Warning: Permanently added '34.201.154.113' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/7086047-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64


Version: 0.70
PID: 13432
Logging PID: 13433
Task:
{'appstream': False,
 'background': False,
 'build_id': 7086047,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-x86_64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '8086a40489c7a048cea061f3220fc670b6b76ea2',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-pip-2ebe6bf4/seaview',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'seaview',
 'package_version': '5.0-9',
 'project_dirname': 'python-pip-2ebe6bf4',
 'project_name': 'python-pip-2ebe6bf4',
 'project_owner': 'thrnciar',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/thrnciar/python-pip-2ebe6bf4/fedora-rawhide-x86_64/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None}],
 'sandbox': 'thrnciar/python-pip-2ebe6bf4--thrnciar',
 'source_json': {},
 'source_type': None,
 'submitter': 'thrnciar',
 'tags': [],
 'task_id': '7086047-fedora-rawhide-x86_64',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-pip-2ebe6bf4/seaview /var/lib/copr-rpmbuild/workspace/workdir-difvcv9g/seaview --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-pip-2ebe6bf4/seaview', '/var/lib/copr-rpmbuild/workspace/workdir-difvcv9g/seaview', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-difvcv9g/seaview'...

Running: git checkout 8086a40489c7a048cea061f3220fc670b6b76ea2 --

cmd: ['git', 'checkout', '8086a40489c7a048cea061f3220fc670b6b76ea2', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-difvcv9g/seaview
rc: 0
stdout: 
stderr: Note: switching to '8086a40489c7a048cea061f3220fc670b6b76ea2'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 8086a40 automatic import of seaview

Running: copr-distgit-client sources

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-difvcv9g/seaview
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading seaview_5.0.tar.gz
INFO: Reading stdout from command: curl --help all
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
INFO: Calling: curl -H Pragma: -o seaview_5.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/thrnciar/python-pip-2ebe6bf4/seaview/seaview_5.0.tar.gz/md5/d9f1a97672efb3fd24850cf542326915/seaview_5.0.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100  462k  100  462k    0     0  15.2M      0 --:--:-- --:--:-- --:--:-- 15.5M
INFO: Reading stdout from command: md5sum seaview_5.0.tar.gz

Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-difvcv9g/seaview/seaview.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-difvcv9g/seaview --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1709292777.396084 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.5 starting (python version = 3.12.1, NVR = mock-5.5-1.fc39), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-difvcv9g/seaview/seaview.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-difvcv9g/seaview --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1709292777.396084 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-difvcv9g/seaview/seaview.spec)  Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.5
INFO: Mock Version: 5.5
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1709292777.396084/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1709292777.396084/root
INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/e8dbf0792f75021a089366b8f77f093467f35cb116bb46238f95e9d5dba1c529/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/e8dbf0792f75021a089366b8f77f093467f35cb116bb46238f95e9d5dba1c529/merged) with podman image umount
INFO: Using 'dnf' instead of 'dnf5' for bootstrap chroot
INFO: Package manager dnf detected and used (fallback)
INFO: Bootstrap image not marked ready
Start(bootstrap): installing dnf5 tooling
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                 205 MB/s |  17 MB     00:00    
fedora                                           36 MB/s |  20 MB     00:00    
Last metadata expiration check: 0:00:02 ago on Fri Mar  1 11:33:01 2024.
Dependencies resolved.
================================================================================
 Package             Architecture  Version               Repository        Size
================================================================================
Installing:
 dnf5                x86_64        5.1.13-1.fc41         fedora           605 k
 dnf5-plugins        x86_64        5.1.13-1.fc41         fedora           352 k
Installing dependencies:
 fmt                 x86_64        10.2.1-3.fc41         copr_base        126 k
 libdnf5             x86_64        5.1.13-1.fc41         fedora           990 k
 libdnf5-cli         x86_64        5.1.13-1.fc41         fedora           263 k
 sdbus-cpp           x86_64        1.5.0-1.fc41          fedora           113 k

Transaction Summary
================================================================================
Install  6 Packages

Total download size: 2.4 M
Installed size: 6.6 M
Downloading Packages:
(1/6): fmt-10.2.1-3.fc41.x86_64.rpm              11 MB/s | 126 kB     00:00    
(2/6): dnf5-plugins-5.1.13-1.fc41.x86_64.rpm     19 MB/s | 352 kB     00:00    
(3/6): dnf5-5.1.13-1.fc41.x86_64.rpm             22 MB/s | 605 kB     00:00    
(4/6): libdnf5-cli-5.1.13-1.fc41.x86_64.rpm      25 MB/s | 263 kB     00:00    
(5/6): sdbus-cpp-1.5.0-1.fc41.x86_64.rpm         13 MB/s | 113 kB     00:00    
(6/6): libdnf5-5.1.13-1.fc41.x86_64.rpm          38 MB/s | 990 kB     00:00    
--------------------------------------------------------------------------------
Total                                            36 MB/s | 2.4 MB     00:00     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : fmt-10.2.1-3.fc41.x86_64                               1/6 
  Installing       : libdnf5-5.1.13-1.fc41.x86_64                           2/6 
  Installing       : libdnf5-cli-5.1.13-1.fc41.x86_64                       3/6 
  Installing       : dnf5-5.1.13-1.fc41.x86_64                              4/6 
  Installing       : sdbus-cpp-1.5.0-1.fc41.x86_64                          5/6 
  Installing       : dnf5-plugins-5.1.13-1.fc41.x86_64                      6/6 
  Running scriptlet: dnf5-plugins-5.1.13-1.fc41.x86_64                      6/6 

Installed:
  dnf5-5.1.13-1.fc41.x86_64              dnf5-plugins-5.1.13-1.fc41.x86_64      
  fmt-10.2.1-3.fc41.x86_64               libdnf5-5.1.13-1.fc41.x86_64           
  libdnf5-cli-5.1.13-1.fc41.x86_64       sdbus-cpp-1.5.0-1.fc41.x86_64          

Complete!
INFO: Switching package manager from dnf to the dnf5 (direct choice)
Finish(bootstrap): installing dnf5 tooling
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1709292777.396084/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.1.1-1.fc40.x86_64
  rpm-sequoia-1.6.0-2.fc40.x86_64
  python3-dnf-4.19.0-1.fc40.noarch
  yum-4.19.0-1.fc40.noarch
  dnf5-5.1.13-1.fc41.x86_64
  dnf5-plugins-5.1.13-1.fc41.x86_64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 fedora                                 100% | 781.9 KiB/s |  21.1 KiB |  00m00s
 Copr repository                        100% |  73.3 KiB/s |   1.5 KiB |  00m00s
 Copr repository                        100% | 179.0 MiB/s |  16.6 MiB |  00m00s
Repositories loaded.
Package                           Arch   Version                    Repository      Size
Installing group/module packages:                                                       
 bash                             x86_64 5.2.26-3.fc40              fedora       8.1 MiB
 bzip2                            x86_64 1.0.8-18.fc40              fedora      91.7 KiB
 coreutils                        x86_64 9.4-6.fc40                 fedora       5.8 MiB
 cpio                             x86_64 2.15-1.fc40                fedora       1.1 MiB
 diffutils                        x86_64 3.10-5.fc40                fedora       1.6 MiB
 fedora-release-common            noarch 41-0.6                     copr_base   19.2 KiB
 findutils                        x86_64 1:4.9.0-8.fc40             fedora       1.5 MiB
 gawk                             x86_64 5.3.0-3.fc40               fedora       1.7 MiB
 glibc-minimal-langpack           x86_64 2.39.9000-4.fc41           copr_base    0.0   B
 grep                             x86_64 3.11-7.fc40                fedora       1.0 MiB
 gzip                             x86_64 1.13-1.fc40                fedora     385.0 KiB
 info                             x86_64 7.1-2.fc40                 fedora     357.8 KiB
 patch                            x86_64 2.7.6-24.fc40              fedora     262.8 KiB
 redhat-rpm-config                noarch 285-1.fc41                 fedora     185.1 KiB
 rpm-build                        x86_64 4.19.1.1-1.fc41            copr_base  173.7 KiB
 sed                              x86_64 4.9-1.fc40                 fedora     861.5 KiB
 shadow-utils                     x86_64 2:4.15.0rc2-1.fc41         fedora       4.1 MiB
 tar                              x86_64 2:1.35-3.fc40              fedora       2.9 MiB
 unzip                            x86_64 6.0-63.fc40                fedora     382.8 KiB
 util-linux                       x86_64 2.40-0.11.rc1.fc41         fedora       3.7 MiB
 which                            x86_64 2.21-41.fc40               fedora      80.2 KiB
 xz                               x86_64 5.4.6-1.fc40               fedora       2.0 MiB
Installing dependencies:                                                                
 alternatives                     x86_64 1.26-3.fc41                copr_base   62.3 KiB
 ansible-srpm-macros              noarch 1-14.fc40                  fedora      35.7 KiB
 audit-libs                       x86_64 4.0-8.fc41                 copr_base  311.3 KiB
 authselect                       x86_64 1.5.0-5.fc41               copr_base  153.6 KiB
 authselect-libs                  x86_64 1.5.0-5.fc41               copr_base  818.3 KiB
 basesystem                       noarch 11-20.fc40                 fedora       0.0   B
 binutils                         x86_64 2.42.50-4.fc41             copr_base   26.6 MiB
 binutils-gold                    x86_64 2.42.50-4.fc41             copr_base    2.0 MiB
 bzip2-libs                       x86_64 1.0.8-18.fc40              fedora      80.7 KiB
 ca-certificates                  noarch 2023.2.62_v7.0.401-6.fc41  copr_base    2.3 MiB
 coreutils-common                 x86_64 9.4-6.fc40                 fedora      11.4 MiB
 cracklib                         x86_64 2.9.11-5.fc40              fedora     238.9 KiB
 crypto-policies                  noarch 20240201-2.git9f501f3.fc41 copr_base  149.3 KiB
 curl                             x86_64 8.6.0-7.fc41               copr_base  734.6 KiB
 cyrus-sasl-lib                   x86_64 2.1.28-19.fc41             copr_base    2.3 MiB
 debugedit                        x86_64 5.0-14.fc40                fedora     199.0 KiB
 dwz                              x86_64 0.15-6.fc41                copr_base  290.9 KiB
 ed                               x86_64 1.20.1-1.fc41              fedora     146.5 KiB
 efi-srpm-macros                  noarch 5-11.fc40                  fedora      40.1 KiB
 elfutils                         x86_64 0.190-6.fc41               copr_base    2.5 MiB
 elfutils-debuginfod-client       x86_64 0.190-6.fc41               copr_base   64.9 KiB
 elfutils-default-yama-scope      noarch 0.190-6.fc41               copr_base    1.8 KiB
 elfutils-libelf                  x86_64 0.190-6.fc41               copr_base    1.0 MiB
 elfutils-libs                    x86_64 0.190-6.fc41               copr_base  642.1 KiB
 fedora-gpg-keys                  noarch 41-0.1                     fedora     125.0 KiB
 fedora-release                   noarch 41-0.6                     copr_base    0.0   B
 fedora-release-identity-basic    noarch 41-0.6                     copr_base  694.0   B
 fedora-repos                     noarch 41-0.1                     fedora       4.9 KiB
 fedora-repos-rawhide             noarch 41-0.1                     fedora       2.2 KiB
 file                             x86_64 5.45-5.fc41                copr_base  103.5 KiB
 file-libs                        x86_64 5.45-5.fc41                copr_base    9.9 MiB
 filesystem                       x86_64 3.18-8.fc40                fedora     106.0   B
 fonts-srpm-macros                noarch 1:2.0.5-14.fc40            fedora      55.3 KiB
 forge-srpm-macros                noarch 0.2.0-3.fc41               copr_base   37.4 KiB
 fpc-srpm-macros                  noarch 1.3-12.fc40                fedora     144.0   B
 gdb-minimal                      x86_64 14.1-9.fc41                copr_base   12.7 MiB
 gdbm                             x86_64 1:1.23-6.fc40              fedora     460.9 KiB
 gdbm-libs                        x86_64 1:1.23-6.fc40              fedora     121.9 KiB
 ghc-srpm-macros                  noarch 1.6.1-5.fc40               fedora     369.0   B
 glibc                            x86_64 2.39.9000-4.fc41           copr_base    6.7 MiB
 glibc-common                     x86_64 2.39.9000-4.fc41           copr_base    1.0 MiB
 glibc-gconv-extra                x86_64 2.39.9000-4.fc41           copr_base    7.8 MiB
 gmp                              x86_64 1:6.3.0-1.fc41             fedora     803.4 KiB
 gnat-srpm-macros                 noarch 6-5.fc40                   fedora       1.0 KiB
 go-srpm-macros                   noarch 3.4.0-2.fc40               fedora      60.6 KiB
 jansson                          x86_64 2.13.1-9.fc41              copr_base   88.3 KiB
 kernel-srpm-macros               noarch 1.0-22.fc40                fedora       1.9 KiB
 keyutils-libs                    x86_64 1.6.3-3.fc40               fedora      54.4 KiB
 krb5-libs                        x86_64 1.21.2-5.fc41              copr_base    2.3 MiB
 libacl                           x86_64 2.3.2-1.fc40               fedora      40.0 KiB
 libarchive                       x86_64 3.7.2-3.fc40               fedora     914.6 KiB
 libattr                          x86_64 2.5.2-3.fc40               fedora      28.5 KiB
 libblkid                         x86_64 2.40-0.11.rc1.fc41         fedora     262.5 KiB
 libbrotli                        x86_64 1.1.0-3.fc41               copr_base  829.5 KiB
 libcap                           x86_64 2.69-3.fc40                fedora     217.2 KiB
 libcap-ng                        x86_64 0.8.4-4.fc41               copr_base   73.1 KiB
 libcom_err                       x86_64 1.47.0-5.fc41              copr_base   67.2 KiB
 libcurl                          x86_64 8.6.0-7.fc41               copr_base  772.8 KiB
 libeconf                         x86_64 0.5.2-3.fc41               copr_base   52.0 KiB
 libevent                         x86_64 2.1.12-12.fc41             copr_base  895.7 KiB
 libfdisk                         x86_64 2.40-0.11.rc1.fc41         fedora     362.9 KiB
 libffi                           x86_64 3.4.4-7.fc40               fedora      81.6 KiB
 libgcc                           x86_64 14.0.1-0.7.fc41            fedora     270.6 KiB
 libgomp                          x86_64 14.0.1-0.7.fc41            fedora     518.0 KiB
 libidn2                          x86_64 2.3.7-1.fc40               fedora     329.1 KiB
 libmount                         x86_64 2.40-0.11.rc1.fc41         fedora     351.8 KiB
 libnghttp2                       x86_64 1.59.0-2.fc41              copr_base  166.1 KiB
 libnsl2                          x86_64 2.0.1-1.fc40               fedora      57.9 KiB
 libpkgconf                       x86_64 2.1.0-1.fc40               fedora      74.2 KiB
 libpsl                           x86_64 0.21.5-3.fc41              copr_base   80.5 KiB
 libpwquality                     x86_64 1.4.5-9.fc41               copr_base  417.8 KiB
 libselinux                       x86_64 3.6-4.fc41                 copr_base  173.0 KiB
 libsemanage                      x86_64 3.6-3.fc41                 copr_base  293.5 KiB
 libsepol                         x86_64 3.6-3.fc40                 fedora     802.0 KiB
 libsmartcols                     x86_64 2.40-0.11.rc1.fc41         fedora     180.4 KiB
 libssh                           x86_64 0.10.6-4.fc41              copr_base  509.3 KiB
 libssh-config                    noarch 0.10.6-4.fc41              copr_base  277.0   B
 libstdc++                        x86_64 14.0.1-0.7.fc41            fedora       2.8 MiB
 libtasn1                         x86_64 4.19.0-6.fc41              copr_base  175.7 KiB
 libtirpc                         x86_64 1.3.4-1.rc2.fc40.2         fedora     202.8 KiB
 libtool-ltdl                     x86_64 2.4.7-10.fc40              fedora      66.2 KiB
 libunistring                     x86_64 1.1-7.fc41                 fedora       1.7 MiB
 libutempter                      x86_64 1.2.1-13.fc40              fedora      57.7 KiB
 libuuid                          x86_64 2.40-0.11.rc1.fc41         fedora      37.4 KiB
 libverto                         x86_64 0.3.2-8.fc41               copr_base   29.5 KiB
 libxcrypt                        x86_64 4.4.36-5.fc40              fedora     262.8 KiB
 libxml2                          x86_64 2.12.5-1.fc41              copr_base    1.7 MiB
 libzstd                          x86_64 1.5.5-5.fc40               fedora     772.0 KiB
 lua-libs                         x86_64 5.4.6-5.fc40               fedora     281.1 KiB
 lua-srpm-macros                  noarch 1-13.fc40                  fedora       1.3 KiB
 lz4-libs                         x86_64 1.9.4-6.fc41               copr_base  129.4 KiB
 mpfr                             x86_64 4.2.1-3.fc40               fedora     832.0 KiB
 ncurses-base                     noarch 6.4-12.20240127.fc40       fedora     326.2 KiB
 ncurses-libs                     x86_64 6.4-12.20240127.fc40       fedora     963.2 KiB
 ocaml-srpm-macros                noarch 9-3.fc40                   fedora       1.9 KiB
 openblas-srpm-macros             noarch 2-16.fc40                  fedora     104.0   B
 openldap                         x86_64 2.6.7-1.fc41               copr_base  635.0 KiB
 openssl-libs                     x86_64 1:3.2.1-2.fc41             copr_base    7.8 MiB
 p11-kit                          x86_64 0.25.3-4.fc40              fedora       2.2 MiB
 p11-kit-trust                    x86_64 0.25.3-4.fc40              fedora     391.4 KiB
 package-notes-srpm-macros        noarch 0.5-11.fc40                fedora       1.6 KiB
 pam                              x86_64 1.6.0-2.fc41               copr_base    1.8 MiB
 pam-libs                         x86_64 1.6.0-2.fc41               copr_base  135.0 KiB
 pcre2                            x86_64 10.42-2.fc40.2             fedora     637.6 KiB
 pcre2-syntax                     noarch 10.42-2.fc40.2             fedora     235.1 KiB
 perl-srpm-macros                 noarch 1-53.fc40                  fedora     861.0   B
 pkgconf                          x86_64 2.1.0-1.fc40               fedora      82.4 KiB
 pkgconf-m4                       noarch 2.1.0-1.fc40               fedora      13.9 KiB
 pkgconf-pkg-config               x86_64 2.1.0-1.fc40               fedora     989.0   B
 popt                             x86_64 1.19-6.fc40                fedora     136.9 KiB
 publicsuffix-list-dafsa          noarch 20240107-3.fc41            copr_base   67.5 KiB
 pyproject-srpm-macros            noarch 1.12.0-1.fc41              copr_base    1.5 KiB
 python-srpm-macros               noarch 3.12-7.fc40                fedora      50.1 KiB
 qt5-srpm-macros                  noarch 5.15.12-3.fc40             fedora     492.0   B
 qt6-srpm-macros                  noarch 6.6.2-1.fc41               fedora     456.0   B
 readline                         x86_64 8.2-8.fc40                 fedora     489.2 KiB
 rpm                              x86_64 4.19.1.1-1.fc41            copr_base    3.0 MiB
 rpm-build-libs                   x86_64 4.19.1.1-1.fc41            copr_base  198.4 KiB
 rpm-libs                         x86_64 4.19.1.1-1.fc41            copr_base  709.9 KiB
 rpm-sequoia                      x86_64 1.6.0-2.fc41               copr_base    2.2 MiB
 rust-srpm-macros                 noarch 26.1-1.fc41                copr_base    4.8 KiB
 setup                            noarch 2.14.5-2.fc40              fedora     720.4 KiB
 sqlite-libs                      x86_64 3.45.1-2.fc40              fedora       1.4 MiB
 systemd-libs                     x86_64 255.3-1.fc40               fedora       1.9 MiB
 util-linux-core                  x86_64 2.40-0.11.rc1.fc41         fedora       1.5 MiB
 xxhash-libs                      x86_64 0.8.2-2.fc40               fedora      88.5 KiB
 xz-libs                          x86_64 5.4.6-1.fc40               fedora     209.8 KiB
 zig-srpm-macros                  noarch 1-2.fc40                   fedora       1.1 KiB
 zip                              x86_64 3.0-40.fc40                fedora     703.2 KiB
 zlib-ng-compat                   x86_64 2.1.6-2.fc40               fedora     134.0 KiB
 zstd                             x86_64 1.5.5-5.fc40               fedora       1.6 MiB
Installing groups:                                                                      
 Buildsystem building group                                                             

