Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c18e' (ED25519) to the list of known hosts.
You can reproduce this build on your computer by running:
sudo dnf install copr-rpmbuild
/usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6279233-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64
Version: 0.68
PID: 12278
Logging PID: 12279
Task:
{'appstream': False,
'background': False,
'build_id': 6279233,
'buildroot_pkgs': [],
'chroot': 'fedora-rawhide-x86_64',
'enable_net': False,
'fedora_review': False,
'git_hash': 'f99dec7320ed7e57c3f5ac3ac2e88d72d5dc4ac4',
'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-wheel-92af55f9/smoldyn',
'isolation': 'default',
'memory_reqs': 2048,
'package_name': 'smoldyn',
'package_version': '2.67.3-6',
'project_dirname': 'python-wheel-92af55f9',
'project_name': 'python-wheel-92af55f9',
'project_owner': 'thrnciar',
'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/thrnciar/python-wheel-92af55f9/fedora-rawhide-x86_64/',
'id': 'copr_base',
'name': 'Copr repository'}],
'sandbox': 'thrnciar/python-wheel-92af55f9--thrnciar',
'source_json': {},
'source_type': None,
'submitter': 'thrnciar',
'tags': [],
'task_id': '6279233-fedora-rawhide-x86_64',
'timeout': 18000,
'uses_devel_repo': False,
'with_opts': [],
'without_opts': []}
Running: git clone https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-wheel-92af55f9/smoldyn /var/lib/copr-rpmbuild/workspace/workdir-39nsww19/smoldyn --depth 500 --no-single-branch --recursive
cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-wheel-92af55f9/smoldyn', '/var/lib/copr-rpmbuild/workspace/workdir-39nsww19/smoldyn', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout:
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-39nsww19/smoldyn'...
Running: git checkout f99dec7320ed7e57c3f5ac3ac2e88d72d5dc4ac4 --
cmd: ['git', 'checkout', 'f99dec7320ed7e57c3f5ac3ac2e88d72d5dc4ac4', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-39nsww19/smoldyn
rc: 0
stdout:
stderr: Note: switching to 'f99dec7320ed7e57c3f5ac3ac2e88d72d5dc4ac4'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:
git switch -c <new-branch-name>
Or undo this operation with:
git switch -
Turn off this advice by setting config variable advice.detachedHead to false
HEAD is now at f99dec7 automatic import of smoldyn
Running: copr-distgit-client sources
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-39nsww19/smoldyn
rc: 0
stdout:
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading Smoldyn-2.67.3.tar.gz
INFO: Calling: curl -H Pragma: -o Smoldyn-2.67.3.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/thrnciar/python-wheel-92af55f9/smoldyn/Smoldyn-2.67.3.tar.gz/md5/061227e5683e484b0dd465d378e5390b/Smoldyn-2.67.3.tar.gz
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 92.0M 100 92.0M 0 0 26.5M 0 0:00:03 0:00:03 --:--:-- 26.5M
INFO: Reading stdout from command: md5sum Smoldyn-2.67.3.tar.gz
Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-39nsww19/smoldyn/smoldyn.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-39nsww19/smoldyn --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1692102126.587961 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.0 starting (python version = 3.11.3, NVR = mock-5.0-1.fc38)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-39nsww19/smoldyn/smoldyn.spec) Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.0
INFO: Mock Version: 5.0
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1692102126.587961/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1692102126.587961/root
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/a2c9f22408b74714d9cd5219089c17bd0236fe70d5fd6c04f5a7037cac14cbf1/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/a2c9f22408b74714d9cd5219089c17bd0236fe70d5fd6c04f5a7037cac14cbf1/merged) with podman image umount
INFO: Package manager dnf detected and used (fallback)
INFO: Bootstrap image not marked ready
Start(bootstrap): installing dnf tooling
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 22 MB/s | 3.8 MB 00:00
fedora 26 MB/s | 73 MB 00:02
Package python3-dnf-4.16.2-2.fc39.noarch is already installed.
Dependencies resolved.
================================================================================
Package Arch Version Repository Size
================================================================================
Installing:
python3-dnf-plugins-core noarch 4.4.2-1.fc39 fedora 293 k
Installing dependencies:
dbus-libs x86_64 1:1.14.8-2.fc39 fedora 156 k
python3-dateutil noarch 1:2.8.2-10.fc39 fedora 355 k
python3-dbus x86_64 1.3.2-4.fc40 copr_base 147 k
python3-distro noarch 1.8.0-6.fc40 copr_base 45 k
python3-six noarch 1.16.0-12.fc40 copr_base 41 k
python3-systemd x86_64 235-5.fc39 fedora 107 k
Transaction Summary
================================================================================
Install 7 Packages
Total download size: 1.1 M
Installed size: 3.5 M
Downloading Packages:
(1/7): python3-distro-1.8.0-6.fc40.noarch.rpm 612 kB/s | 45 kB 00:00
(2/7): python3-six-1.16.0-12.fc40.noarch.rpm 556 kB/s | 41 kB 00:00
(3/7): python3-dbus-1.3.2-4.fc40.x86_64.rpm 1.9 MB/s | 147 kB 00:00
(4/7): dbus-libs-1.14.8-2.fc39.x86_64.rpm 380 kB/s | 156 kB 00:00
(5/7): python3-dnf-plugins-core-4.4.2-1.fc39.no 659 kB/s | 293 kB 00:00
(6/7): python3-dateutil-2.8.2-10.fc39.noarch.rp 718 kB/s | 355 kB 00:00
(7/7): python3-systemd-235-5.fc39.x86_64.rpm 1.1 MB/s | 107 kB 00:00
--------------------------------------------------------------------------------
Total 1.8 MB/s | 1.1 MB 00:00
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Preparing : 1/1
Installing : python3-systemd-235-5.fc39.x86_64 1/7
Installing : dbus-libs-1:1.14.8-2.fc39.x86_64 2/7
Installing : python3-dbus-1.3.2-4.fc40.x86_64 3/7
Installing : python3-six-1.16.0-12.fc40.noarch 4/7
Installing : python3-dateutil-1:2.8.2-10.fc39.noarch 5/7
Installing : python3-distro-1.8.0-6.fc40.noarch 6/7
Installing : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 7/7
Running scriptlet: python3-dnf-plugins-core-4.4.2-1.fc39.noarch 7/7
Verifying : python3-dbus-1.3.2-4.fc40.x86_64 1/7
Verifying : python3-distro-1.8.0-6.fc40.noarch 2/7
Verifying : python3-six-1.16.0-12.fc40.noarch 3/7
Verifying : dbus-libs-1:1.14.8-2.fc39.x86_64 4/7
Verifying : python3-dateutil-1:2.8.2-10.fc39.noarch 5/7
Verifying : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 6/7
Verifying : python3-systemd-235-5.fc39.x86_64 7/7
Installed:
dbus-libs-1:1.14.8-2.fc39.x86_64
python3-dateutil-1:2.8.2-10.fc39.noarch
python3-dbus-1.3.2-4.fc40.x86_64
python3-distro-1.8.0-6.fc40.noarch
python3-dnf-plugins-core-4.4.2-1.fc39.noarch
python3-six-1.16.0-12.fc40.noarch
python3-systemd-235-5.fc39.x86_64
Complete!
Finish(bootstrap): installing dnf tooling
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1692102126.587961/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf detected and used (direct choice)
Start: installing minimal buildroot with dnf
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 37 kB/s | 1.5 kB 00:00
Copr repository 24 MB/s | 3.8 MB 00:00
fedora 624 kB/s | 22 kB 00:00
fedora 2.8 MB/s | 1.7 MB 00:00
Last metadata expiration check: 0:00:01 ago on Tue Aug 15 12:22:38 2023.
Dependencies resolved.
================================================================================
Package Arch Version Repo Size
================================================================================
Installing group/module packages:
bash x86_64 5.2.15-5.fc39 fedora 1.8 M
bzip2 x86_64 1.0.8-16.fc39 fedora 52 k
coreutils x86_64 9.3-2.fc39 fedora 1.1 M
cpio x86_64 2.14-4.fc39 fedora 279 k
diffutils x86_64 3.10-3.fc39 fedora 398 k
fedora-release-common noarch 40-0.2 fedora 17 k
findutils x86_64 1:4.9.0-5.fc39 fedora 492 k
gawk x86_64 5.2.2-2.fc39 fedora 1.1 M
glibc-minimal-langpack x86_64 2.38-1.fc39 fedora 67 k
grep x86_64 3.11-5.fc40 fedora 298 k
gzip x86_64 1.12-6.fc39 fedora 166 k
info x86_64 7.0.3-3.fc39 fedora 182 k
patch x86_64 2.7.6-22.fc39 fedora 125 k
redhat-rpm-config noarch 262-1.fc39 fedora 84 k
rpm-build x86_64 4.18.92-1.fc39 fedora 78 k
sed x86_64 4.8-14.fc39 fedora 306 k
shadow-utils x86_64 2:4.13-8.fc39 fedora 1.3 M
tar x86_64 2:1.35-1.fc39 fedora 862 k
unzip x86_64 6.0-62.fc39 fedora 184 k
util-linux x86_64 2.39.1-3.fc39 fedora 1.2 M
which x86_64 2.21-40.fc39 fedora 42 k
xz x86_64 5.4.4-1.fc39 fedora 556 k
Installing dependencies:
alternatives x86_64 1.25-1.fc39 fedora 39 k
ansible-srpm-macros noarch 1-11.fc39 fedora 21 k
audit-libs x86_64 3.1.2-1.fc39 fedora 117 k
authselect x86_64 1.4.2-3.fc39 fedora 144 k
authselect-libs x86_64 1.4.2-3.fc39 fedora 249 k
basesystem noarch 11-18.fc39 fedora 7.2 k
binutils x86_64 2.40-13.fc39 fedora 5.6 M
binutils-gold x86_64 2.40-13.fc39 fedora 797 k
bzip2-libs x86_64 1.0.8-16.fc39 fedora 41 k
ca-certificates noarch 2023.2.60_v7.0.306-2.fc39 fedora 837 k
coreutils-common x86_64 9.3-2.fc39 fedora 2.1 M
cracklib x86_64 2.9.11-2.fc39 fedora 94 k
crypto-policies noarch 20230731-1.git5ed06e0.fc39 fedora 99 k
curl x86_64 8.2.1-2.fc40 fedora 346 k
cyrus-sasl-lib x86_64 2.1.28-11.fc39 fedora 793 k
debugedit x86_64 5.0-10.fc39 fedora 77 k
dwz x86_64 0.15-3.fc39 fedora 134 k
ed x86_64 1.19-4.fc39 fedora 79 k
efi-srpm-macros noarch 5-9.fc39 fedora 22 k
elfutils x86_64 0.189-4.fc39 fedora 537 k
elfutils-debuginfod-client x86_64 0.189-4.fc39 fedora 38 k
elfutils-default-yama-scope noarch 0.189-4.fc39 fedora 13 k
elfutils-libelf x86_64 0.189-4.fc39 fedora 194 k
elfutils-libs x86_64 0.189-4.fc39 fedora 258 k
fedora-gpg-keys noarch 40-0.1 fedora 130 k
fedora-release noarch 40-0.2 fedora 7.2 k
fedora-release-identity-basic
noarch 40-0.2 fedora 8.0 k
fedora-repos noarch 40-0.1 fedora 9.4 k
fedora-repos-rawhide noarch 40-0.1 fedora 9.0 k
file x86_64 5.44-5.fc39 fedora 49 k
file-libs x86_64 5.44-5.fc39 fedora 729 k
filesystem x86_64 3.18-6.fc39 fedora 1.1 M
fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k
fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k
gdb-minimal x86_64 13.2-7.fc39 fedora 4.2 M
gdbm-libs x86_64 1:1.23-4.fc39 fedora 56 k
ghc-srpm-macros noarch 1.6.1-2.fc39 fedora 7.8 k
glibc x86_64 2.38-1.fc39 fedora 2.2 M
glibc-common x86_64 2.38-1.fc39 fedora 348 k
glibc-gconv-extra x86_64 2.38-1.fc39 fedora 1.6 M
gmp x86_64 1:6.2.1-5.fc39 fedora 313 k
gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k
go-srpm-macros noarch 3.2.0-6.fc39 fedora 27 k
jansson x86_64 2.13.1-7.fc39 fedora 44 k
kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k
keyutils-libs x86_64 1.6.1-7.fc39 fedora 31 k
krb5-libs x86_64 1.21-3.fc39 fedora 765 k
libacl x86_64 2.3.1-8.fc39 fedora 23 k
libarchive x86_64 3.7.1-1.fc39 fedora 408 k
libattr x86_64 2.5.1-8.fc39 fedora 18 k
libblkid x86_64 2.39.1-3.fc39 fedora 116 k
libbrotli x86_64 1.0.9-13.fc39 fedora 317 k
libcap x86_64 2.48-7.fc39 fedora 68 k
libcap-ng x86_64 0.8.3-7.fc39 fedora 32 k
libcom_err x86_64 1.47.0-2.fc39 fedora 26 k
libcurl x86_64 8.2.1-2.fc40 fedora 328 k
libdb x86_64 5.3.28-56.fc39 fedora 760 k
libeconf x86_64 0.4.0-6.fc39 fedora 27 k
libevent x86_64 2.1.12-9.fc39 fedora 258 k
libfdisk x86_64 2.39.1-3.fc39 fedora 162 k
libffi x86_64 3.4.4-4.fc39 fedora 40 k
libgcc x86_64 13.2.1-1.fc39 fedora 109 k
libgomp x86_64 13.2.1-1.fc39 fedora 319 k
libidn2 x86_64 2.3.4-3.fc39 fedora 117 k
libmount x86_64 2.39.1-3.fc39 fedora 154 k
libnghttp2 x86_64 1.55.1-2.fc39 fedora 75 k
libnsl2 x86_64 2.0.0-6.fc39 fedora 30 k
libpkgconf x86_64 1.9.5-2.fc39 fedora 38 k
libpsl x86_64 0.21.2-4.fc39 fedora 63 k
libpwquality x86_64 1.4.5-6.fc39 fedora 120 k
libselinux x86_64 3.5-5.fc40 copr_base 87 k
libsemanage x86_64 3.5-4.fc39 fedora 120 k
libsepol x86_64 3.5-2.fc39 fedora 324 k
libsigsegv x86_64 2.14-5.fc39 fedora 27 k
libsmartcols x86_64 2.39.1-3.fc39 fedora 67 k
libssh x86_64 0.10.5-2.fc39 fedora 211 k
libssh-config noarch 0.10.5-2.fc39 fedora 9.2 k
libstdc++ x86_64 13.2.1-1.fc39 fedora 860 k
libtasn1 x86_64 4.19.0-3.fc39 fedora 74 k
libtirpc x86_64 1.3.3-1.rc2.fc39 fedora 94 k
libunistring x86_64 1.1-4.fc39 fedora 543 k
libutempter x86_64 1.2.1-10.fc39 fedora 26 k
libuuid x86_64 2.39.1-3.fc39 fedora 28 k
libverto x86_64 0.3.2-6.fc39 fedora 20 k
libxcrypt x86_64 4.4.36-2.fc39 fedora 119 k
libxml2 x86_64 2.10.4-3.fc39 fedora 701 k
libzstd x86_64 1.5.5-4.fc39 fedora 309 k
lua-libs x86_64 5.4.6-3.fc39 fedora 133 k
lua-srpm-macros noarch 1-9.fc39 fedora 8.6 k
lz4-libs x86_64 1.9.4-4.fc39 fedora 67 k
mpfr x86_64 4.2.0-3.fc39 fedora 344 k
ncurses-base noarch 6.4-6.20230520.fc39 fedora 88 k
ncurses-libs x86_64 6.4-6.20230520.fc39 fedora 336 k
ocaml-srpm-macros noarch 8-2.fc39 fedora 14 k
openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k
openldap x86_64 2.6.6-1.fc39 fedora 255 k
openssl-libs x86_64 1:3.1.1-1.fc39 fedora 2.2 M
