Mock Version: 3.0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/pnetcdf-openmpi.spec'], chrootPath='/var/lib/mock/rhel+epel-8-x86_64-1658493370.075648/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ksd33pdt:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ksd33pdt:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '0058a2c080794b26a361955a13086f5e', '-D', '/var/lib/mock/rhel+epel-8-x86_64-1658493370.075648/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ksd33pdt:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/pnetcdf-openmpi.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/pnetcdf-1.11.1-2.el8.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/pnetcdf-openmpi.spec'], chrootPath='/var/lib/mock/rhel+epel-8-x86_64-1658493370.075648/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ksd33pdt:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=FalseprintOutput=True) Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ksd33pdt:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'dd74a2f4d667442d97ed662b93ec204d', '-D', '/var/lib/mock/rhel+epel-8-x86_64-1658493370.075648/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.ksd33pdt:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/pnetcdf-openmpi.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.j8Lqlq + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf pnetcdf-1.11.1 + /usr/bin/gzip -dc /builddir/build/SOURCES/pnetcdf-1.11.1.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd pnetcdf-1.11.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.HGWgz7 + umask 022 + cd /builddir/build/BUILD + cd pnetcdf-1.11.1 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ LMOD_ALLOW_ROOT_USE=yes ++ '[' -n '' ']' ++ '[' yes '!=' yes ']' ++ '[' -z /usr/share/modulefiles ']' ++ findExec READLINK_CMD /usr/bin/readlink readlink ++ Nm=READLINK_CMD ++ confPath=/usr/bin/readlink ++ execNm=readlink ++ eval READLINK_CMD=/usr/bin/readlink +++ READLINK_CMD=/usr/bin/readlink ++ '[' '!' -x /usr/bin/readlink ']' ++ unset Nm confPath execNm ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec ++ '[' -f /proc/70/exe ']' +++ /usr/bin/readlink /proc/70/exe ++ my_shell=/usr/bin/bash +++ /usr/bin/expr /usr/bin/bash : '-*\(.*\)' ++ my_shell=/usr/bin/bash +++ /usr/bin/basename /usr/bin/bash ++ my_shell=bash ++ case ${my_shell} in ++ '[' -f /usr/share/lmod/lmod/init/bash ']' ++ . /usr/share/lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/share/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT LMOD_ALLOW_ROOT_USE READLINK_CMD + module load mpi/openmpi-x86_64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + export OMPI_MCA_rmaps_base_oversubscribe=1 + OMPI_MCA_rmaps_base_oversubscribe=1 + CFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro ' + export LDFLAGS + ./configure --build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/lib64/openmpi/bin --sbindir=/usr/sbin --sysconfdir=/etc/openmpi-x86_64 --datadir=/usr/share --includedir=/usr/include/openmpi-x86_64 --libdir=/usr/lib64/openmpi/lib --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man/openmpi-x86_64 --infodir=/usr/share/info --enable-shared --disable-static --enable-doxygen checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... yes checking for mpicc... /usr/lib64/openmpi/bin/mpicc checking for x86_64-redhat-linux-gnu-gcc... /usr/lib64/openmpi/bin/mpicc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /usr/lib64/openmpi/bin/mpicc accepts -g... yes checking for /usr/lib64/openmpi/bin/mpicc option to accept ISO C89... none needed checking whether /usr/lib64/openmpi/bin/mpicc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of /usr/lib64/openmpi/bin/mpicc... none checking how to run the C preprocessor... /usr/lib64/openmpi/bin/mpicc -E checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking if C compiler is IBM XLC... no checking if C compiler is pgcc... no checking if C compiler is Fujitsu fccpx... no checking for MPI_Comm_rank... yes checking for MPI_File_open... yes checking build system type... x86_64-redhat-linux-gnu checking host system type... x86_64-redhat-linux-gnu checking for x86_64-redhat-linux-gnu-ar... no checking for x86_64-redhat-linux-gnu-lib... no checking for x86_64-redhat-linux-gnu-link... no checking for ar... ar checking the archiver (ar) interface... ar checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by /usr/lib64/openmpi/bin/mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-redhat-linux-gnu file names to x86_64-redhat-linux-gnu format... func_convert_file_noop checking how to convert x86_64-redhat-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for x86_64-redhat-linux-gnu-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for x86_64-redhat-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-redhat-linux-gnu-ar... ar checking for archiver @FILE support... @ checking for x86_64-redhat-linux-gnu-strip... no checking for strip... strip checking for x86_64-redhat-linux-gnu-ranlib... no checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from /usr/lib64/openmpi/bin/mpicc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for x86_64-redhat-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /usr/lib64/openmpi/bin/mpicc supports -fno-rtti -fno-exceptions... no checking for /usr/lib64/openmpi/bin/mpicc option to produce PIC... -fPIC -DPIC checking if /usr/lib64/openmpi/bin/mpicc PIC flag -fPIC -DPIC works... yes checking if /usr/lib64/openmpi/bin/mpicc static flag -static works... no checking if /usr/lib64/openmpi/bin/mpicc supports -c -o file.o... yes checking if /usr/lib64/openmpi/bin/mpicc supports -c -o file.o... (cached) yes checking whether the /usr/lib64/openmpi/bin/mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for mpicxx... /usr/lib64/openmpi/bin/mpicxx checking whether we are using the GNU C++ compiler... yes checking whether /usr/lib64/openmpi/bin/mpicxx accepts -g... yes checking dependency style of /usr/lib64/openmpi/bin/mpicxx... none checking how to run the C++ preprocessor... /usr/lib64/openmpi/bin/mpicxx -E checking for ld used by /usr/lib64/openmpi/bin/mpicxx... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the /usr/lib64/openmpi/bin/mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for /usr/lib64/openmpi/bin/mpicxx option to produce PIC... -fPIC -DPIC checking if /usr/lib64/openmpi/bin/mpicxx PIC flag -fPIC -DPIC works... yes checking if /usr/lib64/openmpi/bin/mpicxx static flag -static works... no checking if /usr/lib64/openmpi/bin/mpicxx supports -c -o file.o... yes checking if /usr/lib64/openmpi/bin/mpicxx supports -c -o file.o... (cached) yes checking whether the /usr/lib64/openmpi/bin/mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for MPI_File_close... yes checking whether MPI C++ compiler redefines SEEK_SET ... no checking for mpif77... /usr/lib64/openmpi/bin/mpif77 checking for mpif90... /usr/lib64/openmpi/bin/mpif90 checking for x86_64-redhat-linux-gnu-g77... /usr/lib64/openmpi/bin/mpif77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether /usr/lib64/openmpi/bin/mpif77 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for /usr/lib64/openmpi/bin/mpif77 option to produce PIC... -fPIC checking if /usr/lib64/openmpi/bin/mpif77 PIC flag -fPIC works... yes checking if /usr/lib64/openmpi/bin/mpif77 static flag -static works... no checking if /usr/lib64/openmpi/bin/mpif77 supports -c -o file.o... yes checking if /usr/lib64/openmpi/bin/mpif77 supports -c -o file.o... (cached) yes checking whether the /usr/lib64/openmpi/bin/mpif77 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from /usr/lib64/openmpi/bin/mpif77... -v checking for Fortran 77 libraries of /usr/lib64/openmpi/bin/mpif77... -L/usr/lib64/openmpi/lib -L/usr/lib/gcc/x86_64-redhat-linux/8 -L/usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/8/../../.. -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lquadmath -lpthread checking whether /usr/lib64/openmpi/bin/mpif77 is a valid MPI compiler... yes checking for x86_64-redhat-linux-gnu-gfortran... /usr/lib64/openmpi/bin/mpif90 checking whether we are using the GNU Fortran compiler... yes checking whether /usr/lib64/openmpi/bin/mpif90 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for /usr/lib64/openmpi/bin/mpif90 option to produce PIC... -fPIC checking if /usr/lib64/openmpi/bin/mpif90 PIC flag -fPIC works... yes checking if /usr/lib64/openmpi/bin/mpif90 static flag -static works... no checking if /usr/lib64/openmpi/bin/mpif90 supports -c -o file.o... yes checking if /usr/lib64/openmpi/bin/mpif90 supports -c -o file.o... (cached) yes checking whether the /usr/lib64/openmpi/bin/mpif90 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from /usr/lib64/openmpi/bin/mpif90... -v checking for Fortran libraries of /usr/lib64/openmpi/bin/mpif90... -L/usr/lib64/openmpi/lib -L/usr/lib/gcc/x86_64-redhat-linux/8 -L/usr/lib/gcc/x86_64-redhat-linux/8/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/8/../../.. -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lm -lquadmath -lpthread checking whether mpi.mod is available... yes checking whether /usr/lib64/openmpi/bin/mpif90 is a valid MPI compiler... yes checking for Fortran flag needed to accept free-form source... -ffree-form checking for Fortran flag to compile preprocessed .F files... none checking for Fortran flag to compile preprocessed .F90 files... none checking for Fortran flag to compile preprocessed .F files... (cached) none checking how to define symbols for preprocessed Fortran... -D checking for Fortran flag to compile .f files... none checking for Fortran flag to compile .F files... none checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .F90 files... none checking for Fortran flag needed to accept fixed-form source... -ffixed-form checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking for C-equivalent to Fortran routine "SUB_A"... sub_a_ checking if Fortran compiler is NAG... no checking Fortran compiler treating constant modifier... 8 checking Fortran 90 module extension... mod checking Fortran 90 module inclusion flag... -I checking Fortran 90 module extension... (cached) mod checking whether Fortran 90 compiler capitalizes .mod filenames... no configure: creating ./config.lt config.lt: creating libtool checking whether MPI library is built with shared library support... yes checking for egrep... (cached) /usr/bin/grep -E checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for sed handling option -i ... /usr/bin/sed -i'' checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for m4... m4 checking m4 additional flags... none needed checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for inline... inline checking for IEEE floating point format... yes checking for strerror... yes checking for access... yes checking for unlink... yes checking search.h usability... yes checking search.h presence... yes checking for search.h... yes checking for tsearch... yes checking for tdelete... yes checking for MPI_Offset... yes checking size of MPI_Offset... 8 checking size of MPI_Aint... 8 checking for MPI_Get_address... yes checking for MPI_Type_create_subarray... yes checking for MPI_Type_create_hvector... yes checking for MPI_Type_create_hindexed... yes checking for MPI_Type_create_struct... yes checking for MPI_Type_create_resized... yes checking for MPI_Type_get_extent... yes checking whether MPI_COMBINER_DUP is declared... yes checking whether MPI_COMBINER_HVECTOR_INTEGER is declared... yes checking whether MPI_COMBINER_HINDEXED_INTEGER is declared... yes checking whether MPI_COMBINER_SUBARRAY is declared... yes checking whether MPI_COMBINER_DARRAY is declared... yes checking whether MPI_COMBINER_RESIZED is declared... yes checking whether MPI_COMBINER_STRUCT_INTEGER is declared... yes checking whether MPI_COMBINER_INDEXED_BLOCK is declared... yes checking whether MPI_COMBINER_F90_REAL is declared... yes checking whether MPI_COMBINER_F90_INTEGER is declared... yes checking whether MPI_COMBINER_F90_COMPLEX is declared... yes checking whether MPI_ERR_FILE_EXISTS is declared... yes checking whether MPI_ERR_NO_SUCH_FILE is declared... yes checking whether MPI_ERR_AMODE is declared... yes checking whether MPI_ERR_NOT_SAME is declared... yes checking whether MPI_ERR_BAD_FILE is declared... yes checking whether MPI_ERR_READ_ONLY is declared... yes checking whether MPI_ERR_ACCESS is declared... yes checking whether MPI_ERR_NO_SPACE is declared... yes checking whether MPI_ERR_QUOTA is declared... yes checking whether MPI datatype MPI_OFFSET is defined ... yes checking whether MPI datatype MPI_INTEGER8 is defined ... yes checking whether MPI datatype MPI_CHARACTER is defined ... yes checking whether MPI datatype MPI_REAL is defined ... yes checking whether MPI datatype MPI_INTEGER is defined ... yes checking whether MPI datatype MPI_DOUBLE_PRECISION is defined ... yes checking whether MPI datatype MPI_INTEGER1 is defined ... yes checking whether MPI datatype MPI_INTEGER2 is defined ... yes checking whether MPI datatype MPI_INTEGER4 is defined ... yes checking whether MPI datatype MPI_REAL2 is defined ... no checking whether MPI datatype MPI_REAL4 is defined ... yes checking whether MPI datatype MPI_REAL8 is defined ... yes checking whether char is unsigned... no checking whether byte ordering is bigendian... no checking for size_t... yes checking for off_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking for schar... no checking for uchar... no checking for ushort... yes checking for uint... yes checking for longlong... no checking for ulonglong... no checking for int64... no checking for uint64... no checking size of size_t... 8 checking size of off_t... 8 checking size of char... 1 checking size of signed char... 1 checking size of unsigned char... 1 checking size of short... 2 checking size of unsigned short int... 2 checking size of unsigned short... 2 checking size of int... 4 checking size of unsigned int... 4 checking size of long... 8 checking size of float... 4 checking size of double... 8 checking size of long long... 8 checking size of unsigned long long... 8 checking size of ptrdiff_t... 8 checking size of ushort... 2 checking size of uint... 4 checking size of MPI_Fint... 4 checking for /usr/bin/nm... /usr/bin/nm -B checking nm flags... checking for C-equivalent to Fortran routine "SUB"... sub_ checking for Fortran "integer*1"... yes checking for Fortran "integer*2"... yes checking for Fortran "integer*8"... yes checking if Fortran "integer*1" is ... "signed char" in C checking if Fortran "integer*2" is ... "short" in C checking if Fortran "integer*8" is ... "int" in C checking if Fortran "integer" is ... "int" in C checking if Fortran "real" is ... "float" in C checking if Fortran "doubleprecision" is ... "double" in C checking for Fortran-equivalent to netCDF "byte"... byte checking for Fortran-equivalent to netCDF "short"... integer*2 checking for Fortran 77 GNU intrinsic INT... yes checking for Fortran 77 intrinsic INT1... no checking for Fortran 77 intrinsic INT2... yes checking for Fortran 77 intrinsic INT8... yes checking for gcov... gcov checking if C++ macro __func__ or __FUNCTION__ is defined... yes checking for latex... no checking for dvipdf... no checking for mpiexec... /usr/lib64/openmpi/bin/mpiexec checking for gcc... /usr/bin/gcc checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/dispatchers/Makefile config.status: creating src/libs/Makefile config.status: creating src/include/Makefile config.status: creating src/include/pnetcdf.h config.status: creating src/drivers/Makefile config.status: creating src/drivers/common/Makefile config.status: creating src/drivers/include/Makefile config.status: creating src/drivers/ncmpio/Makefile config.status: creating src/drivers/nc4io/Makefile config.status: creating src/drivers/ncbbio/Makefile config.status: creating src/drivers/ncfoo/Makefile config.status: creating src/binding/Makefile config.status: creating src/binding/cxx/Makefile config.status: creating src/binding/f77/Makefile config.status: creating src/binding/f77/pnetcdf.inc config.status: creating src/binding/f90/Makefile config.status: creating src/binding/f90/pnetcdf.f90 config.status: creating src/binding/f90/api.fh config.status: creating src/binding/f90/nfmpi_constants.fh config.status: creating src/utils/Makefile config.status: creating src/utils/ncoffsets/Makefile config.status: creating src/utils/pnetcdf_version/Makefile config.status: creating src/utils/ncvalidator/Makefile config.status: creating src/utils/ncmpidiff/Makefile config.status: creating src/utils/ncmpidump/Makefile config.status: creating src/utils/ncmpigen/Makefile config.status: creating src/utils/ncmpilogdump/Makefile config.status: creating src/utils/pnetcdf-config config.status: creating src/packaging/Makefile config.status: creating src/packaging/pnetcdf.pc config.status: creating examples/Makefile config.status: creating examples/C/Makefile config.status: creating examples/tutorial/Makefile config.status: creating examples/CXX/Makefile config.status: creating examples/F77/Makefile config.status: creating examples/F90/Makefile config.status: creating examples/burst_buffer/Makefile config.status: creating benchmarks/Makefile config.status: creating benchmarks/C/Makefile config.status: creating benchmarks/FLASH-IO/Makefile config.status: creating doc/Makefile config.status: creating doc/pnetcdf-api/Makefile config.status: creating man/Makefile config.status: creating test/Makefile config.status: creating test/common/Makefile config.status: creating test/C/Makefile config.status: creating test/fandc/Makefile config.status: creating test/nc_test/Makefile config.status: creating test/cdf_format/Makefile config.status: creating test/nc4/Makefile config.status: creating test/header/Makefile config.status: creating test/testcases/Makefile config.status: creating test/nonblocking/Makefile config.status: creating test/largefile/Makefile config.status: creating test/CXX/Makefile config.status: creating test/subfile/Makefile config.status: creating test/nf_test/Makefile config.status: creating test/nf_test/tests.inc config.status: creating test/nf90_test/Makefile config.status: creating test/nf90_test/tests.inc config.status: creating test/F90/Makefile config.status: creating test/burst_buffer/Makefile config.status: creating src/include/config.h config.status: executing depfiles commands config.status: executing libtool commands ------------------------------------------------------------------------------ PnetCDF Version 1.11.1 Features: Build static libraries - no Build shared libraries - yes Build Fortran APIs - yes Build C++ APIs - yes Compilers: MPICC = /usr/lib64/openmpi/bin/mpicc MPICXX = /usr/lib64/openmpi/bin/mpicxx MPIF77 = /usr/lib64/openmpi/bin/mpif77 MPIF90 = /usr/lib64/openmpi/bin/mpif90 CFLAGS = -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic CXXFLAGS = -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic FFLAGS = -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -I/usr/lib64/gfortran/modules FCFLAGS = -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -I/usr/lib64/gfortran/modules LDFLAGS = -Wl,-z,relro Now run 'make' to build the library and utility tools. Then run 'make []' for testing and installation, where the optional can be: tests - build all test programs (build only, no run) check - run sequential test programs ptest - run parallel test programs on 4 MPI processes ptests - run parallel test programs on 3,4,6,8 MPI processes install - install PnetCDF library in /usr ------------------------------------------------------------------------------ + /usr/bin/make Making all in src make[1]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src' Making all in include make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/include' /usr/bin/make all-am make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/include' make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/include' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/include' Making all in dispatchers make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/dispatchers' m4 -DPNETCDF -I../../m4 attr_getput.m4 >attr_getput.c m4 -DPNETCDF -I../../m4 var_getput.m4 >var_getput.c /usr/bin/make all-am make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/dispatchers' CC lib_version.lo CC file.lo CC dimension.lo CC variable.lo CC attribute.lo CC error_codes.lo CC attr_getput.lo CC var_getput.lo CCLD libdispatchers.la make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/dispatchers' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/dispatchers' Making all in drivers make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers' Making all in include make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/include' m4 -DPNETCDF -I../../../m4 ncx_h.m4 >ncx.h /usr/bin/make all-am make[4]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/include' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/include' make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/include' Making all in common make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/common' m4 -DPNETCDF -I../../../m4 -DERANGE_FILL ncx.m4 >ncx.c m4 -DPNETCDF -I../../../m4 -DERANGE_FILL convert_swap.m4 >convert_swap.c /usr/bin/make all-am make[4]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/common' CC utf8proc.lo CC mem_alloc.lo CC dtype_decode.lo CC create_imaptype.lo CC error_mpi2nc.lo CC check_name.lo CC pack_unpack.lo CC utils.lo CC error_posix2nc.lo CC hash_map.lo CC ncx.lo CC convert_swap.lo CCLD libcommon.la make[4]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/common' make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/common' Making all in ncmpio make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/ncmpio' m4 -DPNETCDF -I../../../m4 -DERANGE_FILL ncmpio_getput.m4 >ncmpio_getput.c m4 -DPNETCDF -I../../../m4 -DERANGE_FILL ncmpio_i_getput.m4 >ncmpio_i_getput.c m4 -DPNETCDF -I../../../m4 -DERANGE_FILL ncmpio_varn.m4 >ncmpio_varn.c m4 -DPNETCDF -I../../../m4 -DERANGE_FILL ncmpio_i_varn.m4 >ncmpio_i_varn.c m4 -DPNETCDF -I../../../m4 -DERANGE_FILL ncmpio_attr.m4 >ncmpio_attr.c /usr/bin/make all-am make[4]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/ncmpio' CC ncmpio_driver.lo CC ncmpio_create.lo CC ncmpio_open.lo CC ncmpio_enddef.lo ncmpio_enddef.c: In function 'ncmpio_NC_check_voffs': ncmpio_enddef.c:753:13: warning: 'varp' may be used uninitialized in this function [-Wmaybe-uninitialized] printf("Record variable section begin offset (%lld) is less than fixed-size variable section end offset (%lld)\n", varp->begin, prev_off); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CC ncmpio_close.lo CC ncmpio_sync.lo CC ncmpio_file_misc.lo CC ncmpio_header_get.lo CC ncmpio_header_put.lo CC ncmpio_dim.lo CC ncmpio_var.lo CC ncmpio_bput.lo CC ncmpio_filetype.lo CC ncmpio_wait.lo ncmpio_wait.c: In function 'construct_filetypes': ncmpio_wait.c:522:12: warning: 'err' may be used uninitialized in this function [-Wmaybe-uninitialized] if (err != NC_NOERR) *filetype = MPI_BYTE; ^ CC ncmpio_vard.lo ncmpio_vard.c: In function 'ncmpio_get_vard': ncmpio_vard.c:314:11: warning: 'xtype_is_contig' may be used uninitialized in this function [-Wmaybe-uninitialized] err = ncmpio_read_write(ncp, rw_flag, coll_indep, offset, nelems, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ xtype, xbuf, xtype_is_contig); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ncmpio_vard.c:57:51: note: 'xtype_is_contig' was declared here int mpireturn, status=NC_NOERR, err=NC_NOERR, xtype_is_contig; ^~~~~~~~~~~~~~~ ncmpio_vard.c:314:11: warning: 'xtype' may be used uninitialized in this function [-Wmaybe-uninitialized] err = ncmpio_read_write(ncp, rw_flag, coll_indep, offset, nelems, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ xtype, xbuf, xtype_is_contig); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ncmpio_vard.c:62:43: note: 'xtype' was declared here MPI_Datatype etype=MPI_DATATYPE_NULL, xtype; ^~~~~ CC ncmpio_fill.lo CC ncmpio_util.lo CC ncmpio_hash_func.lo CC ncmpio_file_io.lo CC ncmpio_getput.lo ncmpio_getput.c: In function 'ncmpio_get_var': ncmpio_getput.c:516:11: warning: 'xtype_is_contig' may be used uninitialized in this function [-Wmaybe-uninitialized] err = ncmpio_read_write(ncp, NC_REQ_RD, coll_indep, offset, nelems, xtype, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ xbuf, xtype_is_contig); ~~~~~~~~~~~~~~~~~~~~~~ ncmpio_getput.c:367:52: note: 'xtype_is_contig' was declared here int err=NC_NOERR, status=NC_NOERR, coll_indep, xtype_is_contig; ^~~~~~~~~~~~~~~ ncmpio_getput.c: In function 'ncmpio_put_var': ncmpio_getput.c:284:11: warning: 'xtype' may be used uninitialized in this function [-Wmaybe-uninitialized] err = ncmpio_read_write(ncp, NC_REQ_WR, coll_indep, offset, nelems, xtype, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ xbuf, xtype_is_contig); ~~~~~~~~~~~~~~~~~~~~~~ ncmpio_getput.c:120:25: note: 'xtype' was declared here MPI_Datatype itype, xtype, imaptype, filetype=MPI_BYTE; ^~~~~ ncmpio_getput.c:284:11: warning: 'nelems' may be used uninitialized in this function [-Wmaybe-uninitialized] err = ncmpio_read_write(ncp, NC_REQ_WR, coll_indep, offset, nelems, xtype, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ xbuf, xtype_is_contig); ~~~~~~~~~~~~~~~~~~~~~~ ncmpio_getput.c:116:51: note: 'nelems' was declared here int mpireturn, err=NC_NOERR, status=NC_NOERR, nelems, buftype_is_contig; ^~~~~~ ncmpio_getput.c:284:11: warning: 'xtype_is_contig' may be used uninitialized in this function [-Wmaybe-uninitialized] err = ncmpio_read_write(ncp, NC_REQ_WR, coll_indep, offset, nelems, xtype, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ xbuf, xtype_is_contig); ~~~~~~~~~~~~~~~~~~~~~~ ncmpio_getput.c:118:21: note: 'xtype_is_contig' was declared here int coll_indep, xtype_is_contig; ^~~~~~~~~~~~~~~ CC ncmpio_i_getput.lo CC ncmpio_varn.lo CC ncmpio_i_varn.lo CC ncmpio_attr.lo ncmpio_attr.c: In function 'ncmpio_rename_att': ncmpio_attr.c:483:5: warning: 'attr_id' may be used uninitialized in this function [-Wmaybe-uninitialized] ncmpio_hash_replace(ncap->nameT, attrp->name, nnewname, attr_id); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CCLD libncmpio.la make[4]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/ncmpio' make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/ncmpio' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers' Making all in binding make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding' Making all in cxx make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding/cxx' cat ./pnetcdf.in >pnetcdf set -e; for i in ncmpi_notyet.h ncmpiCheck.h ncmpiType.h ncmpiAtt.h ncmpiEnumType.h ncmpiGroupAtt.h ncmpiGroup.h ncmpiByte.h ncmpiChar.h ncmpiCompoundType.h ncmpiDouble.h ncmpiFloat.h ncmpiInt.h ncmpiInt64.h ncmpiOpaqueType.h ncmpiShort.h ncmpiUbyte.h ncmpiUint.h ncmpiUint64.h ncmpiUshort.h ncmpiException.h ncmpiDim.h ncmpiFile.h ncmpiVarAtt.h ncmpiVar.h ncmpiVlenType.h; do ( \ /usr/bin/sed -e '/#ifndef/d' -e '/#define/d' -e '/#endif/d' -e '/#include/d' ./$i >> pnetcdf ; \ ) ; done /usr/bin/make all-am make[4]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding/cxx' CXX ncmpi_notyet.lo CXX ncmpiCheck.lo CXX ncmpiType.lo CXX ncmpiAtt.lo CXX ncmpiEnumType.lo CXX ncmpiGroupAtt.lo CXX ncmpiGroup.lo CXX ncmpiByte.lo CXX ncmpiChar.lo CXX ncmpiCompoundType.lo CXX ncmpiDouble.lo CXX ncmpiFloat.lo CXX ncmpiInt.lo CXX ncmpiInt64.lo CXX ncmpiOpaqueType.lo CXX ncmpiShort.lo CXX ncmpiUbyte.lo CXX ncmpiUint.lo CXX ncmpiUint64.lo CXX ncmpiUshort.lo CXX ncmpiException.lo CXX ncmpiDim.lo CXX ncmpiFile.lo CXX ncmpiVarAtt.lo CXX ncmpiVar.lo CXX ncmpiVlenType.lo CXXLD libcxx.la make[4]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding/cxx' make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding/cxx' Making all in f77 make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding/f77' F77 strerrorf.lo F77 strerrnof.lo F77 inq_libversf.lo rm -f mpifnetcdf.h issyserrf.c xstrerrorf.c xstrerrnof.c xinq_libversf.c allf.c ./buildiface -infile=../../../src/include/pnetcdf.h -deffile=./defs > allf.c CC issyserrf.lo CC xstrerrorf.lo CC xstrerrnof.lo CC xinq_libversf.lo CC allf.lo F77LD libf77.la make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding/f77' Making all in f90 make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding/f90' m4 -DPNETCDF -DINTENTV=INOUT getput_text.m4 >getput_text.fh m4 -DPNETCDF -DINTENTV=INOUT getput_var.m4 >getput_var.fh m4 -DPNETCDF -DINTENTV=INOUT getput_varn.m4 >getput_varn.fh m4 -DPNETCDF -DINTENTV=INOUT getput_vard.m4 >getput_vard.fh /usr/bin/make all-am make[4]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding/f90' FC pnetcdf.lo FCLD libf90.la make[4]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding/f90' make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding/f90' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding' Making all in packaging make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/packaging' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/packaging' Making all in . make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src' Making all in libs make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/libs' GEN libpnetcdf.la make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/libs' Making all in utils make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils' Making all in ncmpigen make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncmpigen' CC main.o CC load.o CC escapes.o CC getfill.o CC init.o CC genlib.o CC ncmpigentab.o y.tab.c: In function 'ncmpiparse': y.tab.c:693:1: warning: label 'yyerrlab' defined but not used [-Wunused-label] In file included from ./ncmpigen.y:1317: At top level: lex.ncmpi.c:1625:17: warning: 'yyunput' defined but not used [-Wunused-function] ncmpigentab.c:2:19: warning: 'yysccsid' defined but not used [-Wunused-const-variable=] static const char yysccsid[] = "@(#)yaccpar 1.9 (Berkeley) 02/21/93"; ^~~~~~~~ CCLD ncmpigen make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncmpigen' Making all in ncmpidump make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncmpidump' CC ncmpidump.o CC vardata.o CC dumplib.o CCLD ncmpidump make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncmpidump' Making all in ncmpidiff make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncmpidiff' CC ncmpidiff.o CCLD ncmpidiff make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncmpidiff' Making all in ncvalidator make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncvalidator' /usr/bin/gcc -o ncvalidator ncvalidator.c make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncvalidator' Making all in pnetcdf_version make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/pnetcdf_version' /usr/bin/gcc -DMPICC="\"/usr/lib64/openmpi/bin/mpicc\"" -DCFLAGS="\"-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic\"" -DCONFIGURE_ARGS_CLEAN="\"--build=x86_64-redhat-linux-gnu --host=x86_64-redhat-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/lib64/openmpi/bin --sbindir=/usr/sbin --sysconfdir=/etc/openmpi-x86_64 --datadir=/usr/share --includedir=/usr/include/openmpi-x86_64 --libdir=/usr/lib64/openmpi/lib --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man/openmpi-x86_64 --infodir=/usr/share/info --enable-shared --disable-static --enable-doxygen\"" -DPNETCDF_VERSION="\"1.11.1\"" -DMPICXX="\"/usr/lib64/openmpi/bin/mpicxx\"" -DCXXFLAGS="\"-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic\"" -DMPIF77="\"/usr/lib64/openmpi/bin/mpif77\"" -DFFLAGS="\"-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -I/usr/lib64/gfortran/modules\"" -DMPIF90="\"/usr/lib64/openmpi/bin/mpif90\"" -DFCFLAGS="\"-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -I/usr/lib64/gfortran/modules\"" -o pnetcdf_version pnetcdf_version.c make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/pnetcdf_version' Making all in ncoffsets make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncoffsets' /usr/bin/gcc -o ncoffsets ncoffsets.c make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncoffsets' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils' make[1]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src' Making all in man make[1]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/man' m4 -DPNETCDF -DAPI=C -DPNETCDF_VERSION=1.11.1 pnetcdf.m4 > pnetcdf.3 || rm -f pnetcdf.3 m4 -DPNETCDF -DAPI=F -DPNETCDF_VERSION=1.11.1 pnetcdf.m4 > pnetcdf_f77.3 || rm -f pnetcdf_f77.3 m4 -DPNETCDF -DPNETCDF_VERSION=1.11.1 pnetcdf_f90.m4 > pnetcdf_f90.3 || rm -f pnetcdf_f90.3 make[1]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/man' Making all in examples make[1]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples' Making all in C make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/C' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/C' Making all in tutorial make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/tutorial' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/tutorial' Making all in CXX make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/CXX' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/CXX' Making all in F77 make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/F77' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/F77' Making all in F90 make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/F90' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/F90' make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples' make[1]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples' Making all in benchmarks make[1]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/benchmarks' Making all in C make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/benchmarks/C' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/benchmarks/C' Making all in FLASH-IO make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/benchmarks/FLASH-IO' PPFC get_mfluid_property.o physicaldata.fh:46:24: parameter(k2d=ndim/2) 1 Warning: Integer division truncated to constant '1' at (1) [-Winteger-division] get_mfluid_property.F90:1:39: subroutine get_mfluid_property(property, value) 1 Warning: Unused dummy argument 'property' at (1) [-Wunused-dummy-argument] PPFC flash_release.o PPFC flash_benchmark_io.o physicaldata.fh:46:24: parameter(k2d=ndim/2) 1 Warning: Integer division truncated to constant '1' at (1) [-Winteger-division] physicaldata.fh:46:24: parameter(k2d=ndim/2) 1 Warning: Integer division truncated to constant '1' at (1) [-Winteger-division] PPFC checkpoint_ncmpi_parallel.o physicaldata.fh:46:24: parameter(k2d=ndim/2) 1 Warning: Integer division truncated to constant '1' at (1) [-Winteger-division] PPFC plotfile_ncmpi_parallel.o physicaldata.fh:46:24: parameter(k2d=ndim/2) 1 Warning: Integer division truncated to constant '1' at (1) [-Winteger-division] FCLD flash_benchmark_io make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/benchmarks/FLASH-IO' make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/benchmarks' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/benchmarks' make[1]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/benchmarks' Making all in test make[1]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test' Making all in common make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/common' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/common' Making all in C make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/C' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/C' Making all in fandc make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/fandc' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/fandc' Making all in nc_test make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nc_test' m4 -DPNETCDF -I../../m4 tests.h.m4 > tests.h /usr/bin/make all-am make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nc_test' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nc_test' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nc_test' Making all in cdf_format make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/cdf_format' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/cdf_format' Making all in header make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/header' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/header' Making all in testcases make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/testcases' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/testcases' Making all in nonblocking make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nonblocking' m4 -DPNETCDF -I../../m4 bput_varn.m4 >bput_varn.c m4 -DPNETCDF -I../../m4 column_wise.m4 >column_wise.c /usr/bin/make all-am make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nonblocking' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nonblocking' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nonblocking' Making all in CXX make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/CXX' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/CXX' Making all in nf_test make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nf_test' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nf_test' Making all in nf90_test make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nf90_test' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nf90_test' Making all in F90 make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/F90' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/F90' make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test' make[1]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test' Making all in doc make[1]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/doc' Making all in pnetcdf-api make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/doc/pnetcdf-api' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/doc/pnetcdf-api' make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/doc' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/doc' make[1]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/doc' make[1]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1' make[1]: Nothing to be done for 'all-am'. make[1]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1' + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ LMOD_ALLOW_ROOT_USE=yes ++ '[' -n '' ']' ++ '[' yes '!=' yes ']' ++ '[' -z /usr/share/modulefiles ']' ++ findExec READLINK_CMD /usr/bin/readlink readlink ++ Nm=READLINK_CMD ++ confPath=/usr/bin/readlink ++ execNm=readlink ++ eval READLINK_CMD=/usr/bin/readlink +++ READLINK_CMD=/usr/bin/readlink ++ '[' '!' -x /usr/bin/readlink ']' ++ unset Nm confPath execNm ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec ++ '[' -f /proc/70/exe ']' +++ /usr/bin/readlink /proc/70/exe ++ my_shell=/usr/bin/bash +++ /usr/bin/expr /usr/bin/bash : '-*\(.*\)' ++ my_shell=/usr/bin/bash +++ /usr/bin/basename /usr/bin/bash ++ my_shell=bash ++ case ${my_shell} in ++ '[' -f /usr/share/lmod/lmod/init/bash ']' ++ . /usr/share/lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/share/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT LMOD_ALLOW_ROOT_USE READLINK_CMD + module unload mpi/openmpi-x86_64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.cBIMLv + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64 ++ dirname /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64 + cd pnetcdf-1.11.1 + '[' /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ LMOD_ALLOW_ROOT_USE=yes ++ '[' -n '' ']' ++ '[' yes '!=' yes ']' ++ '[' -z /usr/share/modulefiles ']' ++ findExec READLINK_CMD /usr/bin/readlink readlink ++ Nm=READLINK_CMD ++ confPath=/usr/bin/readlink ++ execNm=readlink ++ eval READLINK_CMD=/usr/bin/readlink +++ READLINK_CMD=/usr/bin/readlink ++ '[' '!' -x /usr/bin/readlink ']' ++ unset Nm confPath execNm ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec ++ '[' -f /proc/10200/exe ']' +++ /usr/bin/readlink /proc/10200/exe ++ my_shell=/usr/bin/bash +++ /usr/bin/expr /usr/bin/bash : '-*\(.*\)' ++ my_shell=/usr/bin/bash +++ /usr/bin/basename /usr/bin/bash ++ my_shell=bash ++ case ${my_shell} in ++ '[' -f /usr/share/lmod/lmod/init/bash ']' ++ . /usr/share/lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/share/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT LMOD_ALLOW_ROOT_USE READLINK_CMD + module load mpi/openmpi-x86_64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + export OMPI_MCA_rmaps_base_oversubscribe=1 + OMPI_MCA_rmaps_base_oversubscribe=1 + make install DESTDIR=/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64 Making install in src make[1]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src' Making install in include make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/include' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/include' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/include/openmpi-x86_64' /usr/bin/install -c -m 644 pnetcdf.h '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/include/openmpi-x86_64' make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/include' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/include' Making install in dispatchers make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/dispatchers' make install-am make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/dispatchers' make[4]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/dispatchers' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/dispatchers' make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/dispatchers' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/dispatchers' Making install in drivers make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers' Making install in include make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/include' make install-am make[4]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/include' make[5]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/include' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/include' make[4]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/include' make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/include' Making install in common make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/common' make install-am make[4]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/common' make[5]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/common' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/common' make[4]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/common' make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/common' Making install in ncmpio make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/ncmpio' make install-am make[4]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/ncmpio' make[5]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/ncmpio' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/ncmpio' make[4]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/ncmpio' make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers/ncmpio' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers' make[4]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers' make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/drivers' Making install in binding make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding' Making install in cxx make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding/cxx' make install-am make[4]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding/cxx' make[5]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding/cxx' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/include/openmpi-x86_64' /usr/bin/install -c -m 644 pnetcdf '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/include/openmpi-x86_64' make[5]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding/cxx' make[4]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding/cxx' make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding/cxx' Making install in f77 make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding/f77' make[4]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding/f77' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/include/openmpi-x86_64' /usr/bin/install -c -m 644 pnetcdf.inc '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/include/openmpi-x86_64' make[4]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding/f77' make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding/f77' Making install in f90 make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding/f90' make install-am make[4]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding/f90' make[5]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding/f90' make[5]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/include/openmpi-x86_64' /usr/bin/install -c -m 644 pnetcdf.mod '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/include/openmpi-x86_64' make[5]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding/f90' make[4]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding/f90' make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding/f90' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding' make[4]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding' make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/binding' Making install in packaging make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/packaging' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/packaging' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/lib/pkgconfig' /usr/bin/install -c -m 644 pnetcdf.pc '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/lib/pkgconfig' make install-data-hook make[4]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/packaging' /usr/bin/sed -i'' -e 's|INSTALL_PREFIX|/usr|g ; s|INSTALL_EXEC_PREFIX|/usr|g' /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/lib/pkgconfig/pnetcdf.pc make[4]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/packaging' make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/packaging' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/packaging' Making install in . make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src' Making install in libs make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/libs' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/libs' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/lib' /bin/sh ../../libtool --mode=install /usr/bin/install -c libpnetcdf.la '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/lib' libtool: install: /usr/bin/install -c .libs/libpnetcdf.so.3.0.1 /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/lib/libpnetcdf.so.3.0.1 libtool: install: (cd /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/lib && { ln -s -f libpnetcdf.so.3.0.1 libpnetcdf.so.3 || { rm -f libpnetcdf.so.3 && ln -s libpnetcdf.so.3.0.1 libpnetcdf.so.3; }; }) libtool: install: (cd /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/lib && { ln -s -f libpnetcdf.so.3.0.1 libpnetcdf.so || { rm -f libpnetcdf.so && ln -s libpnetcdf.so.3.0.1 libpnetcdf.so; }; }) libtool: install: /usr/bin/install -c .libs/libpnetcdf.lai /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/lib/libpnetcdf.la libtool: warning: remember to run 'libtool --finish /usr/lib64/openmpi/lib' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/libs' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/libs' Making install in utils make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils' Making install in ncmpigen make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncmpigen' make[4]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncmpigen' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c ncmpigen '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/bin' libtool: warning: '../../../src/libs/libpnetcdf.la' has not been installed in '/usr/lib64/openmpi/lib' libtool: install: /usr/bin/install -c .libs/ncmpigen /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/bin/ncmpigen /usr/bin/mkdir -p '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/share/man/openmpi-x86_64/man1' /usr/bin/install -c -m 644 ncmpigen.1 '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/share/man/openmpi-x86_64/man1' make[4]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncmpigen' make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncmpigen' Making install in ncmpidump make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncmpidump' make[4]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncmpidump' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c ncmpidump '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/bin' libtool: warning: '../../../src/libs/libpnetcdf.la' has not been installed in '/usr/lib64/openmpi/lib' libtool: install: /usr/bin/install -c .libs/ncmpidump /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/bin/ncmpidump /usr/bin/mkdir -p '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/share/man/openmpi-x86_64/man1' /usr/bin/install -c -m 644 ncmpidump.1 '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/share/man/openmpi-x86_64/man1' make[4]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncmpidump' make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncmpidump' Making install in ncmpidiff make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncmpidiff' make[4]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncmpidiff' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c ncmpidiff '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/bin' libtool: warning: '../../../src/libs/libpnetcdf.la' has not been installed in '/usr/lib64/openmpi/lib' libtool: install: /usr/bin/install -c .libs/ncmpidiff /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/bin/ncmpidiff /usr/bin/mkdir -p '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/share/man/openmpi-x86_64/man1' /usr/bin/install -c -m 644 ncmpidiff.1 '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/share/man/openmpi-x86_64/man1' make[4]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncmpidiff' make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncmpidiff' Making install in ncvalidator make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncvalidator' make[4]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncvalidator' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c ncvalidator '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/bin' libtool: install: /usr/bin/install -c ncvalidator /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/bin/ncvalidator /usr/bin/mkdir -p '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/share/man/openmpi-x86_64/man1' /usr/bin/install -c -m 644 ncvalidator.1 '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/share/man/openmpi-x86_64/man1' make[4]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncvalidator' make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncvalidator' Making install in pnetcdf_version make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/pnetcdf_version' make[4]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/pnetcdf_version' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c pnetcdf_version '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/bin' libtool: install: /usr/bin/install -c pnetcdf_version /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/bin/pnetcdf_version /usr/bin/mkdir -p '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/share/man/openmpi-x86_64/man1' /usr/bin/install -c -m 644 pnetcdf_version.1 '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/share/man/openmpi-x86_64/man1' make[4]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/pnetcdf_version' make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/pnetcdf_version' Making install in ncoffsets make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncoffsets' make[4]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncoffsets' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/bin' /bin/sh ../../../libtool --mode=install /usr/bin/install -c ncoffsets '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/bin' libtool: install: /usr/bin/install -c ncoffsets /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/bin/ncoffsets /usr/bin/mkdir -p '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/share/man/openmpi-x86_64/man1' /usr/bin/install -c -m 644 ncoffsets.1 '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/share/man/openmpi-x86_64/man1' make[4]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncoffsets' make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils/ncoffsets' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils' make[4]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/bin' /usr/bin/install -c pnetcdf-config '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/bin' make install-exec-hook make[5]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils' /usr/bin/sed -i'' -e 's|INSTALL_PREFIX|/usr|g ; s|INSTALL_EXEC_PREFIX|/usr|g' /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/bin/pnetcdf-config chmod +x /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/bin/pnetcdf-config make[5]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils' make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src/utils' make[1]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/src' Making install in man make[1]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/man' make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/man' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/share/man/openmpi-x86_64/man3' /usr/bin/install -c -m 644 pnetcdf.3 pnetcdf_f77.3 pnetcdf_f90.3 '/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/share/man/openmpi-x86_64/man3' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/man' make[1]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/man' Making install in examples make[1]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples' Making install in C make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/C' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/C' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/C' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/C' Making install in tutorial make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/tutorial' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/tutorial' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/tutorial' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/tutorial' Making install in CXX make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/CXX' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/CXX' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/CXX' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/CXX' Making install in F77 make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/F77' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/F77' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/F77' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/F77' Making install in F90 make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/F90' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/F90' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/F90' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples/F90' make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples' make[1]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/examples' Making install in benchmarks make[1]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/benchmarks' Making install in C make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/benchmarks/C' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/benchmarks/C' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/benchmarks/C' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/benchmarks/C' Making install in FLASH-IO make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/benchmarks/FLASH-IO' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/benchmarks/FLASH-IO' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/benchmarks/FLASH-IO' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/benchmarks/FLASH-IO' make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/benchmarks' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/benchmarks' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/benchmarks' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/benchmarks' make[1]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/benchmarks' Making install in test make[1]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test' Making install in common make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/common' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/common' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/common' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/common' Making install in C make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/C' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/C' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/C' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/C' Making install in fandc make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/fandc' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/fandc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/fandc' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/fandc' Making install in nc_test make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nc_test' make install-am make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nc_test' make[4]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nc_test' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nc_test' make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nc_test' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nc_test' Making install in cdf_format make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/cdf_format' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/cdf_format' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/cdf_format' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/cdf_format' Making install in header make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/header' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/header' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/header' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/header' Making install in testcases make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/testcases' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/testcases' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/testcases' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/testcases' Making install in nonblocking make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nonblocking' make install-am make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nonblocking' make[4]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nonblocking' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nonblocking' make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nonblocking' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nonblocking' Making install in CXX make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/CXX' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/CXX' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/CXX' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/CXX' Making install in nf_test make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nf_test' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nf_test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nf_test' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nf_test' Making install in nf90_test make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nf90_test' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nf90_test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nf90_test' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/nf90_test' Making install in F90 make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/F90' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/F90' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/F90' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test/F90' make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test' make[1]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/test' Making install in doc make[1]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/doc' Making install in pnetcdf-api make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/doc/pnetcdf-api' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/doc/pnetcdf-api' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/doc/pnetcdf-api' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/doc/pnetcdf-api' make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/doc' make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1/doc' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/doc' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/doc' make[1]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1/doc' make[1]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1' make[2]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1' make[2]: Nothing to be done for 'install-exec-am'. make install-data-hook make[3]: Entering directory '/builddir/build/BUILD/pnetcdf-1.11.1' +----------------------------------------------------------------------------+ | | PnetCDF has been successfully installed under | /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr | | * PnetCDF header files have been installed in | /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/include | * PnetCDF library files have been installed in | /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib | * PnetCDF utility programs have been installed in | /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/bin | * PnetCDF man pages have been installed in | /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/share/man | | To compile your PnetCDF programs, please add the following to the command | line, so the compiler can find the PnetCDF header files: | -I/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/include | | Add the following line to link your program to PnetCDF library: | -L/builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib -lpnetcdf | | Add the following to your run-time environment variable LD_LIBRARY_PATH, | when linking your executable with the PnetCDF shared libraries. | /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib | | | PnetCDF is jointly developed by a team at Northwestern University and | Argonne National Laboratory. | | Visit PnetCDF project web site for more information | https://parallel-netcdf.github.io | +----------------------------------------------------------------------------+ make[3]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1' make[2]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1' make[1]: Leaving directory '/builddir/build/BUILD/pnetcdf-1.11.1' + /usr/bin/mkdir -p /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/share/pnetcdf + /usr/bin/cp AUTHORS COPYING COPYRIGHT CREDITS README RELEASE_NOTES /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64/usr/lib64/openmpi/share/pnetcdf + cat + cat + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ LMOD_ALLOW_ROOT_USE=yes ++ '[' -n '' ']' ++ '[' yes '!=' yes ']' ++ '[' -z /usr/share/modulefiles ']' ++ findExec READLINK_CMD /usr/bin/readlink readlink ++ Nm=READLINK_CMD ++ confPath=/usr/bin/readlink ++ execNm=readlink ++ eval READLINK_CMD=/usr/bin/readlink +++ READLINK_CMD=/usr/bin/readlink ++ '[' '!' -x /usr/bin/readlink ']' ++ unset Nm confPath execNm ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec ++ '[' -f /proc/10200/exe ']' +++ /usr/bin/readlink /proc/10200/exe ++ my_shell=/usr/bin/bash +++ /usr/bin/expr /usr/bin/bash : '-*\(.*\)' ++ my_shell=/usr/bin/bash +++ /usr/bin/basename /usr/bin/bash ++ my_shell=bash ++ case ${my_shell} in ++ '[' -f /usr/share/lmod/lmod/init/bash ']' ++ . /usr/share/lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/share/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT LMOD_ALLOW_ROOT_USE READLINK_CMD + module unload mpi/openmpi-x86_64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip /usr/bin/strip + /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile '' 1 + /usr/lib/rpm/brp-python-hardlink + PYTHON3=/usr/bin/python3 + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/lib64/openmpi/lib/libpnetcdf.la is executable but has no shebang, removing executable bit Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.R0dJIX + umask 022 + cd /builddir/build/BUILD + cd pnetcdf-1.11.1 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ LMOD_ALLOW_ROOT_USE=yes ++ '[' -n '' ']' ++ '[' yes '!=' yes ']' ++ '[' -z /usr/share/modulefiles ']' ++ findExec READLINK_CMD /usr/bin/readlink readlink ++ Nm=READLINK_CMD ++ confPath=/usr/bin/readlink ++ execNm=readlink ++ eval READLINK_CMD=/usr/bin/readlink +++ READLINK_CMD=/usr/bin/readlink ++ '[' '!' -x /usr/bin/readlink ']' ++ unset Nm confPath execNm ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec ++ '[' -f /proc/10992/exe ']' +++ /usr/bin/readlink /proc/10992/exe ++ my_shell=/usr/bin/bash +++ /usr/bin/expr /usr/bin/bash : '-*\(.*\)' ++ my_shell=/usr/bin/bash +++ /usr/bin/basename /usr/bin/bash ++ my_shell=bash ++ case ${my_shell} in ++ '[' -f /usr/share/lmod/lmod/init/bash ']' ++ . /usr/share/lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/share/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT LMOD_ALLOW_ROOT_USE READLINK_CMD + module load mpi/openmpi-x86_64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 + export OMPI_MCA_rmaps_base_oversubscribe=1 + OMPI_MCA_rmaps_base_oversubscribe=1 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ LMOD_ALLOW_ROOT_USE=yes ++ '[' -n '' ']' ++ '[' yes '!=' yes ']' ++ '[' -z /usr/share/modulefiles ']' ++ findExec READLINK_CMD /usr/bin/readlink readlink ++ Nm=READLINK_CMD ++ confPath=/usr/bin/readlink ++ execNm=readlink ++ eval READLINK_CMD=/usr/bin/readlink +++ READLINK_CMD=/usr/bin/readlink ++ '[' '!' -x /usr/bin/readlink ']' ++ unset Nm confPath execNm ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec ++ '[' -f /proc/10992/exe ']' +++ /usr/bin/readlink /proc/10992/exe ++ my_shell=/usr/bin/bash +++ /usr/bin/expr /usr/bin/bash : '-*\(.*\)' ++ my_shell=/usr/bin/bash +++ /usr/bin/basename /usr/bin/bash ++ my_shell=bash ++ case ${my_shell} in ++ '[' -f /usr/share/lmod/lmod/init/bash ']' ++ . /usr/share/lmod/lmod/init/bash +++ '[' -z '' ']' +++ case "$-" in +++ __lmod_vx=x +++ '[' -n x ']' +++ set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for this output (/usr/share/lmod/lmod/init/bash) Shell debugging restarted +++ unset __lmod_vx ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT LMOD_ALLOW_ROOT_USE READLINK_CMD + module unload mpi/openmpi-x86_64 + '[' -z '' ']' + case "$-" in + __lmod_sh_dbg=x + '[' -n x ']' + set +x Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output Shell debugging restarted + unset __lmod_sh_dbg + return 0 Processing files: pnetcdf-openmpi-1.11.1-2.el8.x86_64 + exit 0 Provides: libpnetcdf.so.3()(64bit)(openmpi-x86_64) pnetcdf-openmpi = 1.11.1-2.el8 pnetcdf-openmpi(x86-64) = 1.11.1-2.el8 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /bin/sh libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgfortran.so.5()(64bit) libgfortran.so.5(GFORTRAN_8)(64bit) libm.so.6()(64bit) libmpi.so.40()(64bit)(openmpi-x86_64) libmpi_cxx.so.40()(64bit)(openmpi-x86_64) libmpi_mpifh.so.40()(64bit)(openmpi-x86_64) libmpi_usempi_ignore_tkr.so.40()(64bit)(openmpi-x86_64) libmpi_usempif08.so.40()(64bit)(openmpi-x86_64) libpnetcdf.so.3()(64bit)(openmpi-x86_64) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libquadmath.so.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: pnetcdf-openmpi-devel-1.11.1-2.el8.x86_64 Provides: pnetcdf-openmpi-devel = 1.11.1-2.el8 pnetcdf-openmpi-devel(x86-64) = 1.11.1-2.el8 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64 Wrote: /builddir/build/RPMS/pnetcdf-openmpi-1.11.1-2.el8.x86_64.rpm Wrote: /builddir/build/RPMS/pnetcdf-openmpi-devel-1.11.1-2.el8.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.a6GNvK + umask 022 + cd /builddir/build/BUILD + cd pnetcdf-1.11.1 + /usr/bin/rm -rf /builddir/build/BUILDROOT/pnetcdf-1.11.1-2.el8.x86_64 + exit 0 Child return code was: 0