Transaction Summary:
 Installing:      153 packages

Total size of inbound packages is 53 MiB. Need to download 0 B.
After this operation 178 MiB will be used (install 178 MiB, remove 0 B).
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>>> Already downloaded
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--------------------------------------------------------------------------------
[153/153] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
Running transaction
Importing PGP key 0xE99D6AD1:
 Userid     : "Fedora (41) <fedora-41-primary@fedoraproject.org>"
 Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary
The key was successfully imported.
Importing PGP key 0xE99D6AD1:
 Userid     : "Fedora (41) <fedora-41-primary@fedoraproject.org>"
 Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary
The key was successfully imported.
Importing PGP key 0xA15B79CC:
 Userid     : "Fedora (40) <fedora-40-primary@fedoraproject.org>"
 Fingerprint: 115DF9AEF857853EE8445D0A0727707EA15B79CC
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary
The key was successfully imported.
[  1/155] Verify package files          100% | 746.0   B/s | 153.0   B |  00m00s
>>> Running pre-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64
>>> Stop pre-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64
[  2/155] Prepare transaction           100% |   4.5 KiB/s | 153.0   B |  00m00s
[  3/155] Installing libgcc-0:14.0.1-0. 100% | 265.9 MiB/s | 272.3 KiB |  00m00s
>>> Running post-install scriptlet: libgcc-0:14.0.1-0.7.fc41.x86_64
>>> Stop post-install scriptlet: libgcc-0:14.0.1-0.7.fc41.x86_64
[  4/155] Installing crypto-policies-0: 100% |  44.4 MiB/s | 181.7 KiB |  00m00s
>>> Running post-install scriptlet: crypto-policies-0:20240201-2.git9f501f3.fc41
>>> Stop post-install scriptlet: crypto-policies-0:20240201-2.git9f501f3.fc41.no
[  5/155] Installing fedora-release-ide 100% |   0.0   B/s | 952.0   B |  00m00s
[  6/155] Installing fedora-gpg-keys-0: 100% |  55.4 MiB/s | 170.1 KiB |  00m00s
[  7/155] Installing fedora-repos-rawhi 100% |   0.0   B/s |   2.4 KiB |  00m00s
[  8/155] Installing fedora-repos-0:41- 100% |   0.0   B/s |   5.7 KiB |  00m00s
[  9/155] Installing fedora-release-com 100% |  22.7 MiB/s |  23.3 KiB |  00m00s
[ 10/155] Installing fedora-release-0:4 100% |   0.0   B/s | 124.0   B |  00m00s
[ 11/155] Installing setup-0:2.14.5-2.f 100% |  64.4 MiB/s | 725.8 KiB |  00m00s
>>> Running post-install scriptlet: setup-0:2.14.5-2.fc40.noarch
>>> Stop post-install scriptlet: setup-0:2.14.5-2.fc40.noarch
[ 12/155] Installing filesystem-0:3.18- 100% |   3.6 MiB/s | 212.4 KiB |  00m00s
[ 13/155] Installing basesystem-0:11-20 100% |   0.0   B/s | 124.0   B |  00m00s
[ 14/155] Installing publicsuffix-list- 100% |   0.0   B/s |  68.3 KiB |  00m00s
[ 15/155] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[ 16/155] Installing rust-srpm-macros-0 100% |   0.0   B/s |   5.5 KiB |  00m00s
[ 17/155] Installing pkgconf-m4-0:2.1.0 100% |   0.0   B/s |  14.3 KiB |  00m00s
[ 18/155] Installing pcre2-syntax-0:10. 100% | 232.0 MiB/s | 237.6 KiB |  00m00s
[ 19/155] Installing ncurses-base-0:6.4 100% | 114.5 MiB/s | 351.6 KiB |  00m00s
[ 20/155] Installing glibc-minimal-lang 100% |   0.0   B/s | 124.0   B |  00m00s
[ 21/155] Installing ncurses-libs-0:6.4 100% | 236.7 MiB/s | 969.7 KiB |  00m00s
>>> Running pre-install scriptlet: glibc-0:2.39.9000-4.fc41.x86_64
>>> Stop pre-install scriptlet: glibc-0:2.39.9000-4.fc41.x86_64
[ 22/155] Installing glibc-0:2.39.9000- 100% | 241.0 MiB/s |   6.7 MiB |  00m00s
>>> Running post-install scriptlet: glibc-0:2.39.9000-4.fc41.x86_64
>>> Stop post-install scriptlet: glibc-0:2.39.9000-4.fc41.x86_64
[ 23/155] Installing bash-0:5.2.26-3.fc 100% | 429.5 MiB/s |   8.2 MiB |  00m00s
>>> Running post-install scriptlet: bash-0:5.2.26-3.fc40.x86_64
>>> Stop post-install scriptlet: bash-0:5.2.26-3.fc40.x86_64
[ 24/155] Installing glibc-common-0:2.3 100% | 204.1 MiB/s |   1.0 MiB |  00m00s
[ 25/155] Installing glibc-gconv-extra- 100% | 271.2 MiB/s |   7.9 MiB |  00m00s
>>> Running post-install scriptlet: glibc-gconv-extra-0:2.39.9000-4.fc41.x86_64
>>> Stop post-install scriptlet: glibc-gconv-extra-0:2.39.9000-4.fc41.x86_64
[ 26/155] Installing zlib-ng-compat-0:2 100% | 131.7 MiB/s | 134.8 KiB |  00m00s
[ 27/155] Installing xz-libs-0:5.4.6-1. 100% | 206.0 MiB/s | 210.9 KiB |  00m00s
[ 28/155] Installing bzip2-libs-0:1.0.8 100% |  79.9 MiB/s |  81.8 KiB |  00m00s
[ 29/155] Installing popt-0:1.19-6.fc40 100% |  70.1 MiB/s | 143.5 KiB |  00m00s
[ 30/155] Installing readline-0:8.2-8.f 100% | 239.9 MiB/s | 491.4 KiB |  00m00s
[ 31/155] Installing libuuid-0:2.40-0.1 100% |   0.0   B/s |  38.5 KiB |  00m00s
[ 32/155] Installing libstdc++-0:14.0.1 100% | 394.7 MiB/s |   2.8 MiB |  00m00s
[ 33/155] Installing libzstd-0:1.5.5-5. 100% | 377.5 MiB/s | 773.2 KiB |  00m00s
[ 34/155] Installing elfutils-libelf-0: 100% | 328.6 MiB/s |   1.0 MiB |  00m00s
[ 35/155] Installing libblkid-0:2.40-0. 100% | 257.5 MiB/s | 263.7 KiB |  00m00s
[ 36/155] Installing gmp-1:6.3.0-1.fc41 100% | 393.4 MiB/s | 805.6 KiB |  00m00s
[ 37/155] Installing libattr-0:2.5.2-3. 100% |   0.0   B/s |  29.5 KiB |  00m00s
[ 38/155] Installing libacl-0:2.3.2-1.f 100% |   0.0   B/s |  40.8 KiB |  00m00s
[ 39/155] Installing libxcrypt-0:4.4.36 100% | 259.3 MiB/s | 265.5 KiB |  00m00s
[ 40/155] Installing lz4-libs-0:1.9.4-6 100% | 127.4 MiB/s | 130.5 KiB |  00m00s
[ 41/155] Installing gdbm-libs-1:1.23-6 100% | 120.7 MiB/s | 123.6 KiB |  00m00s
[ 42/155] Installing libeconf-0:0.5.2-3 100% |   0.0   B/s |  53.7 KiB |  00m00s
[ 43/155] Installing mpfr-0:4.2.1-3.fc4 100% | 407.0 MiB/s | 833.5 KiB |  00m00s
[ 44/155] Installing gawk-0:5.3.0-3.fc4 100% | 345.6 MiB/s |   1.7 MiB |  00m00s
[ 45/155] Installing dwz-0:0.15-6.fc41. 100% | 285.4 MiB/s | 292.3 KiB |  00m00s
[ 46/155] Installing unzip-0:6.0-63.fc4 100% | 377.3 MiB/s | 386.3 KiB |  00m00s
[ 47/155] Installing file-libs-0:5.45-5 100% | 709.3 MiB/s |   9.9 MiB |  00m00s
[ 48/155] Installing file-0:5.45-5.fc41 100% | 102.6 MiB/s | 105.0 KiB |  00m00s
[ 49/155] Installing pcre2-0:10.42-2.fc 100% | 312.0 MiB/s | 639.1 KiB |  00m00s
[ 50/155] Installing grep-0:3.11-7.fc40 100% | 250.8 MiB/s |   1.0 MiB |  00m00s
[ 51/155] Installing xz-0:5.4.6-1.fc40. 100% | 333.8 MiB/s |   2.0 MiB |  00m00s
[ 52/155] Installing libsmartcols-0:2.4 100% | 177.3 MiB/s | 181.5 KiB |  00m00s
[ 53/155] Installing lua-libs-0:5.4.6-5 100% | 275.7 MiB/s | 282.3 KiB |  00m00s
[ 54/155] Installing alternatives-0:1.2 100% |   0.0   B/s |  64.0 KiB |  00m00s
[ 55/155] Installing jansson-0:2.13.1-9 100% |   0.0   B/s |  89.7 KiB |  00m00s
[ 56/155] Installing libsepol-0:3.6-3.f 100% | 392.1 MiB/s | 803.0 KiB |  00m00s
[ 57/155] Installing libselinux-0:3.6-4 100% | 170.2 MiB/s | 174.3 KiB |  00m00s
[ 58/155] Installing sed-0:4.9-1.fc40.x 100% | 212.3 MiB/s | 869.7 KiB |  00m00s
[ 59/155] Installing findutils-1:4.9.0- 100% | 293.2 MiB/s |   1.5 MiB |  00m00s
[ 60/155] Installing libmount-0:2.40-0. 100% | 344.7 MiB/s | 352.9 KiB |  00m00s
[ 61/155] Installing libcap-ng-0:0.8.4- 100% |   0.0   B/s |  75.0 KiB |  00m00s
[ 62/155] Installing audit-libs-0:4.0-8 100% | 306.0 MiB/s | 313.4 KiB |  00m00s
[ 63/155] Installing pam-libs-0:1.6.0-2 100% | 134.2 MiB/s | 137.4 KiB |  00m00s
[ 64/155] Installing libcap-0:2.69-3.fc 100% | 216.7 MiB/s | 221.9 KiB |  00m00s
[ 65/155] Installing systemd-libs-0:255 100% | 386.1 MiB/s |   1.9 MiB |  00m00s
[ 66/155] Installing libcom_err-0:1.47. 100% |   0.0   B/s |  68.3 KiB |  00m00s
[ 67/155] Installing libtasn1-0:4.19.0- 100% | 173.3 MiB/s | 177.5 KiB |  00m00s
[ 68/155] Installing libunistring-0:1.1 100% | 432.7 MiB/s |   1.7 MiB |  00m00s
[ 69/155] Installing libidn2-0:2.3.7-1. 100% | 163.6 MiB/s | 335.0 KiB |  00m00s
[ 70/155] Installing libpsl-0:0.21.5-3. 100% |  79.7 MiB/s |  81.6 KiB |  00m00s
[ 71/155] Installing util-linux-core-0: 100% | 296.6 MiB/s |   1.5 MiB |  00m00s
[ 72/155] Installing libsemanage-0:3.6- 100% | 144.2 MiB/s | 295.3 KiB |  00m00s
[ 73/155] Installing shadow-utils-2:4.1 100% | 167.0 MiB/s |   4.2 MiB |  00m00s
>>> Running pre-install scriptlet: libutempter-0:1.2.1-13.fc40.x86_64
>>> Stop pre-install scriptlet: libutempter-0:1.2.1-13.fc40.x86_64
[ 74/155] Installing libutempter-0:1.2. 100% |  58.3 MiB/s |  59.7 KiB |  00m00s
[ 75/155] Installing tar-2:1.35-3.fc40. 100% | 368.8 MiB/s |   3.0 MiB |  00m00s
[ 76/155] Installing zip-0:3.0-40.fc40. 100% | 345.3 MiB/s | 707.1 KiB |  00m00s
[ 77/155] Installing gdbm-1:1.23-6.fc40 100% | 227.4 MiB/s | 465.8 KiB |  00m00s
[ 78/155] Installing cyrus-sasl-lib-0:2 100% | 381.8 MiB/s |   2.3 MiB |  00m00s
[ 79/155] Installing zstd-0:1.5.5-5.fc4 100% | 411.6 MiB/s |   1.6 MiB |  00m00s
[ 80/155] Installing libfdisk-0:2.40-0. 100% | 355.5 MiB/s | 364.0 KiB |  00m00s
[ 81/155] Installing bzip2-0:1.0.8-18.f 100% |  93.9 MiB/s |  96.2 KiB |  00m00s
[ 82/155] Installing libxml2-0:2.12.5-1 100% | 340.0 MiB/s |   1.7 MiB |  00m00s
[ 83/155] Installing sqlite-libs-0:3.45 100% | 350.3 MiB/s |   1.4 MiB |  00m00s
[ 84/155] Installing ed-0:1.20.1-1.fc41 100% | 145.3 MiB/s | 148.8 KiB |  00m00s
[ 85/155] Installing patch-0:2.7.6-24.f 100% | 258.1 MiB/s | 264.3 KiB |  00m00s
[ 86/155] Installing elfutils-default-y 100% | 408.6 KiB/s |   2.0 KiB |  00m00s
>>> Running post-install scriptlet: elfutils-default-yama-scope-0:0.190-6.fc41.n
>>> Stop post-install scriptlet: elfutils-default-yama-scope-0:0.190-6.fc41.noar
[ 87/155] Installing cpio-0:2.15-1.fc40 100% | 274.9 MiB/s |   1.1 MiB |  00m00s
[ 88/155] Installing diffutils-0:3.10-5 100% | 317.2 MiB/s |   1.6 MiB |  00m00s
[ 89/155] Installing libgomp-0:14.0.1-0 100% | 253.6 MiB/s | 519.4 KiB |  00m00s
[ 90/155] Installing libpkgconf-0:2.1.0 100% |   0.0   B/s |  75.3 KiB |  00m00s
[ 91/155] Installing pkgconf-0:2.1.0-1. 100% |  82.9 MiB/s |  84.9 KiB |  00m00s
[ 92/155] Installing pkgconf-pkg-config 100% |   0.0   B/s |   1.8 KiB |  00m00s
[ 93/155] Installing keyutils-libs-0:1. 100% |   0.0   B/s |  55.8 KiB |  00m00s
[ 94/155] Installing libverto-0:0.3.2-8 100% |  30.5 MiB/s |  31.3 KiB |  00m00s
[ 95/155] Installing libffi-0:3.4.4-7.f 100% |  81.0 MiB/s |  83.0 KiB |  00m00s
[ 96/155] Installing p11-kit-0:0.25.3-4 100% | 313.5 MiB/s |   2.2 MiB |  00m00s
[ 97/155] Installing p11-kit-trust-0:0. 100% |  54.8 MiB/s | 393.1 KiB |  00m00s
>>> Running post-install scriptlet: p11-kit-trust-0:0.25.3-4.fc40.x86_64
>>> Stop post-install scriptlet: p11-kit-trust-0:0.25.3-4.fc40.x86_64
[ 98/155] Installing xxhash-libs-0:0.8. 100% |  87.8 MiB/s |  89.9 KiB |  00m00s
[ 99/155] Installing libbrotli-0:1.1.0- 100% | 270.8 MiB/s | 831.8 KiB |  00m00s
[100/155] Installing libnghttp2-0:1.59. 100% | 163.3 MiB/s | 167.2 KiB |  00m00s
[101/155] Installing libtool-ltdl-0:2.4 100% |  65.7 MiB/s |  67.3 KiB |  00m00s
[102/155] Installing coreutils-common-0 100% | 440.9 MiB/s |  11.5 MiB |  00m00s
[103/155] Installing openssl-libs-1:3.2 100% | 458.4 MiB/s |   7.8 MiB |  00m00s