p11-kit x86_64 0.25.0-2.fc39 fedora 486 k
p11-kit-trust x86_64 0.25.0-2.fc39 fedora 142 k
package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k
pam x86_64 1.5.3-2.fc39 fedora 548 k
pam-libs x86_64 1.5.3-2.fc39 fedora 58 k
pcre2 x86_64 10.42-1.fc39.2 fedora 233 k
pcre2-syntax noarch 10.42-1.fc39.2 fedora 143 k
perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k
pkgconf x86_64 1.9.5-2.fc39 fedora 42 k
pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k
pkgconf-pkg-config x86_64 1.9.5-2.fc39 fedora 9.6 k
popt x86_64 1.19-3.fc39 fedora 66 k
publicsuffix-list-dafsa noarch 20230614-2.fc39 fedora 57 k
pyproject-srpm-macros noarch 1.9.0-2.fc40 copr_base 15 k
python-srpm-macros noarch 3.12-2.fc39 fedora 25 k
qt5-srpm-macros noarch 5.15.10-2.fc39 fedora 8.3 k
qt6-srpm-macros noarch 6.5.2-2.fc39 fedora 9.2 k
readline x86_64 8.2-4.fc39 fedora 213 k
rpm x86_64 4.18.92-1.fc39 fedora 533 k
rpm-build-libs x86_64 4.18.92-1.fc39 fedora 96 k
rpm-libs x86_64 4.18.92-1.fc39 fedora 312 k
rpm-sequoia x86_64 1.4.1-2.fc39 fedora 869 k
rpmautospec-rpm-macros noarch 0.3.5-4.fc39 fedora 8.8 k
rust-srpm-macros noarch 24-3.fc39 fedora 12 k
setup noarch 2.14.4-1.fc39 fedora 154 k
sqlite-libs x86_64 3.42.0-7.fc39 fedora 678 k
systemd-libs x86_64 254.1-2.fc40 fedora 688 k
tzdata noarch 2023c-2.fc39 fedora 718 k
util-linux-core x86_64 2.39.1-3.fc39 fedora 494 k
xxhash-libs x86_64 0.8.2-1.fc39 fedora 37 k
xz-libs x86_64 5.4.4-1.fc39 fedora 108 k
zip x86_64 3.0-38.fc39 fedora 266 k
zlib x86_64 1.2.13-4.fc39 fedora 94 k
zstd x86_64 1.5.5-4.fc39 fedora 482 k
Installing Groups:
Buildsystem building group
Transaction Summary
================================================================================
Install 153 Packages
Total size: 53 M
Installed size: 180 M
Downloading Packages:
[SKIPPED] libselinux-3.5-5.fc40.x86_64.rpm: Already downloaded
[SKIPPED] pyproject-srpm-macros-1.9.0-2.fc40.noarch.rpm: Already downloaded
[SKIPPED] alternatives-1.25-1.fc39.x86_64.rpm: Already downloaded
[SKIPPED] ansible-srpm-macros-1-11.fc39.noarch.rpm: Already downloaded
[SKIPPED] audit-libs-3.1.2-1.fc39.x86_64.rpm: Already downloaded
[SKIPPED] authselect-1.4.2-3.fc39.x86_64.rpm: Already downloaded
[SKIPPED] authselect-libs-1.4.2-3.fc39.x86_64.rpm: Already downloaded
[SKIPPED] basesystem-11-18.fc39.noarch.rpm: Already downloaded
[SKIPPED] bash-5.2.15-5.fc39.x86_64.rpm: Already downloaded
[SKIPPED] binutils-2.40-13.fc39.x86_64.rpm: Already downloaded
[SKIPPED] binutils-gold-2.40-13.fc39.x86_64.rpm: Already downloaded
[SKIPPED] bzip2-1.0.8-16.fc39.x86_64.rpm: Already downloaded
[SKIPPED] bzip2-libs-1.0.8-16.fc39.x86_64.rpm: Already downloaded
[SKIPPED] ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch.rpm: Already downloaded
[SKIPPED] coreutils-9.3-2.fc39.x86_64.rpm: Already downloaded
[SKIPPED] coreutils-common-9.3-2.fc39.x86_64.rpm: Already downloaded
[SKIPPED] cpio-2.14-4.fc39.x86_64.rpm: Already downloaded
[SKIPPED] cracklib-2.9.11-2.fc39.x86_64.rpm: Already downloaded
[SKIPPED] crypto-policies-20230731-1.git5ed06e0.fc39.noarch.rpm: Already downloaded
[SKIPPED] curl-8.2.1-2.fc40.x86_64.rpm: Already downloaded
[SKIPPED] cyrus-sasl-lib-2.1.28-11.fc39.x86_64.rpm: Already downloaded
[SKIPPED] debugedit-5.0-10.fc39.x86_64.rpm: Already downloaded
[SKIPPED] diffutils-3.10-3.fc39.x86_64.rpm: Already downloaded
[SKIPPED] dwz-0.15-3.fc39.x86_64.rpm: Already downloaded
[SKIPPED] ed-1.19-4.fc39.x86_64.rpm: Already downloaded
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fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0xA15B79CC:
Userid : "Fedora (40) <fedora-40-primary@fedoraproject.org>"
Fingerprint: 115D F9AE F857 853E E844 5D0A 0727 707E A15B 79CC
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary
Key imported successfully
fedora 1.6 MB/s | 1.6 kB 00:00
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary (0xA15B79CC) is already installed
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0x18B8E74C:
Userid : "Fedora (39) <fedora-39-primary@fedoraproject.org>"
Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
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Installing : libcurl-8.2.1-2.fc40.x86_64 128/153
Installing : elfutils-libs-0.189-4.fc39.x86_64 129/153
Installing : elfutils-debuginfod-client-0.189-4.fc39.x86_64 130/153
Installing : binutils-gold-2.40-13.fc39.x86_64 131/153
Running scriptlet: binutils-gold-2.40-13.fc39.x86_64 131/153
Installing : binutils-2.40-13.fc39.x86_64 132/153
Running scriptlet: binutils-2.40-13.fc39.x86_64 132/153
Installing : elfutils-0.189-4.fc39.x86_64 133/153
Installing : gdb-minimal-13.2-7.fc39.x86_64 134/153
Installing : debugedit-5.0-10.fc39.x86_64 135/153
Installing : curl-8.2.1-2.fc40.x86_64 136/153
Installing : rpm-sequoia-1.4.1-2.fc39.x86_64 137/153
Installing : rpm-libs-4.18.92-1.fc39.x86_64 138/153
Running scriptlet: rpm-4.18.92-1.fc39.x86_64 139/153
Installing : rpm-4.18.92-1.fc39.x86_64 139/153
Installing : efi-srpm-macros-5-9.fc39.noarch 140/153
Installing : lua-srpm-macros-1-9.fc39.noarch 141/153
Installing : rpmautospec-rpm-macros-0.3.5-4.fc39.noarch 142/153
Installing : rpm-build-libs-4.18.92-1.fc39.x86_64 143/153
Installing : ansible-srpm-macros-1-11.fc39.noarch 144/153
Installing : pyproject-srpm-macros-1.9.0-2.fc40.noarch 145/153
Installing : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 146/153
Installing : go-srpm-macros-3.2.0-6.fc39.noarch 147/153
Installing : python-srpm-macros-3.12-2.fc39.noarch 148/153
Installing : redhat-rpm-config-262-1.fc39.noarch 149/153
Installing : rpm-build-4.18.92-1.fc39.x86_64 150/153
Installing : util-linux-2.39.1-3.fc39.x86_64 151/153
Installing : which-2.21-40.fc39.x86_64 152/153
Installing : info-7.0.3-3.fc39.x86_64 153/153
Running scriptlet: filesystem-3.18-6.fc39.x86_64 153/153
Running scriptlet: ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch 153/153
Running scriptlet: authselect-libs-1.4.2-3.fc39.x86_64 153/153
Running scriptlet: rpm-4.18.92-1.fc39.x86_64 153/153
Running scriptlet: info-7.0.3-3.fc39.x86_64 153/153
Verifying : libselinux-3.5-5.fc40.x86_64 1/153
Verifying : pyproject-srpm-macros-1.9.0-2.fc40.noarch 2/153
Verifying : alternatives-1.25-1.fc39.x86_64 3/153
Verifying : ansible-srpm-macros-1-11.fc39.noarch 4/153
Verifying : audit-libs-3.1.2-1.fc39.x86_64 5/153
Verifying : authselect-1.4.2-3.fc39.x86_64 6/153
Verifying : authselect-libs-1.4.2-3.fc39.x86_64 7/153
Verifying : basesystem-11-18.fc39.noarch 8/153
Verifying : bash-5.2.15-5.fc39.x86_64 9/153
Verifying : binutils-2.40-13.fc39.x86_64 10/153
Verifying : binutils-gold-2.40-13.fc39.x86_64 11/153
Verifying : bzip2-1.0.8-16.fc39.x86_64 12/153
Verifying : bzip2-libs-1.0.8-16.fc39.x86_64 13/153
Verifying : ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch 14/153
Verifying : coreutils-9.3-2.fc39.x86_64 15/153
Verifying : coreutils-common-9.3-2.fc39.x86_64 16/153
Verifying : cpio-2.14-4.fc39.x86_64 17/153
Verifying : cracklib-2.9.11-2.fc39.x86_64 18/153
Verifying : crypto-policies-20230731-1.git5ed06e0.fc39.noarc 19/153
Verifying : curl-8.2.1-2.fc40.x86_64 20/153
Verifying : cyrus-sasl-lib-2.1.28-11.fc39.x86_64 21/153
Verifying : debugedit-5.0-10.fc39.x86_64 22/153
Verifying : diffutils-3.10-3.fc39.x86_64 23/153
Verifying : dwz-0.15-3.fc39.x86_64 24/153
Verifying : ed-1.19-4.fc39.x86_64 25/153
Verifying : efi-srpm-macros-5-9.fc39.noarch 26/153
Verifying : elfutils-0.189-4.fc39.x86_64 27/153
Verifying : elfutils-debuginfod-client-0.189-4.fc39.x86_64 28/153
Verifying : elfutils-default-yama-scope-0.189-4.fc39.noarch 29/153
Verifying : elfutils-libelf-0.189-4.fc39.x86_64 30/153
Verifying : elfutils-libs-0.189-4.fc39.x86_64 31/153
Verifying : fedora-gpg-keys-40-0.1.noarch 32/153
Verifying : fedora-release-40-0.2.noarch 33/153
Verifying : fedora-release-common-40-0.2.noarch 34/153
Verifying : fedora-release-identity-basic-40-0.2.noarch 35/153
Verifying : fedora-repos-40-0.1.noarch 36/153
Verifying : fedora-repos-rawhide-40-0.1.noarch 37/153
Verifying : file-5.44-5.fc39.x86_64 38/153
Verifying : file-libs-5.44-5.fc39.x86_64 39/153
Verifying : filesystem-3.18-6.fc39.x86_64 40/153
Verifying : findutils-1:4.9.0-5.fc39.x86_64 41/153
Verifying : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 42/153
Verifying : fpc-srpm-macros-1.3-8.fc39.noarch 43/153
Verifying : gawk-5.2.2-2.fc39.x86_64 44/153
Verifying : gdb-minimal-13.2-7.fc39.x86_64 45/153
Verifying : gdbm-libs-1:1.23-4.fc39.x86_64 46/153
Verifying : ghc-srpm-macros-1.6.1-2.fc39.noarch 47/153
Verifying : glibc-2.38-1.fc39.x86_64 48/153
Verifying : glibc-common-2.38-1.fc39.x86_64 49/153
Verifying : glibc-gconv-extra-2.38-1.fc39.x86_64 50/153
Verifying : glibc-minimal-langpack-2.38-1.fc39.x86_64 51/153
Verifying : gmp-1:6.2.1-5.fc39.x86_64 52/153
Verifying : gnat-srpm-macros-6-3.fc39.noarch 53/153
Verifying : go-srpm-macros-3.2.0-6.fc39.noarch 54/153
Verifying : grep-3.11-5.fc40.x86_64 55/153
Verifying : gzip-1.12-6.fc39.x86_64 56/153
Verifying : info-7.0.3-3.fc39.x86_64 57/153
Verifying : jansson-2.13.1-7.fc39.x86_64 58/153
Verifying : kernel-srpm-macros-1.0-20.fc39.noarch 59/153
Verifying : keyutils-libs-1.6.1-7.fc39.x86_64 60/153
Verifying : krb5-libs-1.21-3.fc39.x86_64 61/153
Verifying : libacl-2.3.1-8.fc39.x86_64 62/153
Verifying : libarchive-3.7.1-1.fc39.x86_64 63/153
Verifying : libattr-2.5.1-8.fc39.x86_64 64/153
Verifying : libblkid-2.39.1-3.fc39.x86_64 65/153
Verifying : libbrotli-1.0.9-13.fc39.x86_64 66/153
Verifying : libcap-2.48-7.fc39.x86_64 67/153
Verifying : libcap-ng-0.8.3-7.fc39.x86_64 68/153
Verifying : libcom_err-1.47.0-2.fc39.x86_64 69/153
Verifying : libcurl-8.2.1-2.fc40.x86_64 70/153
Verifying : libdb-5.3.28-56.fc39.x86_64 71/153
Verifying : libeconf-0.4.0-6.fc39.x86_64 72/153
Verifying : libevent-2.1.12-9.fc39.x86_64 73/153
Verifying : libfdisk-2.39.1-3.fc39.x86_64 74/153
Verifying : libffi-3.4.4-4.fc39.x86_64 75/153
Verifying : libgcc-13.2.1-1.fc39.x86_64 76/153
Verifying : libgomp-13.2.1-1.fc39.x86_64 77/153
Verifying : libidn2-2.3.4-3.fc39.x86_64 78/153
Verifying : libmount-2.39.1-3.fc39.x86_64 79/153
Verifying : libnghttp2-1.55.1-2.fc39.x86_64 80/153
Verifying : libnsl2-2.0.0-6.fc39.x86_64 81/153
Verifying : libpkgconf-1.9.5-2.fc39.x86_64 82/153
Verifying : libpsl-0.21.2-4.fc39.x86_64 83/153
Verifying : libpwquality-1.4.5-6.fc39.x86_64 84/153
Verifying : libsemanage-3.5-4.fc39.x86_64 85/153
Verifying : libsepol-3.5-2.fc39.x86_64 86/153
Verifying : libsigsegv-2.14-5.fc39.x86_64 87/153
Verifying : libsmartcols-2.39.1-3.fc39.x86_64 88/153
Verifying : libssh-0.10.5-2.fc39.x86_64 89/153
Verifying : libssh-config-0.10.5-2.fc39.noarch 90/153
Verifying : libstdc++-13.2.1-1.fc39.x86_64 91/153
Verifying : libtasn1-4.19.0-3.fc39.x86_64 92/153
Verifying : libtirpc-1.3.3-1.rc2.fc39.x86_64 93/153
Verifying : libunistring-1.1-4.fc39.x86_64 94/153
Verifying : libutempter-1.2.1-10.fc39.x86_64 95/153
Verifying : libuuid-2.39.1-3.fc39.x86_64 96/153
Verifying : libverto-0.3.2-6.fc39.x86_64 97/153
Verifying : libxcrypt-4.4.36-2.fc39.x86_64 98/153
Verifying : libxml2-2.10.4-3.fc39.x86_64 99/153
Verifying : libzstd-1.5.5-4.fc39.x86_64 100/153
Verifying : lua-libs-5.4.6-3.fc39.x86_64 101/153
Verifying : lua-srpm-macros-1-9.fc39.noarch 102/153
Verifying : lz4-libs-1.9.4-4.fc39.x86_64 103/153
Verifying : mpfr-4.2.0-3.fc39.x86_64 104/153
Verifying : ncurses-base-6.4-6.20230520.fc39.noarch 105/153
Verifying : ncurses-libs-6.4-6.20230520.fc39.x86_64 106/153
Verifying : ocaml-srpm-macros-8-2.fc39.noarch 107/153
Verifying : openblas-srpm-macros-2-14.fc39.noarch 108/153
Verifying : openldap-2.6.6-1.fc39.x86_64 109/153
Verifying : openssl-libs-1:3.1.1-1.fc39.x86_64 110/153
Verifying : p11-kit-0.25.0-2.fc39.x86_64 111/153
Verifying : p11-kit-trust-0.25.0-2.fc39.x86_64 112/153
Verifying : package-notes-srpm-macros-0.5-9.fc39.noarch 113/153
Verifying : pam-1.5.3-2.fc39.x86_64 114/153
Verifying : pam-libs-1.5.3-2.fc39.x86_64 115/153
Verifying : patch-2.7.6-22.fc39.x86_64 116/153
Verifying : pcre2-10.42-1.fc39.2.x86_64 117/153
Verifying : pcre2-syntax-10.42-1.fc39.2.noarch 118/153
Verifying : perl-srpm-macros-1-51.fc39.noarch 119/153
Verifying : pkgconf-1.9.5-2.fc39.x86_64 120/153
Verifying : pkgconf-m4-1.9.5-2.fc39.noarch 121/153
Verifying : pkgconf-pkg-config-1.9.5-2.fc39.x86_64 122/153
Verifying : popt-1.19-3.fc39.x86_64 123/153
Verifying : publicsuffix-list-dafsa-20230614-2.fc39.noarch 124/153
Verifying : python-srpm-macros-3.12-2.fc39.noarch 125/153
Verifying : qt5-srpm-macros-5.15.10-2.fc39.noarch 126/153
Verifying : qt6-srpm-macros-6.5.2-2.fc39.noarch 127/153
Verifying : readline-8.2-4.fc39.x86_64 128/153
Verifying : redhat-rpm-config-262-1.fc39.noarch 129/153
Verifying : rpm-4.18.92-1.fc39.x86_64 130/153
