgcc-13.1.1-4.fc39.s390x 1/140 Installing : tzdata-2023c-1.fc39.noarch 2/140 Installing : crypto-policies-20230614-1.git5f3458e.fc39.noarc 3/140 Running scriptlet: crypto-policies-20230614-1.git5f3458e.fc39.noarc 3/140 Installing : fedora-release-identity-basic-39-0.21.noarch 4/140 Installing : publicsuffix-list-dafsa-20230614-1.fc39.noarch 5/140 Installing : pcre2-syntax-10.42-1.fc38.1.noarch 6/140 Installing : ncurses-base-6.4-5.20230520.fc39.noarch 7/140 Installing : libssh-config-0.10.5-1.fc39.noarch 8/140 Installing : libreport-filesystem-2.17.11-2.fc39.noarch 9/140 Installing : fedora-gpg-keys-39-0.3.noarch 10/140 Installing : fedora-release-39-0.21.noarch 11/140 Installing : fedora-release-common-39-0.21.noarch 12/140 Installing : fedora-repos-rawhide-39-0.3.noarch 13/140 Installing : fedora-repos-39-0.3.noarch 14/140 Installing : setup-2.14.3-3.fc39.noarch 15/140 Running scriptlet: setup-2.14.3-3.fc39.noarch 15/140 Installing : filesystem-3.18-4.fc39.s390x 16/140 Installing : basesystem-11-17.fc39.noarch 17/140 Installing : glibc-minimal-langpack-2.37.9000-17.fc39.s390x 18/140 Installing : glibc-common-2.37.9000-17.fc39.s390x 19/140 Running scriptlet: glibc-2.37.9000-17.fc39.s390x 20/140 Installing : glibc-2.37.9000-17.fc39.s390x 20/140 Running scriptlet: glibc-2.37.9000-17.fc39.s390x 20/140 Installing : ncurses-libs-6.4-5.20230520.fc39.s390x 21/140 Installing : bash-5.2.15-3.fc38.s390x 22/140 Running scriptlet: bash-5.2.15-3.fc38.s390x 22/140 Installing : zlib-1.2.13-3.fc38.s390x 23/140 Installing : bzip2-libs-1.0.8-16.fc39.s390x 24/140 Installing : libzstd-1.5.5-1.fc39.s390x 25/140 Installing : xz-libs-5.4.3-1.fc39.s390x 26/140 Installing : libxml2-2.10.4-2.fc39.s390x 27/140 Installing : sqlite-libs-3.42.0-6.fc39.s390x 28/140 Installing : gmp-1:6.2.1-4.fc38.s390x 29/140 Installing : libgpg-error-1.47-1.fc39.s390x 30/140 Installing : libstdc++-13.1.1-4.fc39.s390x 31/140 Installing : libcap-2.48-6.fc38.s390x 32/140 Installing : libuuid-2.39.1-2.fc39.s390x 33/140 Installing : readline-8.2-3.fc38.s390x 34/140 Installing : libattr-2.5.1-7.fc39.s390x 35/140 Installing : libacl-2.3.1-7.fc39.s390x 36/140 Installing : libffi-3.4.4-3.fc39.s390x 37/140 Installing : p11-kit-0.24.1-6.fc38.s390x 38/140 Installing : libxcrypt-4.4.36-1.fc39.s390x 39/140 Installing : pcre2-10.42-1.fc38.1.s390x 40/140 Installing : popt-1.19-2.fc38.s390x 41/140 Installing : libassuan-2.5.6-1.fc39.s390x 42/140 Installing : elfutils-libelf-0.189-3.fc39.s390x 43/140 Installing : expat-2.5.0-2.fc38.s390x 44/140 Installing : gdbm-libs-1:1.23-3.fc38.s390x 45/140 Installing : json-c-0.16-4.fc38.s390x 46/140 Installing : keyutils-libs-1.6.1-6.fc38.s390x 47/140 Installing : libcom_err-1.47.0-1.fc39.s390x 48/140 Installing : libgomp-13.1.1-4.fc39.s390x 49/140 Installing : libsepol-3.5-1.fc39.s390x 50/140 Installing : libselinux-3.5-4.fc39.s390x 51/140 Installing : sed-4.8-12.fc38.s390x 52/140 Installing : libsmartcols-2.39.1-2.fc39.s390x 53/140 Installing : libtasn1-4.19.0-2.fc38.s390x 54/140 Installing : libunistring-1.1-3.fc38.s390x 55/140 Installing : lua-libs-5.4.4-9.fc39.s390x 56/140 Installing : lz4-libs-1.9.4-3.fc39.s390x 57/140 Installing : systemd-libs-254~rc2-4.fc39.s390x 58/140 Installing : dbus-libs-1:1.14.8-1.fc39.s390x 59/140 Installing : findutils-1:4.9.0-4.fc39.s390x 60/140 Installing : libb2-0.98.1-8.fc38.s390x 61/140 Installing : cyrus-sasl-lib-2.1.28-10.fc39.s390x 62/140 Installing : libcomps-0.1.19-2.fc39.s390x 63/140 Installing : grep-3.11-1.fc39.s390x 64/140 Installing : libblkid-2.39.1-2.fc39.s390x 65/140 Installing : libmount-2.39.1-2.fc39.s390x 66/140 Installing : fmt-10.0.0-2.fc39.s390x 67/140 Installing : libgcrypt-1.10.2-1.fc39.s390x 68/140 Installing : libksba-1.6.4-1.fc39.s390x 69/140 Installing : mpfr-4.2.0-2.fc39.s390x 70/140 Installing : nettle-3.9.1-1.fc39.s390x 71/140 Installing : file-libs-5.44-4.fc39.s390x 72/140 Installing : elfutils-default-yama-scope-0.189-3.fc39.noarch 73/140 Running scriptlet: elfutils-default-yama-scope-0.189-3.fc39.noarch 73/140 Installing : elfutils-libs-0.189-3.fc39.s390x 74/140 Installing : alternatives-1.24-1.fc39.s390x 75/140 Installing : p11-kit-trust-0.24.1-6.fc38.s390x 76/140 Running scriptlet: p11-kit-trust-0.24.1-6.fc38.s390x 76/140 Installing : libbrotli-1.0.9-12.fc39.s390x 77/140 Installing : libcap-ng-0.8.3-6.fc39.s390x 78/140 Installing : audit-libs-3.1.1-3.fc39.s390x 79/140 Installing : libsemanage-3.5-3.fc39.s390x 80/140 Installing : libeconf-0.4.0-5.fc38.s390x 81/140 Installing : shadow-utils-2:4.13-7.fc39.s390x 82/140 Installing : libnghttp2-1.55.1-1.fc39.s390x 83/140 Installing : libsigsegv-2.14-4.fc38.s390x 84/140 Installing : gawk-5.2.2-1.fc39.s390x 85/140 Installing : libunistring1.0-1.0-1.fc38.s390x 86/140 Installing : libidn2-2.3.4-2.fc38.s390x 87/140 Installing : gnutls-3.8.0-6.fc39.s390x 88/140 Installing : glib2-2.77.0-7.fc39.s390x 89/140 Installing : libpsl-0.21.2-3.fc39.s390x 90/140 Installing : libverto-0.3.2-5.fc38.s390x 91/140 Installing : libyaml-0.2.5-9.fc38.s390x 92/140 Installing : mpdecimal-2.5.1-6.fc38.s390x 93/140 Installing : npth-1.6-13.fc39.s390x 94/140 Installing : coreutils-common-9.3-1.fc39.s390x 95/140 Installing : openssl-libs-1:3.0.8-2.fc39.s390x 96/140 Installing : coreutils-9.3-1.fc39.s390x 97/140 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 98/140 Installing : ca-certificates-2023.2.60-2.fc38.noarch 98/140 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 98/140 Installing : krb5-libs-1.21-2.fc39.s390x 99/140 Installing : libtirpc-1.3.3-1.rc1.fc39.s390x 100/140 Installing : zchunk-libs-1.3.1-1.fc39.s390x 101/140 Installing : libnsl2-2.0.0-5.fc38.s390x 102/140 Installing : libssh-0.10.5-1.fc39.s390x 103/140 Installing : python-pip-wheel-23.1.2-2.fc39.noarch 104/140 Installing : python3-3.12.0~b4-1.fc39.s390x 105/140 Installing : python3-libs-3.12.0~b4-1.fc39.s390x 106/140 Installing : python3-libcomps-0.1.19-2.fc39.s390x 107/140 Installing : python3-dbus-1.3.2-3.fc39.s390x 108/140 Installing : python3-distro-1.8.0-5.fc39.noarch 109/140 Installing : python3-six-1.16.0-11.fc39.noarch 110/140 Installing : python3-dateutil-1:2.8.2-9.fc39.noarch 111/140 Installing : python3-systemd-235-4.fc39.s390x 112/140 Installing : libarchive-3.6.1-5.fc39.s390x 113/140 Installing : libevent-2.1.12-8.fc38.s390x 114/140 Installing : openldap-2.6.4-3.fc39.s390x 115/140 Installing : libcurl-8.2.0-1.fc39.s390x 116/140 Running scriptlet: tpm2-tss-4.0.1-3.fc38.s390x 117/140 useradd: Warning: missing or non-executable shell '/usr/sbin/nologin' Installing : tpm2-tss-4.0.1-3.fc38.s390x 117/140 Installing : gnupg2-2.4.3-1.fc39.s390x 118/140 Installing : gpgme-1.20.0-4.fc39.s390x 119/140 Installing : librepo-1.15.1-3.fc39.s390x 120/140 Installing : python3-gpg-1.20.0-4.fc39.s390x 121/140 Installing : ima-evm-utils-1.5-1.fc39.s390x 122/140 Installing : curl-8.2.0-1.fc39.s390x 123/140 Installing : libfsverity-1.4-9.fc38.s390x 124/140 Installing : rpm-sequoia-1.4.1-1.fc39.s390x 125/140 Installing : rpm-libs-4.18.91-7.fc39.s390x 126/140 Installing : libmodulemd-2.15.0-4.fc39.s390x 127/140 Installing : libsolv-0.7.24-8.fc39.s390x 128/140 Installing : libdnf-0.70.1-4.fc39.s390x 129/140 Installing : python3-libdnf-0.70.1-4.fc39.s390x 130/140 Installing : python3-hawkey-0.70.1-4.fc39.s390x 131/140 Installing : libdnf5-5.1.0-1.fc39.s390x 132/140 warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew Installing : dnf-data-4.16.1-3.fc39.noarch 133/140 Installing : rpm-build-libs-4.18.91-7.fc39.s390x 134/140 Installing : rpm-sign-libs-4.18.91-7.fc39.s390x 135/140 Installing : python3-rpm-4.18.91-7.fc39.s390x 136/140 Installing : python3-dnf-4.16.1-3.fc39.noarch 137/140 Installing : python3-dnf-plugins-core-4.4.1-4.fc39.noarch 138/140 Installing : dnf-plugins-core-4.4.1-4.fc39.noarch 139/140 Running scriptlet: rpm-4.18.91-7.fc39.s390x 140/140 Installing : rpm-4.18.91-7.fc39.s390x 140/140 Running scriptlet: filesystem-3.18-4.fc39.s390x 140/140 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 140/140 Running scriptlet: rpm-4.18.91-7.fc39.s390x 140/140 Verifying : alternatives-1.24-1.fc39.s390x 1/140 Verifying : audit-libs-3.1.1-3.fc39.s390x 2/140 Verifying : basesystem-11-17.fc39.noarch 3/140 Verifying : bash-5.2.15-3.fc38.s390x 4/140 Verifying : bzip2-libs-1.0.8-16.fc39.s390x 5/140 Verifying : ca-certificates-2023.2.60-2.fc38.noarch 6/140 Verifying : coreutils-9.3-1.fc39.s390x 7/140 Verifying : coreutils-common-9.3-1.fc39.s390x 8/140 Verifying : crypto-policies-20230614-1.git5f3458e.fc39.noarc 9/140 Verifying : curl-8.2.0-1.fc39.s390x 10/140 Verifying : cyrus-sasl-lib-2.1.28-10.fc39.s390x 11/140 Verifying : dbus-libs-1:1.14.8-1.fc39.s390x 12/140 Verifying : dnf-data-4.16.1-3.fc39.noarch 13/140 Verifying : dnf-plugins-core-4.4.1-4.fc39.noarch 14/140 Verifying : elfutils-default-yama-scope-0.189-3.fc39.noarch 15/140 Verifying : elfutils-libelf-0.189-3.fc39.s390x 16/140 Verifying : elfutils-libs-0.189-3.fc39.s390x 17/140 Verifying : expat-2.5.0-2.fc38.s390x 18/140 Verifying : fedora-gpg-keys-39-0.3.noarch 19/140 Verifying : fedora-release-39-0.21.noarch 20/140 Verifying : fedora-release-common-39-0.21.noarch 21/140 Verifying : fedora-release-identity-basic-39-0.21.noarch 22/140 Verifying : fedora-repos-39-0.3.noarch 23/140 Verifying : fedora-repos-rawhide-39-0.3.noarch 24/140 Verifying : file-libs-5.44-4.fc39.s390x 25/140 Verifying : filesystem-3.18-4.fc39.s390x 26/140 Verifying : findutils-1:4.9.0-4.fc39.s390x 27/140 Verifying : fmt-10.0.0-2.fc39.s390x 28/140 Verifying : gawk-5.2.2-1.fc39.s390x 29/140 Verifying : gdbm-libs-1:1.23-3.fc38.s390x 30/140 Verifying : glib2-2.77.0-7.fc39.s390x 31/140 Verifying : glibc-2.37.9000-17.fc39.s390x 32/140 Verifying : glibc-common-2.37.9000-17.fc39.s390x 33/140 Verifying : glibc-minimal-langpack-2.37.9000-17.fc39.s390x 34/140 Verifying : gmp-1:6.2.1-4.fc38.s390x 35/140 Verifying : gnupg2-2.4.3-1.fc39.s390x 36/140 Verifying : gnutls-3.8.0-6.fc39.s390x 37/140 Verifying : gpgme-1.20.0-4.fc39.s390x 38/140 Verifying : grep-3.11-1.fc39.s390x 39/140 Verifying : ima-evm-utils-1.5-1.fc39.s390x 40/140 Verifying : json-c-0.16-4.fc38.s390x 41/140 Verifying : keyutils-libs-1.6.1-6.fc38.s390x 42/140 Verifying : krb5-libs-1.21-2.fc39.s390x 43/140 Verifying : libacl-2.3.1-7.fc39.s390x 44/140 Verifying : libarchive-3.6.1-5.fc39.s390x 45/140 Verifying : libassuan-2.5.6-1.fc39.s390x 46/140 Verifying : libattr-2.5.1-7.fc39.s390x 47/140 Verifying : libb2-0.98.1-8.fc38.s390x 48/140 Verifying : libblkid-2.39.1-2.fc39.s390x 49/140 Verifying : libbrotli-1.0.9-12.fc39.s390x 50/140 Verifying : libcap-2.48-6.fc38.s390x 51/140 Verifying : libcap-ng-0.8.3-6.fc39.s390x 52/140 Verifying : libcom_err-1.47.0-1.fc39.s390x 53/140 Verifying : libcomps-0.1.19-2.fc39.s390x 54/140 Verifying : libcurl-8.2.0-1.fc39.s390x 55/140 Verifying : libdnf-0.70.1-4.fc39.s390x 56/140 Verifying : libdnf5-5.1.0-1.fc39.s390x 57/140 Verifying : libeconf-0.4.0-5.fc38.s390x 58/140 Verifying : libevent-2.1.12-8.fc38.s390x 59/140 Verifying : libffi-3.4.4-3.fc39.s390x 60/140 Verifying : libfsverity-1.4-9.fc38.s390x 61/140 Verifying : libgcc-13.1.1-4.fc39.s390x 62/140 Verifying : libgcrypt-1.10.2-1.fc39.s390x 63/140 Verifying : libgomp-13.1.1-4.fc39.s390x 64/140 Verifying : libgpg-error-1.47-1.fc39.s390x 65/140 Verifying : libidn2-2.3.4-2.fc38.s390x 66/140 Verifying : libksba-1.6.4-1.fc39.s390x 67/140 Verifying : libmodulemd-2.15.0-4.fc39.s390x 68/140 Verifying : libmount-2.39.1-2.fc39.s390x 69/140 Verifying : libnghttp2-1.55.1-1.fc39.s390x 70/140 Verifying : libnsl2-2.0.0-5.fc38.s390x 71/140 Verifying : libpsl-0.21.2-3.fc39.s390x 72/140 Verifying : librepo-1.15.1-3.fc39.s390x 73/140 Verifying : libreport-filesystem-2.17.11-2.fc39.noarch 74/140 Verifying : libselinux-3.5-4.fc39.s390x 75/140 Verifying : libsemanage-3.5-3.fc39.s390x 76/140 Verifying : libsepol-3.5-1.fc39.s390x 77/140 Verifying : libsigsegv-2.14-4.fc38.s390x 78/140 Verifying : libsmartcols-2.39.1-2.fc39.s390x 79/140 Verifying : libsolv-0.7.24-8.fc39.s390x 80/140 Verifying : libssh-0.10.5-1.fc39.s390x 81/140 Verifying : libssh-config-0.10.5-1.fc39.noarch 82/140 Verifying : libstdc++-13.1.1-4.fc39.s390x 83/140 Verifying : libtasn1-4.19.0-2.fc38.s390x 84/140 Verifying : libtirpc-1.3.3-1.rc1.fc39.s390x 85/140 Verifying : libunistring-1.1-3.fc38.s390x 86/140 Verifying : libunistring1.0-1.0-1.fc38.s390x 87/140 Verifying : libuuid-2.39.1-2.fc39.s390x 88/140 Verifying : libverto-0.3.2-5.fc38.s390x 89/140 Verifying : libxcrypt-4.4.36-1.fc39.s390x 90/140 Verifying : libxml2-2.10.4-2.fc39.s390x 91/140 Verifying : libyaml-0.2.5-9.fc38.s390x 92/140 Verifying : libzstd-1.5.5-1.fc39.s390x 93/140 Verifying : lua-libs-5.4.4-9.fc39.s390x 94/140 Verifying : lz4-libs-1.9.4-3.fc39.s390x 95/140 Verifying : mpdecimal-2.5.1-6.fc38.s390x 96/140 Verifying : mpfr-4.2.0-2.fc39.s390x 97/140 Verifying : ncurses-base-6.4-5.20230520.fc39.noarch 98/140 Verifying : ncurses-libs-6.4-5.20230520.fc39.s390x 99/140 Verifying : nettle-3.9.1-1.fc39.s390x 100/140 Verifying : npth-1.6-13.fc39.s390x 101/140 Verifying : openldap-2.6.4-3.fc39.s390x 102/140 Verifying : openssl-libs-1:3.0.8-2.fc39.s390x 103/140 Verifying : p11-kit-0.24.1-6.fc38.s390x 104/140 Verifying : p11-kit-trust-0.24.1-6.fc38.s390x 105/140 Verifying : pcre2-10.42-1.fc38.1.s390x 106/140 Verifying : pcre2-syntax-10.42-1.fc38.1.noarch 107/140 Verifying : popt-1.19-2.fc38.s390x 108/140 Verifying : publicsuffix-list-dafsa-20230614-1.fc39.noarch 109/140 Verifying : python-pip-wheel-23.1.2-2.fc39.noarch 110/140 Verifying : python3-3.12.0~b4-1.fc39.s390x 111/140 Verifying : python3-dateutil-1:2.8.2-9.fc39.noarch 112/140 Verifying : python3-dbus-1.3.2-3.fc39.s390x 113/140 Verifying : python3-distro-1.8.0-5.fc39.noarch 114/140 Verifying : python3-dnf-4.16.1-3.fc39.noarch 115/140 Verifying : python3-dnf-plugins-core-4.4.1-4.fc39.noarch 116/140 Verifying : python3-gpg-1.20.0-4.fc39.s390x 117/140 Verifying : python3-hawkey-0.70.1-4.fc39.s390x 118/140 Verifying : python3-libcomps-0.1.19-2.fc39.s390x 119/140 Verifying : python3-libdnf-0.70.1-4.fc39.s390x 120/140 Verifying : python3-libs-3.12.0~b4-1.fc39.s390x 121/140 Verifying : python3-rpm-4.18.91-7.fc39.s390x 122/140 Verifying : python3-six-1.16.0-11.fc39.noarch 