[104/155] Installing coreutils-0:9.4-6. 100% | 306.0 MiB/s |   5.8 MiB |  00m00s
>>> Running pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc41.n
>>> Stop pre-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc41.noar
[105/155] Installing ca-certificates-0: 100% |   4.2 MiB/s |   2.3 MiB |  00m01s
>>> Running post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc41.
>>> Stop post-install scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc41.noa
[106/155] Installing krb5-libs-0:1.21.2 100% | 286.8 MiB/s |   2.3 MiB |  00m00s
[107/155] Installing libtirpc-0:1.3.4-1 100% | 199.8 MiB/s | 204.6 KiB |  00m00s
[108/155] Installing gzip-0:1.13-1.fc40 100% | 190.7 MiB/s | 390.6 KiB |  00m00s
[109/155] Installing authselect-libs-0: 100% | 203.4 MiB/s | 833.2 KiB |  00m00s
[110/155] Installing authselect-0:1.5.0 100% |  77.1 MiB/s | 157.9 KiB |  00m00s
[111/155] Installing cracklib-0:2.9.11- 100% |  81.5 MiB/s | 250.3 KiB |  00m00s
[112/155] Installing libpwquality-0:1.4 100% | 105.0 MiB/s | 430.1 KiB |  00m00s
[113/155] Installing libnsl2-0:2.0.1-1. 100% |  57.7 MiB/s |  59.0 KiB |  00m00s
[114/155] Installing pam-0:1.6.0-2.fc41 100% | 181.1 MiB/s |   1.8 MiB |  00m00s
[115/155] Installing libssh-0:0.10.6-4. 100% | 249.7 MiB/s | 511.3 KiB |  00m00s
[116/155] Installing libarchive-0:3.7.2 100% | 447.5 MiB/s | 916.6 KiB |  00m00s
[117/155] Installing rpm-sequoia-0:1.6. 100% | 372.9 MiB/s |   2.2 MiB |  00m00s
[118/155] Installing rpm-libs-0:4.19.1. 100% | 347.4 MiB/s | 711.5 KiB |  00m00s
[119/155] Installing libevent-0:2.1.12- 100% | 439.2 MiB/s | 899.5 KiB |  00m00s
[120/155] Installing openldap-0:2.6.7-1 100% | 311.9 MiB/s | 638.8 KiB |  00m00s
[121/155] Installing libcurl-0:8.6.0-7. 100% | 377.9 MiB/s | 773.9 KiB |  00m00s
[122/155] Installing elfutils-libs-0:0. 100% | 314.4 MiB/s | 644.0 KiB |  00m00s
[123/155] Installing elfutils-debuginfo 100% |  65.3 MiB/s |  66.9 KiB |  00m00s
[124/155] Installing binutils-gold-0:2. 100% | 184.6 MiB/s |   2.0 MiB |  00m00s
>>> Running post-install scriptlet: binutils-gold-0:2.42.50-4.fc41.x86_64
>>> Stop post-install scriptlet: binutils-gold-0:2.42.50-4.fc41.x86_64
[125/155] Installing binutils-0:2.42.50 100% | 416.6 MiB/s |  26.7 MiB |  00m00s
>>> Running post-install scriptlet: binutils-0:2.42.50-4.fc41.x86_64
>>> Stop post-install scriptlet: binutils-0:2.42.50-4.fc41.x86_64
[126/155] Installing elfutils-0:0.190-6 100% | 421.5 MiB/s |   2.5 MiB |  00m00s
[127/155] Installing gdb-minimal-0:14.1 100% | 422.1 MiB/s |  12.7 MiB |  00m00s
[128/155] Installing debugedit-0:5.0-14 100% | 197.0 MiB/s | 201.7 KiB |  00m00s
[129/155] Installing rpm-build-libs-0:4 100% | 194.6 MiB/s | 199.2 KiB |  00m00s
[130/155] Installing curl-0:8.6.0-7.fc4 100% |  72.0 MiB/s | 736.9 KiB |  00m00s
>>> Running pre-install scriptlet: rpm-0:4.19.1.1-1.fc41.x86_64
>>> Stop pre-install scriptlet: rpm-0:4.19.1.1-1.fc41.x86_64
[131/155] Installing rpm-0:4.19.1.1-1.f 100% | 184.4 MiB/s |   2.4 MiB |  00m00s
[132/155] Installing efi-srpm-macros-0: 100% |   0.0   B/s |  41.2 KiB |  00m00s
[133/155] Installing lua-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[134/155] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.7 KiB |  00m00s
[135/155] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 732.0   B |  00m00s
[136/155] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 768.0   B |  00m00s
[137/155] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[138/155] Installing package-notes-srpm 100% |   0.0   B/s |   2.0 KiB |  00m00s
[139/155] Installing openblas-srpm-macr 100% |   0.0   B/s | 384.0   B |  00m00s
[140/155] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.2 KiB |  00m00s
[141/155] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[142/155] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[143/155] Installing ghc-srpm-macros-0: 100% |   0.0   B/s | 648.0   B |  00m00s
[144/155] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[145/155] Installing ansible-srpm-macro 100% |   0.0   B/s |  36.2 KiB |  00m00s
[146/155] Installing python-srpm-macros 100% |   0.0   B/s |  51.3 KiB |  00m00s
[147/155] Installing fonts-srpm-macros- 100% |   0.0   B/s |  56.5 KiB |  00m00s
[148/155] Installing go-srpm-macros-0:3 100% |   0.0   B/s |  61.6 KiB |  00m00s
[149/155] Installing forge-srpm-macros- 100% |   0.0   B/s |  38.6 KiB |  00m00s
[150/155] Installing redhat-rpm-config- 100% | 187.0 MiB/s | 191.4 KiB |  00m00s
[151/155] Installing rpm-build-0:4.19.1 100% | 177.6 MiB/s | 181.8 KiB |  00m00s
[152/155] Installing pyproject-srpm-mac 100% |   2.0 MiB/s |   2.1 KiB |  00m00s
[153/155] Installing util-linux-0:2.40- 100% | 196.6 MiB/s |   3.7 MiB |  00m00s
>>> Running post-install scriptlet: util-linux-0:2.40-0.11.rc1.fc41.x86_64
>>> Stop post-install scriptlet: util-linux-0:2.40-0.11.rc1.fc41.x86_64
[154/155] Installing which-0:2.21-41.fc 100% |  80.5 MiB/s |  82.4 KiB |  00m00s
[155/155] Installing info-0:7.1-2.fc40. 100% | 475.0 KiB/s | 358.2 KiB |  00m01s
>>> Running post-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64
>>> Stop post-transaction scriptlet: filesystem-0:3.18-8.fc40.x86_64
>>> Running post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.f
>>> Stop post-transaction scriptlet: ca-certificates-0:2023.2.62_v7.0.401-6.fc41
>>> Running post-transaction scriptlet: authselect-libs-0:1.5.0-5.fc41.x86_64
>>> Stop post-transaction scriptlet: authselect-libs-0:1.5.0-5.fc41.x86_64
>>> Running post-transaction scriptlet: rpm-0:4.19.1.1-1.fc41.x86_64
>>> Stop post-transaction scriptlet: rpm-0:4.19.1.1-1.fc41.x86_64
>>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-4.fc41.x86_64
>>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-4.fc41.x86_64
>>> Running trigger-install scriptlet: info-0:7.1-2.fc40.x86_64
>>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.x86_64
Warning: skipped PGP checks for 58 package(s).
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: alternatives-1.26-3.fc41.x86_64
ansible-srpm-macros-1-14.fc40.noarch
audit-libs-4.0-8.fc41.x86_64
authselect-1.5.0-5.fc41.x86_64
authselect-libs-1.5.0-5.fc41.x86_64
basesystem-11-20.fc40.noarch
bash-5.2.26-3.fc40.x86_64
binutils-2.42.50-4.fc41.x86_64
binutils-gold-2.42.50-4.fc41.x86_64
bzip2-1.0.8-18.fc40.x86_64
bzip2-libs-1.0.8-18.fc40.x86_64
ca-certificates-2023.2.62_v7.0.401-6.fc41.noarch
coreutils-9.4-6.fc40.x86_64
coreutils-common-9.4-6.fc40.x86_64
cpio-2.15-1.fc40.x86_64
cracklib-2.9.11-5.fc40.x86_64
crypto-policies-20240201-2.git9f501f3.fc41.noarch
curl-8.6.0-7.fc41.x86_64
cyrus-sasl-lib-2.1.28-19.fc41.x86_64
debugedit-5.0-14.fc40.x86_64
diffutils-3.10-5.fc40.x86_64
dwz-0.15-6.fc41.x86_64
ed-1.20.1-1.fc41.x86_64
efi-srpm-macros-5-11.fc40.noarch
elfutils-0.190-6.fc41.x86_64
elfutils-debuginfod-client-0.190-6.fc41.x86_64
elfutils-default-yama-scope-0.190-6.fc41.noarch
elfutils-libelf-0.190-6.fc41.x86_64
elfutils-libs-0.190-6.fc41.x86_64
fedora-gpg-keys-41-0.1.noarch
fedora-release-41-0.6.noarch
fedora-release-common-41-0.6.noarch
fedora-release-identity-basic-41-0.6.noarch
fedora-repos-41-0.1.noarch
fedora-repos-rawhide-41-0.1.noarch
file-5.45-5.fc41.x86_64
file-libs-5.45-5.fc41.x86_64
filesystem-3.18-8.fc40.x86_64
findutils-4.9.0-8.fc40.x86_64
fonts-srpm-macros-2.0.5-14.fc40.noarch
forge-srpm-macros-0.2.0-3.fc41.noarch
fpc-srpm-macros-1.3-12.fc40.noarch
gawk-5.3.0-3.fc40.x86_64
gdb-minimal-14.1-9.fc41.x86_64
gdbm-1.23-6.fc40.x86_64
gdbm-libs-1.23-6.fc40.x86_64
ghc-srpm-macros-1.6.1-5.fc40.noarch
glibc-2.39.9000-4.fc41.x86_64
glibc-common-2.39.9000-4.fc41.x86_64
glibc-gconv-extra-2.39.9000-4.fc41.x86_64
glibc-minimal-langpack-2.39.9000-4.fc41.x86_64
gmp-6.3.0-1.fc41.x86_64
gnat-srpm-macros-6-5.fc40.noarch
go-srpm-macros-3.4.0-2.fc40.noarch
gpg-pubkey-a15b79cc-63d04c2c
gpg-pubkey-e99d6ad1-64d2612c
grep-3.11-7.fc40.x86_64
gzip-1.13-1.fc40.x86_64
info-7.1-2.fc40.x86_64
jansson-2.13.1-9.fc41.x86_64
kernel-srpm-macros-1.0-22.fc40.noarch
keyutils-libs-1.6.3-3.fc40.x86_64
krb5-libs-1.21.2-5.fc41.x86_64
libacl-2.3.2-1.fc40.x86_64
libarchive-3.7.2-3.fc40.x86_64
libattr-2.5.2-3.fc40.x86_64
libblkid-2.40-0.11.rc1.fc41.x86_64
libbrotli-1.1.0-3.fc41.x86_64
libcap-2.69-3.fc40.x86_64
libcap-ng-0.8.4-4.fc41.x86_64
libcom_err-1.47.0-5.fc41.x86_64
libcurl-8.6.0-7.fc41.x86_64
libeconf-0.5.2-3.fc41.x86_64
libevent-2.1.12-12.fc41.x86_64
libfdisk-2.40-0.11.rc1.fc41.x86_64
libffi-3.4.4-7.fc40.x86_64
libgcc-14.0.1-0.7.fc41.x86_64
libgomp-14.0.1-0.7.fc41.x86_64
libidn2-2.3.7-1.fc40.x86_64
libmount-2.40-0.11.rc1.fc41.x86_64
libnghttp2-1.59.0-2.fc41.x86_64
libnsl2-2.0.1-1.fc40.x86_64
libpkgconf-2.1.0-1.fc40.x86_64
libpsl-0.21.5-3.fc41.x86_64
libpwquality-1.4.5-9.fc41.x86_64
libselinux-3.6-4.fc41.x86_64
libsemanage-3.6-3.fc41.x86_64
libsepol-3.6-3.fc40.x86_64
libsmartcols-2.40-0.11.rc1.fc41.x86_64
libssh-0.10.6-4.fc41.x86_64
libssh-config-0.10.6-4.fc41.noarch
libstdc++-14.0.1-0.7.fc41.x86_64
libtasn1-4.19.0-6.fc41.x86_64
libtirpc-1.3.4-1.rc2.fc40.2.x86_64
libtool-ltdl-2.4.7-10.fc40.x86_64
libunistring-1.1-7.fc41.x86_64
libutempter-1.2.1-13.fc40.x86_64
libuuid-2.40-0.11.rc1.fc41.x86_64
libverto-0.3.2-8.fc41.x86_64
libxcrypt-4.4.36-5.fc40.x86_64
libxml2-2.12.5-1.fc41.x86_64
libzstd-1.5.5-5.fc40.x86_64
lua-libs-5.4.6-5.fc40.x86_64
lua-srpm-macros-1-13.fc40.noarch
lz4-libs-1.9.4-6.fc41.x86_64
mpfr-4.2.1-3.fc40.x86_64
ncurses-base-6.4-12.20240127.fc40.noarch
ncurses-libs-6.4-12.20240127.fc40.x86_64
ocaml-srpm-macros-9-3.fc40.noarch
openblas-srpm-macros-2-16.fc40.noarch
openldap-2.6.7-1.fc41.x86_64
openssl-libs-3.2.1-2.fc41.x86_64
p11-kit-0.25.3-4.fc40.x86_64
p11-kit-trust-0.25.3-4.fc40.x86_64
package-notes-srpm-macros-0.5-11.fc40.noarch
pam-1.6.0-2.fc41.x86_64
pam-libs-1.6.0-2.fc41.x86_64
patch-2.7.6-24.fc40.x86_64
pcre2-10.42-2.fc40.2.x86_64
pcre2-syntax-10.42-2.fc40.2.noarch
perl-srpm-macros-1-53.fc40.noarch
pkgconf-2.1.0-1.fc40.x86_64
pkgconf-m4-2.1.0-1.fc40.noarch
pkgconf-pkg-config-2.1.0-1.fc40.x86_64
popt-1.19-6.fc40.x86_64
publicsuffix-list-dafsa-20240107-3.fc41.noarch
pyproject-srpm-macros-1.12.0-1.fc41.noarch
python-srpm-macros-3.12-7.fc40.noarch
qt5-srpm-macros-5.15.12-3.fc40.noarch
qt6-srpm-macros-6.6.2-1.fc41.noarch
readline-8.2-8.fc40.x86_64
redhat-rpm-config-285-1.fc41.noarch
rpm-4.19.1.1-1.fc41.x86_64
rpm-build-4.19.1.1-1.fc41.x86_64
rpm-build-libs-4.19.1.1-1.fc41.x86_64
rpm-libs-4.19.1.1-1.fc41.x86_64
rpm-sequoia-1.6.0-2.fc41.x86_64
rust-srpm-macros-26.1-1.fc41.noarch
sed-4.9-1.fc40.x86_64
setup-2.14.5-2.fc40.noarch
shadow-utils-4.15.0rc2-1.fc41.x86_64
sqlite-libs-3.45.1-2.fc40.x86_64
systemd-libs-255.3-1.fc40.x86_64
tar-1.35-3.fc40.x86_64
unzip-6.0-63.fc40.x86_64
util-linux-2.40-0.11.rc1.fc41.x86_64
util-linux-core-2.40-0.11.rc1.fc41.x86_64
which-2.21-41.fc40.x86_64
xxhash-libs-0.8.2-2.fc40.x86_64
xz-5.4.6-1.fc40.x86_64
xz-libs-5.4.6-1.fc40.x86_64
zig-srpm-macros-1-2.fc40.noarch
zip-3.0-40.fc40.x86_64
zlib-ng-compat-2.1.6-2.fc40.x86_64
zstd-1.5.5-5.fc40.x86_64
Start: buildsrpm
Start: rpmbuild -bs
warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1706313600
Wrote: /builddir/build/SRPMS/seaview-5.0-9.fc41.src.rpm

RPM build warnings:
    %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Finish: rpmbuild -bs
cp: preserving permissions for ‘/var/lib/copr-rpmbuild/results/chroot_scan/var/lib/mock/fedora-rawhide-x86_64-1709292777.396084/root/var/log’: No such file or directory
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1709292777.396084/root/var/log/dnf5.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-difvcv9g/seaview/seaview.spec) Config(child) 0 minutes 18 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/seaview-5.0-9.fc41.src.rpm)  Config(fedora-rawhide-x86_64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1709292777.396084/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1709292777.396084/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1709292777.396084/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.19.1.1-1.fc40.x86_64
  rpm-sequoia-1.6.0-2.fc40.x86_64
  python3-dnf-4.19.0-1.fc40.noarch
  yum-4.19.0-1.fc40.noarch
  dnf5-5.1.13-1.fc41.x86_64
  dnf5-plugins-5.1.13-1.fc41.x86_64
Finish: chroot init
Start: build phase for seaview-5.0-9.fc41.src.rpm
Start: build setup for seaview-5.0-9.fc41.src.rpm
warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1706313600
Wrote: /builddir/build/SRPMS/seaview-5.0-9.fc41.src.rpm

RPM build warnings:
    %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Updating and loading repositories:
 Copr repository                        100% | 128.3 KiB/s |   1.5 KiB |  00m00s
 fedora                                 100% | 232.0 KiB/s |  21.1 KiB |  00m00s
Repositories loaded.
Package                     Arch   Version              Repository      Size
Installing:                                                                 
 desktop-file-utils         x86_64 0.26-12.fc41         copr_base  226.0 KiB
 fltk-devel                 x86_64 1.3.8-9.fc41         copr_base   41.8 MiB
 gcc-c++                    x86_64 14.0.1-0.7.fc41      fedora      37.9 MiB
 libXinerama-devel          x86_64 1.1.5-6.fc40         fedora       7.0 KiB
 make                       x86_64 1:4.4.1-6.fc41       copr_base    1.8 MiB
Installing dependencies:                                                    
 abattis-cantarell-vf-fonts noarch 0.301-12.fc41        copr_base  192.7 KiB
 annobin-docs               noarch 12.41-1.fc41         copr_base   95.6 KiB
 annobin-plugin-gcc         x86_64 12.41-1.fc41         copr_base  967.3 KiB
 brotli                     x86_64 1.1.0-3.fc41         copr_base   31.8 KiB
 brotli-devel               x86_64 1.1.0-3.fc41         copr_base   65.6 KiB
 bzip2-devel                x86_64 1.0.8-18.fc40        fedora     309.8 KiB
 cairo                      x86_64 1.18.0-3.fc41        copr_base    1.7 MiB
 cmake-filesystem           x86_64 3.28.2-1.fc41        copr_base    0.0   B
 cpp                        x86_64 14.0.1-0.7.fc41      fedora      34.8 MiB
 default-fonts-core-sans    noarch 4.0-12.fc41          copr_base   11.9 KiB
 emacs-filesystem           noarch 1:29.2-4.fc41        copr_base    0.0   B
 expat                      x86_64 2.6.0-1.fc41         fedora     276.9 KiB
 fltk                       x86_64 1.3.8-9.fc41         copr_base    1.5 MiB
 fontconfig                 x86_64 2.15.0-4.fc41        copr_base  767.3 KiB
 fontconfig-devel           x86_64 2.15.0-4.fc41        copr_base  117.2 KiB
 fonts-filesystem           noarch 1:2.0.5-14.fc40      fedora       0.0   B
 freetype                   x86_64 2.13.2-5.fc41        copr_base  842.6 KiB
 freetype-devel             x86_64 2.13.2-5.fc41        copr_base    7.8 MiB
 gc                         x86_64 8.2.2-6.fc40         fedora     258.7 KiB
 gcc                        x86_64 14.0.1-0.7.fc41      fedora     103.2 MiB
 gcc-plugin-annobin         x86_64 14.0.1-0.7.fc41      fedora      57.1 KiB
 gettext                    x86_64 0.22.4-1.fc41        copr_base    5.2 MiB
 gettext-envsubst           x86_64 0.22.4-1.fc41        copr_base   74.9 KiB
 gettext-libs               x86_64 0.22.4-1.fc41        copr_base  910.0 KiB
 gettext-runtime            x86_64 0.22.4-1.fc41        copr_base  481.3 KiB
 gl-manpages                noarch 1.1-31.20190306.fc41 copr_base  935.5 KiB
 glib2                      x86_64 2.79.1-1.fc41        copr_base   14.3 MiB
 glib2-devel                x86_64 2.79.1-1.fc41        copr_base   15.1 MiB
 glibc-devel                x86_64 2.39.9000-4.fc41     copr_base   37.1 KiB
 glibc-headers-x86          noarch 2.39.9000-4.fc41     copr_base    2.2 MiB
 gnutls                     x86_64 3.8.3-3.fc41         copr_base    3.2 MiB
 google-noto-fonts-common   noarch 20240201-2.fc41      copr_base   17.4 KiB
 google-noto-sans-vf-fonts  noarch 20240201-2.fc41      copr_base    1.2 MiB
 graphite2                  x86_64 1.3.14-15.fc41       copr_base  192.0 KiB
 graphite2-devel            x86_64 1.3.14-15.fc41       copr_base   49.1 KiB
 guile30                    x86_64 3.0.7-12.fc40        fedora      51.5 MiB
 harfbuzz                   x86_64 8.3.0-5.fc41         copr_base    2.6 MiB
 harfbuzz-devel             x86_64 8.3.0-5.fc41         copr_base    5.1 MiB
 harfbuzz-icu               x86_64 8.3.0-5.fc41         copr_base   15.5 KiB
 hwdata                     noarch 0.379-1.fc40         fedora       9.0 MiB
 kernel-headers             x86_64 6.8.0-0.rc6.49.fc41  fedora       6.2 MiB
 libICE                     x86_64 1.1.1-3.fc40         fedora     181.2 KiB
 libICE-devel               x86_64 1.1.1-3.fc40         fedora     261.8 KiB
 libSM                      x86_64 1.2.4-3.fc40         fedora      97.3 KiB
 libSM-devel                x86_64 1.2.4-3.fc40         fedora      18.8 KiB
 libX11                     x86_64 1.8.7-3.fc40         fedora       1.3 MiB
 libX11-common              noarch 1.8.7-3.fc40         fedora       1.1 MiB
 libX11-devel               x86_64 1.8.7-3.fc40         fedora       1.0 MiB
 libX11-xcb                 x86_64 1.8.7-3.fc40         fedora      15.0 KiB
 libXau                     x86_64 1.0.11-6.fc40        fedora      66.9 KiB
 libXau-devel               x86_64 1.0.11-6.fc40        fedora       6.4 KiB
 libXcursor                 x86_64 1.2.1-7.fc40         fedora      49.5 KiB
 libXext                    x86_64 1.3.6-1.fc40         fedora      90.1 KiB
 libXext-devel              x86_64 1.3.6-1.fc40         fedora      98.9 KiB
 libXfixes                  x86_64 6.0.1-3.fc40         fedora      30.3 KiB
 libXft                     x86_64 2.3.8-6.fc41         copr_base  164.5 KiB
 libXft-devel               x86_64 2.3.8-6.fc41         copr_base   31.7 KiB
 libXinerama                x86_64 1.1.5-6.fc40         fedora      19.0 KiB
 libXrender                 x86_64 0.9.11-6.fc40        fedora      50.1 KiB
 libXrender-devel           x86_64 0.9.11-6.fc40        fedora      50.1 KiB
 libXt                      x86_64 1.3.0-3.fc40         fedora     425.9 KiB
 libXt-devel                x86_64 1.3.0-3.fc40         fedora       1.6 MiB
 libXxf86vm                 x86_64 1.1.5-6.fc40         fedora      25.3 KiB
 libb2                      x86_64 0.98.1-11.fc40       fedora      42.2 KiB
 libblkid-devel             x86_64 2.40-0.11.rc1.fc41   fedora      44.9 KiB
 libdrm                     x86_64 2.4.120-3.fc41       copr_base  401.9 KiB
 libffi-devel               x86_64 3.4.4-7.fc40         fedora      33.3 KiB
 libglvnd                   x86_64 1:1.7.0-4.fc41       copr_base  530.4 KiB
 libglvnd-core-devel        x86_64 1:1.7.0-4.fc41       copr_base   40.3 KiB
 libglvnd-devel             x86_64 1:1.7.0-4.fc41       copr_base    2.1 MiB
 libglvnd-egl               x86_64 1:1.7.0-4.fc41       copr_base   68.8 KiB
 libglvnd-gles              x86_64 1:1.7.0-4.fc41       copr_base  106.2 KiB
 libglvnd-glx               x86_64 1:1.7.0-4.fc41       copr_base  605.5 KiB
 libglvnd-opengl            x86_64 1:1.7.0-4.fc41       copr_base  148.8 KiB
 libicu                     x86_64 74.2-1.fc41          copr_base   34.9 MiB
 libicu-devel               x86_64 74.2-1.fc41          copr_base    5.6 MiB
 libjpeg-turbo              x86_64 3.0.2-1.fc41         copr_base  776.9 KiB
 libjpeg-turbo-devel        x86_64 3.0.2-1.fc41         copr_base  352.9 KiB
 libmount-devel             x86_64 2.40-0.11.rc1.fc41   fedora      63.5 KiB
 libmpc                     x86_64 1.3.1-5.fc40         fedora     164.7 KiB
 libpciaccess               x86_64 0.16-12.fc40         fedora      44.6 KiB
 libpng                     x86_64 2:1.6.40-3.fc40      fedora     241.8 KiB
 libpng-devel               x86_64 2:1.6.40-3.fc40      fedora     881.5 KiB
 libselinux-devel           x86_64 3.6-4.fc41           copr_base  126.1 KiB
 libsepol-devel             x86_64 3.6-3.fc40           fedora     120.2 KiB
 libstdc++-devel            x86_64 14.0.1-0.7.fc41      fedora      15.3 MiB
 libuuid-devel              x86_64 2.40-0.11.rc1.fc41   fedora      40.9 KiB
 libwayland-client          x86_64 1.22.0-3.fc40        fedora      58.1 KiB
 libwayland-server          x86_64 1.22.0-3.fc40        fedora      78.6 KiB
 libxcb                     x86_64 1.16-4.fc41          copr_base    1.1 MiB
 libxcb-devel               x86_64 1.16-4.fc41          copr_base    2.7 MiB
 libxcrypt-devel            x86_64 4.4.36-5.fc40        fedora      30.3 KiB
 libxml2-devel              x86_64 2.12.5-1.fc41        copr_base    3.4 MiB
 libxshmfence               x86_64 1.3.2-3.fc40         fedora      15.4 KiB
 mesa-libEGL                x86_64 24.0.0-2.fc40        fedora     279.9 KiB
 mesa-libGL                 x86_64 24.0.0-2.fc40        fedora     453.9 KiB
 mesa-libGLU                x86_64 9.0.3-4.fc41         copr_base  353.8 KiB
 mesa-libGLU-devel          x86_64 9.0.3-4.fc41         copr_base   17.0 KiB
 mesa-libgbm                x86_64 24.0.0-2.fc40        fedora      65.3 KiB
 mesa-libglapi              x86_64 24.0.0-2.fc40        fedora     168.5 KiB
 mpdecimal                  x86_64 2.5.1-9.fc40         fedora     200.9 KiB
 nettle                     x86_64 3.9.1-6.fc40         fedora     790.1 KiB
 pcre2-devel                x86_64 10.42-2.fc40.2       fedora       1.9 MiB
 pcre2-utf16                x86_64 10.42-2.fc40.2       fedora     570.2 KiB
 pcre2-utf32                x86_64 10.42-2.fc40.2       fedora     542.1 KiB
 pixman                     x86_64 0.43.0-3.fc41        copr_base  714.0 KiB
 python-pip-wheel           noarch 24.0-1.fc41          copr_base    1.5 MiB
 python3                    x86_64 3.12.2-2.fc41        copr_base   31.9 KiB
 python3-libs               x86_64 3.12.2-2.fc41        copr_base   41.0 MiB
 python3-packaging          noarch 23.2-4.fc41          copr_base  421.1 KiB
 sysprof-capture-devel      x86_64 46~beta-1.fc41       fedora     252.7 KiB
 tzdata                     noarch 2024a-2.fc40         fedora       1.6 MiB
 xml-common                 noarch 0.6.3-63.fc40        fedora      78.4 KiB
 xorg-x11-proto-devel       noarch 2023.2-4.fc40        fedora       1.7 MiB
 xz-devel                   x86_64 5.4.6-1.fc40         fedora     255.8 KiB
 zlib-ng-compat-devel       x86_64 2.1.6-2.fc40         fedora     103.4 KiB

Transaction Summary:
 Installing:      121 packages

Total size of inbound packages is 128 MiB. Need to download 26 MiB.
After this operation 482 MiB will be used (install 482 MiB, remove 0 B).
[  1/121] make-1:4.4.1-6.fc41.x86_64    100% |   0.0   B/s |   0.0   B |  00m00s
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[  2/121] gcc-0:14.0.1-0.7.fc41.x86_64  100% |   0.0   B/s |   0.0   B |  00m00s
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[  3/121] libmpc-0:1.3.1-5.fc40.x86_64  100% |   0.0   B/s |   0.0   B |  00m00s
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[  4/121] xorg-x11-proto-devel-0:2023.2 100% |   0.0   B/s |   0.0   B |  00m00s
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[  5/121] guile30-0:3.0.7-12.fc40.x86_6 100% |   0.0   B/s |   0.0   B |  00m00s
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[  6/121] libX11-0:1.8.7-3.fc40.x86_64  100% |   0.0   B/s |   0.0   B |  00m00s
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[  7/121] libXext-0:1.3.6-1.fc40.x86_64 100% |   0.0   B/s |   0.0   B |  00m00s
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[  9/121] libXrender-0:0.9.11-6.fc40.x8 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 10/121] libpng-2:1.6.40-3.fc40.x86_64 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 11/121] cpp-0:14.0.1-0.7.fc41.x86_64  100% |   0.0   B/s |   0.0   B |  00m00s
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[ 14/121] gcc-plugin-annobin-0:14.0.1-0 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 15/121] libX11-devel-0:1.8.7-3.fc40.x 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 16/121] libX11-xcb-0:1.8.7-3.fc40.x86 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 17/121] libXext-devel-0:1.3.6-1.fc40. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 18/121] libxcb-devel-0:1.16-4.fc41.x8 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 19/121] libxcb-0:1.16-4.fc41.x86_64   100% |   0.0   B/s |   0.0   B |  00m00s
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[ 20/121] libXau-0:1.0.11-6.fc40.x86_64 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 21/121] annobin-plugin-gcc-0:12.41-1. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 22/121] glibc-devel-0:2.39.9000-4.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 23/121] libxcrypt-devel-0:4.4.36-5.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 24/121] libXau-devel-0:1.0.11-6.fc40. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 25/121] glibc-headers-x86-0:2.39.9000 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 26/121] kernel-headers-0:6.8.0-0.rc6. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 27/121] cmake-filesystem-0:3.28.2-1.f 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 28/121] fontconfig-devel-0:2.15.0-4.f 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 29/121] fontconfig-0:2.15.0-4.fc41.x8 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 30/121] libxml2-devel-0:2.12.5-1.fc41 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 31/121] fonts-filesystem-1:2.0.5-14.f 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 32/121] xml-common-0:0.6.3-63.fc40.no 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 33/121] xz-devel-0:5.4.6-1.fc40.x86_6 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 34/121] zlib-ng-compat-devel-0:2.1.6- 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 35/121] libXft-devel-0:2.3.8-6.fc41.x 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 36/121] libXft-0:2.3.8-6.fc41.x86_64  100% |   0.0   B/s |   0.0   B |  00m00s
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[ 37/121] libXrender-devel-0:0.9.11-6.f 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 38/121] expat-0:2.6.0-1.fc41.x86_64   100% |   0.0   B/s |   0.0   B |  00m00s
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[ 39/121] libpng-devel-2:1.6.40-3.fc40. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 40/121] emacs-filesystem-1:29.2-4.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 41/121] glib2-0:2.79.1-1.fc41.x86_64  100% |   0.0   B/s |   0.0   B |  00m00s
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[ 42/121] annobin-docs-0:12.41-1.fc41.n 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 43/121] libuuid-devel-0:2.40-0.11.rc1 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 44/121] freetype-devel-0:2.13.2-5.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 45/121] brotli-devel-0:1.1.0-3.fc41.x 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 46/121] freetype-0:2.13.2-5.fc41.x86_ 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 47/121] brotli-0:1.1.0-3.fc41.x86_64  100% |   0.0   B/s |   0.0   B |  00m00s
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[ 48/121] gnutls-0:3.8.3-3.fc41.x86_64  100% |   0.0   B/s |   0.0   B |  00m00s
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[ 49/121] nettle-0:3.9.1-6.fc40.x86_64  100% |   0.0   B/s |   0.0   B |  00m00s
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[ 50/121] harfbuzz-devel-0:8.3.0-5.fc41 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 52/121] harfbuzz-0:8.3.0-5.fc41.x86_6 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 53/121] harfbuzz-icu-0:8.3.0-5.fc41.x 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 54/121] libselinux-devel-0:3.6-4.fc41 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 55/121] libmount-devel-0:2.40-0.11.rc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 56/121] libsepol-devel-0:3.6-3.fc40.x 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 57/121] bzip2-devel-0:1.0.8-18.fc40.x 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 58/121] gettext-0:0.22.4-1.fc41.x86_6 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 59/121] gettext-runtime-0:0.22.4-1.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 62/121] default-fonts-core-sans-0:4.0 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 63/121] abattis-cantarell-vf-fonts-0: 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 64/121] google-noto-sans-vf-fonts-0:2 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 65/121] libblkid-devel-0:2.40-0.11.rc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 66/121] pcre2-devel-0:10.42-2.fc40.2. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 67/121] pcre2-utf16-0:10.42-2.fc40.2. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 68/121] pcre2-utf32-0:10.42-2.fc40.2. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 69/121] libicu-0:74.2-1.fc41.x86_64   100% |   0.0   B/s |   0.0   B |  00m00s
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[ 71/121] cairo-0:1.18.0-3.fc41.x86_64  100% |   0.0   B/s |   0.0   B |  00m00s
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[ 72/121] graphite2-devel-0:1.3.14-15.f 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 73/121] graphite2-0:1.3.14-15.fc41.x8 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 74/121] google-noto-fonts-common-0:20 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 75/121] python3-0:3.12.2-2.fc41.x86_6 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 76/121] python3-packaging-0:23.2-4.fc 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 77/121] libffi-devel-0:3.4.4-7.fc40.x 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 78/121] sysprof-capture-devel-0:46~be 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 79/121] pixman-0:0.43.0-3.fc41.x86_64 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 80/121] python3-libs-0:3.12.2-2.fc41. 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 81/121] libb2-0:0.98.1-11.fc40.x86_64 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 82/121] mpdecimal-0:2.5.1-9.fc40.x86_ 100% |   0.0   B/s |   0.0   B |  00m00s
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[ 83/121] tzdata-0:2024a-2.fc40.noarch  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 84/121] python-pip-wheel-0:24.0-1.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 85/121] desktop-file-utils-0:0.26-12. 100% |   6.7 MiB/s |  68.7 KiB |  00m00s
[ 86/121] libXinerama-devel-0:1.1.5-6.f 100% |   1.8 MiB/s |  13.1 KiB |  00m00s
[ 87/121] fltk-0:1.3.8-9.fc41.x86_64    100% |  59.2 MiB/s | 606.1 KiB |  00m00s
[ 88/121] libXinerama-0:1.1.5-6.fc40.x8 100% |   1.7 MiB/s |  14.3 KiB |  00m00s
[ 89/121] fltk-devel-0:1.3.8-9.fc41.x86 100% |  72.5 MiB/s |   3.1 MiB |  00m00s
[ 90/121] libXcursor-0:1.2.1-7.fc40.x86 100% |   2.9 MiB/s |  30.2 KiB |  00m00s
[ 91/121] libXt-devel-0:1.3.0-3.fc40.x8 100% |  21.4 MiB/s | 460.3 KiB |  00m00s
[ 92/121] gcc-c++-0:14.0.1-0.7.fc41.x86 100% | 166.0 MiB/s |  14.1 MiB |  00m00s
[ 93/121] libXt-0:1.3.0-3.fc40.x86_64   100% |   4.6 MiB/s | 177.5 KiB |  00m00s
[ 94/121] libICE-0:1.1.1-3.fc40.x86_64  100% |   3.5 MiB/s |  74.5 KiB |  00m00s
[ 95/121] libSM-0:1.2.4-3.fc40.x86_64   100% |  21.0 MiB/s |  43.0 KiB |  00m00s
[ 96/121] libglvnd-devel-1:1.7.0-4.fc41 100% |  77.0 MiB/s | 157.7 KiB |  00m00s
[ 97/121] libglvnd-1:1.7.0-4.fc41.x86_6 100% |  56.2 MiB/s | 115.1 KiB |  00m00s
[ 98/121] libglvnd-core-devel-1:1.7.0-4 100% |   8.7 MiB/s |  17.9 KiB |  00m00s
[ 99/121] libglvnd-egl-1:1.7.0-4.fc41.x 100% |  17.5 MiB/s |  35.9 KiB |  00m00s
[100/121] libglvnd-gles-1:1.7.0-4.fc41. 100% |  14.5 MiB/s |  29.7 KiB |  00m00s
[101/121] libstdc++-devel-0:14.0.1-0.7. 100% | 302.2 MiB/s |   2.7 MiB |  00m00s
[102/121] libglvnd-glx-1:1.7.0-4.fc41.x 100% |  25.9 MiB/s | 132.8 KiB |  00m00s
[103/121] libglvnd-opengl-1:1.7.0-4.fc4 100% |   9.4 MiB/s |  38.5 KiB |  00m00s
[104/121] mesa-libEGL-0:24.0.0-2.fc40.x 100% |  32.2 MiB/s | 131.9 KiB |  00m00s
[105/121] mesa-libGL-0:24.0.0-2.fc40.x8 100% |  85.9 MiB/s | 175.8 KiB |  00m00s
[106/121] libwayland-client-0:1.22.0-3. 100% |  15.6 MiB/s |  31.9 KiB |  00m00s
[107/121] libwayland-server-0:1.22.0-3. 100% |  39.0 MiB/s |  39.9 KiB |  00m00s
[108/121] libxshmfence-0:1.3.2-3.fc40.x 100% |   5.9 MiB/s |  12.0 KiB |  00m00s
[109/121] mesa-libgbm-0:24.0.0-2.fc40.x 100% |  15.1 MiB/s |  46.5 KiB |  00m00s
[110/121] mesa-libglapi-0:24.0.0-2.fc40 100% |  16.4 MiB/s |  50.3 KiB |  00m00s
[111/121] libXxf86vm-0:1.1.5-6.fc40.x86 100% |   5.8 MiB/s |  17.7 KiB |  00m00s
[112/121] libjpeg-turbo-devel-0:3.0.2-1 100% |  47.8 MiB/s |  97.8 KiB |  00m00s
[113/121] libjpeg-turbo-0:3.0.2-1.fc41. 100% |  73.9 MiB/s | 227.2 KiB |  00m00s
[114/121] mesa-libGLU-devel-0:9.0.3-4.f 100% |   6.1 MiB/s |  12.5 KiB |  00m00s
[115/121] mesa-libGLU-0:9.0.3-4.fc41.x8 100% |  53.0 MiB/s | 162.8 KiB |  00m00s
[116/121] libdrm-0:2.4.120-3.fc41.x86_6 100% | 154.3 MiB/s | 158.0 KiB |  00m00s
[117/121] libICE-devel-0:1.1.1-3.fc40.x 100% |  22.4 MiB/s |  45.9 KiB |  00m00s
[118/121] libSM-devel-0:1.2.4-3.fc40.x8 100% |   3.9 MiB/s |  11.9 KiB |  00m00s
[119/121] libpciaccess-0:0.16-12.fc40.x 100% |   8.6 MiB/s |  26.4 KiB |  00m00s
[120/121] gl-manpages-0:1.1-31.20190306 100% | 347.4 MiB/s |   1.0 MiB |  00m00s
[121/121] hwdata-0:0.379-1.fc40.noarch  100% | 177.6 MiB/s |   1.6 MiB |  00m00s
--------------------------------------------------------------------------------
[121/121] Total                         100% |  77.6 MiB/s |  25.8 MiB |  00m00s
Running transaction
[  1/123] Verify package files          100% | 278.0   B/s | 121.0   B |  00m00s
[  2/123] Prepare transaction           100% |   1.6 KiB/s | 121.0   B |  00m00s
[  3/123] Installing xorg-x11-proto-dev 100% | 292.7 MiB/s |   1.8 MiB |  00m00s
[  4/123] Installing libglvnd-1:1.7.0-4 100% | 519.3 MiB/s | 531.8 KiB |  00m00s
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[ 59/123] Installing nettle-0:3.9.1-6.f 100% | 387.3 MiB/s | 793.3 KiB |  00m00s
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[ 61/123] Installing glib2-0:2.79.1-1.f 100% | 435.1 MiB/s |  14.4 MiB |  00m00s
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>>> Running pre-install scriptlet: xml-common-0:0.6.3-63.fc40.noarch
>>> Stop pre-install scriptlet: xml-common-0:0.6.3-63.fc40.noarch
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>>> Running post-install scriptlet: fontconfig-0:2.15.0-4.fc41.x86_64
>>> Stop post-install scriptlet: fontconfig-0:2.15.0-4.fc41.x86_64
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>>> Running trigger-install scriptlet: redhat-rpm-config-0:285-1.fc41.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:285-1.fc41.noarch
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>>> Running trigger-install scriptlet: redhat-rpm-config-0:285-1.fc41.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:285-1.fc41.noarch
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>>> Running trigger-install scriptlet: redhat-rpm-config-0:285-1.fc41.noarch
>>> Stop trigger-install scriptlet: redhat-rpm-config-0:285-1.fc41.noarch
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>>> Running post-transaction scriptlet: fontconfig-0:2.15.0-4.fc41.x86_64
>>> Stop post-transaction scriptlet: fontconfig-0:2.15.0-4.fc41.x86_64
>>> Running trigger-install scriptlet: glibc-common-0:2.39.9000-4.fc41.x86_64
>>> Stop trigger-install scriptlet: glibc-common-0:2.39.9000-4.fc41.x86_64
>>> Running trigger-install scriptlet: info-0:7.1-2.fc40.x86_64
>>> Stop trigger-install scriptlet: info-0:7.1-2.fc40.x86_64
>>> Running trigger-install scriptlet: glib2-0:2.79.1-1.fc41.x86_64
>>> Stop trigger-install scriptlet: glib2-0:2.79.1-1.fc41.x86_64
>>> Running trigger-install scriptlet: glib2-0:2.79.1-1.fc41.x86_64
>>> Stop trigger-install scriptlet: glib2-0:2.79.1-1.fc41.x86_64
>>> Running trigger-install scriptlet: fontconfig-0:2.15.0-4.fc41.x86_64
>>> Stop trigger-install scriptlet: fontconfig-0:2.15.0-4.fc41.x86_64
Warning: skipped PGP checks for 59 package(s).
Finish: build setup for seaview-5.0-9.fc41.src.rpm
Start: rpmbuild seaview-5.0-9.fc41.src.rpm
warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1706313600
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.KgpDI2
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf seaview
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/seaview_5.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd seaview
+ rm -rf /builddir/build/BUILD/seaview-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/seaview-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #0 (seaview-chris.patch):
+ echo 'Patch #0 (seaview-chris.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .chris --fuzz=0
patching file csrc/dnapars.c
patching file csrc/phylip.c
patching file csrc/phylip.h
patching file csrc/protpars.c
patching file Makefile
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.91TqS8
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd seaview
+ make -j4
g++ -c   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF seaview.cxx
g++ -c   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF custom.cxx
g++ -c   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF use_mase_files.cxx
g++ -c   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF regions.cxx
regions.cxx: In function ‘void save_active_region(SEA_VIEW*)’:
regions.cxx:502:10: warning: variable ‘taille’ set but not used [-Wunused-but-set-variable]
  502 | int tmp, taille;
      |          ^~~~~~
use_mase_files.cxx: In function ‘int read_mase_seqs_header(const char*, char***, char***, char***, char**, char**)’:
use_mase_files.cxx:215:9: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation]
  215 |         while((line[l-1] == ' ' || line[l-1] == '\n') && l>0 ) l--; line[l] = 0;
      |         ^~~~~
use_mase_files.cxx:215:69: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’
  215 |         while((line[l-1] == ' ' || line[l-1] == '\n') && l>0 ) l--; line[l] = 0;
      |                                                                     ^~~~
regions.cxx: In function ‘int create_gblocks_mask(SEA_VIEW*, region*, int, int, int, int, int)’:
regions.cxx:313:9: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  313 |   system(cmd);
      |   ~~~~~~^~~~~
use_mase_files.cxx: In function ‘int read_clustal_align(const char*, char***, char***, char***, char**, char**)’:
use_mase_files.cxx:623:17: warning: this ‘while’ clause does not guard... [-Wmisleading-indentation]
  623 |                 while(*p==' ') p--; *(p+1)=0;
      |                 ^~~~~
use_mase_files.cxx:623:37: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘while’
  623 |                 while(*p==' ') p--; *(p+1)=0;
      |                                     ^
seaview.cxx: In function ‘int delete_selected_seqs(SEA_VIEW*)’:
seaview.cxx:1770:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1770 |         for(i = 0, j = 0; i<  view->tot_seqs; i++)
      |         ^~~
seaview.cxx:1773:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1773 |                 memcpy(view->col_rank , temp_data, new_tot_seqs * sizeof(char *) );
      |                 ^~~~~~
seaview.cxx: In function ‘void colors_callback(Fl_Widget*, void*)’:
seaview.cxx:1924:15: warning: variable ‘item’ set but not used [-Wunused-but-set-variable]
 1924 | Fl_Menu_Item *item;
      |               ^~~~
seaview.cxx: In function ‘void delete_tmp_filename(const char*)’:
seaview.cxx:653:9: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  653 |   system(fname);
      |   ~~~~~~^~~~~~~
seaview.cxx: In function ‘char* run_and_close_native_file_chooser(Fl_Native_File_Chooser*, int)’:
seaview.cxx:2916:45: warning: ignoring return value of ‘int chdir(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2916 |           if( *last_visited_directory )chdir(last_visited_directory);
      |                                        ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
regions.cxx:291:26: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 496 [-Wformat-overflow=]
  291 |   sprintf(cmd, "\"%s\" \"%s\" -p=s -t=%c", q, fname, view->protein?'p':'d');
      |                          ^~                   ~~~~~
In file included from /usr/include/stdio.h:980,
                 from seaview.h:3,
                 from regions.cxx:1:
In function ‘sprintf’,
    inlined from ‘create_gblocks_mask(_SEA_VIEW*, region*, int, int, int, int, int)’ at regions.cxx:291:10:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 16 or more bytes (assuming 4111) into a destination of size 500
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
regions.cxx: In function ‘create_gblocks_mask(_SEA_VIEW*, region*, int, int, int, int, int)’:
regions.cxx:343:42: warning: ‘last’ may be used uninitialized [-Wmaybe-uninitialized]
  343 |         memmove(cmd, last, l + 1 - (last - cmd));
      |                                     ~~~~~^~~~~
regions.cxx:246:56: note: ‘last’ was declared here
  246 |   char base_fname[PATH_MAX], fname[PATH_MAX], *p, *q, *last;
      |                                                        ^~~~
regions.cxx: In function ‘site_mask_creation_dialog(_SEA_VIEW*, position_mask*)’:
regions.cxx:745:10: warning: ‘retval’ may be used uninitialized [-Wmaybe-uninitialized]
  745 |   return retval;
      |          ^~~~~~
regions.cxx:687:15: note: ‘retval’ was declared here
  687 |   const char *retval;
      |               ^~~~~~
g++ -c   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF load_seq.cxx
seaview.cxx: In function ‘help_callback(Fl_Widget*, void*)’:
seaview.cxx:3633:53: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
 3633 |                                          "Help file %s\nnot found in PATH directories nor in current directory", help_file
      |                                                     ^~
seaview.cxx: In function ‘draw_header(Fl_Widget*, _SEA_VIEW*) [clone .part.0]’:
seaview.cxx:1141:23: warning: ‘%7d’ directive writing between 7 and 11 bytes into a region of size 10 [-Wformat-overflow=]
 1141 |   sprintf(site_line, "%7d", view->first_site + view->tot_sites - 1);
      |                       ^~~
seaview.cxx:1141:22: note: directive argument in the range [-2147483648, 2147483646]
 1141 |   sprintf(site_line, "%7d", view->first_site + view->tot_sites - 1);
      |                      ^~~~~
In file included from /usr/include/stdio.h:980,
                 from seaview.h:3,
                 from seaview.cxx:67:
In function ‘sprintf’,
    inlined from ‘draw_header(Fl_Widget*, _SEA_VIEW*) [clone .part.0]’ at seaview.cxx:1141:10:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 8 and 12 bytes into a destination of size 10
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
use_mase_files.cxx: In function ‘read_mase_seqs_header(char const*, char***, char***, char***, char**, char**)’:
use_mase_files.cxx:167:32: warning: ‘lpre’ may be used uninitialized [-Wmaybe-uninitialized]
  167 |                         if(lpre+lseq > curr_max_header) {
      |                            ~~~~^~~~~
use_mase_files.cxx:137:18: note: ‘lpre’ was declared here
  137 | int  l, lenseqs, lpre, lseq, l2, totseqs = -1, want_header, curr_max_header;
      |                  ^~~~
g++ -c   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF align.cxx
use_mase_files.cxx: In function ‘read_phylip_align(char const*, char***, char***, char***, char**, char**)’:
use_mase_files.cxx:521:7: warning: ‘q’ may be used uninitialized [-Wmaybe-uninitialized]
  521 | l = q - seq[totseqs - 1];
      |     ~~^~~~~~~~~~~~~~~~~~
use_mase_files.cxx:466:11: note: ‘q’ was declared here
  466 | char *p, *q;
      |           ^
align.cxx: In function ‘void replace_stars(char*)’:
align.cxx:1302:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1302 |         fread(all, 1, l, in);
      |         ~~~~~^~~~~~~~~~~~~~~
use_mase_files.cxx: In function ‘read_clustal_align(char const*, char***, char***, char***, char**, char**)’:
use_mase_files.cxx:617:61: warning: ‘wid_name’ may be used uninitialized [-Wmaybe-uninitialized]
  617 |                 seqname[curr_spec] = (char *)malloc(wid_name+1);
      |                                                     ~~~~~~~~^~
use_mase_files.cxx:564:16: note: ‘wid_name’ was declared here
  564 |         carac, wid_name;
      |                ^~~~~~~~
use_mase_files.cxx:637:17: warning: ‘curr_max_len’ may be used uninitialized [-Wmaybe-uninitialized]
  637 |                 if(curr_len + l > curr_max_len) {
      |                 ^~
use_mase_files.cxx:563:64: note: ‘curr_max_len’ was declared here
  563 | int i, l, curr_spec, first=TRUE, curr_len, next_len, tot_spec, curr_max_len,
      |                                                                ^~~~~~~~~~~~
use_mase_files.cxx:650:15: warning: ‘l’ may be used uninitialized [-Wmaybe-uninitialized]
  650 |         memcpy(seq[curr_spec]+curr_len, line + wid_name, l);
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
use_mase_files.cxx:563:8: note: ‘l’ was declared here
  563 | int i, l, curr_spec, first=TRUE, curr_len, next_len, tot_spec, curr_max_len,
      |        ^
align.cxx: In function ‘edit_align_callback(Fl_Widget*, void*)’:
align.cxx:944:30: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  944 | sprintf(resname, "msa_name_%d", view->alignment_algorithm + 1);
      |                              ^
In file included from /usr/include/stdio.h:980,
                 from seaview.h:3,
                 from align.cxx:1:
In function ‘sprintf’,
    inlined from ‘edit_align_callback(Fl_Widget*, void*)’ at align.cxx:944:8:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 21 bytes into a destination of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
align.cxx: In function ‘edit_align_callback(Fl_Widget*, void*)’:
align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=]
  991 | sprintf(resname, "msa_opt_args_%d", algonum + 1);
      |                                ^~
In function ‘get_opt_resname(int)’,
    inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32,
    inlined from ‘edit_align_callback(Fl_Widget*, void*)’ at align.cxx:946:21:
align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647]
  991 | sprintf(resname, "msa_opt_args_%d", algonum + 1);
      |                  ^~~~~~~~~~~~~~~~~
In function ‘sprintf’,
    inlined from ‘get_opt_resname(int)’ at align.cxx:991:8,
    inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32,
    inlined from ‘edit_align_callback(Fl_Widget*, void*)’ at align.cxx:946:21:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
g++ -c   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF xfmatpt.cxx
align.cxx: In function ‘align_opt_callback(Fl_Widget*, long)’:
align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 7 [-Wformat-overflow=]
  991 | sprintf(resname, "msa_opt_args_%d", algonum + 1);
      |                                ^~
In function ‘get_opt_resname(int)’,
    inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32,
    inlined from ‘align_opt_callback(Fl_Widget*, long)’ at align.cxx:968:22:
align.cxx:991:18: note: directive argument in the range [1, 2147483647]
  991 | sprintf(resname, "msa_opt_args_%d", algonum + 1);
      |                  ^~~~~~~~~~~~~~~~~
In function ‘sprintf’,
    inlined from ‘get_opt_resname(int)’ at align.cxx:991:8,
    inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32,
    inlined from ‘align_opt_callback(Fl_Widget*, long)’ at align.cxx:968:22:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 24 bytes into a destination of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
align.cxx: In function ‘align_opt_callback(Fl_Widget*, long)’:
align.cxx:973:17: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 5 [-Wformat-overflow=]
  973 |   sprintf(tmp, "%d", reponse);
      |                 ^~
align.cxx:973:16: note: directive argument in the range [0, 2147483646]
  973 |   sprintf(tmp, "%d", reponse);
      |                ^~~~
In function ‘sprintf’,
    inlined from ‘align_opt_callback(Fl_Widget*, long)’ at align.cxx:973:10:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 2 and 11 bytes into a destination of size 5
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’:
align.cxx:825:31: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  825 | sprintf(msa_name, "msa_name_%d", view->alignment_algorithm + 1);
      |                               ^
In function ‘sprintf’,
    inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:825:8:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 21 bytes into a destination of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’:
align.cxx:835:39: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  835 |         sprintf(msa_name, "msa_name_%d", num + 1);
      |                                       ^
In function ‘sprintf’,
    inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:835:9:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 21 bytes into a destination of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’:
align.cxx:837:39: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  837 |         sprintf(msa_name, "msa_name_%d", num);
      |                                       ^
In function ‘sprintf’,
    inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:837:9:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 21 bytes into a destination of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’:
align.cxx:840:39: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  840 |         sprintf(msa_name, "msa_args_%d", num + 1);
      |                                       ^
In function ‘sprintf’,
    inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:840:9:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 21 bytes into a destination of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’:
align.cxx:842:39: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  842 |         sprintf(msa_name, "msa_args_%d", num);
      |                                       ^
In function ‘sprintf’,
    inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:842:9:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 11 and 21 bytes into a destination of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’:
align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=]
  991 | sprintf(resname, "msa_opt_args_%d", algonum + 1);
      |                                ^~
In function ‘get_opt_resname(int)’,
    inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:845:24:
align.cxx:991:18: note: directive argument in the range [-2147483646, 2147483647]
  991 | sprintf(resname, "msa_opt_args_%d", algonum + 1);
      |                  ^~~~~~~~~~~~~~~~~
In function ‘sprintf’,
    inlined from ‘get_opt_resname(int)’ at align.cxx:991:8,
    inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:845:24:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’:
align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=]
  991 | sprintf(resname, "msa_opt_args_%d", algonum + 1);
      |                                ^~
In function ‘get_opt_resname(int)’,
    inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:853:39:
align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483646]
  991 | sprintf(resname, "msa_opt_args_%d", algonum + 1);
      |                  ^~~~~~~~~~~~~~~~~
In function ‘sprintf’,
    inlined from ‘get_opt_resname(int)’ at align.cxx:991:8,
    inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:853:39:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’:
align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=]
  991 | sprintf(resname, "msa_opt_args_%d", algonum + 1);
      |                                ^~
In function ‘get_opt_resname(int)’,
    inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:849:26:
align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483646]
  991 | sprintf(resname, "msa_opt_args_%d", algonum + 1);
      |                  ^~~~~~~~~~~~~~~~~
In function ‘sprintf’,
    inlined from ‘get_opt_resname(int)’ at align.cxx:991:8,
    inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:849:26:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
align.cxx: In function ‘delete_align_callback(Fl_Widget*, void*)’:
align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=]
  991 | sprintf(resname, "msa_opt_args_%d", algonum + 1);
      |                                ^~
In function ‘get_opt_resname(int)’,
    inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32,
    inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:873:21:
align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647]
  991 | sprintf(resname, "msa_opt_args_%d", algonum + 1);
      |                  ^~~~~~~~~~~~~~~~~
In function ‘sprintf’,
    inlined from ‘get_opt_resname(int)’ at align.cxx:991:8,
    inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32,
    inlined from ‘delete_align_callback(Fl_Widget*, void*)’ at align.cxx:873:21:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
use_mase_files.cxx: In function ‘printout(_SEA_VIEW*, char const*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)’:
use_mase_files.cxx:1831:35: warning: ‘lines_per_page’ may be used uninitialized [-Wmaybe-uninitialized]
 1831 |       if( use_pdf && (!firstpage) && (curr_lines + view->tot_seqs + nl > lines_per_page)) {
      |           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
use_mase_files.cxx:1678:32: note: ‘lines_per_page’ was declared here
 1678 |   res_per_line, nl, firstpage, lines_per_page, use_pdf, use_svg, top_margin;
      |                                ^~~~~~~~~~~~~~
use_mase_files.cxx:1767:14: warning: ‘top_margin’ may be used uninitialized [-Wmaybe-uninitialized]
 1767 |       fl_draw(oneline, margin, top_margin);
      |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
use_mase_files.cxx:1678:66: note: ‘top_margin’ was declared here
 1678 |   res_per_line, nl, firstpage, lines_per_page, use_pdf, use_svg, top_margin;
      |                                                                  ^~~~~~~~~~
In function ‘color_pdf_display(_SEA_VIEW*, int (*)(int), char*, int, double, double, int, double, double, int, int)’,
    inlined from ‘printout(_SEA_VIEW*, char const*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)’ at use_mase_files.cxx:1916:34:
use_mase_files.cxx:1980:33: warning: ‘descender’ may be used uninitialized [-Wmaybe-uninitialized]
 1980 |       fl_rectf(xx, y - fontsize + descender, char_width+1, fontsize);
      |                    ~~~~~~~~~~~~~^~~~~~~~~~~
use_mase_files.cxx: In function ‘printout(_SEA_VIEW*, char const*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)’:
use_mase_files.cxx:1689:42: note: ‘descender’ was declared here
 1689 |   double        char_width = fontsize/2, descender, margin = 25;
      |                                          ^~~~~~~~~
use_mase_files.cxx:1766:51: warning: ‘surface’ may be used uninitialized [-Wmaybe-uninitialized]
 1766 |       ((Fl_PDF_or_PS_File_Device*)surface)->origin(0, fontsize);
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
use_mase_files.cxx:1679:22: note: ‘surface’ was declared here
 1679 |   Fl_Surface_Device *surface;
      |                      ^~~~~~~
In file included from /usr/include/string.h:548,
                 from seaview.h:5,
                 from use_mase_files.cxx:1:
In function ‘memset’,
    inlined from ‘printout(_SEA_VIEW*, char const*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)’ at use_mase_files.cxx:1820:8:
/usr/include/bits/string_fortified.h:59:33: warning: ‘vary_pos’ may be used uninitialized [-Wmaybe-uninitialized]
   59 |   return __builtin___memset_chk (__dest, __ch, __len,
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
   60 |                                  __glibc_objsize0 (__dest));
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~
use_mase_files.cxx: In function ‘printout(_SEA_VIEW*, char const*, int, int, Fl_Paged_Device::Page_Format, int, int, int, Fl_Paged_Device::Page_Layout, int)’:
use_mase_files.cxx:1686:8: note: ‘vary_pos’ was declared here
 1686 |   int *vary_pos; /* rang ds alignement de la colonne imprimŽe */
      |        ^~~~~~~~
seaview.cxx: In function ‘goto_callback(Fl_Widget*, void*)’:
seaview.cxx:2745:16: warning: ‘strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation]
 2745 |         strncpy(target, p, l); target[l] = 0; majuscules(target);
      |                ^
seaview.cxx:2743:19: note: length computed here
 2743 |         l = strlen(p);
      |             ~~~~~~^~~
align.cxx: In function ‘calc_msa_command(_SEA_VIEW*, char*, void (*)(char const*, ...))’:
align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=]
  991 | sprintf(resname, "msa_opt_args_%d", algonum + 1);
      |                                ^~
In function ‘get_opt_resname(int)’,
    inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32,
    inlined from ‘calc_msa_command(_SEA_VIEW*, char*, void (*)(char const*, ...))’ at align.cxx:614:24:
align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647]
  991 | sprintf(resname, "msa_opt_args_%d", algonum + 1);
      |                  ^~~~~~~~~~~~~~~~~
In function ‘sprintf’,
    inlined from ‘get_opt_resname(int)’ at align.cxx:991:8,
    inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32,
    inlined from ‘calc_msa_command(_SEA_VIEW*, char*, void (*)(char const*, ...))’ at align.cxx:614:24:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
align.cxx: In function ‘cre_align_menu(_SEA_VIEW*)’:
align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=]
  991 | sprintf(resname, "msa_opt_args_%d", algonum + 1);
      |                                ^~
In function ‘get_opt_resname(int)’,
    inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32,
    inlined from ‘cre_align_menu(_SEA_VIEW*)’ at align.cxx:749:23:
align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647]
  991 | sprintf(resname, "msa_opt_args_%d", algonum + 1);
      |                  ^~~~~~~~~~~~~~~~~
In function ‘sprintf’,
    inlined from ‘get_opt_resname(int)’ at align.cxx:991:8,
    inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32,
    inlined from ‘cre_align_menu(_SEA_VIEW*)’ at align.cxx:749:23:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
align.cxx: In function ‘get_algo_opts(int, char**)’:
align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=]
  991 | sprintf(resname, "msa_opt_args_%d", algonum + 1);
      |                                ^~
In function ‘get_opt_resname(int)’,
    inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32:
align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647]
  991 | sprintf(resname, "msa_opt_args_%d", algonum + 1);
      |                  ^~~~~~~~~~~~~~~~~
In function ‘sprintf’,
    inlined from ‘get_opt_resname(int)’ at align.cxx:991:8,
    inlined from ‘get_algo_opts(int, char**)’ at align.cxx:982:32:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
align.cxx: In function ‘get_opt_resname(int)’:
align.cxx:991:32: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=]
  991 | sprintf(resname, "msa_opt_args_%d", algonum + 1);
      |                                ^~
align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647]
  991 | sprintf(resname, "msa_opt_args_%d", algonum + 1);
      |                  ^~~~~~~~~~~~~~~~~
In function ‘sprintf’,
    inlined from ‘get_opt_resname(int)’ at align.cxx:991:8:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
In file included from /usr/include/string.h:548,
                 from seaview.h:5:
In function ‘memset’,
    inlined from ‘insert_gaps_at(_SEA_VIEW*, int, int, int)’ at seaview.cxx:3691:8:
/usr/include/bits/string_fortified.h:59:33: warning: ‘gapcolor’ may be used uninitialized [-Wmaybe-uninitialized]
   59 |   return __builtin___memset_chk (__dest, __ch, __len,
      |          ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
   60 |                                  __glibc_objsize0 (__dest));
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~
seaview.cxx: In function ‘insert_gaps_at(_SEA_VIEW*, int, int, int)’:
seaview.cxx:3671:8: note: ‘gapcolor’ was declared here
 3671 | int l, gapcolor, *plength;
      |        ^~~~~~~~
seaview.cxx: In function ‘del_gap_only_sites(_SEA_VIEW*)’:
seaview.cxx:1707:23: warning: ‘debut’ may be used uninitialized [-Wmaybe-uninitialized]
 1707 |                 count = position - debut;
      |                 ~~~~~~^~~~~~~~~~~~~~~~~~
seaview.cxx:1686:39: note: ‘debut’ was declared here
 1686 | int position, numseq, allgaps, inrun, debut, count;
      |                                       ^~~~~
align.cxx: In function ‘save_fasta_file_no_gaponly(char*, char**, int, int*, int*)’:
align.cxx:1345:42: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=]
 1345 |                 sprintf(seqname[num], "S_%d", num);
      |                                          ^~
align.cxx:1345:39: note: directive argument in the range [0, 2147483646]
 1345 |                 sprintf(seqname[num], "S_%d", num);
      |                                       ^~~~~~
In function ‘sprintf’,
    inlined from ‘save_fasta_file_no_gaponly(char*, char**, int, int*, int*)’ at align.cxx:1345:10:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 4 and 13 bytes into a destination of size 10
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
align.cxx: In function ‘unalign(_SEA_VIEW*)’:
align.cxx:1415:91: warning: ‘calc_color_function’ may be used uninitialized [-Wmaybe-uninitialized]
 1415 |                                         view->col_rank[num][i] = (char)calc_color_function( res );
      |                                                                        ~~~~~~~~~~~~~~~~~~~^~~~~~~
align.cxx:1387:15: note: ‘calc_color_function’ was declared here
 1387 |         int (*calc_color_function)(int);
      |               ^~~~~~~~~~~~~~~~~~~
use_mase_files.cxx: In function ‘format_conversion(int, char**)’:
use_mase_files.cxx:2369:3: warning: ‘err_message’ may be used uninitialized [-Wmaybe-uninitialized]
 2369 |   if (err_message) {
      |   ^~
use_mase_files.cxx:2171:9: note: ‘err_message’ was declared here
 2171 |   char *err_message, *p;
      |         ^~~~~~~~~~~
use_mase_files.cxx:2270:27: warning: ‘current_seg’ may be used uninitialized [-Wmaybe-uninitialized]
 2270 |         current_seg->next = seg;
      |         ~~~~~~~~~~~~~~~~~~^~~~~
use_mase_files.cxx:2235:20: note: ‘current_seg’ was declared here
 2235 |     list_segments *current_seg;
      |                    ^~~~~~~~~~~
seaview.cxx: In function ‘delete_selected_seqs(_SEA_VIEW*)’:
seaview.cxx:1741:48: warning: ‘temp_data’ may be used uninitialized [-Wmaybe-uninitialized]
 1741 |         if( ! view->sel_seqs[i] ) temp_data[j++] = (void *) view->sequence[i];
      |                                                ^
seaview.cxx:1729:8: note: ‘temp_data’ was declared here
 1729 | void **temp_data;
      |        ^~~~~~~~~
seaview.cxx:1766:47: warning: ‘temp_int’ may be used uninitialized [-Wmaybe-uninitialized]
 1766 |         if( ! view->sel_seqs[i] ) temp_int[j++]= view->each_length[i];
      |                                               ^
seaview.cxx:1731:26: note: ‘temp_int’ was declared here
 1731 | int new_tot_seqs, i, j, *temp_int, numset;
      |                          ^~~~~~~~
align.cxx: In function ‘replace_align_part(_SEA_VIEW*, int, int, char*, int, int, int*, align_choice, char const**)’:
align.cxx:455:83: warning: ‘calc_color_function’ may be used uninitialized [-Wmaybe-uninitialized]
  455 |                                 view->col_rank[num][i] = (char)calc_color_function( res );
      |                                                                ~~~~~~~~~~~~~~~~~~~^~~~~~~
align.cxx:300:7: note: ‘calc_color_function’ was declared here
  300 | int (*calc_color_function)(int);
      |       ^~~~~~~~~~~~~~~~~~~
g++ -c   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF comlines.cxx
xfmatpt.cxx: In function ‘change_comput_params(Fl_Widget*, void*)’:
xfmatpt.cxx:750:24: warning: ‘__sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  750 |         sprintf(tmp,"%d", fdui->identites);
      |                        ^
In file included from /usr/include/stdio.h:980,
                 from seaview.h:3,
                 from matpt.h:3,
                 from xfmatpt.cxx:1:
In function ‘sprintf’,
    inlined from ‘change_comput_params(Fl_Widget*, void*)’ at xfmatpt.cxx:750:9:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 2 and 11 bytes into a destination of size 10
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
seaview.cxx: In function ‘edit_menu_callback(Fl_Widget*, void*)’:
seaview.cxx:2580:17: warning: ‘new_pos’ may be used uninitialized [-Wmaybe-uninitialized]
 2580 |         new_pos += 2;
      |         ~~~~~~~~^~~~
seaview.cxx:2564:30: note: ‘new_pos’ was declared here
 2564 |         int old_total, *tmp, new_pos, i, old_first_seq;
      |                              ^~~~~~~
align.cxx: In function ‘profile_align(_SEA_VIEW*)’:
align.cxx:1281:90: warning: ‘calc_color_function’ may be used uninitialized [-Wmaybe-uninitialized]
 1281 |                                 view->col_rank[table[num]][i] = (char)calc_color_function( res );
      |                                                                       ~~~~~~~~~~~~~~~~~~~^~~~~~~
align.cxx:1108:15: note: ‘calc_color_function’ was declared here
 1108 |         int (*calc_color_function)(int);
      |               ^~~~~~~~~~~~~~~~~~~
align.cxx: In function ‘command_line_align(int, char**)’:
align.cxx:1507:37: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=]
 1507 |     sprintf(opt_name, "msa_opt_args_%d", view->alignment_algorithm + 1);
      |                                     ^~
align.cxx:1507:23: note: directive argument in the range [-2147483647, 2147483647]
 1507 |     sprintf(opt_name, "msa_opt_args_%d", view->alignment_algorithm + 1);
      |                       ^~~~~~~~~~~~~~~~~
In function ‘sprintf’,
    inlined from ‘command_line_align(int, char**)’ at align.cxx:1507:12:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 15 and 25 bytes into a destination of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
g++ -c   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF resource.cxx
seaview.cxx: In function ‘handle_keyboard(_SEA_VIEW*, unsigned int, int)’:
seaview.cxx:4630:9: warning: ‘count_each’ may be used uninitialized [-Wmaybe-uninitialized]
 4630 |         if(count_each == multipl &&
      |         ^~
seaview.cxx:4594:20: note: ‘count_each’ was declared here
 4594 |         int count, count_each, debut, fin, test;
      |                    ^~~~~~~~~~
seaview.cxx:4757:17: warning: ‘count_each’ may be used uninitialized [-Wmaybe-uninitialized]
 4757 |                 if(count_each == multipl &&
      |                 ^~
seaview.cxx:4692:39: note: ‘count_each’ was declared here
 4692 |         int newlength = 0, count = 0, count_each, debut, fin, test;
      |                                       ^~~~~~~~~~
seaview.cxx:4681:9: warning: ‘count_each’ may be used uninitialized [-Wmaybe-uninitialized]
 4681 |         if(count_each == multipl && view->regions != NULL)
      |         ^~
seaview.cxx:4658:13: note: ‘count_each’ was declared here
 4658 |         int count_each;
      |             ^~~~~~~~~~
seaview.cxx:4640:17: warning: ‘count’ may be used uninitialized [-Wmaybe-uninitialized]
 4640 |         new_pos = view->cursor_site - count;
      |         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
seaview.cxx:4594:13: note: ‘count’ was declared here
 4594 |         int count, count_each, debut, fin, test;
      |             ^~~~~
g++ -c   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF nexus.cxx
xfmatpt.cxx: In function ‘really_close(FD_matpt*)’:
xfmatpt.cxx:889:5: warning: ‘free’ called on pointer ‘matpt_10(D)->seq1’ with nonzero offset 1 [-Wfree-nonheap-object]
  889 | free(matpt->seq1 + 1);
      | ~~~~^~~~~~~~~~~~~~~~~
xfmatpt.cxx:890:5: warning: ‘free’ called on pointer ‘matpt_10(D)->seq2’ with nonzero offset 1 [-Wfree-nonheap-object]
  890 | free(matpt->seq2 + 1);
      | ~~~~^~~~~~~~~~~~~~~~~
xfmatpt.cxx: In function ‘show_dot_plot(char*, char*, char*, char*, int, int, int, void*)’:
xfmatpt.cxx:124:21: warning: ‘free’ called on pointer ‘matpt.8_9->seq1’ with nonzero offset 1 [-Wfree-nonheap-object]
  124 |                 free(matpt->seq1+1);
      |                 ~~~~^~~~~~~~~~~~~~~
xfmatpt.cxx:125:21: warning: ‘free’ called on pointer ‘matpt.8_9->seq2’ with nonzero offset 1 [-Wfree-nonheap-object]
  125 |                 free(matpt->seq2+1);
      |                 ~~~~^~~~~~~~~~~~~~~
g++ -c   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF viewasprots.cxx
g++ -c   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF racnuc_fetch.cxx
nexus.cxx: In function ‘next_token(_IO_FILE*)’:
nexus.cxx:155:36: warning: pointer may be used after ‘realloc’ [-Wuse-after-free]
  155 |                         p = q + (p - big_token);
      |                                  ~~^~~~~~~~~~~
nexus.cxx:153:44: note: call to ‘realloc’ here
  153 |                         q = (char *)realloc(big_token, l_token);
      |                                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~
nexus.cxx:173:36: warning: pointer may be used after ‘realloc’ [-Wuse-after-free]
  173 |                         p = q + (p - big_token);
      |                                  ~~^~~~~~~~~~~
nexus.cxx:171:44: note: call to ‘realloc’ here
  171 |                         q = (char *)realloc(big_token, l_token);
      |                                     ~~~~~~~^~~~~~~~~~~~~~~~~~~~
nexus.cxx: In function ‘process_taxa_taxlabels(_IO_FILE*, int)’:
nexus.cxx:357:1: warning: ‘p’ may be used uninitialized [-Wmaybe-uninitialized]
  357 | if(p != NULL && *p != ';') skip_command(in);
      | ^~
nexus.cxx:343:7: note: ‘p’ was declared here
  343 | char *p, **names;
      |       ^
nexus.cxx: In function ‘build_list_pairs(_IO_FILE*, int)’:
nexus.cxx:441:27: warning: ‘next’ may be used uninitialized [-Wmaybe-uninitialized]
  441 |                 next->fin = debut;
      |                 ~~~~~~~~~~^~~~~~~
nexus.cxx:424:30: note: ‘next’ was declared here
  424 | list_segments *list = NULL, *next, *elt;
      |                              ^~~~
g++ -c   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF concatenate.cxx
nexus.cxx: In function ‘process_block_characters(_IO_FILE*, int*, char***, int*, int*)’:
nexus.cxx:685:52: warning: ‘gap’ may be used uninitialized [-Wmaybe-uninitialized]
  685 |                         seqs = process_chars_matrix(in, *nsites, gap,
      |                                ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
  686 |                                 *pntaxa, *taxnames, FALSE, matchchar, missing, *protein);
      |                                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
nexus.cxx:667:19: note: ‘gap’ was declared here
  667 | int interleave=0, gap, matchchar = 0, missing = 0;
      |                   ^~~
g++ -c   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF statistics.cxx
concatenate.cxx: In function ‘concatenate(_SEA_VIEW*, _SEA_VIEW*, bool, bool, bool)’:
concatenate.cxx:124:32: warning: ‘found’ may be used uninitialized [-Wmaybe-uninitialized]
  124 |       if (want_addgaps) found[j] = TRUE;
      |                                ^
concatenate.cxx:100:17: note: ‘found’ was declared here
  100 |   int i, j, l, *found, target_length = target->seq_length;
      |                 ^~~~~
concatenate.cxx:114:25: warning: ‘gaps’ may be used uninitialized [-Wmaybe-uninitialized]
  114 |         add_seq_to_align(target, source->seqname[i], gaps, target_length, no_gui);
      |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
concatenate.cxx:101:9: note: ‘gaps’ was declared here
  101 |   char *gaps;
      |         ^~~~
g++ -c   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF trees.cxx
g++ -c   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF treedraw.cxx
trees.cxx: In function ‘matrix* Obs_Dist(allseq*, model*)’:
trees.cxx:1577:16: warning: variable ‘unc_len’ set but not used [-Wunused-but-set-variable]
 1577 |         phydbl unc_len;
      |                ^~~~~~~
trees.cxx: In function ‘matrix* K80_dist_nogamma(allseq*)’:
trees.cxx:1719:16: warning: variable ‘unc_len’ set but not used [-Wunused-but-set-variable]
 1719 |         phydbl unc_len;
      |                ^~~~~~~
g++ -c   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF addbootstrap.cxx
statistics.cxx: In function ‘geni_act(_SEA_VIEW*)’:
statistics.cxx:366:43: warning: ‘compgroup’ may be used uninitialized [-Wmaybe-uninitialized]
  366 |   double **comp, *compall, compcomp[4], **compgroup, *compgroupall, min[4], max[4];
      |                                           ^~~~~~~~~
statistics.cxx:596:14: warning: ‘compgroupall’ may be used uninitialized [-Wmaybe-uninitialized]
  596 |       sprintf(p, "\n\nGroup %d : %.1f%%", i+1, compgroupall[i]);
      |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
statistics.cxx:366:55: note: ‘compgroupall’ was declared here
  366 |   double **comp, *compall, compcomp[4], **compgroup, *compgroupall, min[4], max[4];
      |                                                       ^~~~~~~~~~~~
In file included from /usr/include/stdio.h:980,
                 from seaview.h:3,
                 from statistics.cxx:1:
In function ‘sprintf’,
    inlined from ‘geni_act(_SEA_VIEW*)’ at statistics.cxx:649:14:
/usr/include/bits/stdio2.h:30:34: warning: ‘titvmin’ may be used uninitialized [-Wmaybe-uninitialized]
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
statistics.cxx: In function ‘geni_act(_SEA_VIEW*)’:
statistics.cxx:367:77: note: ‘titvmin’ was declared here
  367 |   double P, Psum=0., Q, Qsum=0., Pmin=0, Pmax=0, Qmin=0, Qmax=0, titvratio, titvmin, titvmax, freq[16], mat_obs[16], *ti, *tv;
      |                                                                             ^~~~~~~
In function ‘sprintf’,
    inlined from ‘geni_act(_SEA_VIEW*)’ at statistics.cxx:651:14:
/usr/include/bits/stdio2.h:30:34: warning: ‘titvmax’ may be used uninitialized [-Wmaybe-uninitialized]
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
statistics.cxx: In function ‘geni_act(_SEA_VIEW*)’:
statistics.cxx:367:86: note: ‘titvmax’ was declared here
  367 |   double P, Psum=0., Q, Qsum=0., Pmin=0, Pmax=0, Qmin=0, Qmax=0, titvratio, titvmin, titvmax, freq[16], mat_obs[16], *ti, *tv;
      |                                                                                      ^~~~~~~
In function ‘sprintf’,
    inlined from ‘geni_act(_SEA_VIEW*)’ at statistics.cxx:649:14:
/usr/include/bits/stdio2.h:30:34: warning: ‘titvminname1’ may be used uninitialized [-Wmaybe-uninitialized]
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
statistics.cxx: In function ‘geni_act(_SEA_VIEW*)’:
statistics.cxx:369:9: note: ‘titvminname1’ was declared here
  369 |   char *titvminname1, *titvminname2;
      |         ^~~~~~~~~~~~
In function ‘sprintf’,
    inlined from ‘geni_act(_SEA_VIEW*)’ at statistics.cxx:649:14:
/usr/include/bits/stdio2.h:30:34: warning: ‘titvminname2’ may be used uninitialized [-Wmaybe-uninitialized]
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
statistics.cxx: In function ‘geni_act(_SEA_VIEW*)’:
statistics.cxx:369:24: note: ‘titvminname2’ was declared here
  369 |   char *titvminname1, *titvminname2;
      |                        ^~~~~~~~~~~~
trees.cxx: In function ‘void run_phyml_callback(Fl_Widget*, void*)’:
trees.cxx:1297:16: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1297 |           fread(bootstrap_trees, l, 1, in);
      |           ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
trees.cxx: In function ‘void command_line_phylogeny(int, char**)’:
trees.cxx:2790:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2790 |       fread(utree, s, 1, in);
      |       ~~~~~^~~~~~~~~~~~~~~~~
trees.cxx: In function ‘parsimony_with_bootstrap(__AllSeq*, char**, char**, int, int, int, int*, int, int, Fl_Box*, int*, dnapars_S_option, int, float, int*, char**)’:
trees.cxx:2401:25: warning: pointer ‘bootstrap_trees_73’ used after ‘realloc’ [-Wuse-after-free]
 2401 |           q = tmpc + (q - bootstrap_trees);
      |                       ~~^~~~~~~~~~~~~~~~~
trees.cxx:2400:38: note: call to ‘realloc’ here
 2400 |           char *tmpc = (char*)realloc(bootstrap_trees, lbtrees + 1);
      |                               ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
trees.cxx: In function ‘run_phyml_callback(Fl_Widget*, void*)’:
trees.cxx:1278:30: warning: pointer ‘b_tree_338’ used after ‘realloc’ [-Wuse-after-free]
 1278 |               q = tree2 + (q - b_tree);
      |                            ~~^~~~~~~~
trees.cxx:1277:38: note: call to ‘realloc’ here
 1277 |               tree2 = (char *)realloc(b_tree, l + 1);
      |                               ~~~~~~~^~~~~~~~~~~~~~~
g++ -c   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF least_squares_brl.cxx
least_squares_brl.cxx: In function ‘tree_btos(int**, int, double*, double*, double*, char**, noeud2**)’:
least_squares_brl.cxx:373:41: warning: ‘tax1’ may be used uninitialized [-Wmaybe-uninitialized]
  373 |                 p1 = bottomnode(arbre_s[tax1]);
      |                                         ^~~~
least_squares_brl.cxx:310:48: note: ‘tax1’ was declared here
  310 |         int           notuv, i, j, k, sommebi, tax1, tax2, n1=0, n2=0, n3=0, cpt1=-1;
      |                                                ^~~~
least_squares_brl.cxx:374:41: warning: ‘tax2’ may be used uninitialized [-Wmaybe-uninitialized]
  374 |                 p2 = bottomnode(arbre_s[tax2]);
      |                                         ^~~~
least_squares_brl.cxx:310:54: note: ‘tax2’ was declared here
  310 |         int           notuv, i, j, k, sommebi, tax1, tax2, n1=0, n2=0, n3=0, cpt1=-1;
      |                                                      ^~~~
least_squares_brl.cxx:349:17: warning: ‘sommebi’ may be used uninitialized [-Wmaybe-uninitialized]
  349 |                 if (sommebi == 2) {
      |                 ^~
least_squares_brl.cxx:310:39: note: ‘sommebi’ was declared here
  310 |         int           notuv, i, j, k, sommebi, tax1, tax2, n1=0, n2=0, n3=0, cpt1=-1;
      |                                       ^~~~~~~
addbootstrap.cxx: In function ‘compute_consensus_tree(char**, int**, int)’:
addbootstrap.cxx:895:7: warning: ‘k’ may be used uninitialized [-Wmaybe-uninitialized]
  895 |       if (k < height) { // columns were not all identical, try columns on 0-side of branch i
      |       ^~
addbootstrap.cxx:853:13: note: ‘k’ was declared here
  853 |   int i, j, k, l, w, word, restbranches, j1;
      |             ^
g++ -c   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF pseudoterminal.cxx
pseudoterminal.cxx: In function ‘int run_external_prog_in_pseudoterm(char*, const char*, const char*)’:
pseudoterminal.cxx:342:32: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  342 |                         freopen(dialogfname, "r", stdin);
      |                         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
pseudoterminal.cxx:344:24: warning: ignoring return value of ‘FILE* freopen(const char*, const char*, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  344 |                 freopen(slavename, "a", stderr);
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
g++ -c   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF unrooted.cxx
trees.cxx: In function ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’:
trees.cxx:2375:54: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=]
 2375 |                   sprintf(tmp, "Bootstrap replicate: %d", j + 1);
      |                                                      ^~
In function ‘parsimony_with_bootstrap(__AllSeq*, char**, char**, int, int, int, int*, int, int, Fl_Box*, int*, dnapars_S_option, int, float, int*, char**)’,
    inlined from ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’ at trees.cxx:2063:36:
trees.cxx:2375:32: note: directive argument in the range [1, 2147483647]
 2375 |                   sprintf(tmp, "Bootstrap replicate: %d", j + 1);
      |                                ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:980,
                 from seaview.h:3,
                 from trees.cxx:6:
In function ‘sprintf’,
    inlined from ‘parsimony_with_bootstrap(__AllSeq*, char**, char**, int, int, int, int*, int, int, Fl_Box*, int*, dnapars_S_option, int, float, int*, char**)’ at trees.cxx:2375:12,
    inlined from ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’ at trees.cxx:2063:36:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 23 and 32 bytes into a destination of size 30
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
trees.cxx: In function ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’:
trees.cxx:2069:57: warning: ‘ best trees, ’ directive writing 13 bytes into a region of size between 12 and 21 [-Wformat-overflow=]
 2069 |       if (count_best > 1) sprintf(best, "consensus of %d best trees, ", count_best);
      |                                                         ^~~~~~~~~~~~~
In function ‘sprintf’,
    inlined from ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’ at trees.cxx:2069:34:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 28 and 37 bytes into a destination of size 35
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
In function ‘parsimony_with_bootstrap(__AllSeq*, char**, char**, int, int, int, int*, int, int, Fl_Box*, int*, dnapars_S_option, int, float, int*, char**)’,
    inlined from ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’ at trees.cxx:2063:36:
trees.cxx:2420:41: warning: ‘all_best’ may be used uninitialized [-Wmaybe-uninitialized]
 2420 |   if (count > 1) tree = add_equally_best(tree, all_best, count);
      |                         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
trees.cxx: In function ‘run_parsimony_method(_SEA_VIEW*, int, char const*, int, int, int, int, Fl_Box*, dnapars_S_option, char const**, float, int, char**, void (*)(char const*, ...))’:
trees.cxx:2353:40: note: ‘all_best’ was declared here
 2353 |         char *tree, *newtree, *p, *q, *all_best, *bootstrap_trees = NULL;
      |                                        ^~~~~~~~
In file included from /usr/include/FL/Fl_Return_Button.H:24,
                 from seaview.h:18:
In member function ‘Fl_Button::value() const’,
    inlined from ‘parsimony_dialog(_SEA_VIEW*)’ at trees.cxx:2259:26:
/usr/include/FL/Fl_Button.H:102:30: warning: ‘thorough_b’ may be used uninitialized [-Wmaybe-uninitialized]
  102 |   char value() const {return value_;}
      |                              ^~~~~~
trees.cxx: In function ‘parsimony_dialog(_SEA_VIEW*)’:
trees.cxx:2165:20: note: ‘thorough_b’ was declared here
 2165 |   Fl_Round_Button *thorough_b, *less_thorough_b;
      |                    ^~~~~~~~~~
In member function ‘Fl_Button::value() const’,
    inlined from ‘parsimony_dialog(_SEA_VIEW*)’ at trees.cxx:2260:36:
/usr/include/FL/Fl_Button.H:102:30: warning: ‘less_thorough_b’ may be used uninitialized [-Wmaybe-uninitialized]
  102 |   char value() const {return value_;}
      |                              ^~~~~~
trees.cxx: In function ‘parsimony_dialog(_SEA_VIEW*)’:
trees.cxx:2165:33: note: ‘less_thorough_b’ was declared here
 2165 |   Fl_Round_Button *thorough_b, *less_thorough_b;
      |                                 ^~~~~~~~~~~~~~~
In file included from /usr/include/FL/Fl_Input.H:25,
                 from seaview.h:16:
In member function ‘Fl_Input_::value() const’,
    inlined from ‘parsimony_dialog(_SEA_VIEW*)’ at trees.cxx:2262:22:
/usr/include/FL/Fl_Input_.H:244:37: warning: ‘w_best’ may be used uninitialized [-Wmaybe-uninitialized]
  244 |   const char* value() const {return value_;}
      |                                     ^~~~~~
trees.cxx: In function ‘parsimony_dialog(_SEA_VIEW*)’:
trees.cxx:2166:17: note: ‘w_best’ was declared here
 2166 |   Fl_Int_Input *w_best;
      |                 ^~~~~~
g++ -c   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF pdf_or_ps.cxx
unrooted.cxx: In function ‘hit try_angle_draw(float, int*, int*, float*, int, int, int, int)’:
unrooted.cxx:634:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  634 |         if(x2 > xmax) xmax = x2; if(x3 > xmax) xmax = x3; if(x4 > xmax) xmax = x4;
      |         ^~
unrooted.cxx:634:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  634 |         if(x2 > xmax) xmax = x2; if(x3 > xmax) xmax = x3; if(x4 > xmax) xmax = x4;
      |                                  ^~
unrooted.cxx:635:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  635 |         if(x2 < xmin) xmin = x2; if(x3 < xmin) xmin = x3; if(x4 < xmin) xmin = x4;
      |         ^~
unrooted.cxx:635:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  635 |         if(x2 < xmin) xmin = x2; if(x3 < xmin) xmin = x3; if(x4 < xmin) xmin = x4;
      |                                  ^~
unrooted.cxx:636:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  636 |         if(y2 > ymax) ymax = y2; if(y3 > ymax) ymax = y3; if(y4 > ymax) ymax = y4;
      |         ^~
unrooted.cxx:636:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  636 |         if(y2 > ymax) ymax = y2; if(y3 > ymax) ymax = y3; if(y4 > ymax) ymax = y4;
      |                                  ^~
unrooted.cxx:637:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  637 |         if(y2 < ymin) ymin = y2; if(y3 < ymin) ymin = y3; if(y4 < ymin) ymin = y4;
      |         ^~
unrooted.cxx:637:34: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  637 |         if(y2 < ymin) ymin = y2; if(y3 < ymin) ymin = y3; if(y4 < ymin) ymin = y4;
      |                                  ^~
g++ -c   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF svg.cxx
trees.cxx: In function ‘run_distance_method(_SEA_VIEW*, int, int, int, int, int, Fl_Box*, char const*, int, char const*, char const*, int, void (*)(char const*, ...), int, int)’:
trees.cxx:520:24: warning: ‘display_tree’ may be used uninitialized [-Wmaybe-uninitialized]
  520 |                 return display_tree;
      |                        ^~~~~~~~~~~~
trees.cxx:461:15: note: ‘display_tree’ was declared here
  461 |         char *display_tree, *bootstrap_trees = NULL, *err_mess, tree_label[100]="";
      |               ^~~~~~~~~~~~
trees.cxx: In function ‘run_phyml_callback(Fl_Widget*, void*)’:
trees.cxx:1177:56: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 995 [-Wformat-overflow=]
 1177 |                    sprintf(args + strlen(args), " -u \"%s\"", tmp);
      |                                                        ^~     ~~~
In function ‘sprintf’,
    inlined from ‘run_phyml_callback(Fl_Widget*, void*)’ at trees.cxx:1177:13:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 7 and 4102 bytes into a destination of size 1000
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
unrooted.cxx: In function ‘set_angles_noeuds(_bignoeud*, _bignoeud*, double, double*, double)’:
unrooted.cxx:1121:48: warning: ‘poids1’ may be used uninitialized [-Wmaybe-uninitialized]
 1121 |                 debut->position.angle = (poids1*angle1 + poids2*angle2)/(poids1+poids2);
      |                                          ~~~~~~^~~~~~~
unrooted.cxx:1080:20: note: ‘poids1’ was declared here
 1080 |         int poids, poids1, poids2;
      |                    ^~~~~~
unrooted.cxx:1121:64: warning: ‘poids2’ may be used uninitialized [-Wmaybe-uninitialized]
 1121 |                 debut->position.angle = (poids1*angle1 + poids2*angle2)/(poids1+poids2);
      |                                                          ~~~~~~^~~~~~~
unrooted.cxx:1080:28: note: ‘poids2’ was declared here
 1080 |         int poids, poids1, poids2;
      |                            ^~~~~~
unrooted.cxx:1128:16: warning: ‘poids’ may be used uninitialized [-Wmaybe-uninitialized]
 1128 |         return poids;
      |                ^~~~~
unrooted.cxx:1080:13: note: ‘poids’ was declared here
 1080 |         int poids, poids1, poids2;
      |             ^~~~~
treedraw.cxx: In function ‘count_node(noeud*, noeud*)’:
treedraw.cxx:3305:15: warning: argument 2 null where non-null expected [-Wnonnull]
 3305 |     if (strcmp(centre->nom, target1) == 0 || strcmp(centre->nom, target2) == 0 || strcmp(centre->nom, target3) == 0) {
      |         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
In file included from seaview.h:5,
                 from treedraw.h:4,
                 from treedraw.cxx:18:
/usr/include/string.h:156:12: note: in a call to function ‘strcmp’ declared ‘nonnull’
  156 | extern int strcmp (const char *__s1, const char *__s2)
      |            ^~~~~~
treedraw.cxx:3305:52: warning: argument 2 null where non-null expected [-Wnonnull]
 3305 |     if (strcmp(centre->nom, target1) == 0 || strcmp(centre->nom, target2) == 0 || strcmp(centre->nom, target3) == 0) {
      |                                              ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/usr/include/string.h:156:12: note: in a call to function ‘strcmp’ declared ‘nonnull’
  156 | extern int strcmp (const char *__s1, const char *__s2)
      |            ^~~~~~
treedraw.cxx:3305:89: warning: argument 2 null where non-null expected [-Wnonnull]
 3305 |     if (strcmp(centre->nom, target1) == 0 || strcmp(centre->nom, target2) == 0 || strcmp(centre->nom, target3) == 0) {
      |                                                                                   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
/usr/include/string.h:156:12: note: in a call to function ‘strcmp’ declared ‘nonnull’
  156 | extern int strcmp (const char *__s1, const char *__s2)
      |            ^~~~~~
g++ -c   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF threads.cxx
trees.cxx: In function ‘command_line_phylogeny(int, char**)’:
trees.cxx:2838:3: warning: ‘tree’ may be used uninitialized [-Wmaybe-uninitialized]
 2838 |   if (tree) {
      |   ^~
trees.cxx:2741:9: note: ‘tree’ was declared here
 2741 |   char *tree, *p;
      |         ^~~~
g++ -c   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF tbe.cxx
tbe.cxx: In function ‘TBE_Compute(char*, char*)’:
tbe.cxx:85:16: warning: pointer ‘ref_branches_65’ used after ‘free’ [-Wuse-after-free]
   85 |   TBE_PrintTree(newtree,fd_reftree,ref_branches, nboot);
      |   ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tbe.cxx:83:7: note: call to ‘free’ here
   83 |   free(ref_branches);
      |   ~~~~^~~~~~~~~~~~~~
g++ -c   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF treerecs_draw.cxx
g++ -c  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I.  -Icsrc  -DDEFAULT_HELPFILE=\"/usr/share/doc/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -DNO_PDF FL/Fl_SVG_Image.cxx
gcc -c  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -Icsrc csrc/raa_acnuc.c
csrc/raa_acnuc.c: In function ‘raa_bit1’:
csrc/raa_acnuc.c:1083:7: warning: variable ‘reponse’ set but not used [-Wunused-but-set-variable]
 1083 | char *reponse;
      |       ^~~~~~~
csrc/raa_acnuc.c: In function ‘raa_bit0’:
csrc/raa_acnuc.c:1093:7: warning: variable ‘reponse’ set but not used [-Wunused-but-set-variable]
 1093 | char *reponse;
      |       ^~~~~~~
csrc/raa_acnuc.c: In function ‘raa_copylist’:
csrc/raa_acnuc.c:1114:7: warning: variable ‘reponse’ set but not used [-Wunused-but-set-variable]
 1114 | char *reponse;
      |       ^~~~~~~
csrc/raa_acnuc.c: In function ‘raa_zerolist’:
csrc/raa_acnuc.c:1124:7: warning: variable ‘reponse’ set but not used [-Wunused-but-set-variable]
 1124 | char *reponse;
      |       ^~~~~~~
csrc/raa_acnuc.c: In function ‘raa_setliststate’:
csrc/raa_acnuc.c:1134:7: warning: variable ‘reponse’ set but not used [-Wunused-but-set-variable]
 1134 | char *reponse, str_type[3];
      |       ^~~~~~~
treerecs_draw.cxx: In function ‘void treerecs_dialog(Fl_Widget*, void*)’:
treerecs_draw.cxx:489:20: warning: unused variable ‘recphylowml_window’ [-Wunused-variable]
  489 |         Fl_Window* recphylowml_window =
      |                    ^~~~~~~~~~~~~~~~~~
treerecs_draw.cxx:455:9: warning: unused variable ‘status’ [-Wunused-variable]
  455 |     int status =
      |         ^~~~~~
treerecs_draw.cxx: In member function ‘virtual void Fl_SVG_Box::draw()’:
treerecs_draw.cxx:654:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  654 |     while(i < svgtexts_size){
      |           ~~^~~~~~~~~~~~~~~
treerecs_draw.cxx: In constructor ‘Fl_SVG_Box::Fl_SVG_Box(int, int, int, int, const char*)’:
treerecs_draw.cxx:738:10: warning: ‘Fl_SVG_Box::zoom’ will be initialized after [-Wreorder]
  738 |   double zoom;
      |          ^~~~
treerecs_draw.cxx:736:10: warning:   ‘double Fl_SVG_Box::svg_shift_x’ [-Wreorder]
  736 |   double svg_shift_x;
      |          ^~~~~~~~~~~
treerecs_draw.cxx:686:13: warning:   when initialized here [-Wreorder]
  686 |   FL_EXPORT Fl_SVG_Box(int x, int y, int w, int h, const char* filename) :
      |             ^~~~~~~~~~
treerecs_draw.cxx:737:10: warning: ‘Fl_SVG_Box::svg_shift_y’ will be initialized after [-Wreorder]
  737 |   double svg_shift_y;
      |          ^~~~~~~~~~~
treerecs_draw.cxx:733:16: warning:   ‘unsigned int Fl_SVG_Box::svgtexts_size’ [-Wreorder]
  733 |   unsigned int svgtexts_size;
      |                ^~~~~~~~~~~~~
treerecs_draw.cxx:686:13: warning:   when initialized here [-Wreorder]
  686 |   FL_EXPORT Fl_SVG_Box(int x, int y, int w, int h, const char* filename) :
      |             ^~~~~~~~~~
treerecs_draw.cxx: In destructor ‘virtual Fl_SVG_Box::~Fl_SVG_Box()’:
treerecs_draw.cxx:722:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  722 |     for(int i = 0; i < svgtexts_size ; i++) {
      |                    ~~^~~~~~~~~~~~~~~
treerecs_draw.cxx: In constructor ‘SVG_View_data::SVG_View_data()’:
treerecs_draw.cxx:762:15: warning: ‘SVG_View_data::reconciliation_score_message’ will be initialized after [-Wreorder]
  762 |   const char* reconciliation_score_message;
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -c  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -Icsrc csrc/parser.c
treerecs_draw.cxx:759:9: warning:   ‘float SVG_View_data::total_cost’ [-Wreorder]
  759 |   float total_cost;
      |         ^~~~~~~~~~
treerecs_draw.cxx:764:3: warning:   when initialized here [-Wreorder]
  764 |   SVG_View_data() :
      |   ^~~~~~~~~~~~~
FL/Fl_SVG_Image.cxx: In function ‘svg_inflate(char const*)’:
FL/Fl_SVG_Image.cxx:87:20: warning: pointer ‘out_25’ used after ‘realloc’ [-Wuse-after-free]
   87 |       p = tmp + (p - out);
      |                  ~~^~~~~
FL/Fl_SVG_Image.cxx:86:33: note: call to ‘realloc’ here
   86 |       char *tmp = (char*)realloc(out, out_size + 1);
      |                          ~~~~~~~^~~~~~~~~~~~~~~~~~~
gcc -c  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -Icsrc csrc/md5.c
csrc/md5.c:200:34: warning: argument 1 of type ‘uint32[4]’ {aka ‘unsigned int[4]’} with mismatched bound [-Warray-parameter=]
  200 | static void MD5_Transform(uint32 buf[4], uint32 const in[16])
      |                           ~~~~~~~^~~~~~
csrc/md5.c:47:35: note: previously declared as ‘uint32 *’ {aka ‘unsigned int *’}
   47 | static void MD5_Transform(uint32 *buf, uint32 const *in);
      |                           ~~~~~~~~^~~
csrc/md5.c:200:55: warning: argument 2 of type ‘const uint32[16]’ {aka ‘const unsigned int[16]’} with mismatched bound [-Warray-parameter=]
  200 | static void MD5_Transform(uint32 buf[4], uint32 const in[16])
      |                                          ~~~~~~~~~~~~~^~~~~~
csrc/md5.c:47:54: note: previously declared as ‘const uint32 *’ {aka ‘const unsigned int *’}
   47 | static void MD5_Transform(uint32 *buf, uint32 const *in);
      |                                        ~~~~~~~~~~~~~~^~
gcc -c  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -Icsrc csrc/zsockr.c
gcc -c  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -Icsrc csrc/misc_acnuc.c
gcc -c  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -Icsrc csrc/dnapars.c
csrc/dnapars.c: In function ‘dnapars’:
csrc/dnapars.c:1685:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 1685 |     fread(tree, L, 1, outtree);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
csrc/dnapars.c: At top level:
csrc/dnapars.c:112:17: warning: ‘names’ defined but not used [-Wunused-variable]
  112 | static boolean *names;
      |                 ^~~~~
csrc/dnapars.c:108:16: warning: ‘nothing’ defined but not used [-Wunused-variable]
  108 | static baseptr nothing;
      |                ^~~~~~~
csrc/dnapars.c:81:6: warning: ‘weightfilename’ defined but not used [-Wunused-variable]
   81 |      weightfilename[FNMLNGTH];
      |      ^~~~~~~~~~~~~~
csrc/dnapars.c:80:58: warning: ‘intreename’ defined but not used [-Wunused-variable]
   80 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename,
      |                                                          ^~~~~~~~~~
csrc/dnapars.c:80:35: warning: ‘outfilename’ defined but not used [-Wunused-variable]
   80 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename,
      |                                   ^~~~~~~~~~~
csrc/dnapars.c:80:13: warning: ‘infilename’ defined but not used [-Wunused-variable]
   80 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename,
      |             ^~~~~~~~~~
gcc -c  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -Icsrc csrc/protpars.c
csrc/protpars.c: In function ‘protpars’:
csrc/protpars.c:2097:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
 2097 |     fread(tree, L, 1, outtree);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~
csrc/protpars.c: At top level:
csrc/protpars.c:129:12: warning: ‘tmpa’ defined but not used [-Wunused-variable]
  129 | static aas tmpa;
      |            ^~~~
csrc/protpars.c:111:21: warning: ‘inseed0’ defined but not used [-Wunused-variable]
  111 | static long inseed, inseed0;
      |                     ^~~~~~~
csrc/protpars.c:111:13: warning: ‘inseed’ defined but not used [-Wunused-variable]
  111 | static long inseed, inseed0;
      |             ^~~~~~
csrc/protpars.c:107:94: warning: ‘weightfilename’ defined but not used [-Wunused-variable]
  107 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, weightfilename[FNMLNGTH];
      |                                                                                              ^~~~~~~~~~~~~~
csrc/protpars.c:107:58: warning: ‘intreename’ defined but not used [-Wunused-variable]
  107 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, weightfilename[FNMLNGTH];
      |                                                          ^~~~~~~~~~
csrc/protpars.c:107:35: warning: ‘outfilename’ defined but not used [-Wunused-variable]
  107 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, weightfilename[FNMLNGTH];
      |                                   ^~~~~~~~~~~
csrc/protpars.c:107:13: warning: ‘infilename’ defined but not used [-Wunused-variable]
  107 | static Char infilename[FNMLNGTH], outfilename[FNMLNGTH], intreename[FNMLNGTH], *outtreename, weightfilename[FNMLNGTH];
      |             ^~~~~~~~~~
gcc -c  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -Icsrc csrc/seq.c
gcc -c  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -Icsrc csrc/phylip.c
csrc/phylip.c: In function ‘scan_eoln’:
csrc/phylip.c:161:8: warning: variable ‘ch’ set but not used [-Wunused-but-set-variable]
  161 |   char ch;
      |        ^~
csrc/seq.c: In function ‘collapsetree’:
csrc/seq.c:4015:11: warning: variable ‘j’ set but not used [-Wunused-but-set-variable]
 4015 |   long i, j, index, index2, numd;
      |           ^
csrc/phylip.c: In function ‘stringnames_new’:
csrc/phylip.c:2980:8: warning: variable ‘len’ set but not used [-Wunused-but-set-variable]
 2980 |   long len, i;
      |        ^~~
gcc -c  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -Icsrc csrc/lwl.c
csrc/lwl.c: In function ‘prefastlwl’:
csrc/lwl.c:412:1: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  412 | else
      | ^~~~
csrc/lwl.c:414:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  414 |         aa[9] = 14;/* agc S */
      |         ^~
csrc/lwl.c:417:1: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  417 | else
      | ^~~~
csrc/lwl.c:419:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  419 |         aa[11] = 14;/* agt S */
      |         ^~
csrc/lwl.c:422:1: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  422 | else
      | ^~~~
csrc/lwl.c:424:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  424 |         aa[13] = 7;/* atc I */
      |         ^~
csrc/lwl.c:469:1: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  469 | else
      | ^~~~
csrc/lwl.c:471:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  471 |         aa[57] = 10;/* tgc */
      |         ^~
gcc -c  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -Icsrc csrc/bionj.c
gcc -c  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -Dunix -Icsrc csrc/phyml_util.c
csrc/phyml_util.c: In function ‘Warn_And_Exit’:
csrc/phyml_util.c:47:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   47 |         fscanf(stdin,"%c",&c);
      |         ^~~~~~~~~~~~~~~~~~~~~
g++ -o seaview  -Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  seaview.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o concatenate.o statistics.o trees.o treedraw.o addbootstrap.o least_squares_brl.o pseudoterminal.o unrooted.o pdf_or_ps.o svg.o threads.o tbe.o treerecs_draw.o Fl_SVG_Image.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o dnapars.o protpars.o seq.o phylip.o lwl.o bionj.o phyml_util.o  `fltk-config --use-images --ldflags` -ldl -lpthread -lz 
treedraw.cxx:42:16: warning: type ‘struct branche’ violates the C++ One Definition Rule [-Wodr]
   42 | typedef struct branche { /* une branche definie par ses deux extremites */
      |                ^
addbootstrap.cxx:17:16: note: a different type is defined in another translation unit
   17 | typedef struct branche { /* une branche definie par ses deux extremites */
      |                ^
addbootstrap.cxx:21:14: note: the first difference of corresponding definitions is field ‘bits’
   21 |         int *bits;
      |              ^
addbootstrap.cxx:17:16: note: a type with different number of fields is defined in another translation unit
   17 | typedef struct branche { /* une branche definie par ses deux extremites */
      |                ^
use_mase_files.cxx:115:12: warning: ‘isarg’ violates the C++ One Definition Rule [-Wodr]
  115 | extern int isarg(int argc, char *argv[], const char *arg);
      |            ^
treedraw.cxx:3368:6: note: return value type mismatch
 3368 | bool isarg(int argc, char *argv[], const char *arg)
      |      ^
treedraw.cxx:3368:6: note: type ‘bool’ should match type ‘int’
treedraw.cxx:3368:6: note: ‘isarg’ was previously declared here
treedraw.cxx:3368:6: note: code may be misoptimized unless ‘-fno-strict-aliasing’ is used
In function ‘show_dot_plot’,
    inlined from ‘edit_menu_callback’ at seaview.cxx:2557:15:
xfmatpt.cxx:124:21: warning: ‘free’ called on pointer ‘_736->seq1’ with nonzero offset 1 [-Wfree-nonheap-object]
  124 |                 free(matpt->seq1+1);
      |                     ^
xfmatpt.cxx:125:21: warning: ‘free’ called on pointer ‘_736->seq2’ with nonzero offset 1 [-Wfree-nonheap-object]
  125 |                 free(matpt->seq2+1);
      |                     ^
In function ‘really_close’,
    inlined from ‘exit_button_proc’ at xfmatpt.cxx:898:18:
xfmatpt.cxx:889:5: warning: ‘free’ called on pointer ‘matpt_4(D)->seq1’ with nonzero offset 1 [-Wfree-nonheap-object]
  889 | free(matpt->seq1 + 1);
      |     ^
xfmatpt.cxx:890:5: warning: ‘free’ called on pointer ‘matpt_4(D)->seq2’ with nonzero offset 1 [-Wfree-nonheap-object]
  890 | free(matpt->seq2 + 1);
      |     ^
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.PD2KTd
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/seaview-5.0-9.fc41.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/seaview-5.0-9.fc41.x86_64
++ dirname /builddir/build/BUILDROOT/seaview-5.0-9.fc41.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/seaview-5.0-9.fc41.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd seaview
+ rm -rf /builddir/build/BUILDROOT/seaview-5.0-9.fc41.x86_64
+ mkdir -p /builddir/build/BUILDROOT/seaview-5.0-9.fc41.x86_64/usr/share/seaview
+ mkdir -p /builddir/build/BUILDROOT/seaview-5.0-9.fc41.x86_64/usr/bin
+ mkdir -p /builddir/build/BUILDROOT/seaview-5.0-9.fc41.x86_64//usr/share/man/man1
+ install -m 755 seaview /builddir/build/BUILDROOT/seaview-5.0-9.fc41.x86_64//usr/bin
+ desktop-file-install --dir /builddir/build/BUILDROOT/seaview-5.0-9.fc41.x86_64/usr/share/applications /builddir/build/SOURCES/seaview.desktop
+ mkdir -p /builddir/build/BUILDROOT/seaview-5.0-9.fc41.x86_64/usr/share/pixmaps/
+ install -m 0644 -p seaview.xpm /builddir/build/BUILDROOT/seaview-5.0-9.fc41.x86_64/usr/share/pixmaps/seaview.xpm
+ install -m 0644 -p seaview.svg /builddir/build/BUILDROOT/seaview-5.0-9.fc41.x86_64/usr/share/pixmaps/seaview.svg
+ mkdir -p /builddir/build/BUILDROOT/seaview-5.0-9.fc41.x86_64/usr/share/appdata/
+ install -m 0644 -p seaview.appdata.xml /builddir/build/BUILDROOT/seaview-5.0-9.fc41.x86_64/usr/share/appdata/seaview.appdata.xml
+ install -m 644 seaview.1 /builddir/build/BUILDROOT/seaview-5.0-9.fc41.x86_64//usr/share/man/man1
+ /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 5.0-9.fc41 --unique-debug-suffix -5.0-9.fc41.x86_64 --unique-debug-src-base seaview-5.0-9.fc41.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/seaview
find-debuginfo: starting
Extracting debug info from 1 files
DWARF-compressing 1 files
sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/seaview-5.0-9.fc41.x86_64
3338 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.IXI1HI
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd seaview
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: seaview-5.0-9.fc41.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.imGqWU
+ umask 022
+ cd /builddir/build/BUILD
+ cd seaview
+ DOCDIR=/builddir/build/BUILDROOT/seaview-5.0-9.fc41.x86_64/usr/share/doc/seaview
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/seaview-5.0-9.fc41.x86_64/usr/share/doc/seaview
+ cp -pr /builddir/build/BUILD/seaview/seaview.1.xml /builddir/build/BUILDROOT/seaview-5.0-9.fc41.x86_64/usr/share/doc/seaview
+ cp -pr /builddir/build/BUILD/seaview/seaview.html /builddir/build/BUILDROOT/seaview-5.0-9.fc41.x86_64/usr/share/doc/seaview
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: application() application(seaview.desktop) metainfo() metainfo(seaview.appdata.xml) seaview = 5.0-9.fc41 seaview(x86-64) = 5.0-9.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.11)(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libfltk.so.1.3()(64bit) libfltk_images.so.1.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libz.so.1()(64bit) rtld(GNU_HASH)
Processing files: seaview-debugsource-5.0-9.fc41.x86_64
Provides: seaview-debugsource = 5.0-9.fc41 seaview-debugsource(x86-64) = 5.0-9.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: seaview-debuginfo-5.0-9.fc41.x86_64
Provides: debuginfo(build-id) = ed20fe8b95138bc91e40b160f7722effb627d1d4 seaview-debuginfo = 5.0-9.fc41 seaview-debuginfo(x86-64) = 5.0-9.fc41
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: seaview-debugsource(x86-64) = 5.0-9.fc41
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/seaview-5.0-9.fc41.x86_64
Wrote: /builddir/build/RPMS/seaview-5.0-9.fc41.x86_64.rpm
Wrote: /builddir/build/RPMS/seaview-debugsource-5.0-9.fc41.x86_64.rpm
Wrote: /builddir/build/RPMS/seaview-debuginfo-5.0-9.fc41.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.euE1B6
+ umask 022
+ cd /builddir/build/BUILD
+ cd seaview
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/seaview-5.0-9.fc41.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.OYTZQ2
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf /builddir/build/BUILD/seaview-SPECPARTS
+ rm -rf seaview seaview.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0

RPM build warnings:
    %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Finish: rpmbuild seaview-5.0-9.fc41.src.rpm
Finish: build phase for seaview-5.0-9.fc41.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1709292777.396084/root/var/log/dnf5.log
INFO: Done(/var/lib/copr-rpmbuild/results/seaview-5.0-9.fc41.src.rpm) Config(child) 0 minutes 21 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "seaview-debugsource",
            "epoch": null,
            "version": "5.0",
            "release": "9.fc41",
            "arch": "x86_64"
        },
        {
            "name": "seaview",
            "epoch": null,
            "version": "5.0",
            "release": "9.fc41",
            "arch": "src"
        },
        {
            "name": "seaview-debuginfo",
            "epoch": null,
            "version": "5.0",
            "release": "9.fc41",
            "arch": "x86_64"
        },
        {
            "name": "seaview",
            "epoch": null,
            "version": "5.0",
            "release": "9.fc41",
            "arch": "x86_64"
        }
    ]
}
RPMResults finished