Verifying : rpm-build-4.18.92-1.fc39.x86_64 131/153
Verifying : rpm-build-libs-4.18.92-1.fc39.x86_64 132/153
Verifying : rpm-libs-4.18.92-1.fc39.x86_64 133/153
Verifying : rpm-sequoia-1.4.1-2.fc39.x86_64 134/153
Verifying : rpmautospec-rpm-macros-0.3.5-4.fc39.noarch 135/153
Verifying : rust-srpm-macros-24-3.fc39.noarch 136/153
Verifying : sed-4.8-14.fc39.x86_64 137/153
Verifying : setup-2.14.4-1.fc39.noarch 138/153
Verifying : shadow-utils-2:4.13-8.fc39.x86_64 139/153
Verifying : sqlite-libs-3.42.0-7.fc39.x86_64 140/153
Verifying : systemd-libs-254.1-2.fc40.x86_64 141/153
Verifying : tar-2:1.35-1.fc39.x86_64 142/153
Verifying : tzdata-2023c-2.fc39.noarch 143/153
Verifying : unzip-6.0-62.fc39.x86_64 144/153
Verifying : util-linux-2.39.1-3.fc39.x86_64 145/153
Verifying : util-linux-core-2.39.1-3.fc39.x86_64 146/153
Verifying : which-2.21-40.fc39.x86_64 147/153
Verifying : xxhash-libs-0.8.2-1.fc39.x86_64 148/153
Verifying : xz-5.4.4-1.fc39.x86_64 149/153
Verifying : xz-libs-5.4.4-1.fc39.x86_64 150/153
Verifying : zip-3.0-38.fc39.x86_64 151/153
Verifying : zlib-1.2.13-4.fc39.x86_64 152/153
Verifying : zstd-1.5.5-4.fc39.x86_64 153/153
Installed:
alternatives-1.25-1.fc39.x86_64
ansible-srpm-macros-1-11.fc39.noarch
audit-libs-3.1.2-1.fc39.x86_64
authselect-1.4.2-3.fc39.x86_64
authselect-libs-1.4.2-3.fc39.x86_64
basesystem-11-18.fc39.noarch
bash-5.2.15-5.fc39.x86_64
binutils-2.40-13.fc39.x86_64
binutils-gold-2.40-13.fc39.x86_64
bzip2-1.0.8-16.fc39.x86_64
bzip2-libs-1.0.8-16.fc39.x86_64
ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch
coreutils-9.3-2.fc39.x86_64
coreutils-common-9.3-2.fc39.x86_64
cpio-2.14-4.fc39.x86_64
cracklib-2.9.11-2.fc39.x86_64
crypto-policies-20230731-1.git5ed06e0.fc39.noarch
curl-8.2.1-2.fc40.x86_64
cyrus-sasl-lib-2.1.28-11.fc39.x86_64
debugedit-5.0-10.fc39.x86_64
diffutils-3.10-3.fc39.x86_64
dwz-0.15-3.fc39.x86_64
ed-1.19-4.fc39.x86_64
efi-srpm-macros-5-9.fc39.noarch
elfutils-0.189-4.fc39.x86_64
elfutils-debuginfod-client-0.189-4.fc39.x86_64
elfutils-default-yama-scope-0.189-4.fc39.noarch
elfutils-libelf-0.189-4.fc39.x86_64
elfutils-libs-0.189-4.fc39.x86_64
fedora-gpg-keys-40-0.1.noarch
fedora-release-40-0.2.noarch
fedora-release-common-40-0.2.noarch
fedora-release-identity-basic-40-0.2.noarch
fedora-repos-40-0.1.noarch
fedora-repos-rawhide-40-0.1.noarch
file-5.44-5.fc39.x86_64
file-libs-5.44-5.fc39.x86_64
filesystem-3.18-6.fc39.x86_64
findutils-1:4.9.0-5.fc39.x86_64
fonts-srpm-macros-1:2.0.5-12.fc39.noarch
fpc-srpm-macros-1.3-8.fc39.noarch
gawk-5.2.2-2.fc39.x86_64
gdb-minimal-13.2-7.fc39.x86_64
gdbm-libs-1:1.23-4.fc39.x86_64
ghc-srpm-macros-1.6.1-2.fc39.noarch
glibc-2.38-1.fc39.x86_64
glibc-common-2.38-1.fc39.x86_64
glibc-gconv-extra-2.38-1.fc39.x86_64
glibc-minimal-langpack-2.38-1.fc39.x86_64
gmp-1:6.2.1-5.fc39.x86_64
gnat-srpm-macros-6-3.fc39.noarch
go-srpm-macros-3.2.0-6.fc39.noarch
grep-3.11-5.fc40.x86_64
gzip-1.12-6.fc39.x86_64
info-7.0.3-3.fc39.x86_64
jansson-2.13.1-7.fc39.x86_64
kernel-srpm-macros-1.0-20.fc39.noarch
keyutils-libs-1.6.1-7.fc39.x86_64
krb5-libs-1.21-3.fc39.x86_64
libacl-2.3.1-8.fc39.x86_64
libarchive-3.7.1-1.fc39.x86_64
libattr-2.5.1-8.fc39.x86_64
libblkid-2.39.1-3.fc39.x86_64
libbrotli-1.0.9-13.fc39.x86_64
libcap-2.48-7.fc39.x86_64
libcap-ng-0.8.3-7.fc39.x86_64
libcom_err-1.47.0-2.fc39.x86_64
libcurl-8.2.1-2.fc40.x86_64
libdb-5.3.28-56.fc39.x86_64
libeconf-0.4.0-6.fc39.x86_64
libevent-2.1.12-9.fc39.x86_64
libfdisk-2.39.1-3.fc39.x86_64
libffi-3.4.4-4.fc39.x86_64
libgcc-13.2.1-1.fc39.x86_64
libgomp-13.2.1-1.fc39.x86_64
libidn2-2.3.4-3.fc39.x86_64
libmount-2.39.1-3.fc39.x86_64
libnghttp2-1.55.1-2.fc39.x86_64
libnsl2-2.0.0-6.fc39.x86_64
libpkgconf-1.9.5-2.fc39.x86_64
libpsl-0.21.2-4.fc39.x86_64
libpwquality-1.4.5-6.fc39.x86_64
libselinux-3.5-5.fc40.x86_64
libsemanage-3.5-4.fc39.x86_64
libsepol-3.5-2.fc39.x86_64
libsigsegv-2.14-5.fc39.x86_64
libsmartcols-2.39.1-3.fc39.x86_64
libssh-0.10.5-2.fc39.x86_64
libssh-config-0.10.5-2.fc39.noarch
libstdc++-13.2.1-1.fc39.x86_64
libtasn1-4.19.0-3.fc39.x86_64
libtirpc-1.3.3-1.rc2.fc39.x86_64
libunistring-1.1-4.fc39.x86_64
libutempter-1.2.1-10.fc39.x86_64
libuuid-2.39.1-3.fc39.x86_64
libverto-0.3.2-6.fc39.x86_64
libxcrypt-4.4.36-2.fc39.x86_64
libxml2-2.10.4-3.fc39.x86_64
libzstd-1.5.5-4.fc39.x86_64
lua-libs-5.4.6-3.fc39.x86_64
lua-srpm-macros-1-9.fc39.noarch
lz4-libs-1.9.4-4.fc39.x86_64
mpfr-4.2.0-3.fc39.x86_64
ncurses-base-6.4-6.20230520.fc39.noarch
ncurses-libs-6.4-6.20230520.fc39.x86_64
ocaml-srpm-macros-8-2.fc39.noarch
openblas-srpm-macros-2-14.fc39.noarch
openldap-2.6.6-1.fc39.x86_64
openssl-libs-1:3.1.1-1.fc39.x86_64
p11-kit-0.25.0-2.fc39.x86_64
p11-kit-trust-0.25.0-2.fc39.x86_64
package-notes-srpm-macros-0.5-9.fc39.noarch
pam-1.5.3-2.fc39.x86_64
pam-libs-1.5.3-2.fc39.x86_64
patch-2.7.6-22.fc39.x86_64
pcre2-10.42-1.fc39.2.x86_64
pcre2-syntax-10.42-1.fc39.2.noarch
perl-srpm-macros-1-51.fc39.noarch
pkgconf-1.9.5-2.fc39.x86_64
pkgconf-m4-1.9.5-2.fc39.noarch
pkgconf-pkg-config-1.9.5-2.fc39.x86_64
popt-1.19-3.fc39.x86_64
publicsuffix-list-dafsa-20230614-2.fc39.noarch
pyproject-srpm-macros-1.9.0-2.fc40.noarch
python-srpm-macros-3.12-2.fc39.noarch
qt5-srpm-macros-5.15.10-2.fc39.noarch
qt6-srpm-macros-6.5.2-2.fc39.noarch
readline-8.2-4.fc39.x86_64
redhat-rpm-config-262-1.fc39.noarch
rpm-4.18.92-1.fc39.x86_64
rpm-build-4.18.92-1.fc39.x86_64
rpm-build-libs-4.18.92-1.fc39.x86_64
rpm-libs-4.18.92-1.fc39.x86_64
rpm-sequoia-1.4.1-2.fc39.x86_64
rpmautospec-rpm-macros-0.3.5-4.fc39.noarch
rust-srpm-macros-24-3.fc39.noarch
sed-4.8-14.fc39.x86_64
setup-2.14.4-1.fc39.noarch
shadow-utils-2:4.13-8.fc39.x86_64
sqlite-libs-3.42.0-7.fc39.x86_64
systemd-libs-254.1-2.fc40.x86_64
tar-2:1.35-1.fc39.x86_64
tzdata-2023c-2.fc39.noarch
unzip-6.0-62.fc39.x86_64
util-linux-2.39.1-3.fc39.x86_64
util-linux-core-2.39.1-3.fc39.x86_64
which-2.21-40.fc39.x86_64
xxhash-libs-0.8.2-1.fc39.x86_64
xz-5.4.4-1.fc39.x86_64
xz-libs-5.4.4-1.fc39.x86_64
zip-3.0-38.fc39.x86_64
zlib-1.2.13-4.fc39.x86_64
zstd-1.5.5-4.fc39.x86_64
Complete!
Finish: installing minimal buildroot with dnf
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: sqlite-libs-3.42.0-7.fc39.x86_64
curl-8.2.1-2.fc40.x86_64
pyproject-srpm-macros-1.9.0-2.fc40.noarch
libpkgconf-1.9.5-2.fc39.x86_64
xz-5.4.4-1.fc39.x86_64
libarchive-3.7.1-1.fc39.x86_64
efi-srpm-macros-5-9.fc39.noarch
ncurses-libs-6.4-6.20230520.fc39.x86_64
diffutils-3.10-3.fc39.x86_64
libssh-0.10.5-2.fc39.x86_64
glibc-gconv-extra-2.38-1.fc39.x86_64
ansible-srpm-macros-1-11.fc39.noarch
libzstd-1.5.5-4.fc39.x86_64
libevent-2.1.12-9.fc39.x86_64
rpm-sequoia-1.4.1-2.fc39.x86_64
libtirpc-1.3.3-1.rc2.fc39.x86_64
cpio-2.14-4.fc39.x86_64
libblkid-2.39.1-3.fc39.x86_64
pkgconf-pkg-config-1.9.5-2.fc39.x86_64
rpm-build-libs-4.18.92-1.fc39.x86_64
setup-2.14.4-1.fc39.noarch
gawk-5.2.2-2.fc39.x86_64
grep-3.11-5.fc40.x86_64
pkgconf-1.9.5-2.fc39.x86_64
coreutils-9.3-2.fc39.x86_64
findutils-4.9.0-5.fc39.x86_64
kernel-srpm-macros-1.0-20.fc39.noarch
package-notes-srpm-macros-0.5-9.fc39.noarch
libunistring-1.1-4.fc39.x86_64
libnghttp2-1.55.1-2.fc39.x86_64
elfutils-libelf-0.189-4.fc39.x86_64
info-7.0.3-3.fc39.x86_64
unzip-6.0-62.fc39.x86_64
cyrus-sasl-lib-2.1.28-11.fc39.x86_64
libselinux-3.5-5.fc40.x86_64
rpm-build-4.18.92-1.fc39.x86_64
libattr-2.5.1-8.fc39.x86_64
keyutils-libs-1.6.1-7.fc39.x86_64
bash-5.2.15-5.fc39.x86_64
zip-3.0-38.fc39.x86_64
dwz-0.15-3.fc39.x86_64
libeconf-0.4.0-6.fc39.x86_64
util-linux-2.39.1-3.fc39.x86_64
qt6-srpm-macros-6.5.2-2.fc39.noarch
libverto-0.3.2-6.fc39.x86_64
libsmartcols-2.39.1-3.fc39.x86_64
p11-kit-0.25.0-2.fc39.x86_64
patch-2.7.6-22.fc39.x86_64
libpsl-0.21.2-4.fc39.x86_64
rpmautospec-rpm-macros-0.3.5-4.fc39.noarch
qt5-srpm-macros-5.15.10-2.fc39.noarch
krb5-libs-1.21-3.fc39.x86_64
pcre2-10.42-1.fc39.2.x86_64
tzdata-2023c-2.fc39.noarch
audit-libs-3.1.2-1.fc39.x86_64
ed-1.19-4.fc39.x86_64
ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch
fedora-release-40-0.2.noarch
debugedit-5.0-10.fc39.x86_64
go-srpm-macros-3.2.0-6.fc39.noarch
bzip2-libs-1.0.8-16.fc39.x86_64
cracklib-2.9.11-2.fc39.x86_64
ocaml-srpm-macros-8-2.fc39.noarch
glibc-2.38-1.fc39.x86_64
openldap-2.6.6-1.fc39.x86_64
elfutils-0.189-4.fc39.x86_64
gdbm-libs-1.23-4.fc39.x86_64
libcurl-8.2.1-2.fc40.x86_64
fonts-srpm-macros-2.0.5-12.fc39.noarch
sed-4.8-14.fc39.x86_64
xz-libs-5.4.4-1.fc39.x86_64
libidn2-2.3.4-3.fc39.x86_64
fedora-repos-40-0.1.noarch
crypto-policies-20230731-1.git5ed06e0.fc39.noarch
lua-libs-5.4.6-3.fc39.x86_64
libutempter-1.2.1-10.fc39.x86_64
mpfr-4.2.0-3.fc39.x86_64
xxhash-libs-0.8.2-1.fc39.x86_64
redhat-rpm-config-262-1.fc39.noarch
pam-libs-1.5.3-2.fc39.x86_64
openblas-srpm-macros-2-14.fc39.noarch
libffi-3.4.4-4.fc39.x86_64
libsemanage-3.5-4.fc39.x86_64
tar-1.35-1.fc39.x86_64
which-2.21-40.fc39.x86_64
alternatives-1.25-1.fc39.x86_64
readline-8.2-4.fc39.x86_64
pam-1.5.3-2.fc39.x86_64
zlib-1.2.13-4.fc39.x86_64
libsepol-3.5-2.fc39.x86_64
p11-kit-trust-0.25.0-2.fc39.x86_64
systemd-libs-254.1-2.fc40.x86_64
shadow-utils-4.13-8.fc39.x86_64
elfutils-default-yama-scope-0.189-4.fc39.noarch
ghc-srpm-macros-1.6.1-2.fc39.noarch
lz4-libs-1.9.4-4.fc39.x86_64
elfutils-debuginfod-client-0.189-4.fc39.x86_64
libuuid-2.39.1-3.fc39.x86_64
lua-srpm-macros-1-9.fc39.noarch
libnsl2-2.0.0-6.fc39.x86_64
libxml2-2.10.4-3.fc39.x86_64
gdb-minimal-13.2-7.fc39.x86_64
rust-srpm-macros-24-3.fc39.noarch
glibc-minimal-langpack-2.38-1.fc39.x86_64
fedora-release-identity-basic-40-0.2.noarch
jansson-2.13.1-7.fc39.x86_64
binutils-gold-2.40-13.fc39.x86_64
glibc-common-2.38-1.fc39.x86_64
fpc-srpm-macros-1.3-8.fc39.noarch
gzip-1.12-6.fc39.x86_64
pcre2-syntax-10.42-1.fc39.2.noarch
gpg-pubkey-18b8e74c-62f2920f
gnat-srpm-macros-6-3.fc39.noarch
coreutils-common-9.3-2.fc39.x86_64
libtasn1-4.19.0-3.fc39.x86_64
perl-srpm-macros-1-51.fc39.noarch
authselect-1.4.2-3.fc39.x86_64
rpm-libs-4.18.92-1.fc39.x86_64
libpwquality-1.4.5-6.fc39.x86_64
libacl-2.3.1-8.fc39.x86_64
rpm-4.18.92-1.fc39.x86_64
file-libs-5.44-5.fc39.x86_64
libdb-5.3.28-56.fc39.x86_64
libstdc++-13.2.1-1.fc39.x86_64
publicsuffix-list-dafsa-20230614-2.fc39.noarch
gpg-pubkey-a15b79cc-63d04c2c
libgcc-13.2.1-1.fc39.x86_64
libssh-config-0.10.5-2.fc39.noarch
filesystem-3.18-6.fc39.x86_64
authselect-libs-1.4.2-3.fc39.x86_64
libsigsegv-2.14-5.fc39.x86_64
elfutils-libs-0.189-4.fc39.x86_64
zstd-1.5.5-4.fc39.x86_64
libgomp-13.2.1-1.fc39.x86_64
util-linux-core-2.39.1-3.fc39.x86_64
file-5.44-5.fc39.x86_64
bzip2-1.0.8-16.fc39.x86_64
python-srpm-macros-3.12-2.fc39.noarch
libcom_err-1.47.0-2.fc39.x86_64
popt-1.19-3.fc39.x86_64
libfdisk-2.39.1-3.fc39.x86_64
openssl-libs-3.1.1-1.fc39.x86_64
gmp-6.2.1-5.fc39.x86_64
libcap-2.48-7.fc39.x86_64
libxcrypt-4.4.36-2.fc39.x86_64
libbrotli-1.0.9-13.fc39.x86_64
ncurses-base-6.4-6.20230520.fc39.noarch
fedora-gpg-keys-40-0.1.noarch
basesystem-11-18.fc39.noarch
libcap-ng-0.8.3-7.fc39.x86_64
pkgconf-m4-1.9.5-2.fc39.noarch
libmount-2.39.1-3.fc39.x86_64
fedora-repos-rawhide-40-0.1.noarch
fedora-release-common-40-0.2.noarch
binutils-2.40-13.fc39.x86_64
Start: buildsrpm
Start: rpmbuild -bs
warning: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N)
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1689984000
Wrote: /builddir/build/SRPMS/smoldyn-2.67.3-6.fc40.src.rpm
RPM build warnings:
%patchN is deprecated (6 usages found), use %patch N (or %patch -P N)
Finish: rpmbuild -bs
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1692102126.587961/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-x86_64-1692102126.587961/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-x86_64-1692102126.587961/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-39nsww19/smoldyn/smoldyn.spec) Config(child) 0 minutes 47 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/smoldyn-2.67.3-6.fc40.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1692102126.587961 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.0 starting (python version = 3.11.3, NVR = mock-5.0-1.fc38)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/results/smoldyn-2.67.3-6.fc40.src.rpm) Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.0
INFO: Mock Version: 5.0
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1692102126.587961/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1692102126.587961/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Package manager dnf detected and used (fallback)
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1692102126.587961/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf detected and used (direct choice)
Start: dnf update
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 26 kB/s | 1.5 kB 00:00
Copr repository 22 MB/s | 3.8 MB 00:00
fedora 582 kB/s | 22 kB 00:00
fedora 2.6 MB/s | 4.8 MB 00:01
Last metadata expiration check: 0:00:01 ago on Tue Aug 15 12:23:00 2023.