123/140 Verifying : python3-systemd-235-4.fc39.s390x 124/140 Verifying : readline-8.2-3.fc38.s390x 125/140 Verifying : rpm-4.18.91-7.fc39.s390x 126/140 Verifying : rpm-build-libs-4.18.91-7.fc39.s390x 127/140 Verifying : rpm-libs-4.18.91-7.fc39.s390x 128/140 Verifying : rpm-sequoia-1.4.1-1.fc39.s390x 129/140 Verifying : rpm-sign-libs-4.18.91-7.fc39.s390x 130/140 Verifying : sed-4.8-12.fc38.s390x 131/140 Verifying : setup-2.14.3-3.fc39.noarch 132/140 Verifying : shadow-utils-2:4.13-7.fc39.s390x 133/140 Verifying : sqlite-libs-3.42.0-6.fc39.s390x 134/140 Verifying : systemd-libs-254~rc2-4.fc39.s390x 135/140 Verifying : tpm2-tss-4.0.1-3.fc38.s390x 136/140 Verifying : tzdata-2023c-1.fc39.noarch 137/140 Verifying : xz-libs-5.4.3-1.fc39.s390x 138/140 Verifying : zchunk-libs-1.3.1-1.fc39.s390x 139/140 Verifying : zlib-1.2.13-3.fc38.s390x 140/140 Installed products updated. Installed: alternatives-1.24-1.fc39.s390x audit-libs-3.1.1-3.fc39.s390x basesystem-11-17.fc39.noarch bash-5.2.15-3.fc38.s390x bzip2-libs-1.0.8-16.fc39.s390x ca-certificates-2023.2.60-2.fc38.noarch coreutils-9.3-1.fc39.s390x coreutils-common-9.3-1.fc39.s390x crypto-policies-20230614-1.git5f3458e.fc39.noarch curl-8.2.0-1.fc39.s390x cyrus-sasl-lib-2.1.28-10.fc39.s390x dbus-libs-1:1.14.8-1.fc39.s390x dnf-data-4.16.1-3.fc39.noarch dnf-plugins-core-4.4.1-4.fc39.noarch elfutils-default-yama-scope-0.189-3.fc39.noarch elfutils-libelf-0.189-3.fc39.s390x elfutils-libs-0.189-3.fc39.s390x expat-2.5.0-2.fc38.s390x fedora-gpg-keys-39-0.3.noarch fedora-release-39-0.21.noarch fedora-release-common-39-0.21.noarch fedora-release-identity-basic-39-0.21.noarch fedora-repos-39-0.3.noarch fedora-repos-rawhide-39-0.3.noarch file-libs-5.44-4.fc39.s390x filesystem-3.18-4.fc39.s390x findutils-1:4.9.0-4.fc39.s390x fmt-10.0.0-2.fc39.s390x gawk-5.2.2-1.fc39.s390x gdbm-libs-1:1.23-3.fc38.s390x glib2-2.77.0-7.fc39.s390x glibc-2.37.9000-17.fc39.s390x glibc-common-2.37.9000-17.fc39.s390x glibc-minimal-langpack-2.37.9000-17.fc39.s390x gmp-1:6.2.1-4.fc38.s390x gnupg2-2.4.3-1.fc39.s390x gnutls-3.8.0-6.fc39.s390x gpgme-1.20.0-4.fc39.s390x grep-3.11-1.fc39.s390x ima-evm-utils-1.5-1.fc39.s390x json-c-0.16-4.fc38.s390x keyutils-libs-1.6.1-6.fc38.s390x krb5-libs-1.21-2.fc39.s390x libacl-2.3.1-7.fc39.s390x libarchive-3.6.1-5.fc39.s390x libassuan-2.5.6-1.fc39.s390x libattr-2.5.1-7.fc39.s390x libb2-0.98.1-8.fc38.s390x libblkid-2.39.1-2.fc39.s390x libbrotli-1.0.9-12.fc39.s390x libcap-2.48-6.fc38.s390x libcap-ng-0.8.3-6.fc39.s390x libcom_err-1.47.0-1.fc39.s390x libcomps-0.1.19-2.fc39.s390x libcurl-8.2.0-1.fc39.s390x libdnf-0.70.1-4.fc39.s390x libdnf5-5.1.0-1.fc39.s390x libeconf-0.4.0-5.fc38.s390x libevent-2.1.12-8.fc38.s390x libffi-3.4.4-3.fc39.s390x libfsverity-1.4-9.fc38.s390x libgcc-13.1.1-4.fc39.s390x libgcrypt-1.10.2-1.fc39.s390x libgomp-13.1.1-4.fc39.s390x libgpg-error-1.47-1.fc39.s390x libidn2-2.3.4-2.fc38.s390x libksba-1.6.4-1.fc39.s390x libmodulemd-2.15.0-4.fc39.s390x libmount-2.39.1-2.fc39.s390x libnghttp2-1.55.1-1.fc39.s390x libnsl2-2.0.0-5.fc38.s390x libpsl-0.21.2-3.fc39.s390x librepo-1.15.1-3.fc39.s390x libreport-filesystem-2.17.11-2.fc39.noarch libselinux-3.5-4.fc39.s390x libsemanage-3.5-3.fc39.s390x libsepol-3.5-1.fc39.s390x libsigsegv-2.14-4.fc38.s390x libsmartcols-2.39.1-2.fc39.s390x libsolv-0.7.24-8.fc39.s390x libssh-0.10.5-1.fc39.s390x libssh-config-0.10.5-1.fc39.noarch libstdc++-13.1.1-4.fc39.s390x libtasn1-4.19.0-2.fc38.s390x libtirpc-1.3.3-1.rc1.fc39.s390x libunistring-1.1-3.fc38.s390x libunistring1.0-1.0-1.fc38.s390x libuuid-2.39.1-2.fc39.s390x libverto-0.3.2-5.fc38.s390x libxcrypt-4.4.36-1.fc39.s390x libxml2-2.10.4-2.fc39.s390x libyaml-0.2.5-9.fc38.s390x libzstd-1.5.5-1.fc39.s390x lua-libs-5.4.4-9.fc39.s390x lz4-libs-1.9.4-3.fc39.s390x mpdecimal-2.5.1-6.fc38.s390x mpfr-4.2.0-2.fc39.s390x ncurses-base-6.4-5.20230520.fc39.noarch ncurses-libs-6.4-5.20230520.fc39.s390x nettle-3.9.1-1.fc39.s390x npth-1.6-13.fc39.s390x openldap-2.6.4-3.fc39.s390x openssl-libs-1:3.0.8-2.fc39.s390x p11-kit-0.24.1-6.fc38.s390x p11-kit-trust-0.24.1-6.fc38.s390x pcre2-10.42-1.fc38.1.s390x pcre2-syntax-10.42-1.fc38.1.noarch popt-1.19-2.fc38.s390x publicsuffix-list-dafsa-20230614-1.fc39.noarch python-pip-wheel-23.1.2-2.fc39.noarch python3-3.12.0~b4-1.fc39.s390x python3-dateutil-1:2.8.2-9.fc39.noarch python3-dbus-1.3.2-3.fc39.s390x python3-distro-1.8.0-5.fc39.noarch python3-dnf-4.16.1-3.fc39.noarch python3-dnf-plugins-core-4.4.1-4.fc39.noarch python3-gpg-1.20.0-4.fc39.s390x python3-hawkey-0.70.1-4.fc39.s390x python3-libcomps-0.1.19-2.fc39.s390x python3-libdnf-0.70.1-4.fc39.s390x python3-libs-3.12.0~b4-1.fc39.s390x python3-rpm-4.18.91-7.fc39.s390x python3-six-1.16.0-11.fc39.noarch python3-systemd-235-4.fc39.s390x readline-8.2-3.fc38.s390x rpm-4.18.91-7.fc39.s390x rpm-build-libs-4.18.91-7.fc39.s390x rpm-libs-4.18.91-7.fc39.s390x rpm-sequoia-1.4.1-1.fc39.s390x rpm-sign-libs-4.18.91-7.fc39.s390x sed-4.8-12.fc38.s390x setup-2.14.3-3.fc39.noarch shadow-utils-2:4.13-7.fc39.s390x sqlite-libs-3.42.0-6.fc39.s390x systemd-libs-254~rc2-4.fc39.s390x tpm2-tss-4.0.1-3.fc38.s390x tzdata-2023c-1.fc39.noarch xz-libs-5.4.3-1.fc39.s390x zchunk-libs-1.3.1-1.fc39.s390x zlib-1.2.13-3.fc38.s390x Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1689992826.447392/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (direct choice) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 8.2 MB/s | 1.9 MB 00:00 Additional repo http_kojipkgs_fedoraproject_org 9.9 MB/s | 64 MB 00:06 fedora 6.4 MB/s | 63 MB 00:09 Last metadata expiration check: 0:00:01 ago on Sat Jul 22 02:29:17 2023. Dependencies resolved. ======================================================================================================================================== Package Arch Version Repository Size ======================================================================================================================================== Installing group/module packages: bash s390x 5.2.15-3.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.8 M bzip2 s390x 1.0.8-16.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 53 k coreutils s390x 9.3-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M cpio s390x 2.14-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 276 k diffutils s390x 3.10-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 398 k fedora-release-common noarch 39-0.21 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 17 k findutils s390x 1:4.9.0-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 487 k gawk s390x 5.2.2-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M glibc-minimal-langpack s390x 2.37.9000-17.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 64 k grep s390x 3.11-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 294 k gzip s390x 1.12-3.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 165 k info s390x 7.0.3-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 192 k patch s390x 2.7.6-21.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 134 k redhat-rpm-config noarch 261-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 77 k rpm-build s390x 4.18.91-7.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 70 k sed s390x 4.8-12.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 300 k shadow-utils s390x 2:4.13-7.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.2 M tar s390x 2:1.34-8.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 896 k unzip s390x 6.0-60.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 194 k util-linux s390x 2.39.1-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 1.1 M which s390x 2.21-39.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 43 k xz s390x 5.4.3-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 531 k Installing dependencies: alternatives s390x 1.24-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 40 k ansible-srpm-macros noarch 1-10.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 21 k audit-libs s390x 3.1.1-3.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 121 k authselect s390x 1.4.2-2.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 139 k authselect-libs s390x 1.4.2-2.fc38 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systemd-libs s390x 254~rc2-4.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 693 k tzdata noarch 2023c-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 433 k util-linux-core s390x 2.39.1-2.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 482 k xxhash-libs s390x 0.8.1-5.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 38 k xz-libs s390x 5.4.3-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 114 k zip s390x 3.0-36.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 283 k zlib s390x 1.2.13-3.fc38 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 101 k zstd s390x 1.5.5-1.fc39 http_kojipkgs_fedoraproject_org_repos_rawhide_latest_basearch 505 k Installing Groups: Buildsystem building group Transaction Summary ======================================================================================================================================== Install 154 Packages Total download size: 53 M Installed size: 182 M Downloading Packages: (1/154): ansible-srpm-macros-1-10.fc39.noarch.r 19 kB/s | 21 kB 00:01 (2/154): alternatives-1.24-1.fc39.s390x.rpm 33 kB/s | 40 kB 00:01 (3/154): audit-libs-3.1.1-3.fc39.s390x.rpm 87 kB/s | 121 kB 00:01 (4/154): authselect-1.4.2-2.fc38.s390x.rpm 272 kB/s | 139 kB 00:00 (5/154): basesystem-11-17.fc39.noarch.rpm 21 kB/s | 7.0 kB 00:00 (6/154): authselect-libs-1.4.2-2.fc38.s390x.rpm 342 kB/s | 235 kB 00:00 (7/154): bash-5.2.15-3.fc38.s390x.rpm 2.1 MB/s | 1.8 MB 00:00 (8/154): binutils-gold-2.40-9.fc39.s390x.rpm 1.4 MB/s | 992 kB 00:00 (9/154): bzip2-1.0.8-16.fc39.s390x.rpm 156 kB/s | 53 kB 00:00 (10/154): binutils-2.40-9.fc39.s390x.rpm 4.9 MB/s | 5.9 MB 00:01 (11/154): bzip2-libs-1.0.8-16.fc39.s390x.rpm 134 kB/s | 46 kB 00:00 (12/154): ca-certificates-2023.2.60-2.fc38.noar 2.4 MB/s | 845 kB 00:00 (13/154): coreutils-9.3-1.fc39.s390x.rpm 3.3 MB/s | 1.1 MB 00:00 (14/154): coreutils-common-9.3-1.fc39.s390x.rpm 4.1 MB/s | 2.1 MB 00:00 (15/154): cpio-2.14-2.fc39.s390x.rpm 807 kB/s | 276 kB 00:00 (16/154): cracklib-2.9.11-1.fc39.s390x.rpm 241 kB/s | 83 kB 00:00 (17/154): crypto-policies-20230614-1.git5f3458e 191 kB/s | 65 kB 00:00 (18/154): curl-8.2.0-1.fc39.s390x.rpm 1.0 MB/s | 346 kB 00:00 (19/154): cyrus-sasl-lib-2.1.28-10.fc39.s390x.r 2.3 MB/s | 819 kB 00:00 (20/154): debugedit-5.0-9.fc39.s390x.rpm 235 kB/s | 80 kB 00:00 (21/154): diffutils-3.10-2.fc39.s390x.rpm 1.1 MB/s | 398 kB 00:00 (22/154): dwz-0.15-2.fc38.s390x.rpm 423 kB/s | 144 kB 00:00 (23/154): ed-1.19-2.fc38.s390x.rpm 234 kB/s | 80 kB 00:00 (24/154): efi-srpm-macros-5-8.fc39.noarch.rpm 65 kB/s | 22 kB 00:00 (25/154): elfutils-0.189-3.fc39.s390x.rpm 1.6 MB/s | 556 kB 00:00 (26/154): elfutils-debuginfod-client-0.189-3.fc 113 kB/s | 39 kB 00:00 (27/154): elfutils-default-yama-scope-0.189-3.f 39 kB/s | 13 kB 00:00 (28/154): elfutils-libs-0.189-3.fc39.s390x.rpm 802 kB/s | 275 kB 00:00 (29/154): fedora-gpg-keys-39-0.3.noarch.rpm 342 kB/s | 117 kB 00:00 (30/154): fedora-release-39-0.21.noarch.rpm 20 kB/s | 6.9 kB 00:00 (31/154): fedora-release-common-39-0.21.noarch. 49 kB/s | 17 kB 00:00 (32/154): fedora-release-identity-basic-39-0.21 23 kB/s | 7.6 kB 00:00 (33/154): fedora-repos-39-0.3.noarch.rpm 25 kB/s | 8.8 kB 00:00 (34/154): fedora-repos-rawhide-39-0.3.noarch.rp 25 kB/s | 8.4 kB 00:00 (35/154): file-5.44-4.fc39.s390x.rpm 142 kB/s | 49 kB 00:00 (36/154): file-libs-5.44-4.fc39.s390x.rpm 2.1 MB/s | 736 kB 00:00 (37/154): filesystem-3.18-4.fc39.s390x.rpm 2.0 MB/s | 1.1 MB 00:00 (38/154): findutils-4.9.0-4.fc39.s390x.rpm 1.4 MB/s | 487 kB 00:00 (39/154): elfutils-libelf-0.189-3.fc39.s390x.rp 88 kB/s | 200 kB 00:02 (40/154): fonts-srpm-macros-2.0.5-11.fc38.noarc 77 kB/s | 26 kB 00:00 (41/154): fpc-srpm-macros-1.3-7.fc38.noarch.rpm 23 kB/s | 7.8 kB 00:00 (42/154): gawk-5.2.2-1.fc39.s390x.rpm 3.1 MB/s | 1.1 MB 00:00 (43/154): gdbm-libs-1.23-3.fc38.s390x.rpm 171 kB/s | 58 kB 00:00 (44/154): ghc-srpm-macros-1.6.1-1.fc38.noarch.r 23 kB/s | 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MB/s | 776 kB 00:00 (60/154): libacl-2.3.1-7.fc39.s390x.rpm 71 kB/s | 24 kB 00:00 (61/154): libarchive-3.6.1-5.fc39.s390x.rpm 1.2 MB/s | 426 kB 00:00 (62/154): libattr-2.5.1-7.fc39.s390x.rpm 54 kB/s | 18 kB 00:00 (63/154): libblkid-2.39.1-2.fc39.s390x.rpm 349 kB/s | 121 kB 00:00 (64/154): libbrotli-1.0.9-12.fc39.s390x.rpm 1.0 MB/s | 343 kB 00:00 (65/154): libcap-2.48-6.fc38.s390x.rpm 198 kB/s | 68 kB 00:00 (66/154): libcap-ng-0.8.3-6.fc39.s390x.rpm 96 kB/s | 32 kB 00:00 (67/154): libcom_err-1.47.0-1.fc39.s390x.rpm 75 kB/s | 26 kB 00:00 (68/154): libcurl-8.2.0-1.fc39.s390x.rpm 1.0 MB/s | 343 kB 00:00 (69/154): libdb-5.3.28-55.fc38.s390x.rpm 2.2 MB/s | 774 kB 00:00 (70/154): libeconf-0.4.0-5.fc38.s390x.rpm 84 kB/s | 28 kB 00:00 (71/154): libevent-2.1.12-8.fc38.s390x.rpm 754 kB/s | 260 kB 00:00 (72/154): libfdisk-2.39.1-2.fc39.s390x.rpm 490 kB/s | 166 kB 00:00 (73/154): libffi-3.4.4-3.fc39.s390x.rpm 103 kB/s | 36 kB 00:00 (74/154): libgcc-13.1.1-4.fc39.s390x.rpm 237 kB/s | 80 kB 00:00 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perl-srpm-macros-1-50.fc39.noarch.rp 24 kB/s | 8.3 kB 00:00 (120/154): pkgconf-1.9.5-1.fc39.s390x.rpm 125 kB/s | 43 kB 00:00 (121/154): pkgconf-m4-1.9.5-1.fc39.noarch.rpm 40 kB/s | 14 kB 00:00 (122/154): pkgconf-pkg-config-1.9.5-1.fc39.s390 28 kB/s | 9.6 kB 00:00 (123/154): popt-1.19-2.fc38.s390x.rpm 183 kB/s | 62 kB 00:00 (124/154): publicsuffix-list-dafsa-20230614-1.f 167 kB/s | 57 kB 00:00 (125/154): pyproject-srpm-macros-1.9.0-1.fc39.n 43 kB/s | 15 kB 00:00 (126/154): python-srpm-macros-3.12-1.fc39.noarc 75 kB/s | 25 kB 00:00 (127/154): qt5-srpm-macros-5.15.10-1.fc39.noarc 23 kB/s | 7.8 kB 00:00 (128/154): qt6-srpm-macros-6.5.1-1.fc39.noarch. 27 kB/s | 9.2 kB 00:00 (129/154): readline-8.2-3.fc38.s390x.rpm 668 kB/s | 229 kB 00:00 (130/154): redhat-rpm-config-261-1.fc39.noarch. 222 kB/s | 77 kB 00:00 (131/154): rpm-4.18.91-7.fc39.s390x.rpm 971 kB/s | 501 kB 00:00 (132/154): rpm-build-4.18.91-7.fc39.s390x.rpm 202 kB/s | 70 kB 00:00 (133/154): rpm-build-libs-4.18.91-7.fc39.s390x. 283 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which-2.21-39.fc39.s390x.rpm 126 kB/s | 43 kB 00:00 (149/154): xxhash-libs-0.8.1-5.fc39.s390x.rpm 112 kB/s | 38 kB 00:00 (150/154): xz-5.4.3-1.fc39.s390x.rpm 1.5 MB/s | 531 kB 00:00 (151/154): xz-libs-5.4.3-1.fc39.s390x.rpm 334 kB/s | 114 kB 00:00 (152/154): zip-3.0-36.fc38.s390x.rpm 828 kB/s | 283 kB 00:00 (153/154): zlib-1.2.13-3.fc38.s390x.rpm 293 kB/s | 101 kB 00:00 (154/154): zstd-1.5.5-1.fc39.s390x.rpm 1.4 MB/s | 505 kB 00:00 -------------------------------------------------------------------------------- Total 2.5 MB/s | 53 MB 00:20 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. 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Verifying : fedora-repos-rawhide-39-0.3.noarch 35/154 Verifying : file-5.44-4.fc39.s390x 36/154 Verifying : file-libs-5.44-4.fc39.s390x 37/154 Verifying : filesystem-3.18-4.fc39.s390x 38/154 Verifying : findutils-1:4.9.0-4.fc39.s390x 39/154 Verifying : fonts-srpm-macros-1:2.0.5-11.fc38.noarch 40/154 Verifying : fpc-srpm-macros-1.3-7.fc38.noarch 41/154 Verifying : gawk-5.2.2-1.fc39.s390x 42/154 Verifying : gdb-minimal-13.2-5.fc39.s390x 43/154 Verifying : gdbm-libs-1:1.23-3.fc38.s390x 44/154 Verifying : ghc-srpm-macros-1.6.1-1.fc38.noarch 45/154 Verifying : glibc-2.37.9000-17.fc39.s390x 46/154 Verifying : glibc-common-2.37.9000-17.fc39.s390x 47/154 Verifying : glibc-gconv-extra-2.37.9000-17.fc39.s390x 48/154 Verifying : glibc-minimal-langpack-2.37.9000-17.fc39.s390x 49/154 Verifying : gmp-1:6.2.1-4.fc38.s390x 50/154 Verifying : gnat-srpm-macros-6-2.fc38.noarch 51/154 Verifying : go-srpm-macros-3.2.0-3.fc39.noarch 52/154 Verifying : grep-3.11-1.fc39.s390x 53/154 Verifying : gzip-1.12-3.fc38.s390x 54/154 Verifying : info-7.0.3-2.fc39.s390x 55/154 Verifying : jansson-2.13.1-6.fc38.s390x 56/154 Verifying : kernel-srpm-macros-1.0-19.fc39.noarch 57/154 Verifying : keyutils-libs-1.6.1-6.fc38.s390x 58/154 Verifying : krb5-libs-1.21-2.fc39.s390x 59/154 Verifying : libacl-2.3.1-7.fc39.s390x 60/154 Verifying : libarchive-3.6.1-5.fc39.s390x 61/154 Verifying : libattr-2.5.1-7.fc39.s390x 62/154 Verifying : libblkid-2.39.1-2.fc39.s390x 63/154 Verifying : libbrotli-1.0.9-12.fc39.s390x 64/154 Verifying : libcap-2.48-6.fc38.s390x 65/154 Verifying : libcap-ng-0.8.3-6.fc39.s390x 66/154 Verifying : libcom_err-1.47.0-1.fc39.s390x 67/154 Verifying : libcurl-8.2.0-1.fc39.s390x 68/154 Verifying : libdb-5.3.28-55.fc38.s390x 69/154 Verifying : libeconf-0.4.0-5.fc38.s390x 70/154 Verifying : libevent-2.1.12-8.fc38.s390x 71/154 Verifying : libfdisk-2.39.1-2.fc39.s390x 72/154 Verifying : libffi-3.4.4-3.fc39.s390x 73/154 Verifying : libgcc-13.1.1-4.fc39.s390x 74/154 Verifying : libgomp-13.1.1-4.fc39.s390x 75/154 Verifying : libidn2-2.3.4-2.fc38.s390x 76/154 Verifying : libmount-2.39.1-2.fc39.s390x 77/154 Verifying : libnghttp2-1.55.1-1.fc39.s390x 78/154 Verifying : libnsl2-2.0.0-5.fc38.s390x 79/154 Verifying : libpkgconf-1.9.5-1.fc39.s390x 80/154 Verifying : libpsl-0.21.2-3.fc39.s390x 81/154 Verifying : libpwquality-1.4.5-5.fc39.s390x 82/154 Verifying : libselinux-3.5-4.fc39.s390x 83/154 Verifying : libsemanage-3.5-3.fc39.s390x 84/154 Verifying : libsepol-3.5-1.fc39.s390x 85/154 Verifying : libsigsegv-2.14-4.fc38.s390x 86/154 Verifying : libsmartcols-2.39.1-2.fc39.s390x 87/154 Verifying : libssh-0.10.5-1.fc39.s390x 88/154 Verifying : libssh-config-0.10.5-1.fc39.noarch 89/154 Verifying : libstdc++-13.1.1-4.fc39.s390x 90/154 Verifying : libtasn1-4.19.0-2.fc38.s390x 91/154 Verifying : libtirpc-1.3.3-1.rc1.fc39.s390x 92/154 Verifying : libunistring-1.1-3.fc38.s390x 93/154 Verifying : libunistring1.0-1.0-1.fc38.s390x 94/154 Verifying : libutempter-1.2.1-9.fc39.s390x 95/154 Verifying : libuuid-2.39.1-2.fc39.s390x 96/154 Verifying : libverto-0.3.2-5.fc38.s390x 97/154 Verifying : libxcrypt-4.4.36-1.fc39.s390x 98/154 Verifying : libxml2-2.10.4-2.fc39.s390x 99/154 Verifying : libzstd-1.5.5-1.fc39.s390x 100/154 Verifying : lua-libs-5.4.4-9.fc39.s390x 101/154 Verifying : lua-srpm-macros-1-8.fc38.noarch 102/154 Verifying : lz4-libs-1.9.4-3.fc39.s390x 103/154 Verifying : mpfr-4.2.0-2.fc39.s390x 104/154 Verifying : ncurses-base-6.4-5.20230520.fc39.noarch 105/154 Verifying : ncurses-libs-6.4-5.20230520.fc39.s390x 106/154 Verifying : ocaml-srpm-macros-8-1.fc39.noarch 107/154 Verifying : openblas-srpm-macros-2-13.fc38.noarch 108/154 Verifying : openldap-2.6.4-3.fc39.s390x 109/154 Verifying : openssl-libs-1:3.0.8-2.fc39.s390x 110/154 Verifying : p11-kit-0.24.1-6.fc38.s390x 111/154 Verifying : p11-kit-trust-0.24.1-6.fc38.s390x 112/154 Verifying : package-notes-srpm-macros-0.5-8.fc39.noarch 113/154 Verifying : pam-1.5.3-1.fc39.s390x 114/154 Verifying : pam-libs-1.5.3-1.fc39.s390x 115/154 Verifying : patch-2.7.6-21.fc39.s390x 116/154 Verifying : pcre2-10.42-1.fc38.1.s390x 117/154 Verifying : pcre2-syntax-10.42-1.fc38.1.noarch 118/154 Verifying : perl-srpm-macros-1-50.fc39.noarch 119/154 Verifying : pkgconf-1.9.5-1.fc39.s390x 120/154 Verifying : pkgconf-m4-1.9.5-1.fc39.noarch 121/154 Verifying : pkgconf-pkg-config-1.9.5-1.fc39.s390x 122/154 Verifying : popt-1.19-2.fc38.s390x 123/154 Verifying : publicsuffix-list-dafsa-20230614-1.fc39.noarch 124/154 Verifying : pyproject-srpm-macros-1.9.0-1.fc39.noarch 125/154 Verifying : python-srpm-macros-3.12-1.fc39.noarch 126/154 Verifying : qt5-srpm-macros-5.15.10-1.fc39.noarch 127/154 Verifying : qt6-srpm-macros-6.5.1-1.fc39.noarch 128/154 Verifying : readline-8.2-3.fc38.s390x 129/154 Verifying : redhat-rpm-config-261-1.fc39.noarch 130/154 Verifying : rpm-4.18.91-7.fc39.s390x 131/154 Verifying : rpm-build-4.18.91-7.fc39.s390x 132/154 Verifying : rpm-build-libs-4.18.91-7.fc39.s390x 133/154 Verifying : rpm-libs-4.18.91-7.fc39.s390x 134/154 Verifying : rpm-sequoia-1.4.1-1.fc39.s390x 135/154 Verifying : rpmautospec-rpm-macros-0.3.5-3.fc39.noarch 136/154 Verifying : rust-srpm-macros-24-2.fc39.noarch 137/154 Verifying : sed-4.8-12.fc38.s390x 138/154 Verifying : setup-2.14.3-3.fc39.noarch 139/154 Verifying : shadow-utils-2:4.13-7.fc39.s390x 140/154 Verifying : sqlite-libs-3.42.0-6.fc39.s390x 141/154 Verifying : systemd-libs-254~rc2-4.fc39.s390x 142/154 Verifying : tar-2:1.34-8.fc39.s390x 143/154 Verifying : tzdata-2023c-1.fc39.noarch 144/154 Verifying : unzip-6.0-60.fc38.s390x 145/154 Verifying : util-linux-2.39.1-2.fc39.s390x 146/154 Verifying : util-linux-core-2.39.1-2.fc39.s390x 147/154 Verifying : which-2.21-39.fc39.s390x 148/154 Verifying : xxhash-libs-0.8.1-5.fc39.s390x 149/154 Verifying : xz-5.4.3-1.fc39.s390x 150/154 Verifying : xz-libs-5.4.3-1.fc39.s390x 151/154 Verifying : zip-3.0-36.fc38.s390x 152/154 Verifying : zlib-1.2.13-3.fc38.s390x 153/154 Verifying : zstd-1.5.5-1.fc39.s390x 154/154 Installed: alternatives-1.24-1.fc39.s390x ansible-srpm-macros-1-10.fc39.noarch audit-libs-3.1.1-3.fc39.s390x authselect-1.4.2-2.fc38.s390x authselect-libs-1.4.2-2.fc38.s390x basesystem-11-17.fc39.noarch bash-5.2.15-3.fc38.s390x binutils-2.40-9.fc39.s390x binutils-gold-2.40-9.fc39.s390x bzip2-1.0.8-16.fc39.s390x bzip2-libs-1.0.8-16.fc39.s390x ca-certificates-2023.2.60-2.fc38.noarch coreutils-9.3-1.fc39.s390x coreutils-common-9.3-1.fc39.s390x cpio-2.14-2.fc39.s390x cracklib-2.9.11-1.fc39.s390x crypto-policies-20230614-1.git5f3458e.fc39.noarch curl-8.2.0-1.fc39.s390x cyrus-sasl-lib-2.1.28-10.fc39.s390x debugedit-5.0-9.fc39.s390x diffutils-3.10-2.fc39.s390x dwz-0.15-2.fc38.s390x ed-1.19-2.fc38.s390x efi-srpm-macros-5-8.fc39.noarch elfutils-0.189-3.fc39.s390x elfutils-debuginfod-client-0.189-3.fc39.s390x elfutils-default-yama-scope-0.189-3.fc39.noarch elfutils-libelf-0.189-3.fc39.s390x elfutils-libs-0.189-3.fc39.s390x fedora-gpg-keys-39-0.3.noarch fedora-release-39-0.21.noarch fedora-release-common-39-0.21.noarch fedora-release-identity-basic-39-0.21.noarch fedora-repos-39-0.3.noarch fedora-repos-rawhide-39-0.3.noarch file-5.44-4.fc39.s390x file-libs-5.44-4.fc39.s390x filesystem-3.18-4.fc39.s390x findutils-1:4.9.0-4.fc39.s390x fonts-srpm-macros-1:2.0.5-11.fc38.noarch fpc-srpm-macros-1.3-7.fc38.noarch gawk-5.2.2-1.fc39.s390x gdb-minimal-13.2-5.fc39.s390x gdbm-libs-1:1.23-3.fc38.s390x ghc-srpm-macros-1.6.1-1.fc38.noarch glibc-2.37.9000-17.fc39.s390x glibc-common-2.37.9000-17.fc39.s390x glibc-gconv-extra-2.37.9000-17.fc39.s390x glibc-minimal-langpack-2.37.9000-17.fc39.s390x gmp-1:6.2.1-4.fc38.s390x gnat-srpm-macros-6-2.fc38.noarch go-srpm-macros-3.2.0-3.fc39.noarch grep-3.11-1.fc39.s390x gzip-1.12-3.fc38.s390x info-7.0.3-2.fc39.s390x jansson-2.13.1-6.fc38.s390x kernel-srpm-macros-1.0-19.fc39.noarch keyutils-libs-1.6.1-6.fc38.s390x krb5-libs-1.21-2.fc39.s390x libacl-2.3.1-7.fc39.s390x libarchive-3.6.1-5.fc39.s390x libattr-2.5.1-7.fc39.s390x libblkid-2.39.1-2.fc39.s390x libbrotli-1.0.9-12.fc39.s390x libcap-2.48-6.fc38.s390x libcap-ng-0.8.3-6.fc39.s390x libcom_err-1.47.0-1.fc39.s390x libcurl-8.2.0-1.fc39.s390x libdb-5.3.28-55.fc38.s390x libeconf-0.4.0-5.fc38.s390x libevent-2.1.12-8.fc38.s390x libfdisk-2.39.1-2.fc39.s390x libffi-3.4.4-3.fc39.s390x libgcc-13.1.1-4.fc39.s390x libgomp-13.1.1-4.fc39.s390x libidn2-2.3.4-2.fc38.s390x libmount-2.39.1-2.fc39.s390x libnghttp2-1.55.1-1.fc39.s390x libnsl2-2.0.0-5.fc38.s390x libpkgconf-1.9.5-1.fc39.s390x libpsl-0.21.2-3.fc39.s390x libpwquality-1.4.5-5.fc39.s390x libselinux-3.5-4.fc39.s390x libsemanage-3.5-3.fc39.s390x libsepol-3.5-1.fc39.s390x libsigsegv-2.14-4.fc38.s390x libsmartcols-2.39.1-2.fc39.s390x libssh-0.10.5-1.fc39.s390x libssh-config-0.10.5-1.fc39.noarch libstdc++-13.1.1-4.fc39.s390x libtasn1-4.19.0-2.fc38.s390x libtirpc-1.3.3-1.rc1.fc39.s390x libunistring-1.1-3.fc38.s390x libunistring1.0-1.0-1.fc38.s390x libutempter-1.2.1-9.fc39.s390x libuuid-2.39.1-2.fc39.s390x libverto-0.3.2-5.fc38.s390x libxcrypt-4.4.36-1.fc39.s390x libxml2-2.10.4-2.fc39.s390x libzstd-1.5.5-1.fc39.s390x lua-libs-5.4.4-9.fc39.s390x lua-srpm-macros-1-8.fc38.noarch lz4-libs-1.9.4-3.fc39.s390x mpfr-4.2.0-2.fc39.s390x ncurses-base-6.4-5.20230520.fc39.noarch ncurses-libs-6.4-5.20230520.fc39.s390x ocaml-srpm-macros-8-1.fc39.noarch openblas-srpm-macros-2-13.fc38.noarch openldap-2.6.4-3.fc39.s390x openssl-libs-1:3.0.8-2.fc39.s390x p11-kit-0.24.1-6.fc38.s390x p11-kit-trust-0.24.1-6.fc38.s390x package-notes-srpm-macros-0.5-8.fc39.noarch pam-1.5.3-1.fc39.s390x pam-libs-1.5.3-1.fc39.s390x patch-2.7.6-21.fc39.s390x pcre2-10.42-1.fc38.1.s390x pcre2-syntax-10.42-1.fc38.1.noarch perl-srpm-macros-1-50.fc39.noarch pkgconf-1.9.5-1.fc39.s390x pkgconf-m4-1.9.5-1.fc39.noarch pkgconf-pkg-config-1.9.5-1.fc39.s390x popt-1.19-2.fc38.s390x publicsuffix-list-dafsa-20230614-1.fc39.noarch pyproject-srpm-macros-1.9.0-1.fc39.noarch python-srpm-macros-3.12-1.fc39.noarch qt5-srpm-macros-5.15.10-1.fc39.noarch qt6-srpm-macros-6.5.1-1.fc39.noarch readline-8.2-3.fc38.s390x redhat-rpm-config-261-1.fc39.noarch rpm-4.18.91-7.fc39.s390x rpm-build-4.18.91-7.fc39.s390x rpm-build-libs-4.18.91-7.fc39.s390x rpm-libs-4.18.91-7.fc39.s390x rpm-sequoia-1.4.1-1.fc39.s390x rpmautospec-rpm-macros-0.3.5-3.fc39.noarch rust-srpm-macros-24-2.fc39.noarch sed-4.8-12.fc38.s390x setup-2.14.3-3.fc39.noarch shadow-utils-2:4.13-7.fc39.s390x sqlite-libs-3.42.0-6.fc39.s390x systemd-libs-254~rc2-4.fc39.s390x tar-2:1.34-8.fc39.s390x tzdata-2023c-1.fc39.noarch unzip-6.0-60.fc38.s390x util-linux-2.39.1-2.fc39.s390x util-linux-core-2.39.1-2.fc39.s390x which-2.21-39.fc39.s390x xxhash-libs-0.8.1-5.fc39.s390x xz-5.4.3-1.fc39.s390x xz-libs-5.4.3-1.fc39.s390x zip-3.0-36.fc38.s390x zlib-1.2.13-3.fc38.s390x zstd-1.5.5-1.fc39.s390x Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: gmp-6.2.1-4.fc38.s390x libzstd-1.5.5-1.fc39.s390x libeconf-0.4.0-5.fc38.s390x dwz-0.15-2.fc38.s390x libtasn1-4.19.0-2.fc38.s390x xz-libs-5.4.3-1.fc39.s390x libbrotli-1.0.9-12.fc39.s390x grep-3.11-1.fc39.s390x qt5-srpm-macros-5.15.10-1.fc39.noarch coreutils-common-9.3-1.fc39.s390x libcom_err-1.47.0-1.fc39.s390x libmount-2.39.1-2.fc39.s390x pyproject-srpm-macros-1.9.0-1.fc39.noarch pcre2-10.42-1.fc38.1.s390x elfutils-libs-0.189-3.fc39.s390x rpm-sequoia-1.4.1-1.fc39.s390x openblas-srpm-macros-2-13.fc38.noarch lua-srpm-macros-1-8.fc38.noarch sed-4.8-12.fc38.s390x libnghttp2-1.55.1-1.fc39.s390x gawk-5.2.2-1.fc39.s390x pkgconf-1.9.5-1.fc39.s390x fpc-srpm-macros-1.3-7.fc38.noarch info-7.0.3-2.fc39.s390x zlib-1.2.13-3.fc38.s390x fedora-gpg-keys-39-0.3.noarch libgcc-13.1.1-4.fc39.s390x rpm-build-4.18.91-7.fc39.s390x ghc-srpm-macros-1.6.1-1.fc38.noarch file-libs-5.44-4.fc39.s390x libxcrypt-4.4.36-1.fc39.s390x gzip-1.12-3.fc38.s390x file-5.44-4.fc39.s390x binutils-gold-2.40-9.fc39.s390x libsemanage-3.5-3.fc39.s390x libstdc++-13.1.1-4.fc39.s390x libverto-0.3.2-5.fc38.s390x fonts-srpm-macros-2.0.5-11.fc38.noarch glibc-common-2.37.9000-17.fc39.s390x pam-libs-1.5.3-1.fc39.s390x krb5-libs-1.21-2.fc39.s390x libssh-0.10.5-1.fc39.s390x libattr-2.5.1-7.fc39.s390x libfdisk-2.39.1-2.fc39.s390x libdb-5.3.28-55.fc38.s390x libnsl2-2.0.0-5.fc38.s390x openssl-libs-3.0.8-2.fc39.s390x binutils-2.40-9.fc39.s390x findutils-4.9.0-4.fc39.s390x libcurl-8.2.0-1.fc39.s390x libuuid-2.39.1-2.fc39.s390x openldap-2.6.4-3.fc39.s390x crypto-policies-20230614-1.git5f3458e.fc39.noarch ncurses-libs-6.4-5.20230520.fc39.s390x sqlite-libs-3.42.0-6.fc39.s390x libunistring1.0-1.0-1.fc38.s390x rpmautospec-rpm-macros-0.3.5-3.fc39.noarch mpfr-4.2.0-2.fc39.s390x jansson-2.13.1-6.fc38.s390x ansible-srpm-macros-1-10.fc39.noarch libssh-config-0.10.5-1.fc39.noarch authselect-libs-1.4.2-2.fc38.s390x bzip2-1.0.8-16.fc39.s390x bash-5.2.15-3.fc38.s390x fedora-release-39-0.21.noarch pkgconf-m4-1.9.5-1.fc39.noarch diffutils-3.10-2.fc39.s390x publicsuffix-list-dafsa-20230614-1.fc39.noarch cyrus-sasl-lib-2.1.28-10.fc39.s390x curl-8.2.0-1.fc39.s390x libgomp-13.1.1-4.fc39.s390x xz-5.4.3-1.fc39.s390x setup-2.14.3-3.fc39.noarch libsigsegv-2.14-4.fc38.s390x ca-certificates-2023.2.60-2.fc38.noarch which-2.21-39.fc39.s390x zip-3.0-36.fc38.s390x ed-1.19-2.fc38.s390x libacl-2.3.1-7.fc39.s390x libunistring-1.1-3.fc38.s390x alternatives-1.24-1.fc39.s390x coreutils-9.3-1.fc39.s390x libselinux-3.5-4.fc39.s390x efi-srpm-macros-5-8.fc39.noarch shadow-utils-4.13-7.fc39.s390x libffi-3.4.4-3.fc39.s390x util-linux-core-2.39.1-2.fc39.s390x glibc-minimal-langpack-2.37.9000-17.fc39.s390x ocaml-srpm-macros-8-1.fc39.noarch xxhash-libs-0.8.1-5.fc39.s390x ncurses-base-6.4-5.20230520.fc39.noarch elfutils-debuginfod-client-0.189-3.fc39.s390x zstd-1.5.5-1.fc39.s390x elfutils-libelf-0.189-3.fc39.s390x keyutils-libs-1.6.1-6.fc38.s390x filesystem-3.18-4.fc39.s390x pkgconf-pkg-config-1.9.5-1.fc39.s390x rust-srpm-macros-24-2.fc39.noarch fedora-repos-rawhide-39-0.3.noarch bzip2-libs-1.0.8-16.fc39.s390x rpm-4.18.91-7.fc39.s390x libsmartcols-2.39.1-2.fc39.s390x libpwquality-1.4.5-5.fc39.s390x pam-1.5.3-1.fc39.s390x fedora-repos-39-0.3.noarch unzip-6.0-60.fc38.s390x gnat-srpm-macros-6-2.fc38.noarch elfutils-default-yama-scope-0.189-3.fc39.noarch p11-kit-0.24.1-6.fc38.s390x glibc-gconv-extra-2.37.9000-17.fc39.s390x elfutils-0.189-3.fc39.s390x libpkgconf-1.9.5-1.fc39.s390x libcap-2.48-6.fc38.s390x perl-srpm-macros-1-50.fc39.noarch tar-1.34-8.fc39.s390x tzdata-2023c-1.fc39.noarch python-srpm-macros-3.12-1.fc39.noarch libidn2-2.3.4-2.fc38.s390x libutempter-1.2.1-9.fc39.s390x gdbm-libs-1.23-3.fc38.s390x gdb-minimal-13.2-5.fc39.s390x rpm-libs-4.18.91-7.fc39.s390x cpio-2.14-2.fc39.s390x libxml2-2.10.4-2.fc39.s390x libblkid-2.39.1-2.fc39.s390x kernel-srpm-macros-1.0-19.fc39.noarch audit-libs-3.1.1-3.fc39.s390x libsepol-3.5-1.fc39.s390x redhat-rpm-config-261-1.fc39.noarch libevent-2.1.12-8.fc38.s390x fedora-release-common-39-0.21.noarch fedora-release-identity-basic-39-0.21.noarch patch-2.7.6-21.fc39.s390x p11-kit-trust-0.24.1-6.fc38.s390x libcap-ng-0.8.3-6.fc39.s390x systemd-libs-254~rc2-4.fc39.s390x debugedit-5.0-9.fc39.s390x lz4-libs-1.9.4-3.fc39.s390x util-linux-2.39.1-2.fc39.s390x lua-libs-5.4.4-9.fc39.s390x authselect-1.4.2-2.fc38.s390x libpsl-0.21.2-3.fc39.s390x popt-1.19-2.fc38.s390x rpm-build-libs-4.18.91-7.fc39.s390x cracklib-2.9.11-1.fc39.s390x qt6-srpm-macros-6.5.1-1.fc39.noarch glibc-2.37.9000-17.fc39.s390x libarchive-3.6.1-5.fc39.s390x readline-8.2-3.fc38.s390x basesystem-11-17.fc39.noarch go-srpm-macros-3.2.0-3.fc39.noarch package-notes-srpm-macros-0.5-8.fc39.noarch libtirpc-1.3.3-1.rc1.fc39.s390x pcre2-syntax-10.42-1.fc38.1.noarch Start: buildsrpm Start: rpmbuild -bs warning: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1689984000 Wrote: /builddir/build/SRPMS/smoldyn-2.67.3-6.fc39.src.rpm RPM build warnings: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-s390x-1689992826.447392/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-s390x-1689992826.447392/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-s390x-1689992826.447392/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-hqsezvbr/smoldyn/smoldyn.spec) Config(child) 3 minutes 14 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/smoldyn-2.67.3-6.fc39.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1689992826.447392 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 4.1 starting (python version = 3.11.3, NVR = mock-4.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/smoldyn-2.67.3-6.fc39.src.rpm) Config(fedora-rawhide-s390x) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1689992826.447392/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1689992826.447392/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (fallback) Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1689992826.447392/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (direct choice) Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 2.9 kB/s | 2.2 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 4.3 kB/s | 3.8 kB 00:00 fedora 4.7 kB/s | 4.4 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for smoldyn-2.67.3-6.fc39.src.rpm Start: build setup for smoldyn-2.67.3-6.fc39.src.rpm warning: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1689984000 Wrote: /builddir/build/SRPMS/smoldyn-2.67.3-6.fc39.src.rpm RPM build warnings: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 2.9 kB/s | 2.2 kB 00:00 Additional repo http_kojipkgs_fedoraproject_org 4.4 kB/s | 3.8 kB 00:00 fedora 8.4 kB/s | 4.4 kB 00:00 Dependencies resolved. ===================================================================================================================================== Package Arch Version Repository Size 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python3-pillow-tk-10.0.0-1.fc39.s390 85 kB/s | 29 kB 00:00 (224/243): python3-pyparsing-3.0.9-10.fc39.noar 714 kB/s | 246 kB 00:00 (225/243): python3-rpm-generators-14-6.fc39.noa 86 kB/s | 30 kB 00:00 (226/243): python3-rpm-macros-3.12-1.fc39.noarc 42 kB/s | 15 kB 00:00 (227/243): python3-six-1.16.0-11.fc39.noarch.rp 118 kB/s | 41 kB 00:00 (228/243): python3-setuptools-67.7.2-5.fc39.noa 2.0 MB/s | 1.4 MB 00:00 (229/243): python3-wheel-0.40.0-3.fc39.noarch.r 421 kB/s | 146 kB 00:00 (230/243): python3-tkinter-3.12.0~b4-1.fc39.s39 556 kB/s | 383 kB 00:00 (231/243): rhash-1.4.3-2.fc38.s390x.rpm 571 kB/s | 200 kB 00:00 (232/243): python3-scipy-1.10.1-5.fc39.s390x.rp 13 MB/s | 21 MB 00:01 (233/243): tcl-8.6.12-4.fc39.s390x.rpm 2.1 MB/s | 1.1 MB 00:00 (234/243): vim-filesystem-9.0.1677-2.fc39.noarc 53 kB/s | 18 kB 00:00 (235/243): tk-8.6.12-4.fc38.s390x.rpm 3.1 MB/s | 1.6 MB 00:00 (236/243): xkbcomp-1.4.6-5.fc38.s390x.rpm 194 kB/s | 101 kB 00:00 (237/243): xkeyboard-config-2.39-1.fc39.noarch. 2.5 MB/s | 907 kB 00:00 (238/243): xml-common-0.6.3-60.fc38.noarch.rpm 90 kB/s | 31 kB 00:00 (239/243): xorg-x11-proto-devel-2023.2-1.fc39.n 760 kB/s | 262 kB 00:00 (240/243): xorg-x11-server-Xvfb-1.20.14-23.fc39 2.6 MB/s | 964 kB 00:00 (241/243): xorg-x11-server-common-1.20.14-23.fc 101 kB/s | 35 kB 00:00 (242/243): xorg-x11-xauth-1.1.2-3.fc38.s390x.rp 103 kB/s | 36 kB 00:00 (243/243): zlib-devel-1.2.13-3.fc38.s390x.rpm 129 kB/s | 45 kB 00:00 -------------------------------------------------------------------------------- Total 5.3 MB/s | 193 MB 00:36 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. 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libxslt-1.1.38-2.fc39.s390x 135/243 Verifying : make-1:4.4.1-1.fc39.s390x 136/243 Verifying : mesa-libEGL-23.1.3-1.fc39.s390x 137/243 Verifying : mesa-libGL-23.1.3-1.fc39.s390x 138/243 Verifying : mesa-libGL-devel-23.1.3-1.fc39.s390x 139/243 Verifying : mesa-libGLU-9.0.1-8.fc38.s390x 140/243 Verifying : mesa-libGLU-devel-9.0.1-8.fc38.s390x 141/243 Verifying : mesa-libgbm-23.1.3-1.fc39.s390x 142/243 Verifying : mesa-libglapi-23.1.3-1.fc39.s390x 143/243 Verifying : mpdecimal-2.5.1-6.fc38.s390x 144/243 Verifying : ncurses-6.4-5.20230520.fc39.s390x 145/243 Verifying : nettle-3.9.1-1.fc39.s390x 146/243 Verifying : openblas-0.3.21-4.fc38.s390x 147/243 Verifying : openblas-openmp-0.3.21-4.fc38.s390x 148/243 Verifying : openjpeg2-2.5.0-3.fc38.s390x 149/243 Verifying : perl-Carp-1.54-499.fc39.noarch 150/243 Verifying : perl-Class-Struct-0.68-499.fc39.noarch 151/243 Verifying : perl-DynaLoader-1.54-499.fc39.s390x 152/243 Verifying : perl-Encode-4:3.19-499.fc39.s390x 153/243 Verifying : 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python3-pyparsing-3.0.9-10.fc39.noarch 224/243 Verifying : python3-rpm-generators-14-6.fc39.noarch 225/243 Verifying : python3-rpm-macros-3.12-1.fc39.noarch 226/243 Verifying : python3-scipy-1.10.1-5.fc39.s390x 227/243 Verifying : python3-setuptools-67.7.2-5.fc39.noarch 228/243 Verifying : python3-six-1.16.0-11.fc39.noarch 229/243 Verifying : python3-tkinter-3.12.0~b4-1.fc39.s390x 230/243 Verifying : python3-wheel-1:0.40.0-3.fc39.noarch 231/243 Verifying : rhash-1.4.3-2.fc38.s390x 232/243 Verifying : tcl-1:8.6.12-4.fc39.s390x 233/243 Verifying : tk-1:8.6.12-4.fc38.s390x 234/243 Verifying : vim-filesystem-2:9.0.1677-2.fc39.noarch 235/243 Verifying : xkbcomp-1.4.6-5.fc38.s390x 236/243 Verifying : xkeyboard-config-2.39-1.fc39.noarch 237/243 Verifying : xml-common-0.6.3-60.fc38.noarch 238/243 Verifying : xorg-x11-proto-devel-2023.2-1.fc39.noarch 239/243 Verifying : xorg-x11-server-Xvfb-1.20.14-23.fc39.s390x 240/243 Verifying : xorg-x11-server-common-1.20.14-23.fc39.s390x 241/243 Verifying : xorg-x11-xauth-1:1.1.2-3.fc38.s390x 242/243 Verifying : zlib-devel-1.2.13-3.fc38.s390x 243/243 Installed: abattis-cantarell-vf-fonts-0.301-9.fc38.noarch annobin-docs-12.21-1.fc39.noarch annobin-plugin-gcc-12.21-1.fc39.s390x boost-1.81.0-5.fc39.s390x boost-atomic-1.81.0-5.fc39.s390x boost-chrono-1.81.0-5.fc39.s390x boost-container-1.81.0-5.fc39.s390x boost-context-1.81.0-5.fc39.s390x boost-contract-1.81.0-5.fc39.s390x boost-coroutine-1.81.0-5.fc39.s390x boost-date-time-1.81.0-5.fc39.s390x boost-devel-1.81.0-5.fc39.s390x boost-fiber-1.81.0-5.fc39.s390x boost-filesystem-1.81.0-5.fc39.s390x boost-graph-1.81.0-5.fc39.s390x boost-iostreams-1.81.0-5.fc39.s390x boost-json-1.81.0-5.fc39.s390x boost-locale-1.81.0-5.fc39.s390x boost-log-1.81.0-5.fc39.s390x boost-math-1.81.0-5.fc39.s390x boost-nowide-1.81.0-5.fc39.s390x boost-numpy3-1.81.0-5.fc39.s390x boost-program-options-1.81.0-5.fc39.s390x boost-python3-1.81.0-5.fc39.s390x boost-random-1.81.0-5.fc39.s390x boost-regex-1.81.0-5.fc39.s390x boost-serialization-1.81.0-5.fc39.s390x boost-stacktrace-1.81.0-5.fc39.s390x boost-system-1.81.0-5.fc39.s390x boost-test-1.81.0-5.fc39.s390x boost-thread-1.81.0-5.fc39.s390x boost-timer-1.81.0-5.fc39.s390x boost-type_erasure-1.81.0-5.fc39.s390x boost-wave-1.81.0-5.fc39.s390x cairo-1.17.8-4.fc39.s390x cmake-3.27.0-1.fc39.s390x cmake-data-3.27.0-1.fc39.noarch cmake-filesystem-3.27.0-1.fc39.s390x cmake-rpm-macros-3.27.0-1.fc39.noarch cpp-13.1.1-4.fc39.s390x default-fonts-core-sans-4.0-4.fc39.noarch dejavu-sans-fonts-2.37-20.fc38.noarch emacs-filesystem-1:28.2-6.fc39.noarch expat-2.5.0-2.fc38.s390x flexiblas-3.3.1-3.fc39.s390x flexiblas-netlib-3.3.1-3.fc39.s390x flexiblas-openblas-openmp-3.3.1-3.fc39.s390x fontconfig-2.14.2-3.fc39.s390x fonts-filesystem-1:2.0.5-11.fc38.noarch freeglut-3.4.0-3.fc39.s390x freeglut-devel-3.4.0-3.fc39.s390x freetype-2.13.1-1.fc39.s390x fribidi-1.0.13-1.fc39.s390x gc-8.2.2-3.fc38.s390x gcc-13.1.1-4.fc39.s390x gcc-c++-13.1.1-4.fc39.s390x gcc-plugin-annobin-13.1.1-4.fc39.s390x gl-manpages-1.1-28.20190306.fc39.noarch glib2-2.77.0-7.fc39.s390x glibc-devel-2.37.9000-17.fc39.s390x glibc-headers-s390-2.37.9000-17.fc39.noarch gnutls-3.8.0-6.fc39.s390x google-noto-fonts-common-20230601-3.fc39.noarch google-noto-sans-vf-fonts-20230601-3.fc39.noarch graphite2-1.3.14-12.fc39.s390x groff-base-1.23.0-1.fc39.s390x guile22-2.2.7-8.fc39.s390x harfbuzz-8.0.1-2.fc39.s390x jbigkit-libs-2.1-25.fc38.s390x jsoncpp-1.9.5-4.fc38.s390x kernel-headers-6.5.0-0.rc2.git0.1.fc39.s390x lcms2-2.15-1.fc39.s390x libICE-1.0.10-10.fc38.s390x libICE-devel-1.0.10-10.fc38.s390x libSM-1.2.3-12.fc38.s390x libSM-devel-1.2.3-12.fc38.s390x libX11-1.8.6-1.fc39.s390x libX11-common-1.8.6-1.fc39.noarch libX11-devel-1.8.6-1.fc39.s390x libX11-xcb-1.8.6-1.fc39.s390x libXau-1.0.11-2.fc38.s390x libXau-devel-1.0.11-2.fc38.s390x libXdmcp-1.1.3-10.fc38.s390x libXext-1.3.5-2.fc38.s390x libXext-devel-1.3.5-2.fc38.s390x libXfixes-6.0.0-5.fc38.s390x libXfixes-devel-6.0.0-5.fc38.s390x libXfont2-2.0.3-14.fc38.s390x libXft-2.3.8-2.fc39.s390x libXi-1.8.1-1.fc39.s390x libXi-devel-1.8.1-1.fc39.s390x libXmu-1.1.4-2.fc38.s390x libXmu-devel-1.1.4-2.fc38.s390x libXrender-0.9.11-2.fc38.s390x libXt-1.2.1-4.fc38.s390x libXt-devel-1.2.1-4.fc38.s390x libXxf86vm-1.1.5-2.fc38.s390x libasan-13.1.1-4.fc39.s390x libatomic-13.1.1-4.fc39.s390x libb2-0.98.1-8.fc38.s390x libdrm-2.4.114-2.fc38.s390x libdrm-devel-2.4.114-2.fc38.s390x libfontenc-1.1.6-2.fc38.s390x libgfortran-13.1.1-4.fc39.s390x libglvnd-1:1.6.0-2.fc38.s390x libglvnd-core-devel-1:1.6.0-2.fc38.s390x libglvnd-devel-1:1.6.0-2.fc38.s390x libglvnd-egl-1:1.6.0-2.fc38.s390x libglvnd-gles-1:1.6.0-2.fc38.s390x libglvnd-glx-1:1.6.0-2.fc38.s390x libglvnd-opengl-1:1.6.0-2.fc38.s390x libicu-73.2-1.fc39.s390x libicu-devel-73.2-1.fc39.s390x libimagequant-4.0.1-4.fc39.s390x libjpeg-turbo-2.1.4-2.fc38.s390x libmpc-1.3.1-2.fc38.s390x libpng-2:1.6.37-14.fc38.s390x libqhull_r-1:7.2.1-12.fc38.s390x libraqm-0.8.0-4.fc38.s390x libstdc++-devel-13.1.1-4.fc39.s390x libtiff-4.4.0-5.fc38.s390x libtiff-devel-4.4.0-5.fc38.s390x libtool-ltdl-2.4.7-6.fc38.s390x libubsan-13.1.1-4.fc39.s390x libuv-1:1.46.0-1.fc39.s390x libwayland-client-1.22.0-1.fc39.s390x libwayland-server-1.22.0-1.fc39.s390x libwebp-1.3.1-1.fc39.s390x libxcb-1.13.1-11.fc38.s390x libxcb-devel-1.13.1-11.fc38.s390x libxcrypt-devel-4.4.36-1.fc39.s390x libxkbfile-1.1.1-2.fc38.s390x libxshmfence-1.3-12.fc38.s390x libxslt-1.1.38-2.fc39.s390x make-1:4.4.1-1.fc39.s390x mesa-libEGL-23.1.3-1.fc39.s390x mesa-libGL-23.1.3-1.fc39.s390x mesa-libGL-devel-23.1.3-1.fc39.s390x mesa-libGLU-9.0.1-8.fc38.s390x mesa-libGLU-devel-9.0.1-8.fc38.s390x mesa-libgbm-23.1.3-1.fc39.s390x mesa-libglapi-23.1.3-1.fc39.s390x mpdecimal-2.5.1-6.fc38.s390x ncurses-6.4-5.20230520.fc39.s390x nettle-3.9.1-1.fc39.s390x openblas-0.3.21-4.fc38.s390x openblas-openmp-0.3.21-4.fc38.s390x openjpeg2-2.5.0-3.fc38.s390x perl-Carp-1.54-499.fc39.noarch perl-Class-Struct-0.68-499.fc39.noarch perl-DynaLoader-1.54-499.fc39.s390x perl-Encode-4:3.19-499.fc39.s390x perl-Errno-1.37-499.fc39.s390x perl-Exporter-5.77-499.fc39.noarch perl-Fcntl-1.15-499.fc39.s390x perl-File-Basename-2.86-499.fc39.noarch perl-File-Path-2.18-499.fc39.noarch perl-File-Temp-1:0.231.100-499.fc39.noarch perl-File-stat-1.13-499.fc39.noarch perl-Getopt-Long-1:2.54-499.fc39.noarch perl-Getopt-Std-1.13-499.fc39.noarch perl-HTTP-Tiny-0.088-1.fc39.noarch perl-IO-1.52-499.fc39.s390x perl-IPC-Open3-1.22-499.fc39.noarch perl-MIME-Base64-3.16-499.fc39.s390x perl-POSIX-2.13-499.fc39.s390x perl-PathTools-3.89-499.fc39.s390x perl-Pod-Escapes-1:1.07-499.fc39.noarch perl-Pod-Perldoc-3.28.01-500.fc39.noarch perl-Pod-Simple-1:3.45-3.fc39.noarch perl-Pod-Usage-4:2.03-499.fc39.noarch perl-Scalar-List-Utils-5:1.63-499.fc39.s390x perl-SelectSaver-1.02-499.fc39.noarch perl-Socket-4:2.037-2.fc39.s390x perl-Storable-1:3.32-499.fc39.s390x perl-Symbol-1.09-499.fc39.noarch perl-Term-ANSIColor-5.01-500.fc39.noarch perl-Term-Cap-1.18-499.fc39.noarch perl-Text-ParseWords-3.31-499.fc39.noarch perl-Text-Tabs+Wrap-2023.0511-2.fc39.noarch perl-Time-Local-2:1.350-2.fc39.noarch perl-constant-1.33-500.fc39.noarch perl-if-0.61.000-499.fc39.noarch perl-interpreter-4:5.38.0-499.fc39.s390x perl-libs-4:5.38.0-499.fc39.s390x perl-locale-1.10-499.fc39.noarch perl-macros-4:5.38.0-499.fc39.noarch perl-mro-1.28-499.fc39.s390x perl-overload-1.37-499.fc39.noarch perl-overloading-0.02-499.fc39.noarch perl-parent-1:0.241-499.fc39.noarch perl-podlators-1:5.01-499.fc39.noarch perl-vars-1.05-499.fc39.noarch pixman-0.42.2-1.fc39.s390x pybind11-devel-2.10.4-3.fc39.s390x pyproject-rpm-macros-1.9.0-1.fc39.noarch python-pip-wheel-23.1.2-2.fc39.noarch python-rpm-macros-3.12-1.fc39.noarch python3-3.12.0~b4-1.fc39.s390x python3-appdirs-1.4.4-10.fc39.noarch python3-brotli-1.0.9-12.fc39.s390x python3-cairo-1.24.0-1.fc39.s390x python3-contourpy-1.1.0-1.fc39.s390x python3-cycler-0.11.0-8.fc39.noarch python3-dateutil-1:2.8.2-9.fc39.noarch python3-devel-3.12.0~b4-1.fc39.s390x python3-flaky-3.7.0-11.fc39.noarch python3-fonttools-4.41.0-1.fc39.s390x python3-fs-2.4.16-3.fc39.noarch python3-kiwisolver-1.4.4-8.fc39.s390x python3-libs-3.12.0~b4-1.fc39.s390x python3-lxml-4.9.2-8.fc39.s390x python3-matplotlib-3.7.2-1.fc39.s390x python3-matplotlib-data-3.7.2-1.fc39.noarch python3-matplotlib-data-fonts-3.7.2-1.fc39.noarch python3-matplotlib-tk-3.7.2-1.fc39.s390x python3-munkres-1.1.2-15.fc39.noarch python3-numpy-1:1.24.4-1.fc39.s390x python3-numpy-f2py-1:1.24.4-1.fc39.s390x python3-olefile-0.46-20.fc39.noarch python3-packaging-23.1-3.fc39.noarch python3-pillow-10.0.0-1.fc39.s390x python3-pillow-tk-10.0.0-1.fc39.s390x python3-pyparsing-3.0.9-10.fc39.noarch python3-rpm-generators-14-6.fc39.noarch python3-rpm-macros-3.12-1.fc39.noarch python3-scipy-1.10.1-5.fc39.s390x python3-setuptools-67.7.2-5.fc39.noarch python3-six-1.16.0-11.fc39.noarch python3-tkinter-3.12.0~b4-1.fc39.s390x python3-wheel-1:0.40.0-3.fc39.noarch rhash-1.4.3-2.fc38.s390x tcl-1:8.6.12-4.fc39.s390x tk-1:8.6.12-4.fc38.s390x vim-filesystem-2:9.0.1677-2.fc39.noarch xkbcomp-1.4.6-5.fc38.s390x xkeyboard-config-2.39-1.fc39.noarch xml-common-0.6.3-60.fc38.noarch xorg-x11-proto-devel-2023.2-1.fc39.noarch xorg-x11-server-Xvfb-1.20.14-23.fc39.s390x xorg-x11-server-common-1.20.14-23.fc39.s390x xorg-x11-xauth-1:1.1.2-3.fc38.s390x zlib-devel-1.2.13-3.fc38.s390x Complete! Finish: build setup for smoldyn-2.67.3-6.fc39.src.rpm Start: rpmbuild smoldyn-2.67.3-6.fc39.src.rpm warning: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1689984000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.4mu3fD + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf Smoldyn-2.67.3 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Smoldyn-2.67.3.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd Smoldyn-2.67.3 + /usr/bin/mkdir -p SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (smoldyn-fix_libpaths.patch):' Patch #0 (smoldyn-fix_libpaths.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .fix_libpaths --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 253 (offset 44 lines). Hunk #2 succeeded at 269 (offset 44 lines). Hunk #3 succeeded at 433 (offset 44 lines). Hunk #4 succeeded at 510 (offset 47 lines). Patch #1 (smoldyn-freeglut.patch): + echo 'Patch #1 (smoldyn-freeglut.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .freeglut --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 365 (offset 39 lines). Patch #2 (smoldyn-create_soname.patch): + echo 'Patch #2 (smoldyn-create_soname.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .create_soname --fuzz=0 patching file CMakeLists.txt Hunk #2 succeeded at 517 (offset 47 lines). Patch #3 (smoldyn-avoid_automatic_wheel.patch): + echo 'Patch #3 (smoldyn-avoid_automatic_wheel.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .avoid_automatic_wheel --fuzz=0 patching file source/python/CMakeLists.txt Hunk #1 succeeded at 20 (offset -3 lines). Patch #4 (smoldyn-bug121.patch): + echo 'Patch #4 (smoldyn-bug121.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .bug121 --fuzz=0 patching file tests/test_api.py Patch #5 (smoldyn-bug123.patch): + echo 'Patch #5 (smoldyn-bug123.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .bug123 --fuzz=0 patching file tests/test_api.py + rm -rf source/MSVClibs + rm -rf source/pybind11 + rm -rf source/BioNetGen source/MinGWlibs Toolchain-mingw32.cmake + rm -rf source/vcell/SimpleMesh.cpp source/vcell/SimpleMesh.h source/vcell/SimpleValueProvider.cpp source/vcell/SimpleValueProvider.h source/vcell/zconf.h source/vcell/zlib.h source/vcell/zlib.lib source/NextSubVolume/Eigen + rm -rf source/NextSubVolume/boost_include + rm -f 'source/vtk/*' + find . -type f -name '*.h' -exec chmod 0644 '{}' ';' + find . -type f -name '*.c' -exec chmod 0644 '{}' ';' + find . -type f -name '*.pdf' -exec chmod 0644 '{}' ';' + find . -type f -name '*.txt' -exec chmod 0644 '{}' ';' + find . -type f -name '*.txt' -exec sed -i 's/\r$//' '{}' ';' + sed -e 's|../../../source/BioNetGen/BNG2.pl|/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl|g' -i examples/S95_regression/lrmsim.txt examples/S12_bionetgen/lrm/lrmsim.txt examples/S12_bionetgen/abba/abbasim.txt examples/S94_archive/Andrews_2016/BioNetGen/lrm/lrmsim.txt examples/S94_archive/Andrews_2016/BioNetGen/abba/abbasim.txt + cp -p source/libSteve/SFMT/LICENSE.txt source/libSteve/SFMT/SFMT-LICENSE.txt + cp -p source/libSteve/SFMT/README.txt source/libSteve/SFMT/SFMT-README.txt + find -name '*.pyc' -delete + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.Ci3HHR + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.67.3 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -B build -DCPACK_BINARY_STGZ:BOOL=OFF -DCPACK_BINARY_TGZ:BOOL=OFF -DCPACK_BINARY_TZ:BOOL=OFF -DCPACK_SOURCE_TBZ2:BOOL=OFF -DCPACK_SOURCE_TGZ:BOOL=OFF -DCPACK_SOURCE_TXZ:BOOL=OFF -DCPACK_SOURCE_TZ:BOOL=OFF -DOPTION_VCELL:BOOL=OFF -DOPTION_VTK:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=ON -DSMOLDYN_VERSION:STRING=2.67.3 -DSMOLDYN_VERSION_MAJOR:STRING=2 -DOPTION_TARGET_LIBSMOLDYN:BOOL=ON -DOPTION_STATIC:BOOL=OFF -DOPTION_PYTHON:BOOL=ON -DPYBIND11_FINDPYTHON:BOOL=ON -Dpybind11_DIR:PATH=/usr/share/cmake/pybind11 -DOPTION_USE_ZLIB:BOOL=ON -DOPTION_PDE:BOOL=ON -DPERL_VENDORLIB:PATH=/usr/share/perl5/vendor_perl -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=YES -DHAVE_GL_FREEGLUT_H=TRUE -DOPTION_EXAMPLES:BOOL=OFF -DOPTION_DOCS:BOOL=OFF -- The CXX compiler identification is GNU 13.1.1 -- The C compiler identification is GNU 13.1.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Smoldyn version is set to: '2.67.3' -- Compiling for Smoldyn: ON -- Compiling for Libsmoldyn: ON -- Option to compile Smoldyn for VCell: OFF -- Option to cross-compile for Windows using MinGW: OFF -- Option to include NextSubvolume: ON -- Option to include VTK: OFF -- Option to compile with static libraries: OFF -- Option to include OpenGL support: ON -- Option to include LibTiff: ON -- Option to include Zlib: ON -- Option to incude Python module: ON -- Option to run Libsmoldyn examples: OFF -- Option to build documentation: OFF -- Performing Test C_FLAG_EXISTS -- Performing Test C_FLAG_EXISTS - Success -- Performing Test CXX_FLAG_EXISTS -- Performing Test CXX_FLAG_EXISTS - Success -- [COMPILER] Adding -Wno-unused-parameter -- Build type: Release -- Compiling on a Linux computer -- CMAKE_CXX_FLAGS variable: '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection' -- BioNetGen path: '/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl' -- Found OpenGL: /usr/lib64/libOpenGL.so -- OpenGL found: '/usr/include', '/usr/lib64/libGL.so;/usr/lib64/libGLU.so' -- Found GLUT: /usr/lib64/libglut.so -- Found TIFF: /usr/lib64/libtiff.so (found version "4.4.0") -- Found Libtiff: '/usr/include', '/usr/lib64/libtiff.so' -- Found Zlib: '/usr/include', '/usr/lib64/libz.so' -- Boost headers found: '/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include' -- Found Python3: /usr/bin/python3.12 (found version "3.12.0") found components: Interpreter Development Development.Module Development.Embed -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.10.4") -- [TEST] Found 15 test scripts -- Configuring done (1.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/Smoldyn-2.67.3/build + /usr/bin/make -O -j2 V=1 VERBOSE=1 -C build make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -S/builddir/build/BUILD/Smoldyn-2.67.3 -B/builddir/build/BUILD/Smoldyn-2.67.3/build --check-build-system CMakeFiles/Makefile.cmake 0 make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles /builddir/build/BUILD/Smoldyn-2.67.3/build//CMakeFiles/progress.marks make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/depend /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume/CMakeFiles/nsv.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve/CMakeFiles/Steve.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 1%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o -MF CMakeFiles/nsv.dir/StructuredGrid.cpp.o.d -o CMakeFiles/nsv.dir/StructuredGrid.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/StructuredGrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 2%] Building C object source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o -MF CMakeFiles/Steve.dir/Geometry.c.o.d -o CMakeFiles/Steve.dir/Geometry.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Geometry.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 4%] Building C object source/libSteve/CMakeFiles/Steve.dir/List.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/List.c.o -MF CMakeFiles/Steve.dir/List.c.o.d -o CMakeFiles/Steve.dir/List.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/List.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 3%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o -MF CMakeFiles/nsv.dir/Species.cpp.o.d -o CMakeFiles/nsv.dir/Species.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/Species.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 6%] Building C object source/libSteve/CMakeFiles/Steve.dir/math2.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/math2.c.o -MF CMakeFiles/Steve.dir/math2.c.o.d -o CMakeFiles/Steve.dir/math2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/math2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 7%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o -MF CMakeFiles/nsv.dir/ReactionEquation.cpp.o.d -o CMakeFiles/nsv.dir/ReactionEquation.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/ReactionEquation.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 8%] Building C object source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o -MF CMakeFiles/Steve.dir/opengl2.c.o.d -o CMakeFiles/Steve.dir/opengl2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/opengl2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 11%] Building C object source/libSteve/CMakeFiles/Steve.dir/parse.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/parse.c.o -MF CMakeFiles/Steve.dir/parse.c.o.d -o CMakeFiles/Steve.dir/parse.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/parse.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/parse.c: In function 'Parse_ReadLine': /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/parse.c:371:60: warning: comparison is always true due to limited range of data type [-Wtype-limits] 371 | while((ch=fgetc(pfp->fptr))!=EOF && ch!='\n' && ch!='\r'); | ^~ make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 12%] Building C object source/libSteve/CMakeFiles/Steve.dir/queue.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/queue.c.o -MF CMakeFiles/Steve.dir/queue.c.o.d -o CMakeFiles/Steve.dir/queue.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/queue.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 13%] Building C object source/libSteve/CMakeFiles/Steve.dir/random2.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/random2.c.o -MF CMakeFiles/Steve.dir/random2.c.o.d -o CMakeFiles/Steve.dir/random2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 14%] Building C object source/libSteve/CMakeFiles/Steve.dir/Rn.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Rn.c.o -MF CMakeFiles/Steve.dir/Rn.c.o.d -o CMakeFiles/Steve.dir/Rn.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Rn.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 9%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -MF CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o.d -o CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 16%] Building C object source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o -MF CMakeFiles/Steve.dir/RnSort.c.o.d -o CMakeFiles/Steve.dir/RnSort.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/RnSort.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 18%] Building C object source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o -MF CMakeFiles/Steve.dir/rxnparam.c.o.d -o CMakeFiles/Steve.dir/rxnparam.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/rxnparam.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 18%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o -MF CMakeFiles/nsv.dir/Kairos.cpp.o.d -o CMakeFiles/nsv.dir/Kairos.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/Kairos.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 20%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o -MF CMakeFiles/nsv.dir/Io.cpp.o.d -o CMakeFiles/nsv.dir/Io.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/Io.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 22%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o -MF CMakeFiles/nsv.dir/Geometry.cpp.o.d -o CMakeFiles/nsv.dir/Geometry.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/Geometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 19%] Building C object source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 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-Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o -MF CMakeFiles/Steve.dir/Sphere.c.o.d -o CMakeFiles/Steve.dir/Sphere.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Sphere.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 25%] Building C object source/libSteve/CMakeFiles/Steve.dir/string2.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/string2.c.o -MF CMakeFiles/Steve.dir/string2.c.o.d -o CMakeFiles/Steve.dir/string2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/string2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 27%] Building C object source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o -MF CMakeFiles/Steve.dir/SurfaceParam.c.o.d -o CMakeFiles/Steve.dir/SurfaceParam.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SurfaceParam.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 28%] Building C object source/libSteve/CMakeFiles/Steve.dir/Zn.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Zn.c.o -MF CMakeFiles/Steve.dir/Zn.c.o.d -o CMakeFiles/Steve.dir/Zn.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Zn.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Building C object source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o -MF CMakeFiles/Steve.dir/SFMT/SFMT.c.o.d -o CMakeFiles/Steve.dir/SFMT/SFMT.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SFMT/SFMT.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Built target Steve make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 23%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o -MF CMakeFiles/nsv.dir/nsvc.cpp.o.d -o CMakeFiles/nsv.dir/nsvc.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/nsvc.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Built target nsv make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/depend /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_static.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_shared.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/build /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 32%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 30%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 33%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 34%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 35%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 37%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 38%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcomparts.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 39%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcomparts.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 40%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolfilament.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 41%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolfilament.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 43%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolgraphics.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 44%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolgraphics.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 45%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolmolec.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 46%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolmolec.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 48%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolport.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 49%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolport.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 50%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smollattice.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 51%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smollattice.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 53%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolreact.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 54%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolreact.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 55%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolrule.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 56%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolrule.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 58%] Building CXX object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o /usr/bin/g++ -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 59%] Building CXX object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o -c 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsurface.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 62%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolwall.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 64%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve 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CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/libsmoldyn.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 66%] Building CXX object CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG 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CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o source/libSteve/CMakeFiles/Steve.dir/List.c.o source/libSteve/CMakeFiles/Steve.dir/math2.c.o source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/bin/ranlib libsmoldyn_static.a make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 69%] Built target smoldyn_static make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_pysmoldyn.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 70%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 71%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 72%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 74%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcomparts.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 75%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolfilament.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 76%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolgraphics.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 77%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolmolec.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 79%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolport.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 80%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smollattice.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 81%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolreact.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 82%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolrule.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 83%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:15, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp:27: /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::func_' [-Wattributes] 20 | class CallbackFunc | ^~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::target_' [-Wattributes] /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::args_' [-Wattributes] make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 85%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsurface.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 86%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolwall.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 67%] Linking CXX shared library libsmoldyn_shared.so /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn_shared.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libsmoldyn_shared.so.2 -o libsmoldyn_shared.so.2.67.3 CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o source/libSteve/CMakeFiles/Steve.dir/List.c.o source/libSteve/CMakeFiles/Steve.dir/math2.c.o source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so /usr/bin/cmake -E cmake_symlink_library libsmoldyn_shared.so.2.67.3 libsmoldyn_shared.so.2 libsmoldyn_shared.so /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: warning: type 'struct latticestruct' violates the C++ One Definition Rule [-Wodr] 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field 'nsv' 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: type name 'NextSubvolumeMethod' should match type name 'Kairos::NextSubvolumeMethod' 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here 137 | class NextSubvolumeMethod | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^ /usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^ make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 87%] Built target smoldyn_shared make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 88%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -MF CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o.d -o CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 90%] Linking CXX executable smoldyn /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -o smoldyn libsmoldyn_shared.so.2.67.3 /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 90%] Built target smoldyn make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 87%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/libsmoldyn.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:15, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/libsmoldyn.cpp:15: /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::func_' [-Wattributes] 20 | class CallbackFunc | ^~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::target_' [-Wattributes] /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::args_' [-Wattributes] make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 91%] Linking CXX static library lib_pysmoldyn.a cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -P CMakeFiles/_pysmoldyn.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_pysmoldyn.dir/link.txt --verbose=1 /usr/bin/ar qc lib_pysmoldyn.a CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o ../libSteve/CMakeFiles/Steve.dir/Geometry.c.o ../libSteve/CMakeFiles/Steve.dir/List.c.o ../libSteve/CMakeFiles/Steve.dir/math2.c.o ../libSteve/CMakeFiles/Steve.dir/opengl2.c.o ../libSteve/CMakeFiles/Steve.dir/parse.c.o ../libSteve/CMakeFiles/Steve.dir/queue.c.o ../libSteve/CMakeFiles/Steve.dir/random2.c.o ../libSteve/CMakeFiles/Steve.dir/Rn.c.o ../libSteve/CMakeFiles/Steve.dir/RnSort.c.o ../libSteve/CMakeFiles/Steve.dir/rxnparam.c.o ../libSteve/CMakeFiles/Steve.dir/SimCommand.c.o ../libSteve/CMakeFiles/Steve.dir/Sphere.c.o ../libSteve/CMakeFiles/Steve.dir/string2.c.o ../libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o ../libSteve/CMakeFiles/Steve.dir/Zn.c.o ../libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o ../NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/bin/ranlib lib_pysmoldyn.a make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 91%] Built target _pysmoldyn make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_smoldyn.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 92%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -MF CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o.d -o CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/CallbackFunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 93%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o -MF CMakeFiles/_smoldyn.dir/Command.cpp.o.d -o CMakeFiles/_smoldyn.dir/Command.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/Command.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 95%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/Simulation.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/Simulation.cpp.o -MF CMakeFiles/_smoldyn.dir/Simulation.cpp.o.d -o CMakeFiles/_smoldyn.dir/Simulation.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/Simulation.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 96%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/module.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/module.cpp.o -MF CMakeFiles/_smoldyn.dir/module.cpp.o.d -o CMakeFiles/_smoldyn.dir/module.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/module.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 97%] Linking CXX shared module /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-312-s390x-linux-gnu.so cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_smoldyn.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -flto -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-312-s390x-linux-gnu.so CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o CMakeFiles/_smoldyn.dir/Command.cpp.o CMakeFiles/_smoldyn.dir/Simulation.cpp.o CMakeFiles/_smoldyn.dir/module.cpp.o lib_pysmoldyn.a /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/strip /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-312-s390x-linux-gnu.so /builddir/build/BUILD/Smoldyn-2.67.3/source/python/../Smoldyn/smoldyn.h:1044:16: warning: type 'struct simstruct' violates the C++ One Definition Rule [-Wodr] 1044 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:1044:16: note: a different type is defined in another translation unit 1044 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/python/../Smoldyn/smoldyn.h:1104:19: note: the first difference of corresponding definitions is field 'callbacks' 1104 | CallbackFunc* callbacks[MAX_PY_CALLBACK]; // Python callback. | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:1044:16: note: a type with different number of fields is defined in another translation unit 1044 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: warning: type 'struct latticestruct' violates the C++ One Definition Rule [-Wodr] 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field 'nsv' 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: type name 'NextSubvolumeMethod' should match type name 'Kairos::NextSubvolumeMethod' 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here 137 | class NextSubvolumeMethod | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^ /usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^ make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 97%] Built target _smoldyn make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/depend /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/copy_python_tree.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/wheel.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/build /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Copying python source tree to binary directory cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Built target copy_python_tree make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Generating wheel in /builddir/build/BUILD/Smoldyn-2.67.3/build cd /builddir/build/BUILD/Smoldyn-2.67.3/build/py && /usr/bin/python3.12 setup.py bdist_wheel -d /builddir/build/BUILD/Smoldyn-2.67.3/build running bdist_wheel running build running build_py creating build creating build/lib.linux-s390x-cpython-312 creating build/lib.linux-s390x-cpython-312/smoldyn copying smoldyn/__init__.py -> build/lib.linux-s390x-cpython-312/smoldyn copying smoldyn/__main__.py -> build/lib.linux-s390x-cpython-312/smoldyn copying smoldyn/smoldyn.py -> build/lib.linux-s390x-cpython-312/smoldyn copying smoldyn/types.py -> build/lib.linux-s390x-cpython-312/smoldyn copying smoldyn/utils.py -> build/lib.linux-s390x-cpython-312/smoldyn creating build/lib.linux-s390x-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/__init__.py -> build/lib.linux-s390x-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/__main__.py -> build/lib.linux-s390x-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/_version.py -> build/lib.linux-s390x-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/combine.py -> build/lib.linux-s390x-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/data_model.py -> build/lib.linux-s390x-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/utils.py -> build/lib.linux-s390x-cpython-312/smoldyn/biosimulators copying smoldyn/_smoldyn.cpython-312-s390x-linux-gnu.so -> build/lib.linux-s390x-cpython-312/smoldyn running build_ext installing to build/bdist.linux-s390x/wheel running install running install_lib creating build/bdist.linux-s390x creating build/bdist.linux-s390x/wheel creating build/bdist.linux-s390x/wheel/smoldyn copying build/lib.linux-s390x-cpython-312/smoldyn/_smoldyn.cpython-312-s390x-linux-gnu.so -> build/bdist.linux-s390x/wheel/smoldyn creating build/bdist.linux-s390x/wheel/smoldyn/biosimulators copying build/lib.linux-s390x-cpython-312/smoldyn/biosimulators/utils.py -> build/bdist.linux-s390x/wheel/smoldyn/biosimulators copying build/lib.linux-s390x-cpython-312/smoldyn/biosimulators/data_model.py -> build/bdist.linux-s390x/wheel/smoldyn/biosimulators copying build/lib.linux-s390x-cpython-312/smoldyn/biosimulators/combine.py -> build/bdist.linux-s390x/wheel/smoldyn/biosimulators copying build/lib.linux-s390x-cpython-312/smoldyn/biosimulators/_version.py -> build/bdist.linux-s390x/wheel/smoldyn/biosimulators copying build/lib.linux-s390x-cpython-312/smoldyn/biosimulators/__main__.py -> build/bdist.linux-s390x/wheel/smoldyn/biosimulators copying build/lib.linux-s390x-cpython-312/smoldyn/biosimulators/__init__.py -> build/bdist.linux-s390x/wheel/smoldyn/biosimulators copying build/lib.linux-s390x-cpython-312/smoldyn/utils.py -> build/bdist.linux-s390x/wheel/smoldyn copying build/lib.linux-s390x-cpython-312/smoldyn/types.py -> build/bdist.linux-s390x/wheel/smoldyn copying build/lib.linux-s390x-cpython-312/smoldyn/smoldyn.py -> build/bdist.linux-s390x/wheel/smoldyn copying build/lib.linux-s390x-cpython-312/smoldyn/__main__.py -> build/bdist.linux-s390x/wheel/smoldyn copying build/lib.linux-s390x-cpython-312/smoldyn/__init__.py -> build/bdist.linux-s390x/wheel/smoldyn running install_egg_info running egg_info creating smoldyn.egg-info writing smoldyn.egg-info/PKG-INFO writing dependency_links to smoldyn.egg-info/dependency_links.txt writing requirements to smoldyn.egg-info/requires.txt writing top-level names to smoldyn.egg-info/top_level.txt writing manifest file 'smoldyn.egg-info/SOURCES.txt' reading manifest file 'smoldyn.egg-info/SOURCES.txt' writing manifest file 'smoldyn.egg-info/SOURCES.txt' Copying smoldyn.egg-info to build/bdist.linux-s390x/wheel/smoldyn-2.67.3-py3.12.egg-info running install_scripts creating build/bdist.linux-s390x/wheel/smoldyn-2.67.3.dist-info/WHEEL creating '/builddir/build/BUILD/Smoldyn-2.67.3/build/smoldyn-2.67.3-cp312-cp312-linux_s390x.whl' and adding 'build/bdist.linux-s390x/wheel' to it adding 'smoldyn/__init__.py' adding 'smoldyn/__main__.py' adding 'smoldyn/_smoldyn.cpython-312-s390x-linux-gnu.so' adding 'smoldyn/smoldyn.py' adding 'smoldyn/types.py' adding 'smoldyn/utils.py' adding 'smoldyn/biosimulators/__init__.py' adding 'smoldyn/biosimulators/__main__.py' adding 'smoldyn/biosimulators/_version.py' adding 'smoldyn/biosimulators/combine.py' adding 'smoldyn/biosimulators/data_model.py' adding 'smoldyn/biosimulators/utils.py' adding 'smoldyn-2.67.3.dist-info/METADATA' adding 'smoldyn-2.67.3.dist-info/WHEEL' adding 'smoldyn-2.67.3.dist-info/top_level.txt' adding 'smoldyn-2.67.3.dist-info/RECORD' removing build/bdist.linux-s390x/wheel make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer, pypa/build or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Built target wheel make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles 0 make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.bf23EQ + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x '!=' / ']' + rm -rf /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x ++ dirname /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.67.3 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x 'INSTALL=/usr/bin/install -p' -C build make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -S/builddir/build/BUILD/Smoldyn-2.67.3 -B/builddir/build/BUILD/Smoldyn-2.67.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles /builddir/build/BUILD/Smoldyn-2.67.3/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume/CMakeFiles/nsv.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/NextSubVolume/CMakeFiles/nsv.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 9%] Built target nsv /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve/CMakeFiles/Steve.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/libSteve/CMakeFiles/Steve.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Built target Steve /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_static.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'CMakeFiles/smoldyn_static.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 49%] Built target smoldyn_static /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_shared.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'CMakeFiles/smoldyn_shared.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 69%] Built target smoldyn_shared /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'CMakeFiles/smoldyn.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 71%] Built target smoldyn /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_pysmoldyn.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/python/CMakeFiles/_pysmoldyn.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 91%] Built target _pysmoldyn /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_smoldyn.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/python/CMakeFiles/_smoldyn.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 97%] Built target _smoldyn /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/copy_python_tree.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 98%] Copying python source tree to binary directory cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 98%] Built target copy_python_tree /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/wheel.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Generating wheel in /builddir/build/BUILD/Smoldyn-2.67.3/build cd /builddir/build/BUILD/Smoldyn-2.67.3/build/py && /usr/bin/python3.12 setup.py bdist_wheel -d /builddir/build/BUILD/Smoldyn-2.67.3/build running bdist_wheel running build running build_py copying smoldyn/__init__.py -> build/lib.linux-s390x-cpython-312/smoldyn copying smoldyn/__main__.py -> build/lib.linux-s390x-cpython-312/smoldyn copying smoldyn/smoldyn.py -> build/lib.linux-s390x-cpython-312/smoldyn copying smoldyn/types.py -> build/lib.linux-s390x-cpython-312/smoldyn copying smoldyn/utils.py -> build/lib.linux-s390x-cpython-312/smoldyn copying smoldyn/biosimulators/__init__.py -> build/lib.linux-s390x-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/__main__.py -> build/lib.linux-s390x-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/_version.py -> build/lib.linux-s390x-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/combine.py -> build/lib.linux-s390x-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/data_model.py -> build/lib.linux-s390x-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/utils.py -> build/lib.linux-s390x-cpython-312/smoldyn/biosimulators copying smoldyn/_smoldyn.cpython-312-s390x-linux-gnu.so -> build/lib.linux-s390x-cpython-312/smoldyn running build_ext /usr/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer, pypa/build or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() installing to build/bdist.linux-s390x/wheel running install running install_lib creating build/bdist.linux-s390x/wheel creating build/bdist.linux-s390x/wheel/smoldyn copying build/lib.linux-s390x-cpython-312/smoldyn/_smoldyn.cpython-312-s390x-linux-gnu.so -> build/bdist.linux-s390x/wheel/smoldyn copying build/lib.linux-s390x-cpython-312/smoldyn/utils.py -> build/bdist.linux-s390x/wheel/smoldyn copying build/lib.linux-s390x-cpython-312/smoldyn/types.py -> build/bdist.linux-s390x/wheel/smoldyn copying build/lib.linux-s390x-cpython-312/smoldyn/smoldyn.py -> build/bdist.linux-s390x/wheel/smoldyn copying build/lib.linux-s390x-cpython-312/smoldyn/__main__.py -> build/bdist.linux-s390x/wheel/smoldyn copying build/lib.linux-s390x-cpython-312/smoldyn/__init__.py -> build/bdist.linux-s390x/wheel/smoldyn creating build/bdist.linux-s390x/wheel/smoldyn/biosimulators copying build/lib.linux-s390x-cpython-312/smoldyn/biosimulators/utils.py -> build/bdist.linux-s390x/wheel/smoldyn/biosimulators copying build/lib.linux-s390x-cpython-312/smoldyn/biosimulators/data_model.py -> build/bdist.linux-s390x/wheel/smoldyn/biosimulators copying build/lib.linux-s390x-cpython-312/smoldyn/biosimulators/combine.py -> build/bdist.linux-s390x/wheel/smoldyn/biosimulators copying build/lib.linux-s390x-cpython-312/smoldyn/biosimulators/_version.py -> build/bdist.linux-s390x/wheel/smoldyn/biosimulators copying build/lib.linux-s390x-cpython-312/smoldyn/biosimulators/__main__.py -> build/bdist.linux-s390x/wheel/smoldyn/biosimulators copying build/lib.linux-s390x-cpython-312/smoldyn/biosimulators/__init__.py -> build/bdist.linux-s390x/wheel/smoldyn/biosimulators running install_egg_info running egg_info writing smoldyn.egg-info/PKG-INFO writing dependency_links to smoldyn.egg-info/dependency_links.txt writing requirements to smoldyn.egg-info/requires.txt writing top-level names to smoldyn.egg-info/top_level.txt reading manifest file 'smoldyn.egg-info/SOURCES.txt' writing manifest file 'smoldyn.egg-info/SOURCES.txt' Copying smoldyn.egg-info to build/bdist.linux-s390x/wheel/smoldyn-2.67.3-py3.12.egg-info running install_scripts creating build/bdist.linux-s390x/wheel/smoldyn-2.67.3.dist-info/WHEEL creating '/builddir/build/BUILD/Smoldyn-2.67.3/build/smoldyn-2.67.3-cp312-cp312-linux_s390x.whl' and adding 'build/bdist.linux-s390x/wheel' to it adding 'smoldyn/__init__.py' adding 'smoldyn/__main__.py' adding 'smoldyn/_smoldyn.cpython-312-s390x-linux-gnu.so' adding 'smoldyn/smoldyn.py' adding 'smoldyn/types.py' adding 'smoldyn/utils.py' adding 'smoldyn/biosimulators/__init__.py' adding 'smoldyn/biosimulators/__main__.py' adding 'smoldyn/biosimulators/_version.py' adding 'smoldyn/biosimulators/combine.py' adding 'smoldyn/biosimulators/data_model.py' adding 'smoldyn/biosimulators/utils.py' adding 'smoldyn-2.67.3.dist-info/METADATA' adding 'smoldyn-2.67.3.dist-info/WHEEL' adding 'smoldyn-2.67.3.dist-info/top_level.txt' adding 'smoldyn-2.67.3.dist-info/RECORD' removing build/bdist.linux-s390x/wheel make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Built target wheel make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/bin/smoldyn -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/lib64/libsmoldyn_shared.so.2.67.3 -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/lib64/libsmoldyn_shared.so.2 -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/lib64/libsmoldyn_shared.so -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/lib64/libsmoldyn_static.a -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/include/smoldyn/libsmoldyn.h -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/include/smoldyn/smoldyn.h -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/include/smoldyn/smoldynconfigure.h make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' + pushd build/py ~/build/BUILD/Smoldyn-2.67.3/build/py ~/build/BUILD/Smoldyn-2.67.3 + mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/lib64/python3.12/site-packages + cp -a smoldyn smoldyn.egg-info /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/lib64/python3.12/site-packages/ + popd ~/build/BUILD/Smoldyn-2.67.3 + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.67.3-6.fc39 --unique-debug-suffix -2.67.3-6.fc39.s390x --unique-debug-src-base smoldyn-2.67.3-6.fc39.s390x --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/Smoldyn-2.67.3 find-debuginfo: starting Extracting debug info from 2 files DWARF-compressing 2 files sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/smoldyn-2.67.3-6.fc39.s390x 3516 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/lib64/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.ochXWL + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.67.3 + cd build + export LD_LIBRARY_PATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/lib64 + LD_LIBRARY_PATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/lib64 + export PYTHONPATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/lib64/python3.12/site-packages + PYTHONPATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/lib64/python3.12/site-packages + xvfb-run ctest -j1 -VV -R 'test_api|test_sanity|test_biosimulator' --output-on-failure --debug /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:424 Here: 424 /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:709 UpdateCTestConfiguration from :/builddir/build/BUILD/Smoldyn-2.67.3/build/DartConfiguration.tcl /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:436 Here: 436 /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:3036 * Read custom CTest configuration directory: /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:3041 * Check for file: /builddir/build/BUILD/Smoldyn-2.67.3/build/CTestCustom.cmake /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:3061 * Check for file: /builddir/build/BUILD/Smoldyn-2.67.3/build/CTestCustom.ctest /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:709 UpdateCTestConfiguration from :/builddir/build/BUILD/Smoldyn-2.67.3/build/DartConfiguration.tcl /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:408 Test project /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:1783 Constructing a list of tests /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_actions /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_api /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_biosimulators /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_concurrent_simulation /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_connect_func /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_connect_var /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_data_in_array /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_data_outputfile /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_getters /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_issue_118 /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_libsmoldyn /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_multiple_iterations /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_prd_placement /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_sanity /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_sim_from_file /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:1834 Done constructing a list of tests /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:984 Updating test list for fixtures /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:1207 Added 0 tests to meet fixture requirements /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:33 UTC /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:33 UTC /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestMultiProcessHandler.cxx:1414 Checking test dependency graph... /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestMultiProcessHandler.cxx:1443 Checking test dependency graph end /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestMultiProcessHandler.cxx:168 test 2 /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:526 Start 2: test_api /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:687 2: Test command: /usr/bin/python3.12 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_api.py" /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:695 2: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:703 2: Environment variables: /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:708 2: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:708 2: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:33 UTC /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:804 2: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:983 1/3 Test #2: test_api ......................... /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:986 Testing test_api ... /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:256 Passed 0.26 sec /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:33 UTC /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestMultiProcessHandler.cxx:168 test 3 /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:526 Start 3: test_biosimulators /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:687 3: Test command: /usr/bin/python3.12 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_biosimulators.py" /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:695 3: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:703 3: Environment variables: /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:708 3: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:708 3: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:33 UTC /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:804 3: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 3: ssssssssssssssssssssssss /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 3: ---------------------------------------------------------------------- /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 3: Ran 24 tests in 0.000s /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 3: /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 3: OK (skipped=24) /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:983 2/3 Test #3: test_biosimulators ............... /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:986 Testing test_biosimulators ... /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:256 Passed 0.29 sec /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:33 UTC /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestMultiProcessHandler.cxx:168 test 14 /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:526 Start 14: test_sanity /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:687 14: Test command: /usr/bin/python3.12 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_sanity.py" /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:695 14: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:703 14: Environment variables: /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:708 14: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:708 14: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:33 UTC /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:804 14: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 14: Using smoldyn from /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn/__init__.py /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 14: test_newcursim /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 14: /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 14: Testing test_get_err /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 14: (, '') /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:983 3/3 Test #14: test_sanity ...................... /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:986 Testing test_sanity ... /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:256 Passed 0.24 sec /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:33 UTC /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:33 UTC /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:33 UTC /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:447 The following tests passed: /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:452 test_api /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:452 test_biosimulators /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:452 test_sanity /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:613 100% tests passed, 0 tests failed out of 3 /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:629 Total Test time (real) = 0.79 sec + RPM_EC=0 ++ jobs -p + exit 0 Processing files: smoldyn-2.67.3-6.fc39.s390x Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.zoxsTb + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + DOCDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/doc/smoldyn + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/doc/smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/Using-Smoldyn-with-SED-ML-COMBINE-BioSimulators.md /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/doc/smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/README.md /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/doc/smoldyn + RPM_EC=0 ++ jobs -p + exit 0 Provides: bundled(SFMT) = 1.3.3 smoldyn = 2.67.3-6.fc39 smoldyn(s390-64) = 2.67.3-6.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.2)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libsmoldyn_shared.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) rtld(GNU_HASH) Processing files: smoldyn-doc-2.67.3-6.fc39.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.lVFuC8 + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + DOCDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/doc/smoldyn-doc + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/BioNetGen /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/CMakeLists.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/Doxyfile.in /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/README.md /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/SmolCrowd /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/SmolEmulate /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/Smoldyn /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/_static /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/build_doxygen /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/conf.py /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/doxygen /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/examples /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/index.rst /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/libSteve /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/python /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/requirements.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/tikz /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/user /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/wrl2smol /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/doc/smoldyn-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: smoldyn-doc = 2.67.3-6.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: smoldyn-libs-2.67.3-6.fc39.s390x Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.7wvj0K + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + LICENSEDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/licenses/smoldyn-libs + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/licenses/smoldyn-libs + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/License.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/licenses/smoldyn-libs + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/licenses/smoldyn-libs + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/LICENSE /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/licenses/smoldyn-libs + RPM_EC=0 ++ jobs -p + exit 0 Provides: libsmoldyn_shared.so.2()(64bit) smoldyn-libs = 2.67.3-6.fc39 smoldyn-libs(s390-64) = 2.67.3-6.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: glibc >= 2.37.9000-17 libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.2)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) rtld(GNU_HASH) Processing files: smoldyn-libs-devel-2.67.3-6.fc39.s390x Provides: smoldyn-libs-devel = 2.67.3-6.fc39 smoldyn-libs-devel(s390-64) = 2.67.3-6.fc39 smoldyn-libs-static = 0:2.67.3-6.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libsmoldyn_shared.so.2()(64bit) Processing files: python3-smoldyn-2.67.3-6.fc39.s390x Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.mbt0YR + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + LICENSEDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/licenses/python3-smoldyn + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/licenses/python3-smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/License.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/licenses/python3-smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/licenses/python3-smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/LICENSE /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x/usr/share/licenses/python3-smoldyn + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-smoldyn = 2.67.3-6.fc39 python3-smoldyn = 2.67.3-6.fc39 python3-smoldyn(s390-64) = 2.67.3-6.fc39 python3.12-smoldyn = 2.67.3-6.fc39 python3.12dist(smoldyn) = 2.67.3 python3dist(smoldyn) = 2.67.3 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: glibc >= 2.37.9000-17 libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.2)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) python(abi) = 3.12 rtld(GNU_HASH) Obsoletes: python-smoldyn < 2.67.3-6.fc39 Processing files: smoldyn-debugsource-2.67.3-6.fc39.s390x Provides: smoldyn-debugsource = 2.67.3-6.fc39 smoldyn-debugsource(s390-64) = 2.67.3-6.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: smoldyn-debuginfo-2.67.3-6.fc39.s390x Provides: debuginfo(build-id) = f0a701b0c16f854879c9bb0d351e4504920f17fc smoldyn-debuginfo = 2.67.3-6.fc39 smoldyn-debuginfo(s390-64) = 2.67.3-6.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: smoldyn-debugsource(s390-64) = 2.67.3-6.fc39 Processing files: smoldyn-libs-debuginfo-2.67.3-6.fc39.s390x Provides: debuginfo(build-id) = 5a395ede87b504704ade7ded9596a6db0c076e82 libsmoldyn_shared.so.2.67.3-2.67.3-6.fc39.s390x.debug()(64bit) smoldyn-libs-debuginfo = 2.67.3-6.fc39 smoldyn-libs-debuginfo(s390-64) = 2.67.3-6.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: smoldyn-debugsource(s390-64) = 2.67.3-6.fc39 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x Wrote: /builddir/build/RPMS/smoldyn-libs-debuginfo-2.67.3-6.fc39.s390x.rpm Wrote: /builddir/build/RPMS/python3-smoldyn-2.67.3-6.fc39.s390x.rpm Wrote: /builddir/build/RPMS/smoldyn-libs-devel-2.67.3-6.fc39.s390x.rpm Wrote: /builddir/build/RPMS/smoldyn-debugsource-2.67.3-6.fc39.s390x.rpm Wrote: /builddir/build/RPMS/smoldyn-doc-2.67.3-6.fc39.noarch.rpm Wrote: /builddir/build/RPMS/smoldyn-debuginfo-2.67.3-6.fc39.s390x.rpm Wrote: /builddir/build/RPMS/smoldyn-2.67.3-6.fc39.s390x.rpm Wrote: /builddir/build/RPMS/smoldyn-libs-2.67.3-6.fc39.s390x.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.qC8wZG + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + /usr/bin/rm -rf /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.s390x + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.jIZMVW + umask 022 + cd /builddir/build/BUILD + rm -rf Smoldyn-2.67.3 Smoldyn-2.67.3.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) Finish: rpmbuild smoldyn-2.67.3-6.fc39.src.rpm Finish: build phase for smoldyn-2.67.3-6.fc39.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-s390x-1689992826.447392/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-s390x-1689992826.447392/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-s390x-1689992826.447392/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/smoldyn-2.67.3-6.fc39.src.rpm) Config(child) 3 minutes 11 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool