# rhbz#2104109 %bcond_with vtk # %bcond_without python %bcond_without hdf5 %bcond_without matio %bcond_with cgal %bcond_without doc %bcond_without check %bcond_with debug # This package fails its testsuite with LTO. Disable LTO for now %define _lto_cflags %{nil} ## https://github.com/openmeeg/openmeeg/issues/346 ExcludeArch: s390x #%%global relsuf rc4 Name: openmeeg Version: 2.5.8 Release: 5%{?dist} Summary: Low-frequency bio-electromagnetism solving forward problems in the field of EEG and MEG License: CeCILL-B URL: http://openmeeg.github.io/ Source0: https://github.com/%{name}/%{name}/archive/%{version}/%{name}-%{version}.tar.gz Patch0: %{name}-use_builtin_find_blas_lapack.patch Patch1: types.patch BuildRequires: make BuildRequires: cmake3 BuildRequires: gcc-c++, git, chrpath BuildRequires: gnuplot, wget, graphviz BuildRequires: expat-devel BuildRequires: flexiblas-devel %{?fedora:BuildRequires: gifticlib-devel} %{?fedora:BuildRequires: nifticlib-devel} BuildRequires: zlib-devel %if %{with hdf5} BuildRequires: hdf5-devel %endif %if %{with matio} BuildRequires: matio-devel %endif %if %{with vtk} BuildRequires: vtk-devel %endif %if %{with cgal} BuildRequires: CGAL-devel %endif # CGAL causes 'memory exhausted' error %global openmeeg_cmake_options \\\ %if %{with debug} \ -DCMAKE_BUILD_TYPE=Debug \\\ -DCMAKE_CXX_FLAGS_DEBUG:STRING="-O0 -g -fPIC" \\\ %else \ -DCMAKE_BUILD_TYPE=Release \\\ -DCMAKE_CXX_FLAGS_DEBUG:STRING="%{build_cxxflags}" \\\ %endif \ -DUSE_PROGRESSBAR=ON \\\ -DBUILD_SHARED_LIBS:BOOL=ON \\\ -DBUILD_SHARED_LIBS_OpenMEEG:BOOL=ON \\\ -DBUILD_SHARED_LIBS_matio:BOOL=ON \\\ -DBUILD_SHARED_LIBS_zlib:BOOL=ON \\\ -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES \\\ -DCMAKE_SKIP_RPATH:BOOL=YES \\\ -DCMAKE_INSTALL_LIBDIR:PATH=%{_lib} \\\ -DCMAKE_INSTALL_INCLUDEDIR:PATH=include/%{name} \\\ -DUSE_OMP:BOOL=ON \\\ %if %{with python} \ -DENABLE_PYTHON:BOOL=ON \\\ -DPYTHON_EXECUTABLE:FILEPATH=%{__python3} \\\ -DPYTHON_VERSION:STRING=%{python3_version} \\\ %endif \ %if %{with doc} \ -DBUILD_DOCUMENTATION:BOOL=ON \\\ %endif \ %if %{with check} \ -DBUILD_TESTING:BOOL=ON \\\ -DTEST_HEAD3:BOOL=OFF \\\ %endif \ -DBUILD_TOOLS:BOOL=ON \\\ -DENABLE_PACKAGING:BOOL=OFF \\\ -DSKIP_GITHUB_TESTS:BOOL=ON \\\ %if %{with cgal} \ -DUSE_CGAL:BOOL=ON \\\ %endif \ %{?fedora:-DUSE_GIFTI:BOOL=ON} \\\ %if %{with hdf5} \ -DUSE_SYSTEM_hdf5:BOOL=ON \\\ %endif \ %if %{with matio} \ -DUSE_SYSTEM_matio:BOOL=ON \\\ %endif \ %if %{with vtk} \ -DUSE_VTK:BOOL=ON \\\ %endif \ -DUSE_SYSTEM_zlib:BOOL=ON \\\ -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -Wno-dev %description The OpenMEEG software is a C++ package for solving the forward problems of electroencephalography (EEG) and magnetoencephalography (MEG). %package devel Summary: Development files for %{name} Requires: %{name}%{?_isa} = %{version}-%{release} %description devel The %{name}-devel package contains libraries and header files for developing applications that use OpenMEEG. %if %{with python} %package -n python%{python3_pkgversion}-openmeeg Summary: OpenMEEG binding for Python%{python3_pkgversion} %py_provides python3-%{name} BuildRequires: python%{python3_pkgversion}-devel BuildRequires: python%{python3_pkgversion}-numpy BuildRequires: python%{python3_pkgversion}-pytest BuildRequires: python%{python3_pkgversion}-setuptools BuildRequires: python%{python3_pkgversion}-wheel BuildRequires: swig Requires: %{name}%{?_isa} = %{version}-%{release} Requires: swig %description -n python%{python3_pkgversion}-openmeeg OpenMEEG binding for Python%{python3_pkgversion}. %endif %if %{with doc} %package doc Summary: Documentation files for OpenMEEG BuildRequires: doxygen BuildArch: noarch %description doc %{summary}. %endif %prep %autosetup -p1 -n %{name}-%{version} %build %if %{with debug} export CXXFLAGS="-O0 -g -fPIC" export CFLAGS="-O0 -g -fPIC" %endif %cmake %{openmeeg_cmake_options} %cmake_build %install %cmake_install %if %{with check} %check export FLEXIBLAS=netlib export LD_LIBRARY_PATH=%{buildroot}%{_libdir} export PYTHONPATH=%{buildroot}%{python3_sitearch} %if %{with debug} export OPENMEEG_DATA_PATH=%{_builddir}/%{name}-%{version}/data %ctest -- -VV --force-new-ctest-process -j1 --output-on-failure --debug -E 'openmeeg_python_test_python2.py' %else export OPENMEEG_DATA_PATH=%{_builddir}/%{name}-%{version}/data %ctest -- -E 'openmeeg_python_test_python2.py' %endif %endif %files %license LICENSE.txt %{_bindir}/om* %{_libdir}/lib*.so.1 %{_libdir}/lib*.so.1.1.0 %files devel %doc coding_guidelines.txt #%%{_libdir}/cmake/%%{name}/ %{_libdir}/lib*.so %{_includedir}/%{name}/ %if %{with python} %files -n python%{python3_pkgversion}-openmeeg %{python3_sitearch}/%{name}/ %{python3_sitearch}/%{name}-%{version}.dist-info/ %endif %if %{with doc} %files doc %license LICENSE.txt %{_docdir}/OpenMEEG/ %endif %changelog * Fri Oct 25 2024 Orion Poplawski <orion@nwra.com> - 2.5.8-5 - Rebuild for hdf5 1.14.5 * Tue Aug 20 2024 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 2.5.8-4 - Rebuild for nifticlib 3.x * Thu Jul 18 2024 Fedora Release Engineering <releng@fedoraproject.org> - 2.5.8-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild * Sat Jun 08 2024 Python Maint <python-maint@redhat.com> - 2.5.8-2 - Rebuilt for Python 3.13 * Mon Apr 22 2024 Gwyn Ciesla <gwync@protonmail.com> - 2.5.8-1 - 2.5.8 * Mon Apr 22 2024 Gwyn Ciesla <gwync@protonmail.com> - 2.5.7-4 - matio rebuild * Thu Jan 25 2024 Fedora Release Engineering <releng@fedoraproject.org> - 2.5.7-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Sun Jan 21 2024 Fedora Release Engineering <releng@fedoraproject.org> - 2.5.7-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild * Sun Nov 19 2023 Antonio Trande <sagitter@fedoraproject.org> - 2.5.7-1 - Release 2.5.7 * Thu Jul 20 2023 Fedora Release Engineering <releng@fedoraproject.org> - 2.5.5-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild * Tue Jun 13 2023 Python Maint <python-maint@redhat.com> - 2.5.5-3 - Rebuilt for Python 3.12 * Thu Jan 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 2.5.5-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild * Sun Aug 28 2022 Iñaki Úcar <iucar@fedoraproject.org> - 2.5.5-1 - Release 2.5.5 - Switch back to flexiblas rhbz#2121388 * Tue Jul 26 2022 Antonio Trande <sagitter@fedoraproject.org> - 2.4.7-1 - Release 2.4.7 - Disable vtk for rhbz#2104109 * Fri Jul 22 2022 Fedora Release Engineering <releng@fedoraproject.org> - 2.4.2-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild * Tue Jun 28 2022 Antonio Trande <sagitter@fedoraproject.org> - 2.4.2-1 - Release 2.4.2 - Disable tests (upstream bug #456) * Tue Jun 14 2022 Python Maint <python-maint@redhat.com> - 2.4.2-0.20 - Rebuilt for Python 3.11 * Sat Mar 05 2022 Antonio Trande <sagitter@fedoraproject.org> - 2.4.2-0.19 - Fix rhbz#2060866 * Thu Jan 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 2.4.2-0.18 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild * Thu Nov 25 2021 Orion Poplawski <orion@nwra.com> - 2.4.2-0.17 - Rebuild for vtk 9.1.0 * Thu Jul 22 2021 Fedora Release Engineering <releng@fedoraproject.org> - 2.4.2-0.16 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild * Fri Jun 04 2021 Python Maint <python-maint@redhat.com> - 2.4.2-0.15 - Rebuilt for Python 3.10 * Mon Apr 05 2021 Gwyn Ciesla <gwync@protonmail.com> - 2.4.2-0.14 - matio rebuild. * Tue Mar 30 2021 Antonio Trande <sagitter@fedoraproject.org> - 2.4.2-0.13 - Add vtk-java BR (rhbz#1944534) * Sun Jan 31 2021 Orion Poplawski <orion@nwra.com> - 2.4.2-0.12 - Rebuild for VTK 9 * Tue Jan 26 2021 Fedora Release Engineering <releng@fedoraproject.org> - 2.4.2-0.11 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild * Thu Jan 21 2021 Antonio Trande <sagitter@fedoraproject.org> - 2.4.2-0.10 - Patched for CMake-3.19.* (rhbz#1917435) * Mon Sep 28 2020 Antonio Trande <sagitter@fedoraproject.org> - 2.4.2-0.9 - Rebuilt and patched for matio-1.5.18 (rhbz#1880819) * Fri Aug 14 2020 Iñaki Úcar <iucar@fedoraproject.org> - 2.4.2-0.8 - https://fedoraproject.org/wiki/Changes/FlexiBLAS_as_BLAS/LAPACK_manager * Mon Aug 10 2020 Antonio Trande <sagitter@fedoraproject.org> - 2.4.2-0.7 - Disable debug builds * Mon Aug 10 2020 Jeff Law <law@redhat.com> - 2.4.2-0.6 - Disable LTO * Sat Aug 01 2020 Fedora Release Engineering <releng@fedoraproject.org> - 2.4.2-0.5 - Second attempt - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Tue Jul 28 2020 Fedora Release Engineering <releng@fedoraproject.org> - 2.4.2-0.4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Tue May 26 2020 Miro HronÄok <mhroncok@redhat.com> - 2.4.2-0.3 - Rebuilt for Python 3.9 * Wed Jan 29 2020 Fedora Release Engineering <releng@fedoraproject.org> - 2.4.2-0.2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild * Thu Oct 17 2019 Antonio Trande <sagitter@fedoraproject.org> - 2.4.2-0.1 - Pre-release 2.4.2 * Thu Oct 03 2019 Miro HronÄok <mhroncok@redhat.com> - 2.4.1-7 - Rebuilt for Python 3.8.0rc1 (#1748018) * Mon Aug 19 2019 Miro HronÄok <mhroncok@redhat.com> - 2.4.1-6 - Rebuilt for Python 3.8 * Thu Jul 25 2019 Fedora Release Engineering <releng@fedoraproject.org> - 2.4.1-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild * Mon Mar 18 2019 Orion Poplawski <orion@nwra.com> - 2.4.1-4 - Rebuild for vtk 8.2 * Fri Feb 01 2019 Fedora Release Engineering <releng@fedoraproject.org> - 2.4.1-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild * Sat Oct 27 2018 Orion Poplawski <orion@cora.nwra.com> - 2.4.1-2 - Rebuild for VTK 8.1 * Sun Sep 23 2018 Antonio Trande <sagitter@fedoraproject.org> - 2.4.1-1 - Release 2.4.1 - Exclude s390x build * Sat Sep 01 2018 Antonio Trande <sagitter@fedoraproject.org> - 2.4-0.5.rc4 - Switch to python3 * Fri Jul 13 2018 Fedora Release Engineering <releng@fedoraproject.org> - 2.4-0.4.rc4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild * Thu Jun 28 2018 Antonio Trande <sagitter@fedoraproject.org> - 2.4-0.3.rc4 - Update to 2.4-rc4 * Fri Apr 06 2018 Antonio Trande <sagitter@fedoraproject.org> - 2.4-0.2.rc1 - Update to 2.4-rc1 - Modified for epel7 * Fri Mar 23 2018 Antonio Trande <sagitter@fedoraproject.org> - 2.4-0.1.20180323gitee565c4 - Initial rpm