Dependencies resolved.
Nothing to do.
Complete!
Finish: dnf update
Finish: chroot init
Start: build phase for smoldyn-2.67.3-6.fc40.src.rpm
Start: build setup for smoldyn-2.67.3-6.fc40.src.rpm
warning: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N)
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1689984000
Wrote: /builddir/build/SRPMS/smoldyn-2.67.3-6.fc40.src.rpm
RPM build warnings:
%patchN is deprecated (6 usages found), use %patch N (or %patch -P N)
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 5.2 kB/s | 1.5 kB 00:00
Copr repository 15 MB/s | 3.8 MB 00:00
fedora 743 kB/s | 22 kB 00:00
Dependencies resolved.
================================================================================
Package Arch Version Repo Size
================================================================================
Installing:
boost-devel x86_64 1.81.0-6.fc39 fedora 14 M
cmake x86_64 3.27.2-1.fc40 fedora 8.0 M
freeglut-devel x86_64 3.4.0-4.fc39 fedora 945 k
gcc x86_64 13.2.1-1.fc39 fedora 34 M
gcc-c++ x86_64 13.2.1-1.fc39 fedora 13 M
libXi-devel x86_64 1.8.1-2.fc39 fedora 116 k
libXmu-devel x86_64 1.1.4-3.fc39 fedora 27 k
libglvnd-devel x86_64 1:1.6.0-3.fc39 fedora 162 k
libtiff-devel x86_64 4.4.0-7.fc39 fedora 545 k
make x86_64 1:4.4.1-2.fc39 fedora 589 k
perl-macros noarch 4:5.38.0-500.fc39 fedora 12 k
pybind11-devel x86_64 2.11.1-1.fc39 fedora 176 k
python3-devel x86_64 3.12.0~rc1-1.fc40 copr_base 273 k
python3-flaky noarch 3.7.0-12.fc40 copr_base 40 k
python3-matplotlib x86_64 3.7.2-4.fc40 fedora 4.2 M
python3-setuptools noarch 67.7.2-5.fc39 fedora 1.5 M
python3-wheel noarch 1:0.41.1-1.fc40 copr_base 148 k
xorg-x11-server-Xvfb x86_64 1.20.14-24.fc39 fedora 896 k
zlib-devel x86_64 1.2.13-4.fc39 fedora 45 k
Installing dependencies:
abattis-cantarell-vf-fonts noarch 0.301-10.fc39 fedora 121 k
annobin-docs noarch 12.23-1.fc39 fedora 96 k
annobin-plugin-gcc x86_64 12.23-1.fc39 fedora 960 k
boost x86_64 1.81.0-6.fc39 fedora 14 k
boost-atomic x86_64 1.81.0-6.fc39 fedora 20 k
boost-chrono x86_64 1.81.0-6.fc39 fedora 26 k
boost-container x86_64 1.81.0-6.fc39 fedora 40 k
boost-context x86_64 1.81.0-6.fc39 fedora 17 k
boost-contract x86_64 1.81.0-6.fc39 fedora 46 k
boost-coroutine x86_64 1.81.0-6.fc39 fedora 21 k
boost-date-time x86_64 1.81.0-6.fc39 fedora 16 k
boost-fiber x86_64 1.81.0-6.fc39 fedora 42 k
boost-filesystem x86_64 1.81.0-6.fc39 fedora 68 k
boost-graph x86_64 1.81.0-6.fc39 fedora 153 k
boost-iostreams x86_64 1.81.0-6.fc39 fedora 42 k
boost-json x86_64 1.81.0-6.fc39 fedora 111 k
boost-locale x86_64 1.81.0-6.fc39 fedora 222 k
boost-log x86_64 1.81.0-6.fc39 fedora 494 k
boost-math x86_64 1.81.0-6.fc39 fedora 219 k
boost-nowide x86_64 1.81.0-6.fc39 fedora 21 k
boost-numpy3 x86_64 1.81.0-6.fc39 fedora 30 k
boost-program-options x86_64 1.81.0-6.fc39 fedora 110 k
boost-python3 x86_64 1.81.0-6.fc39 fedora 98 k
boost-random x86_64 1.81.0-6.fc39 fedora 25 k
boost-regex x86_64 1.81.0-6.fc39 fedora 112 k
boost-serialization x86_64 1.81.0-6.fc39 fedora 135 k
boost-stacktrace x86_64 1.81.0-6.fc39 fedora 31 k
boost-system x86_64 1.81.0-6.fc39 fedora 16 k
boost-test x86_64 1.81.0-6.fc39 fedora 241 k
boost-thread x86_64 1.81.0-6.fc39 fedora 59 k
boost-timer x86_64 1.81.0-6.fc39 fedora 24 k
boost-type_erasure x86_64 1.81.0-6.fc39 fedora 34 k
boost-wave x86_64 1.81.0-6.fc39 fedora 225 k
cairo x86_64 1.17.8-5.fc39 fedora 705 k
cmake-data noarch 3.27.2-1.fc40 fedora 2.2 M
cmake-filesystem x86_64 3.27.2-1.fc40 fedora 18 k
cmake-rpm-macros noarch 3.27.2-1.fc40 fedora 17 k
cpp x86_64 13.2.1-1.fc39 fedora 11 M
default-fonts-core-sans noarch 4.0-8.fc40 fedora 32 k
dejavu-sans-fonts noarch 2.37-20.fc38 fedora 1.3 M
emacs-filesystem noarch 1:29.1-1.fc39 fedora 8.4 k
expat x86_64 2.5.0-3.fc39 fedora 110 k
flexiblas x86_64 3.3.1-5.fc39 fedora 33 k
flexiblas-netlib x86_64 3.3.1-5.fc39 fedora 3.1 M
flexiblas-openblas-openmp x86_64 3.3.1-5.fc39 fedora 17 k
fontconfig x86_64 2.14.2-4.fc39 fedora 296 k
fonts-filesystem noarch 1:2.0.5-12.fc39 fedora 8.2 k
freeglut x86_64 3.4.0-4.fc39 fedora 154 k
freetype x86_64 2.13.1-2.fc39 fedora 414 k
fribidi x86_64 1.0.13-2.fc39 fedora 91 k
gc x86_64 8.2.2-4.fc39 fedora 110 k
gcc-plugin-annobin x86_64 13.2.1-1.fc39 fedora 47 k
gl-manpages noarch 1.1-28.20190306.fc39 fedora 1.2 M
glib2 x86_64 2.77.2-1.fc40 fedora 2.8 M
glibc-devel x86_64 2.38-1.fc39 fedora 80 k
glibc-headers-x86 noarch 2.38-1.fc39 fedora 565 k
gnutls x86_64 3.8.0-7.fc39 fedora 1.1 M
google-noto-fonts-common noarch 20230801-2.fc40 fedora 17 k
google-noto-sans-vf-fonts noarch 20230801-2.fc40 fedora 583 k
graphite2 x86_64 1.3.14-12.fc39 fedora 95 k
groff-base x86_64 1.23.0-2.fc39 fedora 1.1 M
guile22 x86_64 2.2.7-9.fc39 fedora 6.5 M
harfbuzz x86_64 8.1.1-1.fc39 fedora 949 k
hwdata noarch 0.373-1.fc39 fedora 1.6 M
jbigkit-libs x86_64 2.1-26.fc39 fedora 53 k
jsoncpp x86_64 1.9.5-5.fc39 fedora 99 k
kernel-headers x86_64 6.5.0-0.rc6.git0.1.fc40 fedora 1.5 M
lcms2 x86_64 2.15-2.fc39 fedora 177 k
libICE x86_64 1.0.10-11.fc39 fedora 70 k
libICE-devel x86_64 1.0.10-11.fc39 fedora 46 k
libSM x86_64 1.2.3-13.fc39 fedora 41 k
libSM-devel x86_64 1.2.3-13.fc39 fedora 12 k
libX11 x86_64 1.8.6-2.fc39 fedora 649 k
libX11-common noarch 1.8.6-2.fc39 fedora 175 k
libX11-devel x86_64 1.8.6-2.fc39 fedora 1.0 M
libX11-xcb x86_64 1.8.6-2.fc39 fedora 12 k
libXau x86_64 1.0.11-3.fc39 fedora 31 k
libXau-devel x86_64 1.0.11-3.fc39 fedora 14 k
libXdmcp x86_64 1.1.3-11.fc39 fedora 35 k
libXext x86_64 1.3.5-3.fc39 fedora 39 k
libXext-devel x86_64 1.3.5-3.fc39 fedora 85 k
libXfixes x86_64 6.0.0-6.fc39 fedora 19 k
libXfixes-devel x86_64 6.0.0-6.fc39 fedora 12 k
libXfont2 x86_64 2.0.3-15.fc39 fedora 144 k
libXft x86_64 2.3.8-3.fc39 fedora 72 k
libXi x86_64 1.8.1-2.fc39 fedora 40 k
libXmu x86_64 1.1.4-3.fc39 fedora 76 k
libXrender x86_64 0.9.11-3.fc39 fedora 27 k
libXt x86_64 1.2.1-5.fc39 fedora 178 k
libXt-devel x86_64 1.2.1-5.fc39 fedora 460 k
libXxf86vm x86_64 1.1.5-3.fc39 fedora 18 k
libb2 x86_64 0.98.1-9.fc39 fedora 25 k
libdrm x86_64 2.4.114-3.fc39 fedora 157 k
libdrm-devel x86_64 2.4.114-3.fc39 fedora 173 k
libfontenc x86_64 1.1.6-3.fc39 fedora 32 k
libgfortran x86_64 13.2.1-1.fc39 fedora 903 k
libglvnd x86_64 1:1.6.0-3.fc39 fedora 133 k
libglvnd-core-devel x86_64 1:1.6.0-3.fc39 fedora 17 k
libglvnd-egl x86_64 1:1.6.0-3.fc39 fedora 36 k
libglvnd-gles x86_64 1:1.6.0-3.fc39 fedora 31 k
libglvnd-glx x86_64 1:1.6.0-3.fc39 fedora 142 k
libglvnd-opengl x86_64 1:1.6.0-3.fc39 fedora 42 k
libicu x86_64 73.2-2.fc39 fedora 11 M
libicu-devel x86_64 73.2-2.fc39 fedora 924 k
libimagequant x86_64 4.0.1-5.fc39 fedora 308 k
libjpeg-turbo x86_64 2.1.4-3.fc39 fedora 183 k
libmpc x86_64 1.3.1-3.fc39 fedora 70 k
libpciaccess x86_64 0.16-9.fc39 fedora 26 k
libpciaccess-devel x86_64 0.16-9.fc39 fedora 12 k
libpng x86_64 2:1.6.37-15.fc39 fedora 119 k
libqhull_r x86_64 1:8.0.2-2.fc40 fedora 199 k
libquadmath x86_64 13.2.1-1.fc39 fedora 194 k
libquadmath-devel x86_64 13.2.1-1.fc39 fedora 36 k
libraqm x86_64 0.8.0-5.fc39 fedora 20 k
libstdc++-devel x86_64 13.2.1-1.fc39 fedora 2.6 M
libtiff x86_64 4.4.0-7.fc39 fedora 197 k
libtool-ltdl x86_64 2.4.7-7.fc39 fedora 36 k
libunwind x86_64 1.7.2-1.fc40 fedora 70 k
libuv x86_64 1:1.46.0-2.fc39 fedora 159 k
libwayland-client x86_64 1.22.0-2.fc39 fedora 34 k
libwayland-server x86_64 1.22.0-2.fc39 fedora 42 k
libwebp x86_64 1.3.1-2.fc39 fedora 284 k
libxcb x86_64 1.13.1-12.fc39 fedora 233 k
libxcb-devel x86_64 1.13.1-12.fc39 fedora 1.4 M
libxcrypt-devel x86_64 4.4.36-2.fc39 fedora 30 k
libxkbfile x86_64 1.1.1-3.fc39 fedora 89 k
libxshmfence x86_64 1.3-13.fc39 fedora 12 k
libxslt x86_64 1.1.38-3.fc39 fedora 187 k
mesa-libEGL x86_64 23.2.0~rc2-1.fc40 fedora 132 k
mesa-libGL x86_64 23.2.0~rc2-1.fc40 fedora 175 k
mesa-libGL-devel x86_64 23.2.0~rc2-1.fc40 fedora 36 k
mesa-libGLU x86_64 9.0.3-1.fc39 fedora 160 k
mesa-libGLU-devel x86_64 9.0.3-1.fc39 fedora 12 k
mesa-libgbm x86_64 23.2.0~rc2-1.fc40 fedora 46 k
mesa-libglapi x86_64 23.2.0~rc2-1.fc40 fedora 52 k
mpdecimal x86_64 2.5.1-7.fc39 fedora 89 k
ncurses x86_64 6.4-6.20230520.fc39 fedora 416 k
nettle x86_64 3.9.1-2.fc39 fedora 425 k
openblas x86_64 0.3.21-6.fc39 fedora 35 k
openblas-openmp x86_64 0.3.21-6.fc39 fedora 4.9 M
openjpeg2 x86_64 2.5.0-4.fc39 fedora 178 k
perl-AutoLoader noarch 5.74-500.fc39 fedora 21 k
perl-B x86_64 1.88-500.fc39 fedora 177 k
perl-Carp noarch 1.54-500.fc39 fedora 29 k
perl-Class-Struct noarch 0.68-500.fc39 fedora 22 k
perl-Data-Dumper x86_64 2.188-501.fc39 fedora 56 k
perl-Digest noarch 1.20-500.fc39 fedora 25 k
perl-Digest-MD5 x86_64 2.58-500.fc39 fedora 35 k
perl-DynaLoader x86_64 1.54-500.fc39 fedora 26 k
perl-Encode x86_64 4:3.19-500.fc39 fedora 1.7 M
perl-Errno x86_64 1.37-500.fc39 fedora 15 k
perl-Exporter noarch 5.77-500.fc39 fedora 31 k
perl-Fcntl x86_64 1.15-500.fc39 fedora 20 k
perl-File-Basename noarch 2.86-500.fc39 fedora 17 k
perl-File-Path noarch 2.18-500.fc39 fedora 35 k
perl-File-Temp noarch 1:0.231.100-500.fc39 fedora 58 k
perl-File-stat noarch 1.13-500.fc39 fedora 17 k
perl-FileHandle noarch 2.05-500.fc39 fedora 16 k
perl-Getopt-Long noarch 1:2.54-500.fc39 fedora 60 k
perl-Getopt-Std noarch 1.13-500.fc39 fedora 16 k
perl-HTTP-Tiny noarch 0.088-3.fc39 fedora 56 k
perl-IO x86_64 1.52-500.fc39 fedora 82 k
perl-IO-Socket-IP noarch 0.42-1.fc39 fedora 42 k
perl-IO-Socket-SSL noarch 2.083-3.fc39 fedora 225 k
perl-IPC-Open3 noarch 1.22-500.fc39 fedora 22 k
perl-MIME-Base64 x86_64 3.16-500.fc39 fedora 29 k
perl-Mozilla-CA noarch 20230801-1.fc39 fedora 13 k
perl-Net-SSLeay x86_64 1.92-10.fc39 fedora 360 k
perl-POSIX x86_64 2.13-500.fc39 fedora 97 k
perl-PathTools x86_64 3.89-500.fc39 fedora 87 k
perl-Pod-Escapes noarch 1:1.07-500.fc39 fedora 20 k
perl-Pod-Perldoc noarch 3.28.01-501.fc39 fedora 86 k
perl-Pod-Simple noarch 1:3.45-4.fc39 fedora 218 k
perl-Pod-Usage noarch 4:2.03-500.fc39 fedora 39 k
perl-Scalar-List-Utils x86_64 5:1.63-500.fc39 fedora 72 k
perl-SelectSaver noarch 1.02-500.fc39 fedora 12 k
perl-Socket x86_64 4:2.037-3.fc39 fedora 55 k
perl-Storable x86_64 1:3.32-500.fc39 fedora 99 k
perl-Symbol noarch 1.09-500.fc39 fedora 14 k
perl-Term-ANSIColor noarch 5.01-501.fc39 fedora 47 k
perl-Term-Cap noarch 1.18-500.fc39 fedora 22 k
perl-Text-ParseWords noarch 3.31-500.fc39 fedora 16 k
perl-Text-Tabs+Wrap noarch 2023.0511-3.fc39 fedora 22 k
perl-Time-Local noarch 2:1.350-3.fc39 fedora 34 k
perl-URI noarch 5.19-2.fc39 fedora 120 k
perl-base noarch 2.27-500.fc39 fedora 16 k
perl-constant noarch 1.33-501.fc39 fedora 22 k
perl-if noarch 0.61.000-500.fc39 fedora 14 k
perl-interpreter x86_64 4:5.38.0-500.fc39 fedora 72 k
perl-libnet noarch 3.15-501.fc39 fedora 129 k
perl-libs x86_64 4:5.38.0-500.fc39 fedora 2.3 M
perl-locale noarch 1.10-500.fc39 fedora 14 k
perl-mro x86_64 1.28-500.fc39 fedora 29 k
perl-overload noarch 1.37-500.fc39 fedora 46 k
perl-overloading noarch 0.02-500.fc39 fedora 13 k
perl-parent noarch 1:0.241-500.fc39 fedora 14 k
perl-podlators noarch 1:5.01-500.fc39 fedora 125 k
perl-vars noarch 1.05-500.fc39 fedora 13 k
pixman x86_64 0.42.2-2.fc39 fedora 288 k
pyproject-rpm-macros noarch 1.9.0-2.fc40 copr_base 42 k
python-pip-wheel noarch 23.2.1-1.fc40 copr_base 1.5 M
python-rpm-macros noarch 3.12-2.fc39 fedora 19 k
python3 x86_64 3.12.0~rc1-1.fc40 copr_base 27 k
python3-appdirs noarch 1.4.4-11.fc40 copr_base 23 k
python3-brotli x86_64 1.0.9-13.fc39 fedora 320 k
python3-cairo x86_64 1.24.0-2.fc39 fedora 125 k
python3-charset-normalizer noarch 3.2.0-2.fc40 copr_base 97 k
python3-contourpy x86_64 1.1.0-2.fc39 fedora 237 k
python3-cycler noarch 0.11.0-9.fc40 copr_base 22 k
python3-dateutil noarch 1:2.8.2-10.fc39 fedora 355 k
python3-fonttools x86_64 4.42.0-2.fc40 fedora 2.8 M
python3-fs noarch 2.4.16-5.fc39 fedora 302 k
python3-idna noarch 3.4-4.fc39 fedora 109 k
python3-kiwisolver x86_64 1.4.4-9.fc40 copr_base 67 k
python3-libs x86_64 3.12.0~rc1-1.fc40 copr_base 8.8 M
python3-lxml x86_64 4.9.3-2.fc40 copr_base 1.4 M
python3-matplotlib-data noarch 3.7.2-4.fc40 fedora 538 k
python3-matplotlib-data-fonts noarch 3.7.2-4.fc40 fedora 2.3 M
python3-matplotlib-tk x86_64 3.7.2-4.fc40 fedora 47 k
python3-numpy x86_64 1:1.24.4-2.fc39 fedora 7.8 M
python3-numpy-f2py x86_64 1:1.24.4-2.fc39 fedora 478 k
python3-olefile noarch 0.46-21.fc39 fedora 66 k
python3-packaging noarch 23.1-4.fc39 fedora 114 k
python3-pillow x86_64 10.0.0-2.fc39 fedora 914 k
python3-pillow-tk x86_64 10.0.0-2.fc39 fedora 29 k
python3-pooch noarch 1.5.2-12.fc40 copr_base 114 k
python3-pyparsing noarch 3.0.9-11.fc39 fedora 254 k
python3-pysocks noarch 1.7.1-20.fc39 fedora 39 k
python3-requests noarch 2.28.2-5.fc40 copr_base 142 k
python3-rpm-generators noarch 14-7.fc39 fedora 30 k
python3-rpm-macros noarch 3.12-2.fc39 fedora 14 k
python3-scipy x86_64 1.11.1-1.fc39 fedora 16 M
python3-six noarch 1.16.0-12.fc40 copr_base 41 k
python3-tkinter x86_64 3.12.0~rc1-1.fc40 copr_base 383 k
python3-urllib3 noarch 1.26.16-2.fc40 copr_base 233 k
python3-urllib3+socks noarch 1.26.16-2.fc40 copr_base 10 k
rhash x86_64 1.4.3-3.fc39 fedora 194 k
tcl x86_64 1:8.6.12-6.fc40 fedora 1.1 M
tk x86_64 1:8.6.12-5.fc39 fedora 1.6 M
vim-filesystem noarch 2:9.0.1712-1.fc40 fedora 18 k
xkbcomp x86_64 1.4.6-6.fc39 fedora 101 k
xkeyboard-config noarch 2.39-2.fc39 fedora 962 k
xml-common noarch 0.6.3-61.fc39 fedora 31 k
xorg-x11-proto-devel noarch 2023.2-2.fc39 fedora 298 k
xorg-x11-server-common x86_64 1.20.14-24.fc39 fedora 35 k
xorg-x11-xauth x86_64 1:1.1.2-4.fc39 fedora 35 k
Transaction Summary
================================================================================
Install 265 Packages
Total size: 207 M
Total download size: 192 M
Installed size: 850 M
Downloading Packages:
[SKIPPED] pyproject-rpm-macros-1.9.0-2.fc40.noarch.rpm: Already downloaded
[SKIPPED] python-pip-wheel-23.2.1-1.fc40.noarch.rpm: Already downloaded
[SKIPPED] python3-3.12.0~rc1-1.fc40.x86_64.rpm: Already downloaded
[SKIPPED] python3-charset-normalizer-3.2.0-2.fc40.noarch.rpm: Already downloaded
[SKIPPED] python3-devel-3.12.0~rc1-1.fc40.x86_64.rpm: Already downloaded
[SKIPPED] python3-libs-3.12.0~rc1-1.fc40.x86_64.rpm: Already downloaded
[SKIPPED] python3-lxml-4.9.3-2.fc40.x86_64.rpm: Already downloaded
[SKIPPED] python3-requests-2.28.2-5.fc40.noarch.rpm: Already downloaded
[SKIPPED] python3-six-1.16.0-12.fc40.noarch.rpm: Already downloaded
[SKIPPED] python3-urllib3+socks-1.26.16-2.fc40.noarch.rpm: Already downloaded
[SKIPPED] python3-urllib3-1.26.16-2.fc40.noarch.rpm: Already downloaded
[SKIPPED] python3-wheel-0.41.1-1.fc40.noarch.rpm: Already downloaded
[SKIPPED] emacs-filesystem-29.1-1.fc39.noarch.rpm: Already downloaded
[SKIPPED] expat-2.5.0-3.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libb2-0.98.1-9.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libxslt-1.1.38-3.fc39.x86_64.rpm: Already downloaded
[SKIPPED] mpdecimal-2.5.1-7.fc39.x86_64.rpm: Already downloaded
[SKIPPED] python-rpm-macros-3.12-2.fc39.noarch.rpm: Already downloaded
[SKIPPED] python3-dateutil-2.8.2-10.fc39.noarch.rpm: Already downloaded
[SKIPPED] python3-idna-3.4-4.fc39.noarch.rpm: Already downloaded
[SKIPPED] python3-packaging-23.1-4.fc39.noarch.rpm: Already downloaded
[SKIPPED] python3-pysocks-1.7.1-20.fc39.noarch.rpm: Already downloaded
[SKIPPED] python3-rpm-generators-14-7.fc39.noarch.rpm: Already downloaded
[SKIPPED] python3-rpm-macros-3.12-2.fc39.noarch.rpm: Already downloaded
[SKIPPED] python3-setuptools-67.7.2-5.fc39.noarch.rpm: Already downloaded
(26/265): python3-appdirs-1.4.4-11.fc40.noarch. 247 kB/s | 23 kB 00:00
(27/265): python3-cycler-0.11.0-9.fc40.noarch.r 199 kB/s | 22 kB 00:00
(28/265): python3-flaky-3.7.0-12.fc40.noarch.rp 317 kB/s | 40 kB 00:00
(29/265): python3-kiwisolver-1.4.4-9.fc40.x86_6 1.7 MB/s | 67 kB 00:00
(30/265): python3-pooch-1.5.2-12.fc40.noarch.rp 1.5 MB/s | 114 kB 00:00
(31/265): abattis-cantarell-vf-fonts-0.301-10.f 395 kB/s | 121 kB 00:00
(32/265): python3-tkinter-3.12.0~rc1-1.fc40.x86 891 kB/s | 383 kB 00:00
(33/265): annobin-docs-12.23-1.fc39.noarch.rpm 201 kB/s | 96 kB 00:00
(34/265): boost-atomic-1.81.0-6.fc39.x86_64.rpm 320 kB/s | 20 kB 00:00
(35/265): boost-1.81.0-6.fc39.x86_64.rpm 83 kB/s | 14 kB 00:00
(36/265): boost-chrono-1.81.0-6.fc39.x86_64.rpm 459 kB/s | 26 kB 00:00
(37/265): boost-context-1.81.0-6.fc39.x86_64.rp 318 kB/s | 17 kB 00:00
(38/265): annobin-plugin-gcc-12.23-1.fc39.x86_6 2.3 MB/s | 960 kB 00:00
(39/265): boost-container-1.81.0-6.fc39.x86_64. 299 kB/s | 40 kB 00:00
(40/265): boost-coroutine-1.81.0-6.fc39.x86_64. 370 kB/s | 21 kB 00:00
(41/265): boost-contract-1.81.0-6.fc39.x86_64.r 707 kB/s | 46 kB 00:00
(42/265): boost-fiber-1.81.0-6.fc39.x86_64.rpm 667 kB/s | 42 kB 00:00
(43/265): boost-date-time-1.81.0-6.fc39.x86_64. 133 kB/s | 16 kB 00:00
(44/265): boost-filesystem-1.81.0-6.fc39.x86_64 805 kB/s | 68 kB 00:00
(45/265): boost-iostreams-1.81.0-6.fc39.x86_64. 577 kB/s | 42 kB 00:00
(46/265): boost-json-1.81.0-6.fc39.x86_64.rpm 1.2 MB/s | 111 kB 00:00
(47/265): boost-graph-1.81.0-6.fc39.x86_64.rpm 558 kB/s | 153 kB 00:00
(48/265): boost-locale-1.81.0-6.fc39.x86_64.rpm 2.0 MB/s | 222 kB 00:00
(49/265): boost-math-1.81.0-6.fc39.x86_64.rpm 3.1 MB/s | 219 kB 00:00
(50/265): boost-nowide-1.81.0-6.fc39.x86_64.rpm 429 kB/s | 21 kB 00:00
(51/265): boost-numpy3-1.81.0-6.fc39.x86_64.rpm 590 kB/s | 30 kB 00:00
(52/265): boost-log-1.81.0-6.fc39.x86_64.rpm 1.9 MB/s | 494 kB 00:00
(53/265): boost-python3-1.81.0-6.fc39.x86_64.rp 764 kB/s | 98 kB 00:00
(54/265): boost-program-options-1.81.0-6.fc39.x 686 kB/s | 110 kB 00:00
(55/265): boost-random-1.81.0-6.fc39.x86_64.rpm 484 kB/s | 25 kB 00:00
(56/265): boost-regex-1.81.0-6.fc39.x86_64.rpm 1.9 MB/s | 112 kB 00:00
(57/265): boost-stacktrace-1.81.0-6.fc39.x86_64 605 kB/s | 31 kB 00:00
(58/265): boost-system-1.81.0-6.fc39.x86_64.rpm 331 kB/s | 16 kB 00:00
(59/265): boost-serialization-1.81.0-6.fc39.x86 1.1 MB/s | 135 kB 00:00
(60/265): boost-devel-1.81.0-6.fc39.x86_64.rpm 15 MB/s | 14 MB 00:00
(61/265): boost-test-1.81.0-6.fc39.x86_64.rpm 3.3 MB/s | 241 kB 00:00
(62/265): boost-thread-1.81.0-6.fc39.x86_64.rpm 742 kB/s | 59 kB 00:00
(63/265): boost-timer-1.81.0-6.fc39.x86_64.rpm 429 kB/s | 24 kB 00:00
(64/265): boost-type_erasure-1.81.0-6.fc39.x86_ 666 kB/s | 34 kB 00:00
(65/265): cairo-1.17.8-5.fc39.x86_64.rpm 8.7 MB/s | 705 kB 00:00
(66/265): boost-wave-1.81.0-6.fc39.x86_64.rpm 1.7 MB/s | 225 kB 00:00
(67/265): cmake-filesystem-3.27.2-1.fc40.x86_64 311 kB/s | 18 kB 00:00
(68/265): cmake-data-3.27.2-1.fc40.noarch.rpm 18 MB/s | 2.2 MB 00:00
(69/265): cmake-rpm-macros-3.27.2-1.fc40.noarch 263 kB/s | 17 kB 00:00
(70/265): cmake-3.27.2-1.fc40.x86_64.rpm 21 MB/s | 8.0 MB 00:00
(71/265): dejavu-sans-fonts-2.37-20.fc38.noarch 14 MB/s | 1.3 MB 00:00
(72/265): flexiblas-3.3.1-5.fc39.x86_64.rpm 542 kB/s | 33 kB 00:00
(73/265): default-fonts-core-sans-4.0-8.fc40.no 82 kB/s | 32 kB 00:00
(74/265): flexiblas-openblas-openmp-3.3.1-5.fc3 263 kB/s | 17 kB 00:00
(75/265): flexiblas-netlib-3.3.1-5.fc39.x86_64. 15 MB/s | 3.1 MB 00:00
(76/265): cpp-13.2.1-1.fc39.x86_64.rpm 18 MB/s | 11 MB 00:00
(77/265): fonts-filesystem-2.0.5-12.fc39.noarch 149 kB/s | 8.2 kB 00:00
(78/265): fontconfig-2.14.2-4.fc39.x86_64.rpm 1.8 MB/s | 296 kB 00:00
(79/265): freeglut-3.4.0-4.fc39.x86_64.rpm 2.6 MB/s | 154 kB 00:00
(80/265): freeglut-devel-3.4.0-4.fc39.x86_64.rp 13 MB/s | 945 kB 00:00
(81/265): fribidi-1.0.13-2.fc39.x86_64.rpm 1.5 MB/s | 91 kB 00:00
(82/265): gc-8.2.2-4.fc39.x86_64.rpm 2.2 MB/s | 110 kB 00:00
(83/265): freetype-2.13.1-2.fc39.x86_64.rpm 1.4 MB/s | 414 kB 00:00
(84/265): gcc-c++-13.2.1-1.fc39.x86_64.rpm 41 MB/s | 13 MB 00:00
(85/265): gl-manpages-1.1-28.20190306.fc39.noar 15 MB/s | 1.2 MB 00:00
(86/265): gcc-plugin-annobin-13.2.1-1.fc39.x86_ 200 kB/s | 47 kB 00:00
(87/265): glib2-2.77.2-1.fc40.x86_64.rpm 29 MB/s | 2.8 MB 00:00
(88/265): glibc-headers-x86-2.38-1.fc39.noarch. 9.7 MB/s | 565 kB 00:00
(89/265): gnutls-3.8.0-7.fc39.x86_64.rpm 14 MB/s | 1.1 MB 00:00
(90/265): google-noto-fonts-common-20230801-2.f 349 kB/s | 17 kB 00:00
(91/265): google-noto-sans-vf-fonts-20230801-2. 9.9 MB/s | 583 kB 00:00
(92/265): graphite2-1.3.14-12.fc39.x86_64.rpm 1.6 MB/s | 95 kB 00:00
(93/265): groff-base-1.23.0-2.fc39.x86_64.rpm 17 MB/s | 1.1 MB 00:00
(94/265): glibc-devel-2.38-1.fc39.x86_64.rpm 158 kB/s | 80 kB 00:00
(95/265): guile22-2.2.7-9.fc39.x86_64.rpm 39 MB/s | 6.5 MB 00:00
(96/265): hwdata-0.373-1.fc39.noarch.rpm 21 MB/s | 1.6 MB 00:00
(97/265): jbigkit-libs-2.1-26.fc39.x86_64.rpm 909 kB/s | 53 kB 00:00
(98/265): jsoncpp-1.9.5-5.fc39.x86_64.rpm 1.6 MB/s | 99 kB 00:00
[MIRROR] kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm: Status code: 404 for http://southfront.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/k/kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm (IP: 147.160.170.17)
[MIRROR] kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm: Status code: 404 for https://southfront.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/k/kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm (IP: 2620:13e:3008:16::2)
(99/265): harfbuzz-8.1.1-1.fc39.x86_64.rpm 1.0 MB/s | 949 kB 00:00
(100/265): lcms2-2.15-2.fc39.x86_64.rpm 3.4 MB/s | 177 kB 00:00
(101/265): libICE-1.0.10-11.fc39.x86_64.rpm 1.4 MB/s | 70 kB 00:00
[MIRROR] kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm: Status code: 404 for https://ix-denver.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/k/kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm (IP: 2607:dc0::11)
(102/265): libICE-devel-1.0.10-11.fc39.x86_64.r 808 kB/s | 46 kB 00:00
(103/265): libSM-1.2.3-13.fc39.x86_64.rpm 838 kB/s | 41 kB 00:00
[MIRROR] kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm: Status code: 404 for http://ix-denver.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/k/kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm (IP: 2607:dc0::11)
(104/265): libSM-devel-1.2.3-13.fc39.x86_64.rpm 215 kB/s | 12 kB 00:00
(105/265): libX11-1.8.6-2.fc39.x86_64.rpm 9.3 MB/s | 649 kB 00:00
[MIRROR] kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm: Status code: 404 for https://nnenix.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/k/kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm (IP: 2610:48:200:974::47)
(106/265): libX11-common-1.8.6-2.fc39.noarch.rp 1.8 MB/s | 175 kB 00:00
[MIRROR] kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm: Status code: 404 for http://nnenix.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/k/kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm (IP: 2610:48:200:974::47)
[MIRROR] kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm: Status code: 404 for http://fedora.mirror.constant.com/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/k/kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm (IP: 2001:19f0:1595:1403::1084)
[MIRROR] kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm: Status code: 404 for https://fedora.mirror.constant.com/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/k/kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm (IP: 2001:19f0:1595:1403::1084)
[MIRROR] kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm: Status code: 404 for http://ziply.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/k/kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm (IP: 2605:21c0:1000:4a::53)
(107/265): libX11-devel-1.8.6-2.fc39.x86_64.rpm 3.0 MB/s | 1.0 MB 00:00
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[MIRROR] kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm: Status code: 404 for https://ziply.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/k/kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm (IP: 2605:21c0:1000:4a::53)
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[MIRROR] kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm: Status code: 404 for http://mirror.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/k/kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm (IP: 2620:13b:0:1000::16)
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[MIRROR] kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm: Status code: 404 for https://mirror.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/k/kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm (IP: 2620:13b:0:1000::16)
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[MIRROR] kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm: Status code: 404 for http://mirrors.lug.mtu.edu/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/k/kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm (IP: 141.219.188.21)
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[MIRROR] kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm: Status code: 404 for https://mirrors.lug.mtu.edu/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/k/kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm (IP: 141.219.188.21)
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[MIRROR] kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm: Status code: 404 for https://volico.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/k/kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm (IP: 208.68.237.5)
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[MIRROR] kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm: Status code: 404 for http://volico.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/k/kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm (IP: 208.68.237.5)
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[MIRROR] kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm: Status code: 404 for http://opencolo.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/k/kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm (IP: 2607:f358:1a:15::50)
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[MIRROR] kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm: Status code: 404 for https://opencolo.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/k/kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm (IP: 2607:f358:1a:15::50)
[MIRROR] kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm: Status code: 404 for http://mirror.metrocast.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/k/kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm (IP: 65.175.128.102)
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[MIRROR] kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm: Status code: 404 for http://mirrors.syringanetworks.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/k/kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm (IP: 2605:5800:1:1::7)
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[MIRROR] kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm: Status code: 404 for https://mirrors.ocf.berkeley.edu/fedora/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/k/kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm (IP: 2607:f140:0:32::70)
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[MIRROR] kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm: Status code: 404 for http://mirrors.ocf.berkeley.edu/fedora/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/k/kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm (IP: 2607:f140:0:32::70)
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[MIRROR] kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm: Status code: 404 for http://irltoolkit.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/k/kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm (IP: 2602:fb31::207)
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[MIRROR] kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm: Status code: 404 for https://irltoolkit.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/k/kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm (IP: 2602:fb31::207)
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[MIRROR] kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm: Status code: 404 for http://mirror.math.princeton.edu/pub/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/k/kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm (IP: 128.112.18.21)
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[MIRROR] kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm: Status code: 404 for https://uvermont.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/k/kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm (IP: 2620:104:e000:aa::58)
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[MIRROR] kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm: Status code: 404 for http://uvermont.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/k/kernel-headers-6.5.0-0.rc6.git0.1.fc40.x86_64.rpm (IP: 2620:104:e000:aa::58)
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Verifying : perl-Encode-4:3.19-500.fc39.x86_64 178/265
Verifying : perl-Errno-1.37-500.fc39.x86_64 179/265
Verifying : perl-Exporter-5.77-500.fc39.noarch 180/265
Verifying : perl-Fcntl-1.15-500.fc39.x86_64 181/265
Verifying : perl-File-Basename-2.86-500.fc39.noarch 182/265
Verifying : perl-File-Path-2.18-500.fc39.noarch 183/265
Verifying : perl-File-Temp-1:0.231.100-500.fc39.noarch 184/265
Verifying : perl-File-stat-1.13-500.fc39.noarch 185/265
Verifying : perl-FileHandle-2.05-500.fc39.noarch 186/265
Verifying : perl-Getopt-Long-1:2.54-500.fc39.noarch 187/265
Verifying : perl-Getopt-Std-1.13-500.fc39.noarch 188/265
Verifying : perl-HTTP-Tiny-0.088-3.fc39.noarch 189/265
Verifying : perl-IO-1.52-500.fc39.x86_64 190/265
Verifying : perl-IO-Socket-IP-0.42-1.fc39.noarch 191/265
Verifying : perl-IO-Socket-SSL-2.083-3.fc39.noarch 192/265
Verifying : perl-IPC-Open3-1.22-500.fc39.noarch 193/265
Verifying : perl-MIME-Base64-3.16-500.fc39.x86_64 194/265
Verifying : perl-Mozilla-CA-20230801-1.fc39.noarch 195/265
Verifying : perl-Net-SSLeay-1.92-10.fc39.x86_64 196/265
Verifying : perl-POSIX-2.13-500.fc39.x86_64 197/265
Verifying : perl-PathTools-3.89-500.fc39.x86_64 198/265
Verifying : perl-Pod-Escapes-1:1.07-500.fc39.noarch 199/265
Verifying : perl-Pod-Perldoc-3.28.01-501.fc39.noarch 200/265
Verifying : perl-Pod-Simple-1:3.45-4.fc39.noarch 201/265
Verifying : perl-Pod-Usage-4:2.03-500.fc39.noarch 202/265
Verifying : perl-Scalar-List-Utils-5:1.63-500.fc39.x86_64 203/265
Verifying : perl-SelectSaver-1.02-500.fc39.noarch 204/265
Verifying : perl-Socket-4:2.037-3.fc39.x86_64 205/265
Verifying : perl-Storable-1:3.32-500.fc39.x86_64 206/265
Verifying : perl-Symbol-1.09-500.fc39.noarch 207/265
Verifying : perl-Term-ANSIColor-5.01-501.fc39.noarch 208/265
Verifying : perl-Term-Cap-1.18-500.fc39.noarch 209/265
Verifying : perl-Text-ParseWords-3.31-500.fc39.noarch 210/265
Verifying : perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch 211/265
Verifying : perl-Time-Local-2:1.350-3.fc39.noarch 212/265
Verifying : perl-URI-5.19-2.fc39.noarch 213/265
Verifying : perl-base-2.27-500.fc39.noarch 214/265
Verifying : perl-constant-1.33-501.fc39.noarch 215/265
Verifying : perl-if-0.61.000-500.fc39.noarch 216/265
Verifying : perl-interpreter-4:5.38.0-500.fc39.x86_64 217/265
Verifying : perl-libnet-3.15-501.fc39.noarch 218/265
Verifying : perl-libs-4:5.38.0-500.fc39.x86_64 219/265
Verifying : perl-locale-1.10-500.fc39.noarch 220/265
Verifying : perl-macros-4:5.38.0-500.fc39.noarch 221/265
Verifying : perl-mro-1.28-500.fc39.x86_64 222/265
Verifying : perl-overload-1.37-500.fc39.noarch 223/265
Verifying : perl-overloading-0.02-500.fc39.noarch 224/265
Verifying : perl-parent-1:0.241-500.fc39.noarch 225/265
Verifying : perl-podlators-1:5.01-500.fc39.noarch 226/265
Verifying : perl-vars-1.05-500.fc39.noarch 227/265
Verifying : pixman-0.42.2-2.fc39.x86_64 228/265
Verifying : pybind11-devel-2.11.1-1.fc39.x86_64 229/265
Verifying : python-rpm-macros-3.12-2.fc39.noarch 230/265
Verifying : python3-brotli-1.0.9-13.fc39.x86_64 231/265
Verifying : python3-cairo-1.24.0-2.fc39.x86_64 232/265
Verifying : python3-contourpy-1.1.0-2.fc39.x86_64 233/265
Verifying : python3-dateutil-1:2.8.2-10.fc39.noarch 234/265
Verifying : python3-fonttools-4.42.0-2.fc40.x86_64 235/265
Verifying : python3-fs-2.4.16-5.fc39.noarch 236/265
Verifying : python3-idna-3.4-4.fc39.noarch 237/265
Verifying : python3-matplotlib-3.7.2-4.fc40.x86_64 238/265
Verifying : python3-matplotlib-data-3.7.2-4.fc40.noarch 239/265
Verifying : python3-matplotlib-data-fonts-3.7.2-4.fc40.noarc 240/265
Verifying : python3-matplotlib-tk-3.7.2-4.fc40.x86_64 241/265
Verifying : python3-numpy-1:1.24.4-2.fc39.x86_64 242/265
Verifying : python3-numpy-f2py-1:1.24.4-2.fc39.x86_64 243/265
Verifying : python3-olefile-0.46-21.fc39.noarch 244/265
Verifying : python3-packaging-23.1-4.fc39.noarch 245/265
Verifying : python3-pillow-10.0.0-2.fc39.x86_64 246/265
Verifying : python3-pillow-tk-10.0.0-2.fc39.x86_64 247/265
Verifying : python3-pyparsing-3.0.9-11.fc39.noarch 248/265
Verifying : python3-pysocks-1.7.1-20.fc39.noarch 249/265
Verifying : python3-rpm-generators-14-7.fc39.noarch 250/265
Verifying : python3-rpm-macros-3.12-2.fc39.noarch 251/265
Verifying : python3-scipy-1.11.1-1.fc39.x86_64 252/265
Verifying : python3-setuptools-67.7.2-5.fc39.noarch 253/265
Verifying : rhash-1.4.3-3.fc39.x86_64 254/265
Verifying : tcl-1:8.6.12-6.fc40.x86_64 255/265
Verifying : tk-1:8.6.12-5.fc39.x86_64 256/265
Verifying : vim-filesystem-2:9.0.1712-1.fc40.noarch 257/265
Verifying : xkbcomp-1.4.6-6.fc39.x86_64 258/265
Verifying : xkeyboard-config-2.39-2.fc39.noarch 259/265
Verifying : xml-common-0.6.3-61.fc39.noarch 260/265
Verifying : xorg-x11-proto-devel-2023.2-2.fc39.noarch 261/265
Verifying : xorg-x11-server-Xvfb-1.20.14-24.fc39.x86_64 262/265
Verifying : xorg-x11-server-common-1.20.14-24.fc39.x86_64 263/265
Verifying : xorg-x11-xauth-1:1.1.2-4.fc39.x86_64 264/265
Verifying : zlib-devel-1.2.13-4.fc39.x86_64 265/265
Installed:
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annobin-docs-12.23-1.fc39.noarch
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xkeyboard-config-2.39-2.fc39.noarch
xml-common-0.6.3-61.fc39.noarch
xorg-x11-proto-devel-2023.2-2.fc39.noarch
xorg-x11-server-Xvfb-1.20.14-24.fc39.x86_64
xorg-x11-server-common-1.20.14-24.fc39.x86_64
xorg-x11-xauth-1:1.1.2-4.fc39.x86_64
zlib-devel-1.2.13-4.fc39.x86_64
Complete!
Finish: build setup for smoldyn-2.67.3-6.fc40.src.rpm
Start: rpmbuild smoldyn-2.67.3-6.fc40.src.rpm
warning: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N)
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1689984000
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.vStv5H
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf Smoldyn-2.67.3
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Smoldyn-2.67.3.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd Smoldyn-2.67.3
+ rm -rf /builddir/build/BUILD/Smoldyn-2.67.3-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/Smoldyn-2.67.3-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ echo 'Patch #0 (smoldyn-fix_libpaths.patch):'
Patch #0 (smoldyn-fix_libpaths.patch):
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .fix_libpaths --fuzz=0
patching file CMakeLists.txt
Hunk #1 succeeded at 253 (offset 44 lines).
Hunk #2 succeeded at 269 (offset 44 lines).
Hunk #3 succeeded at 433 (offset 44 lines).
Hunk #4 succeeded at 510 (offset 47 lines).
+ echo 'Patch #1 (smoldyn-freeglut.patch):'
Patch #1 (smoldyn-freeglut.patch):
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .freeglut --fuzz=0
patching file CMakeLists.txt
Hunk #1 succeeded at 365 (offset 39 lines).
+ echo 'Patch #2 (smoldyn-create_soname.patch):'
Patch #2 (smoldyn-create_soname.patch):
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .create_soname --fuzz=0
patching file CMakeLists.txt
Hunk #2 succeeded at 517 (offset 47 lines).
+ echo 'Patch #3 (smoldyn-avoid_automatic_wheel.patch):'
Patch #3 (smoldyn-avoid_automatic_wheel.patch):
+ /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .avoid_automatic_wheel --fuzz=0
patching file source/python/CMakeLists.txt
Hunk #1 succeeded at 20 (offset -3 lines).
+ echo 'Patch #4 (smoldyn-bug121.patch):'
Patch #4 (smoldyn-bug121.patch):
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .bug121 --fuzz=0
patching file tests/test_api.py
+ echo 'Patch #5 (smoldyn-bug123.patch):'
Patch #5 (smoldyn-bug123.patch):
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .bug123 --fuzz=0
patching file tests/test_api.py
+ rm -rf source/MSVClibs
+ rm -rf source/pybind11
+ rm -rf source/BioNetGen source/MinGWlibs Toolchain-mingw32.cmake
+ rm -rf source/vcell/SimpleMesh.cpp source/vcell/SimpleMesh.h source/vcell/SimpleValueProvider.cpp source/vcell/SimpleValueProvider.h source/vcell/zconf.h source/vcell/zlib.h source/vcell/zlib.lib source/NextSubVolume/Eigen
+ rm -rf source/NextSubVolume/boost_include
+ rm -f 'source/vtk/*'
+ find . -type f -name '*.h' -exec chmod 0644 '{}' ';'
+ find . -type f -name '*.c' -exec chmod 0644 '{}' ';'
+ find . -type f -name '*.pdf' -exec chmod 0644 '{}' ';'
+ find . -type f -name '*.txt' -exec chmod 0644 '{}' ';'
+ find . -type f -name '*.txt' -exec sed -i 's/\r$//' '{}' ';'
+ sed -e 's|../../../source/BioNetGen/BNG2.pl|/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl|g' -i examples/S95_regression/lrmsim.txt examples/S12_bionetgen/lrm/lrmsim.txt examples/S12_bionetgen/abba/abbasim.txt examples/S94_archive/Andrews_2016/BioNetGen/lrm/lrmsim.txt examples/S94_archive/Andrews_2016/BioNetGen/abba/abbasim.txt
+ cp -p source/libSteve/SFMT/LICENSE.txt source/libSteve/SFMT/SFMT-LICENSE.txt
+ cp -p source/libSteve/SFMT/README.txt source/libSteve/SFMT/SFMT-README.txt
+ find -name '*.pyc' -delete
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.0TvHPO
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd Smoldyn-2.67.3
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -B build -DCPACK_BINARY_STGZ:BOOL=OFF -DCPACK_BINARY_TGZ:BOOL=OFF -DCPACK_BINARY_TZ:BOOL=OFF -DCPACK_SOURCE_TBZ2:BOOL=OFF -DCPACK_SOURCE_TGZ:BOOL=OFF -DCPACK_SOURCE_TXZ:BOOL=OFF -DCPACK_SOURCE_TZ:BOOL=OFF -DOPTION_VCELL:BOOL=OFF -DOPTION_VTK:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=ON -DSMOLDYN_VERSION:STRING=2.67.3 -DSMOLDYN_VERSION_MAJOR:STRING=2 -DOPTION_TARGET_LIBSMOLDYN:BOOL=ON -DOPTION_STATIC:BOOL=OFF -DOPTION_PYTHON:BOOL=ON -DPYBIND11_FINDPYTHON:BOOL=ON -Dpybind11_DIR:PATH=/usr/share/cmake/pybind11 -DOPTION_USE_ZLIB:BOOL=ON -DOPTION_PDE:BOOL=ON -DPERL_VENDORLIB:PATH=/usr/share/perl5/vendor_perl -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=YES -DHAVE_GL_FREEGLUT_H=TRUE -DOPTION_EXAMPLES:BOOL=OFF -DOPTION_DOCS:BOOL=OFF
-- The CXX compiler identification is GNU 13.2.1
-- The C compiler identification is GNU 13.2.1
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Smoldyn version is set to: '2.67.3'
-- Compiling for Smoldyn: ON
-- Compiling for Libsmoldyn: ON
-- Option to compile Smoldyn for VCell: OFF
-- Option to cross-compile for Windows using MinGW: OFF
-- Option to include NextSubvolume: ON
-- Option to include VTK: OFF
-- Option to compile with static libraries: OFF
-- Option to include OpenGL support: ON
-- Option to include LibTiff: ON
-- Option to include Zlib: ON
-- Option to incude Python module: ON
-- Option to run Libsmoldyn examples: OFF
-- Option to build documentation: OFF
-- Performing Test C_FLAG_EXISTS
-- Performing Test C_FLAG_EXISTS - Success
-- Performing Test CXX_FLAG_EXISTS
-- Performing Test CXX_FLAG_EXISTS - Success
-- [COMPILER] Adding -Wno-unused-parameter
-- Build type: Release
-- Compiling on a Linux computer
-- CMAKE_CXX_FLAGS variable: '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
-- BioNetGen path: '/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl'
-- Found OpenGL: /usr/lib64/libOpenGL.so
-- OpenGL found: '/usr/include', '/usr/lib64/libGL.so;/usr/lib64/libGLU.so'
-- Found GLUT: /usr/lib64/libglut.so
-- Found TIFF: /usr/lib64/libtiff.so (found version "4.4.0")
-- Found Libtiff: '/usr/include', '/usr/lib64/libtiff.so'
-- Found Zlib: '/usr/include', '/usr/lib64/libz.so'
-- Boost headers found: '/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include'
-- Found Python3: /usr/bin/python3.12 (found version "3.12.0") found components: Interpreter Development Development.Module Development.Embed
-- Performing Test HAS_FLTO
-- Performing Test HAS_FLTO - Success
-- Found pybind11: /usr/include (found version "2.11.1")
-- [TEST] Found 15 test scripts
-- Configuring done (1.5s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_Fortran_FLAGS_RELEASE
CMAKE_INSTALL_DO_STRIP
LIB_INSTALL_DIR
SHARE_INSTALL_PREFIX
SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/Smoldyn-2.67.3/build
+ /usr/bin/make -O -j2 V=1 VERBOSE=1 -C build
make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/cmake -S/builddir/build/BUILD/Smoldyn-2.67.3 -B/builddir/build/BUILD/Smoldyn-2.67.3/build --check-build-system CMakeFiles/Makefile.cmake 0
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/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles /builddir/build/BUILD/Smoldyn-2.67.3/build//CMakeFiles/progress.marks
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/math2.c.o -MF CMakeFiles/Steve.dir/math2.c.o.d -o CMakeFiles/Steve.dir/math2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/math2.c
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/random2.c.o -MF CMakeFiles/Steve.dir/random2.c.o.d -o CMakeFiles/Steve.dir/random2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.c
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o -MF CMakeFiles/Steve.dir/RnSort.c.o.d -o CMakeFiles/Steve.dir/RnSort.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/RnSort.c
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o -MF CMakeFiles/Steve.dir/rxnparam.c.o.d -o CMakeFiles/Steve.dir/rxnparam.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/rxnparam.c
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o -MF CMakeFiles/Steve.dir/SimCommand.c.o.d -o CMakeFiles/Steve.dir/SimCommand.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SimCommand.c
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o -MF CMakeFiles/nsv.dir/Geometry.cpp.o.d -o CMakeFiles/nsv.dir/Geometry.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/Geometry.cpp
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/string2.c.o -MF CMakeFiles/Steve.dir/string2.c.o.d -o CMakeFiles/Steve.dir/string2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/string2.c
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o -MF CMakeFiles/Steve.dir/SurfaceParam.c.o.d -o CMakeFiles/Steve.dir/SurfaceParam.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SurfaceParam.c
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Zn.c.o -MF CMakeFiles/Steve.dir/Zn.c.o.d -o CMakeFiles/Steve.dir/Zn.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Zn.c
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o -MF CMakeFiles/Steve.dir/SFMT/SFMT.c.o.d -o CMakeFiles/Steve.dir/SFMT/SFMT.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SFMT/SFMT.c
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[ 29%] Built target Steve
make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
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[ 25%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o -MF CMakeFiles/nsv.dir/nsvc.cpp.o.d -o CMakeFiles/nsv.dir/nsvc.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/nsvc.cpp
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_static.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_shared.dir/DependInfo.cmake "--color="
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[ 30%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o
/usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
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[ 32%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
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[ 34%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists':
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17,
from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13:
/usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here
675 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 33%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o
/usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists':
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17,
from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13:
/usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here
675 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 35%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o
/usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 37%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o
/usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists':
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17,
from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13:
/usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here
675 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c
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[ 74%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcomparts.c
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[ 75%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolfilament.c
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[ 76%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolgraphics.c
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[ 77%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolmolec.c
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[ 79%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolport.c
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[ 80%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smollattice.c
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[ 81%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolreact.c
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[ 82%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolrule.c
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[ 83%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:15,
from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp:27:
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::func_' [-Wattributes]
20 | class CallbackFunc
| ^~~~~~~~~~~~
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::target_' [-Wattributes]
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::args_' [-Wattributes]
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 67%] Linking CXX shared library libsmoldyn_shared.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn_shared.dir/link.txt --verbose=1
/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libsmoldyn_shared.so.2 -o libsmoldyn_shared.so.2.67.3 CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o source/libSteve/CMakeFiles/Steve.dir/List.c.o source/libSteve/CMakeFiles/Steve.dir/math2.c.o source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so
/usr/bin/cmake -E cmake_symlink_library libsmoldyn_shared.so.2.67.3 libsmoldyn_shared.so.2 libsmoldyn_shared.so
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: warning: type 'struct latticestruct' violates the C++ One Definition Rule [-Wodr]
714 | typedef struct latticestruct
| ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit
714 | typedef struct latticestruct
| ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field 'nsv'
739 | NextSubvolumeMethod* nsv; // nsv class
| ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit
739 | NextSubvolumeMethod* nsv; // nsv class
| ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: type name 'NextSubvolumeMethod' should match type name 'Kairos::NextSubvolumeMethod'
714 | typedef struct latticestruct
| ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here
137 | class NextSubvolumeMethod
| ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists':
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr));
| ^
/usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here
675 | extern void *calloc (size_t __nmemb, size_t __size)
| ^
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cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/libsmoldyn.cpp
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In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:15,
from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/libsmoldyn.cpp:15:
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::func_' [-Wattributes]
20 | class CallbackFunc
| ^~~~~~~~~~~~
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::target_' [-Wattributes]
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::args_' [-Wattributes]
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/usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -flto -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o CMakeFiles/_smoldyn.dir/Command.cpp.o CMakeFiles/_smoldyn.dir/Simulation.cpp.o CMakeFiles/_smoldyn.dir/module.cpp.o lib_pysmoldyn.a /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/strip /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so
/builddir/build/BUILD/Smoldyn-2.67.3/source/python/../Smoldyn/smoldyn.h:1044:16: warning: type 'struct simstruct' violates the C++ One Definition Rule [-Wodr]
1044 | typedef struct simstruct
| ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:1044:16: note: a different type is defined in another translation unit
1044 | typedef struct simstruct
| ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/python/../Smoldyn/smoldyn.h:1104:19: note: the first difference of corresponding definitions is field 'callbacks'
1104 | CallbackFunc* callbacks[MAX_PY_CALLBACK]; // Python callback.
| ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:1044:16: note: a type with different number of fields is defined in another translation unit
1044 | typedef struct simstruct
| ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: warning: type 'struct latticestruct' violates the C++ One Definition Rule [-Wodr]
714 | typedef struct latticestruct
| ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit
714 | typedef struct latticestruct
| ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field 'nsv'
739 | NextSubvolumeMethod* nsv; // nsv class
| ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit
739 | NextSubvolumeMethod* nsv; // nsv class
| ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: type name 'NextSubvolumeMethod' should match type name 'Kairos::NextSubvolumeMethod'
714 | typedef struct latticestruct
| ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here
137 | class NextSubvolumeMethod
| ^
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists':
/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr));
| ^
/usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here
675 | extern void *calloc (size_t __nmemb, size_t __size)
| ^
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 97%] Built target _smoldyn
make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/depend
/usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/wheel.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/build
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/copy_python_tree.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/build
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[100%] Copying python source tree to binary directory
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[100%] Built target copy_python_tree
make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 98%] Generating wheel in /builddir/build/BUILD/Smoldyn-2.67.3/build
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/py && /usr/bin/python3.12 setup.py bdist_wheel -d /builddir/build/BUILD/Smoldyn-2.67.3/build
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-cpython-312
creating build/lib.linux-x86_64-cpython-312/smoldyn
copying smoldyn/__init__.py -> build/lib.linux-x86_64-cpython-312/smoldyn
copying smoldyn/__main__.py -> build/lib.linux-x86_64-cpython-312/smoldyn
copying smoldyn/smoldyn.py -> build/lib.linux-x86_64-cpython-312/smoldyn
copying smoldyn/types.py -> build/lib.linux-x86_64-cpython-312/smoldyn
copying smoldyn/utils.py -> build/lib.linux-x86_64-cpython-312/smoldyn
creating build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators
copying smoldyn/biosimulators/__init__.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators
copying smoldyn/biosimulators/__main__.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators
copying smoldyn/biosimulators/_version.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators
copying smoldyn/biosimulators/combine.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators
copying smoldyn/biosimulators/data_model.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators
copying smoldyn/biosimulators/utils.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators
copying smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so -> build/lib.linux-x86_64-cpython-312/smoldyn
running build_ext
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-312/smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/smoldyn
creating build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/data_model.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/combine.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/_version.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-312/smoldyn/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-312/smoldyn/types.py -> build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-312/smoldyn/smoldyn.py -> build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-312/smoldyn/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-312/smoldyn/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn
running install_egg_info
running egg_info
creating smoldyn.egg-info
writing smoldyn.egg-info/PKG-INFO
writing dependency_links to smoldyn.egg-info/dependency_links.txt
writing requirements to smoldyn.egg-info/requires.txt
writing top-level names to smoldyn.egg-info/top_level.txt
writing manifest file 'smoldyn.egg-info/SOURCES.txt'
reading manifest file 'smoldyn.egg-info/SOURCES.txt'
writing manifest file 'smoldyn.egg-info/SOURCES.txt'
Copying smoldyn.egg-info to build/bdist.linux-x86_64/wheel/smoldyn-2.67.3-py3.12.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/smoldyn-2.67.3.dist-info/WHEEL
creating '/builddir/build/BUILD/Smoldyn-2.67.3/build/smoldyn-2.67.3-cp312-cp312-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'smoldyn/__init__.py'
adding 'smoldyn/__main__.py'
adding 'smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so'
adding 'smoldyn/smoldyn.py'
adding 'smoldyn/types.py'
adding 'smoldyn/utils.py'
adding 'smoldyn/biosimulators/__init__.py'
adding 'smoldyn/biosimulators/__main__.py'
adding 'smoldyn/biosimulators/_version.py'
adding 'smoldyn/biosimulators/combine.py'
adding 'smoldyn/biosimulators/data_model.py'
adding 'smoldyn/biosimulators/utils.py'
adding 'smoldyn-2.67.3.dist-info/METADATA'
adding 'smoldyn-2.67.3.dist-info/WHEEL'
adding 'smoldyn-2.67.3.dist-info/top_level.txt'
adding 'smoldyn-2.67.3.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
/usr/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer, pypa/build or
other standards-based tools.
Follow the current Python packaging guidelines when building
Python RPM packages.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html
and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details.
********************************************************************************
!!
self.initialize_options()
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[100%] Built target wheel
make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles 0
make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Zp5cMu
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64
++ dirname /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd Smoldyn-2.67.3
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64 'INSTALL=/usr/bin/install -p' -C build
make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/cmake -S/builddir/build/BUILD/Smoldyn-2.67.3 -B/builddir/build/BUILD/Smoldyn-2.67.3/build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles /builddir/build/BUILD/Smoldyn-2.67.3/build//CMakeFiles/progress.marks
/usr/bin/make -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume/CMakeFiles/nsv.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/build
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make[2]: Nothing to be done for 'source/NextSubVolume/CMakeFiles/nsv.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 9%] Built target nsv
/usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve/CMakeFiles/Steve.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/build
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make[2]: Nothing to be done for 'source/libSteve/CMakeFiles/Steve.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 29%] Built target Steve
/usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_static.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/build
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make[2]: Nothing to be done for 'CMakeFiles/smoldyn_static.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 49%] Built target smoldyn_static
/usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_shared.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/build
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make[2]: Nothing to be done for 'CMakeFiles/smoldyn_shared.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 69%] Built target smoldyn_shared
/usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/build
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make[2]: Nothing to be done for 'CMakeFiles/smoldyn.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 71%] Built target smoldyn
/usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_pysmoldyn.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/build
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make[2]: Nothing to be done for 'source/python/CMakeFiles/_pysmoldyn.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 91%] Built target _pysmoldyn
/usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_smoldyn.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/build
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make[2]: Nothing to be done for 'source/python/CMakeFiles/_smoldyn.dir/build'.
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 97%] Built target _smoldyn
/usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/copy_python_tree.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/build
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 98%] Copying python source tree to binary directory
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[ 98%] Built target copy_python_tree
/usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/depend
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/wheel.dir/DependInfo.cmake "--color="
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/build
make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[100%] Generating wheel in /builddir/build/BUILD/Smoldyn-2.67.3/build
cd /builddir/build/BUILD/Smoldyn-2.67.3/build/py && /usr/bin/python3.12 setup.py bdist_wheel -d /builddir/build/BUILD/Smoldyn-2.67.3/build
running bdist_wheel
running build
running build_py
copying smoldyn/__init__.py -> build/lib.linux-x86_64-cpython-312/smoldyn
copying smoldyn/__main__.py -> build/lib.linux-x86_64-cpython-312/smoldyn
copying smoldyn/smoldyn.py -> build/lib.linux-x86_64-cpython-312/smoldyn
copying smoldyn/types.py -> build/lib.linux-x86_64-cpython-312/smoldyn
copying smoldyn/utils.py -> build/lib.linux-x86_64-cpython-312/smoldyn
copying smoldyn/biosimulators/__init__.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators
copying smoldyn/biosimulators/__main__.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators
copying smoldyn/biosimulators/_version.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators
copying smoldyn/biosimulators/combine.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators
copying smoldyn/biosimulators/data_model.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators
copying smoldyn/biosimulators/utils.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators
copying smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so -> build/lib.linux-x86_64-cpython-312/smoldyn
running build_ext
/usr/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer, pypa/build or
other standards-based tools.
Follow the current Python packaging guidelines when building
Python RPM packages.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html
and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details.
********************************************************************************
!!
self.initialize_options()
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-312/smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-312/smoldyn/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-312/smoldyn/types.py -> build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-312/smoldyn/smoldyn.py -> build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-312/smoldyn/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn
copying build/lib.linux-x86_64-cpython-312/smoldyn/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn
creating build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/data_model.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/combine.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/_version.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators
running install_egg_info
running egg_info
writing smoldyn.egg-info/PKG-INFO
writing dependency_links to smoldyn.egg-info/dependency_links.txt
writing requirements to smoldyn.egg-info/requires.txt
writing top-level names to smoldyn.egg-info/top_level.txt
reading manifest file 'smoldyn.egg-info/SOURCES.txt'
writing manifest file 'smoldyn.egg-info/SOURCES.txt'
Copying smoldyn.egg-info to build/bdist.linux-x86_64/wheel/smoldyn-2.67.3-py3.12.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/smoldyn-2.67.3.dist-info/WHEEL
creating '/builddir/build/BUILD/Smoldyn-2.67.3/build/smoldyn-2.67.3-cp312-cp312-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'smoldyn/__init__.py'
adding 'smoldyn/__main__.py'
adding 'smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so'
adding 'smoldyn/smoldyn.py'
adding 'smoldyn/types.py'
adding 'smoldyn/utils.py'
adding 'smoldyn/biosimulators/__init__.py'
adding 'smoldyn/biosimulators/__main__.py'
adding 'smoldyn/biosimulators/_version.py'
adding 'smoldyn/biosimulators/combine.py'
adding 'smoldyn/biosimulators/data_model.py'
adding 'smoldyn/biosimulators/utils.py'
adding 'smoldyn-2.67.3.dist-info/METADATA'
adding 'smoldyn-2.67.3.dist-info/WHEEL'
adding 'smoldyn-2.67.3.dist-info/top_level.txt'
adding 'smoldyn-2.67.3.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
[100%] Built target wheel
make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles 0
/usr/bin/make -f CMakeFiles/Makefile2 preinstall
make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
make[1]: Nothing to be done for 'preinstall'.
make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/bin/smoldyn
-- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/lib64/libsmoldyn_shared.so.2.67.3
-- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/lib64/libsmoldyn_shared.so.2
-- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/lib64/libsmoldyn_shared.so
-- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/lib64/libsmoldyn_static.a
-- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/include/smoldyn/libsmoldyn.h
-- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/include/smoldyn/smoldyn.h
-- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/include/smoldyn/smoldynconfigure.h
make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build'
+ pushd build/py
~/build/BUILD/Smoldyn-2.67.3/build/py ~/build/BUILD/Smoldyn-2.67.3
+ mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/lib64/python3.12/site-packages
+ cp -a smoldyn smoldyn.egg-info /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/lib64/python3.12/site-packages/
+ popd
~/build/BUILD/Smoldyn-2.67.3
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.67.3-6.fc40 --unique-debug-suffix -2.67.3-6.fc40.x86_64 --unique-debug-src-base smoldyn-2.67.3-6.fc40.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/Smoldyn-2.67.3
find-debuginfo: starting
Extracting debug info from 2 files
DWARF-compressing 2 files
sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/smoldyn-2.67.3-6.fc40.x86_64
3516 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
Bytecompiling .py files below /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/lib64/python3.12 using python3.12
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.ulbFAG
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd Smoldyn-2.67.3
+ cd build
+ export LD_LIBRARY_PATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/lib64
+ LD_LIBRARY_PATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/lib64
+ export PYTHONPATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/lib64/python3.12/site-packages
+ PYTHONPATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/lib64/python3.12/site-packages
+ xvfb-run ctest -j1 -VV -R 'test_api|test_sanity|test_biosimulator' --output-on-failure --debug
/builddir/build/BUILD/cmake-3.27.2/Source/cmCTest.cxx:424 Here: 424
/builddir/build/BUILD/cmake-3.27.2/Source/cmCTest.cxx:709 UpdateCTestConfiguration from :/builddir/build/BUILD/Smoldyn-2.67.3/build/DartConfiguration.tcl
/builddir/build/BUILD/cmake-3.27.2/Source/cmCTest.cxx:436 Here: 436
/builddir/build/BUILD/cmake-3.27.2/Source/cmCTest.cxx:3036 * Read custom CTest configuration directory: /builddir/build/BUILD/Smoldyn-2.67.3/build
/builddir/build/BUILD/cmake-3.27.2/Source/cmCTest.cxx:3041 * Check for file: /builddir/build/BUILD/Smoldyn-2.67.3/build/CTestCustom.cmake
/builddir/build/BUILD/cmake-3.27.2/Source/cmCTest.cxx:3061 * Check for file: /builddir/build/BUILD/Smoldyn-2.67.3/build/CTestCustom.ctest
/builddir/build/BUILD/cmake-3.27.2/Source/cmCTest.cxx:709 UpdateCTestConfiguration from :/builddir/build/BUILD/Smoldyn-2.67.3/build/DartConfiguration.tcl
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:408 Test project /builddir/build/BUILD/Smoldyn-2.67.3/build
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:1783 Constructing a list of tests
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_actions
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_api
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_biosimulators
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_concurrent_simulation
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_connect_func
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_connect_var
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_data_in_array
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_data_outputfile
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_getters
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_issue_118
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_libsmoldyn
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_multiple_iterations
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_prd_placement
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_sanity
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_sim_from_file
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:1834 Done constructing a list of tests
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:984 Updating test list for fixtures
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:1207 Added 0 tests to meet fixture requirements
/builddir/build/BUILD/cmake-3.27.2/Source/cmCTest.cxx:309 Current_Time: Aug 15 12:25 UTC
/builddir/build/BUILD/cmake-3.27.2/Source/cmCTest.cxx:309 Current_Time: Aug 15 12:25 UTC
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestMultiProcessHandler.cxx:1414 Checking test dependency graph...
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestMultiProcessHandler.cxx:1443 Checking test dependency graph end
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestMultiProcessHandler.cxx:168 test 2
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:526 Start 2: test_api
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:687
2: Test command: /usr/bin/python3.12 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_api.py"
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:695 2: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:703 2: Environment variables:
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:708 2: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:708 2: SMOLDYN_NO_PROMPT=1
/builddir/build/BUILD/cmake-3.27.2/Source/cmCTest.cxx:309 Current_Time: Aug 15 12:25 UTC
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:806 2: Test timeout computed to be: 10000000
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:985 1/3 Test #2: test_api .........................
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:988 Testing test_api ...
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:256 Passed 0.25 sec
/builddir/build/BUILD/cmake-3.27.2/Source/cmCTest.cxx:309 Current_Time: Aug 15 12:25 UTC
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestMultiProcessHandler.cxx:168 test 3
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:526 Start 3: test_biosimulators
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:687
3: Test command: /usr/bin/python3.12 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_biosimulators.py"
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:695 3: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:703 3: Environment variables:
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:708 3: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:708 3: SMOLDYN_NO_PROMPT=1
/builddir/build/BUILD/cmake-3.27.2/Source/cmCTest.cxx:309 Current_Time: Aug 15 12:25 UTC
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:806 3: Test timeout computed to be: 10000000
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:39 3: ssssssssssssssssssssssss
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:39 3: ----------------------------------------------------------------------
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:39 3: Ran 24 tests in 0.001s
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:39 3:
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:39 3: OK (skipped=24)
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:985 2/3 Test #3: test_biosimulators ...............
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:988 Testing test_biosimulators ...
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:256 Passed 0.27 sec
/builddir/build/BUILD/cmake-3.27.2/Source/cmCTest.cxx:309 Current_Time: Aug 15 12:25 UTC
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestMultiProcessHandler.cxx:168 test 14
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:526 Start 14: test_sanity
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:687
14: Test command: /usr/bin/python3.12 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_sanity.py"
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:695 14: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:703 14: Environment variables:
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:708 14: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:708 14: SMOLDYN_NO_PROMPT=1
/builddir/build/BUILD/cmake-3.27.2/Source/cmCTest.cxx:309 Current_Time: Aug 15 12:25 UTC
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:806 14: Test timeout computed to be: 10000000
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:39 14: Using smoldyn from /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn/__init__.py
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:39 14: test_newcursim
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:39 14: <smoldyn._smoldyn.simstruct object at 0x7ffa1f664670>
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:39 14: Testing test_get_err
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:39 14: (<ErrorCode.ok: 0>, '')
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:985 3/3 Test #14: test_sanity ......................
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:988 Testing test_sanity ...
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestRunTest.cxx:256 Passed 0.23 sec
/builddir/build/BUILD/cmake-3.27.2/Source/cmCTest.cxx:309 Current_Time: Aug 15 12:25 UTC
/builddir/build/BUILD/cmake-3.27.2/Source/cmCTest.cxx:309 Current_Time: Aug 15 12:25 UTC
/builddir/build/BUILD/cmake-3.27.2/Source/cmCTest.cxx:309 Current_Time: Aug 15 12:25 UTC
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:447
The following tests passed:
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:452 test_api
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:452 test_biosimulators
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:452 test_sanity
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:613
100% tests passed, 0 tests failed out of 3
/builddir/build/BUILD/cmake-3.27.2/Source/CTest/cmCTestTestHandler.cxx:629
Total Test time (real) = 0.76 sec
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: smoldyn-2.67.3-6.fc40.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.lzZ7Ct
+ umask 022
+ cd /builddir/build/BUILD
+ cd Smoldyn-2.67.3
+ DOCDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/doc/smoldyn
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/doc/smoldyn
+ cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/Using-Smoldyn-with-SED-ML-COMBINE-BioSimulators.md /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/doc/smoldyn
+ cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/README.md /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/doc/smoldyn
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bundled(SFMT) = 1.3.3 smoldyn = 2.67.3-6.fc40 smoldyn(x86-64) = 2.67.3-6.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libsmoldyn_shared.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) rtld(GNU_HASH)
Processing files: smoldyn-doc-2.67.3-6.fc40.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.s2UCGR
+ umask 022
+ cd /builddir/build/BUILD
+ cd Smoldyn-2.67.3
+ DOCDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/doc/smoldyn-doc
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/BioNetGen /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/CMakeLists.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/Doxyfile.in /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/README.md /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/SmolCrowd /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/SmolEmulate /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/Smoldyn /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/_static /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/build_doxygen /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/conf.py /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/doxygen /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/examples /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/index.rst /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/libSteve /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/python /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/requirements.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/tikz /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/user /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/doc/smoldyn-doc
+ cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/wrl2smol /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/doc/smoldyn-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: smoldyn-doc = 2.67.3-6.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: smoldyn-libs-2.67.3-6.fc40.x86_64
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.5R24gS
+ umask 022
+ cd /builddir/build/BUILD
+ cd Smoldyn-2.67.3
+ LICENSEDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/licenses/smoldyn-libs
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/licenses/smoldyn-libs
+ cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/License.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/licenses/smoldyn-libs
+ cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/licenses/smoldyn-libs
+ cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/LICENSE /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/licenses/smoldyn-libs
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: libsmoldyn_shared.so.2()(64bit) smoldyn-libs = 2.67.3-6.fc40 smoldyn-libs(x86-64) = 2.67.3-6.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) rtld(GNU_HASH)
Processing files: smoldyn-libs-devel-2.67.3-6.fc40.x86_64
Provides: smoldyn-libs-devel = 2.67.3-6.fc40 smoldyn-libs-devel(x86-64) = 2.67.3-6.fc40 smoldyn-libs-static = 0:2.67.3-6.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libsmoldyn_shared.so.2()(64bit)
Processing files: python3-smoldyn-2.67.3-6.fc40.x86_64
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.tuLgHC
+ umask 022
+ cd /builddir/build/BUILD
+ cd Smoldyn-2.67.3
+ LICENSEDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/licenses/python3-smoldyn
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/licenses/python3-smoldyn
+ cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/License.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/licenses/python3-smoldyn
+ cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/licenses/python3-smoldyn
+ cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/LICENSE /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64/usr/share/licenses/python3-smoldyn
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: python-smoldyn = 2.67.3-6.fc40 python3-smoldyn = 2.67.3-6.fc40 python3-smoldyn(x86-64) = 2.67.3-6.fc40 python3.12-smoldyn = 2.67.3-6.fc40 python3.12dist(smoldyn) = 2.67.3 python3dist(smoldyn) = 2.67.3
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) python(abi) = 3.12 rtld(GNU_HASH)
Obsoletes: python-smoldyn < 2.67.3-6.fc40
Processing files: smoldyn-debugsource-2.67.3-6.fc40.x86_64
Provides: smoldyn-debugsource = 2.67.3-6.fc40 smoldyn-debugsource(x86-64) = 2.67.3-6.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: smoldyn-debuginfo-2.67.3-6.fc40.x86_64
Provides: debuginfo(build-id) = 790bd54b9d93af27f25dba6881b74a37546775ef smoldyn-debuginfo = 2.67.3-6.fc40 smoldyn-debuginfo(x86-64) = 2.67.3-6.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: smoldyn-debugsource(x86-64) = 2.67.3-6.fc40
Processing files: smoldyn-libs-debuginfo-2.67.3-6.fc40.x86_64
Provides: debuginfo(build-id) = 199d419a21e39ffa2ae52b733c7a0d54d3468b3a libsmoldyn_shared.so.2.67.3-2.67.3-6.fc40.x86_64.debug()(64bit) smoldyn-libs-debuginfo = 2.67.3-6.fc40 smoldyn-libs-debuginfo(x86-64) = 2.67.3-6.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: smoldyn-debugsource(x86-64) = 2.67.3-6.fc40
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64
Wrote: /builddir/build/RPMS/smoldyn-libs-debuginfo-2.67.3-6.fc40.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-smoldyn-2.67.3-6.fc40.x86_64.rpm
Wrote: /builddir/build/RPMS/smoldyn-libs-devel-2.67.3-6.fc40.x86_64.rpm
Wrote: /builddir/build/RPMS/smoldyn-debugsource-2.67.3-6.fc40.x86_64.rpm
Wrote: /builddir/build/RPMS/smoldyn-libs-2.67.3-6.fc40.x86_64.rpm
Wrote: /builddir/build/RPMS/smoldyn-debuginfo-2.67.3-6.fc40.x86_64.rpm
Wrote: /builddir/build/RPMS/smoldyn-2.67.3-6.fc40.x86_64.rpm
Wrote: /builddir/build/RPMS/smoldyn-doc-2.67.3-6.fc40.noarch.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.31rygP
+ umask 022
+ cd /builddir/build/BUILD
+ cd Smoldyn-2.67.3
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc40.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.sXQbMB
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf /builddir/build/BUILD/Smoldyn-2.67.3-SPECPARTS
+ rm -rf Smoldyn-2.67.3 Smoldyn-2.67.3.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
RPM build warnings:
%patchN is deprecated (6 usages found), use %patch N (or %patch -P N)
Finish: rpmbuild smoldyn-2.67.3-6.fc40.src.rpm
Finish: build phase for smoldyn-2.67.3-6.fc40.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1692102126.587961/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-x86_64-1692102126.587961/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-x86_64-1692102126.587961/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/smoldyn-2.67.3-6.fc40.src.rpm) Config(child) 2 minutes 52 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool