Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c198' (ED25519) to the list of known hosts.
You can reproduce this build on your computer by running:
sudo dnf install copr-rpmbuild
/usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6279234-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64
Version: 0.68
PID: 13587
Logging PID: 13588
Task:
{'appstream': False,
'background': False,
'build_id': 6279234,
'buildroot_pkgs': [],
'chroot': 'fedora-rawhide-x86_64',
'enable_net': False,
'fedora_review': False,
'git_hash': 'f332c52573efced5c0010cb6dda23ea07f290217',
'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-wheel-92af55f9/snakemake',
'isolation': 'default',
'memory_reqs': 2048,
'package_name': 'snakemake',
'package_version': '7.32.3-1',
'project_dirname': 'python-wheel-92af55f9',
'project_name': 'python-wheel-92af55f9',
'project_owner': 'thrnciar',
'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/thrnciar/python-wheel-92af55f9/fedora-rawhide-x86_64/',
'id': 'copr_base',
'name': 'Copr repository'}],
'sandbox': 'thrnciar/python-wheel-92af55f9--thrnciar',
'source_json': {},
'source_type': None,
'submitter': 'thrnciar',
'tags': [],
'task_id': '6279234-fedora-rawhide-x86_64',
'timeout': 18000,
'uses_devel_repo': False,
'with_opts': [],
'without_opts': []}
Running: git clone https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-wheel-92af55f9/snakemake /var/lib/copr-rpmbuild/workspace/workdir-600herom/snakemake --depth 500 --no-single-branch --recursive
cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/thrnciar/python-wheel-92af55f9/snakemake', '/var/lib/copr-rpmbuild/workspace/workdir-600herom/snakemake', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout:
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-600herom/snakemake'...
Running: git checkout f332c52573efced5c0010cb6dda23ea07f290217 --
cmd: ['git', 'checkout', 'f332c52573efced5c0010cb6dda23ea07f290217', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-600herom/snakemake
rc: 0
stdout:
stderr: Note: switching to 'f332c52573efced5c0010cb6dda23ea07f290217'.
You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.
If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:
git switch -c <new-branch-name>
Or undo this operation with:
git switch -
Turn off this advice by setting config variable advice.detachedHead to false
HEAD is now at f332c52 automatic import of snakemake
Running: copr-distgit-client sources
cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-600herom/snakemake
rc: 0
stdout:
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading snakemake-7.32.3.tar.gz
INFO: Calling: curl -H Pragma: -o snakemake-7.32.3.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/thrnciar/python-wheel-92af55f9/snakemake/snakemake-7.32.3.tar.gz/md5/ee8a567af672dbace0c216cb83bc8207/snakemake-7.32.3.tar.gz
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
100 8678k 100 8678k 0 0 35.5M 0 --:--:-- --:--:-- --:--:-- 35.6M
INFO: Reading stdout from command: md5sum snakemake-7.32.3.tar.gz
Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-600herom/snakemake/snakemake.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-600herom/snakemake --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1692102139.323735 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.0 starting (python version = 3.11.3, NVR = mock-5.0-1.fc38)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-600herom/snakemake/snakemake.spec) Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.0
INFO: Mock Version: 5.0
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1692102139.323735/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1692102139.323735/root
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/a2c9f22408b74714d9cd5219089c17bd0236fe70d5fd6c04f5a7037cac14cbf1/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/a2c9f22408b74714d9cd5219089c17bd0236fe70d5fd6c04f5a7037cac14cbf1/merged) with podman image umount
INFO: Package manager dnf detected and used (fallback)
INFO: Bootstrap image not marked ready
Start(bootstrap): installing dnf tooling
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 16 MB/s | 3.8 MB 00:00
fedora 13 MB/s | 73 MB 00:05
Last metadata expiration check: 0:00:01 ago on Tue Aug 15 12:22:26 2023.
Package python3-dnf-4.16.2-2.fc39.noarch is already installed.
Dependencies resolved.
================================================================================
Package Arch Version Repository Size
================================================================================
Installing:
python3-dnf-plugins-core noarch 4.4.2-1.fc39 fedora 293 k
Installing dependencies:
dbus-libs x86_64 1:1.14.8-2.fc39 fedora 156 k
python3-dateutil noarch 1:2.8.2-10.fc39 fedora 355 k
python3-dbus x86_64 1.3.2-4.fc40 copr_base 147 k
python3-distro noarch 1.8.0-6.fc40 copr_base 45 k
python3-six noarch 1.16.0-12.fc40 copr_base 41 k
python3-systemd x86_64 235-5.fc39 fedora 107 k
Transaction Summary
================================================================================
Install 7 Packages
Total download size: 1.1 M
Installed size: 3.5 M
Downloading Packages:
(1/7): python3-distro-1.8.0-6.fc40.noarch.rpm 1.1 MB/s | 45 kB 00:00
(2/7): python3-six-1.16.0-12.fc40.noarch.rpm 906 kB/s | 41 kB 00:00
(3/7): python3-dbus-1.3.2-4.fc40.x86_64.rpm 2.4 MB/s | 147 kB 00:00
(4/7): dbus-libs-1.14.8-2.fc39.x86_64.rpm 356 kB/s | 156 kB 00:00
(5/7): python3-dnf-plugins-core-4.4.2-1.fc39.no 584 kB/s | 293 kB 00:00
(6/7): python3-dateutil-2.8.2-10.fc39.noarch.rp 684 kB/s | 355 kB 00:00
(7/7): python3-systemd-235-5.fc39.x86_64.rpm 951 kB/s | 107 kB 00:00
--------------------------------------------------------------------------------
Total 1.8 MB/s | 1.1 MB 00:00
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Preparing : 1/1
Installing : python3-systemd-235-5.fc39.x86_64 1/7
Installing : dbus-libs-1:1.14.8-2.fc39.x86_64 2/7
Installing : python3-dbus-1.3.2-4.fc40.x86_64 3/7
Installing : python3-six-1.16.0-12.fc40.noarch 4/7
Installing : python3-dateutil-1:2.8.2-10.fc39.noarch 5/7
Installing : python3-distro-1.8.0-6.fc40.noarch 6/7
Installing : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 7/7
Running scriptlet: python3-dnf-plugins-core-4.4.2-1.fc39.noarch 7/7
Verifying : python3-dbus-1.3.2-4.fc40.x86_64 1/7
Verifying : python3-distro-1.8.0-6.fc40.noarch 2/7
Verifying : python3-six-1.16.0-12.fc40.noarch 3/7
Verifying : dbus-libs-1:1.14.8-2.fc39.x86_64 4/7
Verifying : python3-dateutil-1:2.8.2-10.fc39.noarch 5/7
Verifying : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 6/7
Verifying : python3-systemd-235-5.fc39.x86_64 7/7
Installed:
dbus-libs-1:1.14.8-2.fc39.x86_64
python3-dateutil-1:2.8.2-10.fc39.noarch
python3-dbus-1.3.2-4.fc40.x86_64
python3-distro-1.8.0-6.fc40.noarch
python3-dnf-plugins-core-4.4.2-1.fc39.noarch
python3-six-1.16.0-12.fc40.noarch
python3-systemd-235-5.fc39.x86_64
Complete!
Finish(bootstrap): installing dnf tooling
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1692102139.323735/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf detected and used (direct choice)
Start: installing minimal buildroot with dnf
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 4.4 kB/s | 1.5 kB 00:00
Copr repository 6.8 MB/s | 3.8 MB 00:00
fedora 589 kB/s | 22 kB 00:00
fedora 1.3 MB/s | 1.7 MB 00:01
Dependencies resolved.
================================================================================
Package Arch Version Repo Size
================================================================================
Installing group/module packages:
bash x86_64 5.2.15-5.fc39 fedora 1.8 M
bzip2 x86_64 1.0.8-16.fc39 fedora 52 k
coreutils x86_64 9.3-2.fc39 fedora 1.1 M
cpio x86_64 2.14-4.fc39 fedora 279 k
diffutils x86_64 3.10-3.fc39 fedora 398 k
fedora-release-common noarch 40-0.2 fedora 17 k
findutils x86_64 1:4.9.0-5.fc39 fedora 492 k
gawk x86_64 5.2.2-2.fc39 fedora 1.1 M
glibc-minimal-langpack x86_64 2.38-1.fc39 fedora 67 k
grep x86_64 3.11-5.fc40 fedora 298 k
gzip x86_64 1.12-6.fc39 fedora 166 k
info x86_64 7.0.3-3.fc39 fedora 182 k
patch x86_64 2.7.6-22.fc39 fedora 125 k
redhat-rpm-config noarch 262-1.fc39 fedora 84 k
rpm-build x86_64 4.18.92-1.fc39 fedora 78 k
sed x86_64 4.8-14.fc39 fedora 306 k
shadow-utils x86_64 2:4.13-8.fc39 fedora 1.3 M
tar x86_64 2:1.35-1.fc39 fedora 862 k
unzip x86_64 6.0-62.fc39 fedora 184 k
util-linux x86_64 2.39.1-3.fc39 fedora 1.2 M
which x86_64 2.21-40.fc39 fedora 42 k
xz x86_64 5.4.4-1.fc39 fedora 556 k
Installing dependencies:
alternatives x86_64 1.25-1.fc39 fedora 39 k
ansible-srpm-macros noarch 1-11.fc39 fedora 21 k
audit-libs x86_64 3.1.2-1.fc39 fedora 117 k
authselect x86_64 1.4.2-3.fc39 fedora 144 k
authselect-libs x86_64 1.4.2-3.fc39 fedora 249 k
basesystem noarch 11-18.fc39 fedora 7.2 k
binutils x86_64 2.40-13.fc39 fedora 5.6 M
binutils-gold x86_64 2.40-13.fc39 fedora 797 k
bzip2-libs x86_64 1.0.8-16.fc39 fedora 41 k
ca-certificates noarch 2023.2.60_v7.0.306-2.fc39 fedora 837 k
coreutils-common x86_64 9.3-2.fc39 fedora 2.1 M
cracklib x86_64 2.9.11-2.fc39 fedora 94 k
crypto-policies noarch 20230731-1.git5ed06e0.fc39 fedora 99 k
curl x86_64 8.2.1-2.fc40 fedora 346 k
cyrus-sasl-lib x86_64 2.1.28-11.fc39 fedora 793 k
debugedit x86_64 5.0-10.fc39 fedora 77 k
dwz x86_64 0.15-3.fc39 fedora 134 k
ed x86_64 1.19-4.fc39 fedora 79 k
efi-srpm-macros noarch 5-9.fc39 fedora 22 k
elfutils x86_64 0.189-4.fc39 fedora 537 k
elfutils-debuginfod-client x86_64 0.189-4.fc39 fedora 38 k
elfutils-default-yama-scope noarch 0.189-4.fc39 fedora 13 k
elfutils-libelf x86_64 0.189-4.fc39 fedora 194 k
elfutils-libs x86_64 0.189-4.fc39 fedora 258 k
fedora-gpg-keys noarch 40-0.1 fedora 130 k
fedora-release noarch 40-0.2 fedora 7.2 k
fedora-release-identity-basic
noarch 40-0.2 fedora 8.0 k
fedora-repos noarch 40-0.1 fedora 9.4 k
fedora-repos-rawhide noarch 40-0.1 fedora 9.0 k
file x86_64 5.44-5.fc39 fedora 49 k
file-libs x86_64 5.44-5.fc39 fedora 729 k
filesystem x86_64 3.18-6.fc39 fedora 1.1 M
fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k
fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k
gdb-minimal x86_64 13.2-7.fc39 fedora 4.2 M
gdbm-libs x86_64 1:1.23-4.fc39 fedora 56 k
ghc-srpm-macros noarch 1.6.1-2.fc39 fedora 7.8 k
glibc x86_64 2.38-1.fc39 fedora 2.2 M
glibc-common x86_64 2.38-1.fc39 fedora 348 k
glibc-gconv-extra x86_64 2.38-1.fc39 fedora 1.6 M
gmp x86_64 1:6.2.1-5.fc39 fedora 313 k
gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k
go-srpm-macros noarch 3.2.0-6.fc39 fedora 27 k
jansson x86_64 2.13.1-7.fc39 fedora 44 k
kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k
keyutils-libs x86_64 1.6.1-7.fc39 fedora 31 k
krb5-libs x86_64 1.21-3.fc39 fedora 765 k
libacl x86_64 2.3.1-8.fc39 fedora 23 k
libarchive x86_64 3.7.1-1.fc39 fedora 408 k
libattr x86_64 2.5.1-8.fc39 fedora 18 k
libblkid x86_64 2.39.1-3.fc39 fedora 116 k
libbrotli x86_64 1.0.9-13.fc39 fedora 317 k
libcap x86_64 2.48-7.fc39 fedora 68 k
libcap-ng x86_64 0.8.3-7.fc39 fedora 32 k
libcom_err x86_64 1.47.0-2.fc39 fedora 26 k
libcurl x86_64 8.2.1-2.fc40 fedora 328 k
libdb x86_64 5.3.28-56.fc39 fedora 760 k
libeconf x86_64 0.4.0-6.fc39 fedora 27 k
libevent x86_64 2.1.12-9.fc39 fedora 258 k
libfdisk x86_64 2.39.1-3.fc39 fedora 162 k
libffi x86_64 3.4.4-4.fc39 fedora 40 k
libgcc x86_64 13.2.1-1.fc39 fedora 109 k
libgomp x86_64 13.2.1-1.fc39 fedora 319 k
libidn2 x86_64 2.3.4-3.fc39 fedora 117 k
libmount x86_64 2.39.1-3.fc39 fedora 154 k
libnghttp2 x86_64 1.55.1-2.fc39 fedora 75 k
libnsl2 x86_64 2.0.0-6.fc39 fedora 30 k
libpkgconf x86_64 1.9.5-2.fc39 fedora 38 k
libpsl x86_64 0.21.2-4.fc39 fedora 63 k
libpwquality x86_64 1.4.5-6.fc39 fedora 120 k
libselinux x86_64 3.5-5.fc40 copr_base 87 k
libsemanage x86_64 3.5-4.fc39 fedora 120 k
libsepol x86_64 3.5-2.fc39 fedora 324 k
libsigsegv x86_64 2.14-5.fc39 fedora 27 k
libsmartcols x86_64 2.39.1-3.fc39 fedora 67 k
libssh x86_64 0.10.5-2.fc39 fedora 211 k
libssh-config noarch 0.10.5-2.fc39 fedora 9.2 k
libstdc++ x86_64 13.2.1-1.fc39 fedora 860 k
libtasn1 x86_64 4.19.0-3.fc39 fedora 74 k
libtirpc x86_64 1.3.3-1.rc2.fc39 fedora 94 k
libunistring x86_64 1.1-4.fc39 fedora 543 k
libutempter x86_64 1.2.1-10.fc39 fedora 26 k
libuuid x86_64 2.39.1-3.fc39 fedora 28 k
libverto x86_64 0.3.2-6.fc39 fedora 20 k
libxcrypt x86_64 4.4.36-2.fc39 fedora 119 k
libxml2 x86_64 2.10.4-3.fc39 fedora 701 k
libzstd x86_64 1.5.5-4.fc39 fedora 309 k
lua-libs x86_64 5.4.6-3.fc39 fedora 133 k
lua-srpm-macros noarch 1-9.fc39 fedora 8.6 k
lz4-libs x86_64 1.9.4-4.fc39 fedora 67 k
mpfr x86_64 4.2.0-3.fc39 fedora 344 k
ncurses-base noarch 6.4-6.20230520.fc39 fedora 88 k
ncurses-libs x86_64 6.4-6.20230520.fc39 fedora 336 k
ocaml-srpm-macros noarch 8-2.fc39 fedora 14 k
openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k
openldap x86_64 2.6.6-1.fc39 fedora 255 k
openssl-libs x86_64 1:3.1.1-1.fc39 fedora 2.2 M
p11-kit x86_64 0.25.0-2.fc39 fedora 486 k
p11-kit-trust x86_64 0.25.0-2.fc39 fedora 142 k
package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k
pam x86_64 1.5.3-2.fc39 fedora 548 k
pam-libs x86_64 1.5.3-2.fc39 fedora 58 k
pcre2 x86_64 10.42-1.fc39.2 fedora 233 k
pcre2-syntax noarch 10.42-1.fc39.2 fedora 143 k
perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k
pkgconf x86_64 1.9.5-2.fc39 fedora 42 k
pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k
pkgconf-pkg-config x86_64 1.9.5-2.fc39 fedora 9.6 k
popt x86_64 1.19-3.fc39 fedora 66 k
publicsuffix-list-dafsa noarch 20230614-2.fc39 fedora 57 k
pyproject-srpm-macros noarch 1.9.0-2.fc40 copr_base 15 k
python-srpm-macros noarch 3.12-2.fc39 fedora 25 k
qt5-srpm-macros noarch 5.15.10-2.fc39 fedora 8.3 k
qt6-srpm-macros noarch 6.5.2-2.fc39 fedora 9.2 k
readline x86_64 8.2-4.fc39 fedora 213 k
rpm x86_64 4.18.92-1.fc39 fedora 533 k
rpm-build-libs x86_64 4.18.92-1.fc39 fedora 96 k
rpm-libs x86_64 4.18.92-1.fc39 fedora 312 k
rpm-sequoia x86_64 1.4.1-2.fc39 fedora 869 k
rpmautospec-rpm-macros noarch 0.3.5-4.fc39 fedora 8.8 k
rust-srpm-macros noarch 24-3.fc39 fedora 12 k
setup noarch 2.14.4-1.fc39 fedora 154 k
sqlite-libs x86_64 3.42.0-7.fc39 fedora 678 k
systemd-libs x86_64 254.1-2.fc40 fedora 688 k
tzdata noarch 2023c-2.fc39 fedora 718 k
util-linux-core x86_64 2.39.1-3.fc39 fedora 494 k
xxhash-libs x86_64 0.8.2-1.fc39 fedora 37 k
xz-libs x86_64 5.4.4-1.fc39 fedora 108 k
zip x86_64 3.0-38.fc39 fedora 266 k
zlib x86_64 1.2.13-4.fc39 fedora 94 k
zstd x86_64 1.5.5-4.fc39 fedora 482 k
Installing Groups:
Buildsystem building group
Transaction Summary
================================================================================
Install 153 Packages
Total size: 53 M
Installed size: 180 M
Downloading Packages:
[SKIPPED] libselinux-3.5-5.fc40.x86_64.rpm: Already downloaded
[SKIPPED] pyproject-srpm-macros-1.9.0-2.fc40.noarch.rpm: Already downloaded
[SKIPPED] alternatives-1.25-1.fc39.x86_64.rpm: Already downloaded
[SKIPPED] ansible-srpm-macros-1-11.fc39.noarch.rpm: Already downloaded
[SKIPPED] audit-libs-3.1.2-1.fc39.x86_64.rpm: Already downloaded
[SKIPPED] authselect-1.4.2-3.fc39.x86_64.rpm: Already downloaded
[SKIPPED] authselect-libs-1.4.2-3.fc39.x86_64.rpm: Already downloaded
[SKIPPED] basesystem-11-18.fc39.noarch.rpm: Already downloaded
[SKIPPED] bash-5.2.15-5.fc39.x86_64.rpm: Already downloaded
[SKIPPED] binutils-2.40-13.fc39.x86_64.rpm: Already downloaded
[SKIPPED] binutils-gold-2.40-13.fc39.x86_64.rpm: Already downloaded
[SKIPPED] bzip2-1.0.8-16.fc39.x86_64.rpm: Already downloaded
[SKIPPED] bzip2-libs-1.0.8-16.fc39.x86_64.rpm: Already downloaded
[SKIPPED] ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch.rpm: Already downloaded
[SKIPPED] coreutils-9.3-2.fc39.x86_64.rpm: Already downloaded
[SKIPPED] coreutils-common-9.3-2.fc39.x86_64.rpm: Already downloaded
[SKIPPED] cpio-2.14-4.fc39.x86_64.rpm: Already downloaded
[SKIPPED] cracklib-2.9.11-2.fc39.x86_64.rpm: Already downloaded
[SKIPPED] crypto-policies-20230731-1.git5ed06e0.fc39.noarch.rpm: Already downloaded
[SKIPPED] curl-8.2.1-2.fc40.x86_64.rpm: Already downloaded
[SKIPPED] cyrus-sasl-lib-2.1.28-11.fc39.x86_64.rpm: Already downloaded
[SKIPPED] debugedit-5.0-10.fc39.x86_64.rpm: Already downloaded
[SKIPPED] diffutils-3.10-3.fc39.x86_64.rpm: Already downloaded
[SKIPPED] dwz-0.15-3.fc39.x86_64.rpm: Already downloaded
[SKIPPED] ed-1.19-4.fc39.x86_64.rpm: Already downloaded
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fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0xA15B79CC:
Userid : "Fedora (40) <fedora-40-primary@fedoraproject.org>"
Fingerprint: 115D F9AE F857 853E E844 5D0A 0727 707E A15B 79CC
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary
Key imported successfully
fedora 1.6 MB/s | 1.6 kB 00:00
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary (0xA15B79CC) is already installed
fedora 1.6 MB/s | 1.6 kB 00:00
Importing GPG key 0x18B8E74C:
Userid : "Fedora (39) <fedora-39-primary@fedoraproject.org>"
Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C
From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
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Installing : libcurl-8.2.1-2.fc40.x86_64 128/153
Installing : elfutils-libs-0.189-4.fc39.x86_64 129/153
Installing : elfutils-debuginfod-client-0.189-4.fc39.x86_64 130/153
Installing : binutils-gold-2.40-13.fc39.x86_64 131/153
Running scriptlet: binutils-gold-2.40-13.fc39.x86_64 131/153
Installing : binutils-2.40-13.fc39.x86_64 132/153
Running scriptlet: binutils-2.40-13.fc39.x86_64 132/153
Installing : elfutils-0.189-4.fc39.x86_64 133/153
Installing : gdb-minimal-13.2-7.fc39.x86_64 134/153
Installing : debugedit-5.0-10.fc39.x86_64 135/153
Installing : curl-8.2.1-2.fc40.x86_64 136/153
Installing : rpm-sequoia-1.4.1-2.fc39.x86_64 137/153
Installing : rpm-libs-4.18.92-1.fc39.x86_64 138/153
Running scriptlet: rpm-4.18.92-1.fc39.x86_64 139/153
Installing : rpm-4.18.92-1.fc39.x86_64 139/153
Installing : efi-srpm-macros-5-9.fc39.noarch 140/153
Installing : lua-srpm-macros-1-9.fc39.noarch 141/153
Installing : rpmautospec-rpm-macros-0.3.5-4.fc39.noarch 142/153
Installing : rpm-build-libs-4.18.92-1.fc39.x86_64 143/153
Installing : ansible-srpm-macros-1-11.fc39.noarch 144/153
Installing : pyproject-srpm-macros-1.9.0-2.fc40.noarch 145/153
Installing : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 146/153
Installing : go-srpm-macros-3.2.0-6.fc39.noarch 147/153
Installing : python-srpm-macros-3.12-2.fc39.noarch 148/153
Installing : redhat-rpm-config-262-1.fc39.noarch 149/153
Installing : rpm-build-4.18.92-1.fc39.x86_64 150/153
Installing : util-linux-2.39.1-3.fc39.x86_64 151/153
Installing : which-2.21-40.fc39.x86_64 152/153
Installing : info-7.0.3-3.fc39.x86_64 153/153
Running scriptlet: filesystem-3.18-6.fc39.x86_64 153/153
Running scriptlet: ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch 153/153
Running scriptlet: authselect-libs-1.4.2-3.fc39.x86_64 153/153
Running scriptlet: rpm-4.18.92-1.fc39.x86_64 153/153
Running scriptlet: info-7.0.3-3.fc39.x86_64 153/153
Verifying : libselinux-3.5-5.fc40.x86_64 1/153
Verifying : pyproject-srpm-macros-1.9.0-2.fc40.noarch 2/153
Verifying : alternatives-1.25-1.fc39.x86_64 3/153
Verifying : ansible-srpm-macros-1-11.fc39.noarch 4/153
Verifying : audit-libs-3.1.2-1.fc39.x86_64 5/153
Verifying : authselect-1.4.2-3.fc39.x86_64 6/153
Verifying : authselect-libs-1.4.2-3.fc39.x86_64 7/153
Verifying : basesystem-11-18.fc39.noarch 8/153
Verifying : bash-5.2.15-5.fc39.x86_64 9/153
Verifying : binutils-2.40-13.fc39.x86_64 10/153
Verifying : binutils-gold-2.40-13.fc39.x86_64 11/153
Verifying : bzip2-1.0.8-16.fc39.x86_64 12/153
Verifying : bzip2-libs-1.0.8-16.fc39.x86_64 13/153
Verifying : ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch 14/153
Verifying : coreutils-9.3-2.fc39.x86_64 15/153
Verifying : coreutils-common-9.3-2.fc39.x86_64 16/153
Verifying : cpio-2.14-4.fc39.x86_64 17/153
Verifying : cracklib-2.9.11-2.fc39.x86_64 18/153
Verifying : crypto-policies-20230731-1.git5ed06e0.fc39.noarc 19/153
Verifying : curl-8.2.1-2.fc40.x86_64 20/153
Verifying : cyrus-sasl-lib-2.1.28-11.fc39.x86_64 21/153
Verifying : debugedit-5.0-10.fc39.x86_64 22/153
Verifying : diffutils-3.10-3.fc39.x86_64 23/153
Verifying : dwz-0.15-3.fc39.x86_64 24/153
Verifying : ed-1.19-4.fc39.x86_64 25/153
Verifying : efi-srpm-macros-5-9.fc39.noarch 26/153
Verifying : elfutils-0.189-4.fc39.x86_64 27/153
Verifying : elfutils-debuginfod-client-0.189-4.fc39.x86_64 28/153
Verifying : elfutils-default-yama-scope-0.189-4.fc39.noarch 29/153
Verifying : elfutils-libelf-0.189-4.fc39.x86_64 30/153
Verifying : elfutils-libs-0.189-4.fc39.x86_64 31/153
Verifying : fedora-gpg-keys-40-0.1.noarch 32/153
Verifying : fedora-release-40-0.2.noarch 33/153
Verifying : fedora-release-common-40-0.2.noarch 34/153
Verifying : fedora-release-identity-basic-40-0.2.noarch 35/153
Verifying : fedora-repos-40-0.1.noarch 36/153
Verifying : fedora-repos-rawhide-40-0.1.noarch 37/153
Verifying : file-5.44-5.fc39.x86_64 38/153
Verifying : file-libs-5.44-5.fc39.x86_64 39/153
Verifying : filesystem-3.18-6.fc39.x86_64 40/153
Verifying : findutils-1:4.9.0-5.fc39.x86_64 41/153
Verifying : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 42/153
Verifying : fpc-srpm-macros-1.3-8.fc39.noarch 43/153
Verifying : gawk-5.2.2-2.fc39.x86_64 44/153
Verifying : gdb-minimal-13.2-7.fc39.x86_64 45/153
Verifying : gdbm-libs-1:1.23-4.fc39.x86_64 46/153
Verifying : ghc-srpm-macros-1.6.1-2.fc39.noarch 47/153
Verifying : glibc-2.38-1.fc39.x86_64 48/153
Verifying : glibc-common-2.38-1.fc39.x86_64 49/153
Verifying : glibc-gconv-extra-2.38-1.fc39.x86_64 50/153
Verifying : glibc-minimal-langpack-2.38-1.fc39.x86_64 51/153
Verifying : gmp-1:6.2.1-5.fc39.x86_64 52/153
Verifying : gnat-srpm-macros-6-3.fc39.noarch 53/153
Verifying : go-srpm-macros-3.2.0-6.fc39.noarch 54/153
Verifying : grep-3.11-5.fc40.x86_64 55/153
Verifying : gzip-1.12-6.fc39.x86_64 56/153
Verifying : info-7.0.3-3.fc39.x86_64 57/153
Verifying : jansson-2.13.1-7.fc39.x86_64 58/153
Verifying : kernel-srpm-macros-1.0-20.fc39.noarch 59/153
Verifying : keyutils-libs-1.6.1-7.fc39.x86_64 60/153
Verifying : krb5-libs-1.21-3.fc39.x86_64 61/153
Verifying : libacl-2.3.1-8.fc39.x86_64 62/153
Verifying : libarchive-3.7.1-1.fc39.x86_64 63/153
Verifying : libattr-2.5.1-8.fc39.x86_64 64/153
Verifying : libblkid-2.39.1-3.fc39.x86_64 65/153
Verifying : libbrotli-1.0.9-13.fc39.x86_64 66/153
Verifying : libcap-2.48-7.fc39.x86_64 67/153
Verifying : libcap-ng-0.8.3-7.fc39.x86_64 68/153
Verifying : libcom_err-1.47.0-2.fc39.x86_64 69/153
Verifying : libcurl-8.2.1-2.fc40.x86_64 70/153
Verifying : libdb-5.3.28-56.fc39.x86_64 71/153
Verifying : libeconf-0.4.0-6.fc39.x86_64 72/153
Verifying : libevent-2.1.12-9.fc39.x86_64 73/153
Verifying : libfdisk-2.39.1-3.fc39.x86_64 74/153
Verifying : libffi-3.4.4-4.fc39.x86_64 75/153
Verifying : libgcc-13.2.1-1.fc39.x86_64 76/153
Verifying : libgomp-13.2.1-1.fc39.x86_64 77/153
Verifying : libidn2-2.3.4-3.fc39.x86_64 78/153
Verifying : libmount-2.39.1-3.fc39.x86_64 79/153
Verifying : libnghttp2-1.55.1-2.fc39.x86_64 80/153
Verifying : libnsl2-2.0.0-6.fc39.x86_64 81/153
Verifying : libpkgconf-1.9.5-2.fc39.x86_64 82/153
Verifying : libpsl-0.21.2-4.fc39.x86_64 83/153
Verifying : libpwquality-1.4.5-6.fc39.x86_64 84/153
Verifying : libsemanage-3.5-4.fc39.x86_64 85/153
Verifying : libsepol-3.5-2.fc39.x86_64 86/153
Verifying : libsigsegv-2.14-5.fc39.x86_64 87/153
Verifying : libsmartcols-2.39.1-3.fc39.x86_64 88/153
Verifying : libssh-0.10.5-2.fc39.x86_64 89/153
Verifying : libssh-config-0.10.5-2.fc39.noarch 90/153
Verifying : libstdc++-13.2.1-1.fc39.x86_64 91/153
Verifying : libtasn1-4.19.0-3.fc39.x86_64 92/153
Verifying : libtirpc-1.3.3-1.rc2.fc39.x86_64 93/153
Verifying : libunistring-1.1-4.fc39.x86_64 94/153
Verifying : libutempter-1.2.1-10.fc39.x86_64 95/153
Verifying : libuuid-2.39.1-3.fc39.x86_64 96/153
Verifying : libverto-0.3.2-6.fc39.x86_64 97/153
Verifying : libxcrypt-4.4.36-2.fc39.x86_64 98/153
Verifying : libxml2-2.10.4-3.fc39.x86_64 99/153
Verifying : libzstd-1.5.5-4.fc39.x86_64 100/153
Verifying : lua-libs-5.4.6-3.fc39.x86_64 101/153
Verifying : lua-srpm-macros-1-9.fc39.noarch 102/153
Verifying : lz4-libs-1.9.4-4.fc39.x86_64 103/153
Verifying : mpfr-4.2.0-3.fc39.x86_64 104/153
Verifying : ncurses-base-6.4-6.20230520.fc39.noarch 105/153
Verifying : ncurses-libs-6.4-6.20230520.fc39.x86_64 106/153
Verifying : ocaml-srpm-macros-8-2.fc39.noarch 107/153
Verifying : openblas-srpm-macros-2-14.fc39.noarch 108/153
Verifying : openldap-2.6.6-1.fc39.x86_64 109/153
Verifying : openssl-libs-1:3.1.1-1.fc39.x86_64 110/153
Verifying : p11-kit-0.25.0-2.fc39.x86_64 111/153
Verifying : p11-kit-trust-0.25.0-2.fc39.x86_64 112/153
Verifying : package-notes-srpm-macros-0.5-9.fc39.noarch 113/153
Verifying : pam-1.5.3-2.fc39.x86_64 114/153
Verifying : pam-libs-1.5.3-2.fc39.x86_64 115/153
Verifying : patch-2.7.6-22.fc39.x86_64 116/153
Verifying : pcre2-10.42-1.fc39.2.x86_64 117/153
Verifying : pcre2-syntax-10.42-1.fc39.2.noarch 118/153
Verifying : perl-srpm-macros-1-51.fc39.noarch 119/153
Verifying : pkgconf-1.9.5-2.fc39.x86_64 120/153
Verifying : pkgconf-m4-1.9.5-2.fc39.noarch 121/153
Verifying : pkgconf-pkg-config-1.9.5-2.fc39.x86_64 122/153
Verifying : popt-1.19-3.fc39.x86_64 123/153
Verifying : publicsuffix-list-dafsa-20230614-2.fc39.noarch 124/153
Verifying : python-srpm-macros-3.12-2.fc39.noarch 125/153
Verifying : qt5-srpm-macros-5.15.10-2.fc39.noarch 126/153
Verifying : qt6-srpm-macros-6.5.2-2.fc39.noarch 127/153
Verifying : readline-8.2-4.fc39.x86_64 128/153
Verifying : redhat-rpm-config-262-1.fc39.noarch 129/153
Verifying : rpm-4.18.92-1.fc39.x86_64 130/153
Verifying : rpm-build-4.18.92-1.fc39.x86_64 131/153
Verifying : rpm-build-libs-4.18.92-1.fc39.x86_64 132/153
Verifying : rpm-libs-4.18.92-1.fc39.x86_64 133/153
Verifying : rpm-sequoia-1.4.1-2.fc39.x86_64 134/153
Verifying : rpmautospec-rpm-macros-0.3.5-4.fc39.noarch 135/153
Verifying : rust-srpm-macros-24-3.fc39.noarch 136/153
Verifying : sed-4.8-14.fc39.x86_64 137/153
Verifying : setup-2.14.4-1.fc39.noarch 138/153
Verifying : shadow-utils-2:4.13-8.fc39.x86_64 139/153
Verifying : sqlite-libs-3.42.0-7.fc39.x86_64 140/153
Verifying : systemd-libs-254.1-2.fc40.x86_64 141/153
Verifying : tar-2:1.35-1.fc39.x86_64 142/153
Verifying : tzdata-2023c-2.fc39.noarch 143/153
Verifying : unzip-6.0-62.fc39.x86_64 144/153
Verifying : util-linux-2.39.1-3.fc39.x86_64 145/153
Verifying : util-linux-core-2.39.1-3.fc39.x86_64 146/153
Verifying : which-2.21-40.fc39.x86_64 147/153
Verifying : xxhash-libs-0.8.2-1.fc39.x86_64 148/153
Verifying : xz-5.4.4-1.fc39.x86_64 149/153
Verifying : xz-libs-5.4.4-1.fc39.x86_64 150/153
Verifying : zip-3.0-38.fc39.x86_64 151/153
Verifying : zlib-1.2.13-4.fc39.x86_64 152/153
Verifying : zstd-1.5.5-4.fc39.x86_64 153/153
Installed:
alternatives-1.25-1.fc39.x86_64
ansible-srpm-macros-1-11.fc39.noarch
audit-libs-3.1.2-1.fc39.x86_64
authselect-1.4.2-3.fc39.x86_64
authselect-libs-1.4.2-3.fc39.x86_64
basesystem-11-18.fc39.noarch
bash-5.2.15-5.fc39.x86_64
binutils-2.40-13.fc39.x86_64
binutils-gold-2.40-13.fc39.x86_64
bzip2-1.0.8-16.fc39.x86_64
bzip2-libs-1.0.8-16.fc39.x86_64
ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch
coreutils-9.3-2.fc39.x86_64
coreutils-common-9.3-2.fc39.x86_64
cpio-2.14-4.fc39.x86_64
cracklib-2.9.11-2.fc39.x86_64
crypto-policies-20230731-1.git5ed06e0.fc39.noarch
curl-8.2.1-2.fc40.x86_64
cyrus-sasl-lib-2.1.28-11.fc39.x86_64
debugedit-5.0-10.fc39.x86_64
diffutils-3.10-3.fc39.x86_64
dwz-0.15-3.fc39.x86_64
ed-1.19-4.fc39.x86_64
efi-srpm-macros-5-9.fc39.noarch
elfutils-0.189-4.fc39.x86_64
elfutils-debuginfod-client-0.189-4.fc39.x86_64
elfutils-default-yama-scope-0.189-4.fc39.noarch
elfutils-libelf-0.189-4.fc39.x86_64
elfutils-libs-0.189-4.fc39.x86_64
fedora-gpg-keys-40-0.1.noarch
fedora-release-40-0.2.noarch
fedora-release-common-40-0.2.noarch
fedora-release-identity-basic-40-0.2.noarch
fedora-repos-40-0.1.noarch
fedora-repos-rawhide-40-0.1.noarch
file-5.44-5.fc39.x86_64
file-libs-5.44-5.fc39.x86_64
filesystem-3.18-6.fc39.x86_64
findutils-1:4.9.0-5.fc39.x86_64
fonts-srpm-macros-1:2.0.5-12.fc39.noarch
fpc-srpm-macros-1.3-8.fc39.noarch
gawk-5.2.2-2.fc39.x86_64
gdb-minimal-13.2-7.fc39.x86_64
gdbm-libs-1:1.23-4.fc39.x86_64
ghc-srpm-macros-1.6.1-2.fc39.noarch
glibc-2.38-1.fc39.x86_64
glibc-common-2.38-1.fc39.x86_64
glibc-gconv-extra-2.38-1.fc39.x86_64
glibc-minimal-langpack-2.38-1.fc39.x86_64
gmp-1:6.2.1-5.fc39.x86_64
gnat-srpm-macros-6-3.fc39.noarch
go-srpm-macros-3.2.0-6.fc39.noarch
grep-3.11-5.fc40.x86_64
gzip-1.12-6.fc39.x86_64
info-7.0.3-3.fc39.x86_64
jansson-2.13.1-7.fc39.x86_64
kernel-srpm-macros-1.0-20.fc39.noarch
keyutils-libs-1.6.1-7.fc39.x86_64
krb5-libs-1.21-3.fc39.x86_64
libacl-2.3.1-8.fc39.x86_64
libarchive-3.7.1-1.fc39.x86_64
libattr-2.5.1-8.fc39.x86_64
libblkid-2.39.1-3.fc39.x86_64
libbrotli-1.0.9-13.fc39.x86_64
libcap-2.48-7.fc39.x86_64
libcap-ng-0.8.3-7.fc39.x86_64
libcom_err-1.47.0-2.fc39.x86_64
libcurl-8.2.1-2.fc40.x86_64
libdb-5.3.28-56.fc39.x86_64
libeconf-0.4.0-6.fc39.x86_64
libevent-2.1.12-9.fc39.x86_64
libfdisk-2.39.1-3.fc39.x86_64
libffi-3.4.4-4.fc39.x86_64
libgcc-13.2.1-1.fc39.x86_64
libgomp-13.2.1-1.fc39.x86_64
libidn2-2.3.4-3.fc39.x86_64
libmount-2.39.1-3.fc39.x86_64
libnghttp2-1.55.1-2.fc39.x86_64
libnsl2-2.0.0-6.fc39.x86_64
libpkgconf-1.9.5-2.fc39.x86_64
libpsl-0.21.2-4.fc39.x86_64
libpwquality-1.4.5-6.fc39.x86_64
libselinux-3.5-5.fc40.x86_64
libsemanage-3.5-4.fc39.x86_64
libsepol-3.5-2.fc39.x86_64
libsigsegv-2.14-5.fc39.x86_64
libsmartcols-2.39.1-3.fc39.x86_64
libssh-0.10.5-2.fc39.x86_64
libssh-config-0.10.5-2.fc39.noarch
libstdc++-13.2.1-1.fc39.x86_64
libtasn1-4.19.0-3.fc39.x86_64
libtirpc-1.3.3-1.rc2.fc39.x86_64
libunistring-1.1-4.fc39.x86_64
libutempter-1.2.1-10.fc39.x86_64
libuuid-2.39.1-3.fc39.x86_64
libverto-0.3.2-6.fc39.x86_64
libxcrypt-4.4.36-2.fc39.x86_64
libxml2-2.10.4-3.fc39.x86_64
libzstd-1.5.5-4.fc39.x86_64
lua-libs-5.4.6-3.fc39.x86_64
lua-srpm-macros-1-9.fc39.noarch
lz4-libs-1.9.4-4.fc39.x86_64
mpfr-4.2.0-3.fc39.x86_64
ncurses-base-6.4-6.20230520.fc39.noarch
ncurses-libs-6.4-6.20230520.fc39.x86_64
ocaml-srpm-macros-8-2.fc39.noarch
openblas-srpm-macros-2-14.fc39.noarch
openldap-2.6.6-1.fc39.x86_64
openssl-libs-1:3.1.1-1.fc39.x86_64
p11-kit-0.25.0-2.fc39.x86_64
p11-kit-trust-0.25.0-2.fc39.x86_64
package-notes-srpm-macros-0.5-9.fc39.noarch
pam-1.5.3-2.fc39.x86_64
pam-libs-1.5.3-2.fc39.x86_64
patch-2.7.6-22.fc39.x86_64
pcre2-10.42-1.fc39.2.x86_64
pcre2-syntax-10.42-1.fc39.2.noarch
perl-srpm-macros-1-51.fc39.noarch
pkgconf-1.9.5-2.fc39.x86_64
pkgconf-m4-1.9.5-2.fc39.noarch
pkgconf-pkg-config-1.9.5-2.fc39.x86_64
popt-1.19-3.fc39.x86_64
publicsuffix-list-dafsa-20230614-2.fc39.noarch
pyproject-srpm-macros-1.9.0-2.fc40.noarch
python-srpm-macros-3.12-2.fc39.noarch
qt5-srpm-macros-5.15.10-2.fc39.noarch
qt6-srpm-macros-6.5.2-2.fc39.noarch
readline-8.2-4.fc39.x86_64
redhat-rpm-config-262-1.fc39.noarch
rpm-4.18.92-1.fc39.x86_64
rpm-build-4.18.92-1.fc39.x86_64
rpm-build-libs-4.18.92-1.fc39.x86_64
rpm-libs-4.18.92-1.fc39.x86_64
rpm-sequoia-1.4.1-2.fc39.x86_64
rpmautospec-rpm-macros-0.3.5-4.fc39.noarch
rust-srpm-macros-24-3.fc39.noarch
sed-4.8-14.fc39.x86_64
setup-2.14.4-1.fc39.noarch
shadow-utils-2:4.13-8.fc39.x86_64
sqlite-libs-3.42.0-7.fc39.x86_64
systemd-libs-254.1-2.fc40.x86_64
tar-2:1.35-1.fc39.x86_64
tzdata-2023c-2.fc39.noarch
unzip-6.0-62.fc39.x86_64
util-linux-2.39.1-3.fc39.x86_64
util-linux-core-2.39.1-3.fc39.x86_64
which-2.21-40.fc39.x86_64
xxhash-libs-0.8.2-1.fc39.x86_64
xz-5.4.4-1.fc39.x86_64
xz-libs-5.4.4-1.fc39.x86_64
zip-3.0-38.fc39.x86_64
zlib-1.2.13-4.fc39.x86_64
zstd-1.5.5-4.fc39.x86_64
Complete!
Finish: installing minimal buildroot with dnf
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: libfdisk-2.39.1-3.fc39.x86_64
libacl-2.3.1-8.fc39.x86_64
file-libs-5.44-5.fc39.x86_64
libnghttp2-1.55.1-2.fc39.x86_64
openldap-2.6.6-1.fc39.x86_64
info-7.0.3-3.fc39.x86_64
zlib-1.2.13-4.fc39.x86_64
libstdc++-13.2.1-1.fc39.x86_64
sed-4.8-14.fc39.x86_64
fonts-srpm-macros-2.0.5-12.fc39.noarch
which-2.21-40.fc39.x86_64
rpm-libs-4.18.92-1.fc39.x86_64
rpm-sequoia-1.4.1-2.fc39.x86_64
ocaml-srpm-macros-8-2.fc39.noarch
pcre2-10.42-1.fc39.2.x86_64
ncurses-base-6.4-6.20230520.fc39.noarch
libsemanage-3.5-4.fc39.x86_64
ed-1.19-4.fc39.x86_64
libgomp-13.2.1-1.fc39.x86_64
gpg-pubkey-a15b79cc-63d04c2c
libdb-5.3.28-56.fc39.x86_64
libxml2-2.10.4-3.fc39.x86_64
fedora-release-common-40-0.2.noarch
elfutils-libelf-0.189-4.fc39.x86_64
basesystem-11-18.fc39.noarch
perl-srpm-macros-1-51.fc39.noarch
openblas-srpm-macros-2-14.fc39.noarch
bzip2-libs-1.0.8-16.fc39.x86_64
gawk-5.2.2-2.fc39.x86_64
libcom_err-1.47.0-2.fc39.x86_64
libcap-2.48-7.fc39.x86_64
popt-1.19-3.fc39.x86_64
bzip2-1.0.8-16.fc39.x86_64
p11-kit-0.25.0-2.fc39.x86_64
libffi-3.4.4-4.fc39.x86_64
systemd-libs-254.1-2.fc40.x86_64
ghc-srpm-macros-1.6.1-2.fc39.noarch
authselect-1.4.2-3.fc39.x86_64
fedora-repos-rawhide-40-0.1.noarch
gmp-6.2.1-5.fc39.x86_64
pam-1.5.3-2.fc39.x86_64
libssh-0.10.5-2.fc39.x86_64
libgcc-13.2.1-1.fc39.x86_64
qt6-srpm-macros-6.5.2-2.fc39.noarch
rpmautospec-rpm-macros-0.3.5-4.fc39.noarch
libxcrypt-4.4.36-2.fc39.x86_64
libuuid-2.39.1-3.fc39.x86_64
lz4-libs-1.9.4-4.fc39.x86_64
libevent-2.1.12-9.fc39.x86_64
libpsl-0.21.2-4.fc39.x86_64
shadow-utils-4.13-8.fc39.x86_64
libsepol-3.5-2.fc39.x86_64
ncurses-libs-6.4-6.20230520.fc39.x86_64
rust-srpm-macros-24-3.fc39.noarch
p11-kit-trust-0.25.0-2.fc39.x86_64
libzstd-1.5.5-4.fc39.x86_64
libmount-2.39.1-3.fc39.x86_64
filesystem-3.18-6.fc39.x86_64
krb5-libs-1.21-3.fc39.x86_64
dwz-0.15-3.fc39.x86_64
alternatives-1.25-1.fc39.x86_64
elfutils-libs-0.189-4.fc39.x86_64
libutempter-1.2.1-10.fc39.x86_64
rpm-4.18.92-1.fc39.x86_64
util-linux-core-2.39.1-3.fc39.x86_64
file-5.44-5.fc39.x86_64
coreutils-common-9.3-2.fc39.x86_64
binutils-gold-2.40-13.fc39.x86_64
kernel-srpm-macros-1.0-20.fc39.noarch
gnat-srpm-macros-6-3.fc39.noarch
fedora-gpg-keys-40-0.1.noarch
cpio-2.14-4.fc39.x86_64
libnsl2-2.0.0-6.fc39.x86_64
fpc-srpm-macros-1.3-8.fc39.noarch
libunistring-1.1-4.fc39.x86_64
package-notes-srpm-macros-0.5-9.fc39.noarch
libbrotli-1.0.9-13.fc39.x86_64
rpm-build-4.18.92-1.fc39.x86_64
unzip-6.0-62.fc39.x86_64
xz-libs-5.4.4-1.fc39.x86_64
binutils-2.40-13.fc39.x86_64
glibc-gconv-extra-2.38-1.fc39.x86_64
libtasn1-4.19.0-3.fc39.x86_64
lua-libs-5.4.6-3.fc39.x86_64
util-linux-2.39.1-3.fc39.x86_64
gzip-1.12-6.fc39.x86_64
sqlite-libs-3.42.0-7.fc39.x86_64
libssh-config-0.10.5-2.fc39.noarch
gdbm-libs-1.23-4.fc39.x86_64
lua-srpm-macros-1-9.fc39.noarch
ca-certificates-2023.2.60_v7.0.306-2.fc39.noarch
libidn2-2.3.4-3.fc39.x86_64
go-srpm-macros-3.2.0-6.fc39.noarch
jansson-2.13.1-7.fc39.x86_64
gpg-pubkey-18b8e74c-62f2920f
zstd-1.5.5-4.fc39.x86_64
ansible-srpm-macros-1-11.fc39.noarch
fedora-release-40-0.2.noarch
coreutils-9.3-2.fc39.x86_64
publicsuffix-list-dafsa-20230614-2.fc39.noarch
xxhash-libs-0.8.2-1.fc39.x86_64
python-srpm-macros-3.12-2.fc39.noarch
fedora-release-identity-basic-40-0.2.noarch
glibc-minimal-langpack-2.38-1.fc39.x86_64
debugedit-5.0-10.fc39.x86_64
openssl-libs-3.1.1-1.fc39.x86_64
pkgconf-1.9.5-2.fc39.x86_64
glibc-common-2.38-1.fc39.x86_64
libblkid-2.39.1-3.fc39.x86_64
zip-3.0-38.fc39.x86_64
redhat-rpm-config-262-1.fc39.noarch
tzdata-2023c-2.fc39.noarch
libarchive-3.7.1-1.fc39.x86_64
glibc-2.38-1.fc39.x86_64
readline-8.2-4.fc39.x86_64
patch-2.7.6-22.fc39.x86_64
libselinux-3.5-5.fc40.x86_64
libeconf-0.4.0-6.fc39.x86_64
findutils-4.9.0-5.fc39.x86_64
grep-3.11-5.fc40.x86_64
cyrus-sasl-lib-2.1.28-11.fc39.x86_64
authselect-libs-1.4.2-3.fc39.x86_64
mpfr-4.2.0-3.fc39.x86_64
qt5-srpm-macros-5.15.10-2.fc39.noarch
gdb-minimal-13.2-7.fc39.x86_64
audit-libs-3.1.2-1.fc39.x86_64
libsigsegv-2.14-5.fc39.x86_64
cracklib-2.9.11-2.fc39.x86_64
libpwquality-1.4.5-6.fc39.x86_64
libcurl-8.2.1-2.fc40.x86_64
efi-srpm-macros-5-9.fc39.noarch
libpkgconf-1.9.5-2.fc39.x86_64
libverto-0.3.2-6.fc39.x86_64
crypto-policies-20230731-1.git5ed06e0.fc39.noarch
fedora-repos-40-0.1.noarch
pkgconf-m4-1.9.5-2.fc39.noarch
libtirpc-1.3.3-1.rc2.fc39.x86_64
libattr-2.5.1-8.fc39.x86_64
pam-libs-1.5.3-2.fc39.x86_64
elfutils-0.189-4.fc39.x86_64
elfutils-debuginfod-client-0.189-4.fc39.x86_64
xz-5.4.4-1.fc39.x86_64
pkgconf-pkg-config-1.9.5-2.fc39.x86_64
pcre2-syntax-10.42-1.fc39.2.noarch
rpm-build-libs-4.18.92-1.fc39.x86_64
tar-1.35-1.fc39.x86_64
diffutils-3.10-3.fc39.x86_64
libsmartcols-2.39.1-3.fc39.x86_64
libcap-ng-0.8.3-7.fc39.x86_64
pyproject-srpm-macros-1.9.0-2.fc40.noarch
setup-2.14.4-1.fc39.noarch
bash-5.2.15-5.fc39.x86_64
curl-8.2.1-2.fc40.x86_64
keyutils-libs-1.6.1-7.fc39.x86_64
elfutils-default-yama-scope-0.189-4.fc39.noarch
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1691625600
Wrote: /builddir/build/SRPMS/snakemake-7.32.3-1.fc40.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1692102139.323735/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-x86_64-1692102139.323735/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-x86_64-1692102139.323735/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-600herom/snakemake/snakemake.spec) Config(child) 0 minutes 49 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/snakemake-7.32.3-1.fc40.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1692102139.323735 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.0 starting (python version = 3.11.3, NVR = mock-5.0-1.fc38)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/results/snakemake-7.32.3-1.fc40.src.rpm) Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.0
INFO: Mock Version: 5.0
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1692102139.323735/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1692102139.323735/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Package manager dnf detected and used (fallback)
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1692102139.323735/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf detected and used (direct choice)
Start: dnf update
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 20 kB/s | 1.5 kB 00:00
Copr repository 10 MB/s | 3.8 MB 00:00
fedora 718 kB/s | 22 kB 00:00
fedora 2.6 MB/s | 1.7 MB 00:00
Dependencies resolved.
Nothing to do.
Complete!
Finish: dnf update
Finish: chroot init
Start: build phase for snakemake-7.32.3-1.fc40.src.rpm
Start: build setup for snakemake-7.32.3-1.fc40.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1691625600
Wrote: /builddir/build/SRPMS/snakemake-7.32.3-1.fc40.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 38 kB/s | 1.5 kB 00:00
fedora 540 kB/s | 22 kB 00:00
fedora 63 kB/s | 1.7 MB 00:28
Dependencies resolved.
====================================================================================================
Package Arch Version Repo Size
====================================================================================================
Installing:
help2man noarch 1.49.3-3.fc39 fedora 228 k
latexmk noarch 4.80-2.fc39 fedora 414 k
librsvg2-tools x86_64 2.56.90-9.fc39 fedora 1.7 M
make x86_64 1:4.4.1-2.fc39 fedora 589 k
python3-boto3 noarch 1.28.25-1.fc40 fedora 210 k
python3-configargparse noarch 1.5.5-2.fc39 fedora 52 k
python3-devel x86_64 3.12.0~rc1-1.fc40 copr_base 273 k
python3-pandas x86_64 1.5.3-7.fc39~bootstrap fedora 7.3 M
python3-pytest noarch 7.3.2-4.fc40 copr_base 1.7 M
python3-requests-mock noarch 1.10.0-5.fc40 copr_base 53 k
python3-sphinx-latex noarch 1:7.0.1-1.fc40 copr_base 11 k
texlive-xetex x86_64 11:svn66203-77.fc39 fedora 1.3 M
texlive-xindy x86_64 11:svn65958-77.fc39 fedora 1.7 M
vim-filesystem noarch 2:9.0.1677-3.fc39 fedora 18 k
Installing dependencies:
abattis-cantarell-vf-fonts noarch 0.301-10.fc39 fedora 121 k
adobe-mappings-cmap noarch 20230622-1.fc39 fedora 2.1 M
adobe-mappings-cmap-deprecated noarch 20230622-1.fc39 fedora 113 k
adobe-mappings-pdf noarch 20190401-5.fc39 fedora 698 k
at-spi2-core x86_64 2.49.90-1.fc39 fedora 371 k
atk x86_64 2.49.90-1.fc39 fedora 81 k
avahi-libs x86_64 0.8-24.fc39 fedora 67 k
biber noarch 2.19-3.fc39 fedora 292 k
cairo x86_64 1.17.8-5.fc39 fedora 705 k
cairo-gobject x86_64 1.17.8-5.fc39 fedora 18 k
clisp x86_64 2.49.93-33.20230718git6692497.fc39 fedora 6.1 M
cups-libs x86_64 1:2.4.6-4.fc40 fedora 268 k
dbus x86_64 1:1.14.8-2.fc39 fedora 8.2 k
dbus-broker x86_64 33-2.fc39 fedora 173 k
dbus-common noarch 1:1.14.8-2.fc39 fedora 15 k
dbus-libs x86_64 1:1.14.8-2.fc39 fedora 156 k
default-fonts-core-sans noarch 4.0-8.fc40 fedora 32 k
desktop-file-utils x86_64 0.26-9.fc39 fedora 72 k
emacs-filesystem noarch 1:29.1-1.fc39 fedora 8.4 k
expat x86_64 2.5.0-3.fc39 fedora 110 k
fcgi x86_64 2.4.0-47.fc39 fedora 46 k
ffcall x86_64 2.4-6.fc39 fedora 36 k
flexiblas x86_64 3.3.1-5.fc39 fedora 33 k
flexiblas-netlib x86_64 3.3.1-5.fc39 fedora 3.1 M
flexiblas-openblas-openmp x86_64 3.3.1-5.fc39 fedora 17 k
fontconfig x86_64 2.14.2-4.fc39 fedora 296 k
fonts-filesystem noarch 1:2.0.5-12.fc39 fedora 8.2 k
freetype x86_64 2.13.1-2.fc39 fedora 414 k
fribidi x86_64 1.0.13-2.fc39 fedora 91 k
gc x86_64 8.2.2-4.fc39 fedora 110 k
gd x86_64 2.3.3-12.fc39 fedora 139 k
gdk-pixbuf2 x86_64 2.42.10-5.fc39 fedora 484 k
gdk-pixbuf2-modules x86_64 2.42.10-5.fc39 fedora 85 k
ghostscript x86_64 10.01.2-3.fc39 fedora 37 k
ghostscript-tools-fonts x86_64 10.01.2-3.fc39 fedora 12 k
ghostscript-tools-printing x86_64 10.01.2-3.fc39 fedora 13 k
giflib x86_64 5.2.1-16.fc39 fedora 51 k
glib2 x86_64 2.77.2-1.fc40 fedora 2.8 M
gnutls x86_64 3.8.0-7.fc39 fedora 1.1 M
google-droid-sans-fonts noarch 20200215-15.fc39 fedora 2.7 M
google-noto-fonts-common noarch 20230801-2.fc40 fedora 17 k
google-noto-sans-vf-fonts noarch 20230801-2.fc40 fedora 583 k
graphite2 x86_64 1.3.14-12.fc39 fedora 95 k
groff-base x86_64 1.23.0-2.fc39 fedora 1.1 M
gtk-update-icon-cache x86_64 3.24.38-3.fc39 fedora 34 k
gtk2 x86_64 2.24.33-15.fc39 fedora 3.3 M
guile22 x86_64 2.2.7-9.fc39 fedora 6.5 M
gumbo-parser x86_64 1:0.10.1-29.fc39 fedora 136 k
harfbuzz x86_64 8.1.1-1.fc39 fedora 949 k
hicolor-icon-theme noarch 0.17-16.fc39 fedora 66 k
highway x86_64 1.0.5-1.fc39 fedora 478 k
hwdata noarch 0.373-1.fc39 fedora 1.6 M
jbig2dec-libs x86_64 0.19-10.fc39 fedora 73 k
jbigkit-libs x86_64 2.1-26.fc39 fedora 53 k
lcms2 x86_64 2.15-2.fc39 fedora 177 k
leptonica x86_64 1.83.1-2.fc39 fedora 1.1 M
libICE x86_64 1.0.10-11.fc39 fedora 70 k
libSM x86_64 1.2.3-13.fc39 fedora 41 k
libX11 x86_64 1.8.6-2.fc39 fedora 649 k
libX11-common noarch 1.8.6-2.fc39 fedora 175 k
libX11-xcb x86_64 1.8.6-2.fc39 fedora 12 k
libXau x86_64 1.0.11-3.fc39 fedora 31 k
libXaw x86_64 1.0.14-5.fc39 fedora 202 k
libXcomposite x86_64 0.4.5-10.fc39 fedora 23 k
libXcursor x86_64 1.2.1-4.fc39 fedora 30 k
libXdamage x86_64 1.1.5-10.fc39 fedora 22 k
libXext x86_64 1.3.5-3.fc39 fedora 39 k
libXfixes x86_64 6.0.0-6.fc39 fedora 19 k
libXft x86_64 2.3.8-3.fc39 fedora 72 k
libXi x86_64 1.8.1-2.fc39 fedora 40 k
libXinerama x86_64 1.1.5-3.fc39 fedora 14 k
libXmu x86_64 1.1.4-3.fc39 fedora 76 k
libXpm x86_64 3.5.15-4.fc39 fedora 63 k
libXrandr x86_64 1.5.2-11.fc39 fedora 27 k
libXrender x86_64 0.9.11-3.fc39 fedora 27 k
libXt x86_64 1.2.1-5.fc39 fedora 178 k
libXtst x86_64 1.2.4-3.fc39 fedora 20 k
libXxf86vm x86_64 1.1.5-3.fc39 fedora 18 k
libaom x86_64 3.6.1-2.fc39 fedora 1.8 M
libavif x86_64 0.11.1-11.fc39 fedora 84 k
libb2 x86_64 0.98.1-9.fc39 fedora 25 k
libdatrie x86_64 0.2.13-7.fc39 fedora 32 k
libdav1d x86_64 1.2.1-2.fc39 fedora 618 k
libdrm x86_64 2.4.114-3.fc39 fedora 157 k
libgfortran x86_64 13.2.1-1.fc39 fedora 903 k
libglade2 x86_64 2.6.4-30.fc39 fedora 61 k
libglvnd x86_64 1:1.6.0-3.fc39 fedora 133 k
libglvnd-glx x86_64 1:1.6.0-3.fc39 fedora 142 k
libgs x86_64 10.01.2-3.fc39 fedora 3.5 M
libicu x86_64 73.2-2.fc39 fedora 11 M
libijs x86_64 0.35-19.fc39 fedora 29 k
libimagequant x86_64 4.0.1-5.fc39 fedora 308 k
libjpeg-turbo x86_64 2.1.4-3.fc39 fedora 183 k
libjxl x86_64 1:0.8.2-3.fc40 fedora 1.2 M
libpaper x86_64 1:2.1.1-1.fc39 fedora 27 k
libpciaccess x86_64 0.16-9.fc39 fedora 26 k
libpng x86_64 2:1.6.37-15.fc39 fedora 119 k
libpq x86_64 15.3-1.fc39 fedora 215 k
libquadmath x86_64 13.2.1-1.fc39 fedora 194 k
librsvg2 x86_64 2.56.90-9.fc39 fedora 1.6 M
libsvm x86_64 3.32-2.fc40 copr_base 331 k
libthai x86_64 0.1.29-6.fc39 fedora 213 k
libtiff x86_64 4.4.0-7.fc39 fedora 197 k
libtool-ltdl x86_64 2.4.7-7.fc39 fedora 36 k
libvmaf x86_64 2.3.0-6.fc39 fedora 180 k
libwebp x86_64 1.3.1-2.fc39 fedora 284 k
libxcb x86_64 1.13.1-12.fc39 fedora 233 k
libxshmfence x86_64 1.3-13.fc39 fedora 12 k
libxslt x86_64 1.1.38-3.fc39 fedora 187 k
mailcap noarch 2.1.54-2.fc39 fedora 34 k
mesa-libGL x86_64 23.2.0~rc2-1.fc40 fedora 175 k
mesa-libglapi x86_64 23.2.0~rc2-1.fc40 fedora 52 k
mpdecimal x86_64 2.5.1-7.fc39 fedora 89 k
mupdf x86_64 1.22.2-3.fc39 fedora 11 M
ncurses x86_64 6.4-6.20230520.fc39 fedora 416 k
nettle x86_64 3.9.1-2.fc39 fedora 425 k
openblas x86_64 0.3.21-6.fc39 fedora 35 k
openblas-openmp x86_64 0.3.21-6.fc39 fedora 4.9 M
openjpeg2 x86_64 2.5.0-4.fc39 fedora 178 k
pango x86_64 1.51.0-1.fc40 fedora 343 k
pari x86_64 2.15.4-2.fc39 fedora 3.8 M
pcre x86_64 8.45-1.fc39.4 fedora 202 k
perl-Authen-SASL noarch 2.16-30.fc39 fedora 55 k
perl-AutoLoader noarch 5.74-500.fc39 fedora 21 k
perl-B x86_64 1.88-500.fc39 fedora 177 k
perl-B-Hooks-EndOfScope noarch 0.26-7.fc39 fedora 43 k
perl-Business-ISBN noarch 3.008-2.fc39 fedora 32 k
perl-Business-ISBN-Data noarch 20230811.001-1.fc40 fedora 37 k
perl-Business-ISMN noarch 1.203-2.fc39 fedora 25 k
perl-Business-ISSN noarch 1.005-8.fc39 fedora 18 k
perl-Carp noarch 1.54-500.fc39 fedora 29 k
perl-Class-Accessor noarch 0.51-18.fc39 fedora 28 k
perl-Class-Data-Inheritable noarch 0.09-6.fc39 fedora 13 k
perl-Class-Inspector noarch 1.36-14.fc39 fedora 30 k
perl-Class-Method-Modifiers noarch 2.15-2.fc39 fedora 50 k
perl-Class-Singleton noarch 1.6-9.fc39 fedora 25 k
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texlive-fp noarch 11:svn49719-69.fc39 fedora 36 k
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texlive-framed noarch 11:svn26789.0.96-69.fc39 fedora 19 k
texlive-geometry noarch 11:svn61719-69.fc39 fedora 23 k
texlive-gettitlestring noarch 11:svn53170-69.fc39 fedora 327 k
texlive-glyphlist noarch 11:svn54074-77.fc39 fedora 38 k
texlive-gnu-freefont noarch 11:svn29349.0-69.fc39 fedora 7.4 M
texlive-graphics noarch 11:svn66204-69.fc39 fedora 40 k
texlive-graphics-cfg noarch 11:svn41448-69.fc39 fedora 13 k
texlive-graphics-def noarch 11:svn64487-69.fc39 fedora 28 k
texlive-grfext noarch 11:svn53024-69.fc39 fedora 317 k
texlive-grffile noarch 11:svn52756-69.fc39 fedora 360 k
texlive-gsftopk x86_64 11:svn52851-77.fc39 fedora 35 k
texlive-helvetic noarch 11:svn61719-69.fc39 fedora 655 k
texlive-hobsub noarch 11:svn52810-69.fc39 fedora 77 k
texlive-hologo noarch 11:svn61719-69.fc39 fedora 586 k
texlive-hopatch noarch 11:svn65491-69.fc39 fedora 328 k
texlive-hycolor noarch 11:svn53584-69.fc39 fedora 384 k
texlive-hypdoc noarch 11:svn65678-69.fc39 fedora 335 k
texlive-hyperref noarch 11:svn65758-69.fc39 fedora 119 k
texlive-hyph-utf8 noarch 11:svn61719-69.fc39 fedora 29 k
texlive-hyphen-base noarch 11:svn66413-69.fc39 fedora 34 k
texlive-hyphenex noarch 11:svn57387-69.fc39 fedora 19 k
texlive-ifmtarg noarch 11:svn47544-69.fc39 fedora 15 k
texlive-ifplatform noarch 11:svn45533-69.fc39 fedora 16 k
texlive-iftex noarch 11:svn61910-69.fc39 fedora 21 k
texlive-index noarch 11:svn24099.4.1beta-69.fc39 fedora 23 k
texlive-infwarerr noarch 11:svn53023-69.fc39 fedora 295 k
texlive-intcalc noarch 11:svn53168-69.fc39 fedora 432 k
texlive-kastrup noarch 11:svn15878.0-69.fc39 fedora 13 k
texlive-knuth-lib noarch 11:svn57963-69.fc39 fedora 52 k
texlive-knuth-local noarch 11:svn57963-69.fc39 fedora 45 k
texlive-koma-script noarch 11:svn64685-69.fc39 fedora 6.4 M
texlive-kpathsea x86_64 11:svn66209-77.fc39 fedora 1.1 M
texlive-kvdefinekeys noarch 11:svn53193-69.fc39 fedora 306 k
texlive-kvoptions noarch 11:svn63622-69.fc39 fedora 494 k
texlive-kvsetkeys noarch 11:svn64632-69.fc39 fedora 398 k
texlive-l3backend noarch 11:svn65573-69.fc39 fedora 897 k
texlive-l3kernel noarch 11:svn66094-69.fc39 fedora 202 k
texlive-l3packages noarch 11:svn65722-69.fc39 fedora 41 k
texlive-latex noarch 11:svn65161-77.fc39 fedora 30 M
texlive-latex-fonts noarch 11:svn28888.0-69.fc39 fedora 50 k
texlive-latex-lab noarch 11:svn64892-69.fc39 fedora 1.8 M
texlive-latexconfig noarch 11:svn53525-69.fc39 fedora 15 k
texlive-letltxmacro noarch 11:svn53022-69.fc39 fedora 300 k
texlive-lib x86_64 11:20230311-77.fc39 fedora 492 k
texlive-listings noarch 11:svn66222-69.fc39 fedora 167 k
texlive-lm noarch 11:svn65956-69.fc39 fedora 12 M
texlive-lm-math noarch 11:svn36915.1.959-69.fc39 fedora 447 k
texlive-logreq noarch 11:svn53003-69.fc39 fedora 20 k
texlive-ltxcmds noarch 11:svn56421-69.fc39 fedora 400 k
texlive-ltxmisc noarch 11:svn21927.0-69.fc39 fedora 28 k
texlive-lua-alt-getopt noarch 11:svn56414-69.fc39 fedora 13 k
texlive-lua-uni-algos noarch 11:svn62204-69.fc39 fedora 97 k
texlive-luabidi noarch 11:svn54512-69.fc39 fedora 20 k
texlive-luahbtex x86_64 11:svn66186-77.fc39 fedora 2.0 M
texlive-lualatex-math noarch 11:svn61464-69.fc39 fedora 20 k
texlive-lualibs noarch 11:svn64615-69.fc39 fedora 160 k
texlive-luaotfload noarch 11:svn64616-77.fc39 fedora 1.2 M
texlive-luatex x86_64 11:svn66967-77.fc39 fedora 3.9 M
texlive-luatex85 noarch 11:svn41456-69.fc39 fedora 19 k
texlive-luatexbase noarch 11:svn52663-69.fc39 fedora 16 k
texlive-makecmds noarch 11:svn15878.0-69.fc39 fedora 15 k
texlive-makeindex x86_64 11:svn62517-77.fc39 fedora 436 k
texlive-manfnt-font noarch 11:svn45777-69.fc39 fedora 37 k
texlive-marginnote noarch 11:svn48383-69.fc39 fedora 17 k
texlive-marvosym noarch 11:svn29349.2.2a-69.fc39 fedora 146 k
texlive-mathpazo noarch 11:svn52663-69.fc39 fedora 90 k
texlive-memoir noarch 11:svn65040-69.fc39 fedora 94 k
texlive-metafont x86_64 11:svn66186-77.fc39 fedora 268 k
texlive-mflogo noarch 11:svn42428-69.fc39 fedora 16 k
texlive-mflogo-font noarch 11:svn54512-69.fc39 fedora 32 k
texlive-mfnfss noarch 11:svn46036-69.fc39 fedora 17 k
texlive-mfware x86_64 11:svn66186-77.fc39 fedora 101 k
texlive-minitoc noarch 11:svn61719-69.fc39 fedora 122 k
texlive-modes noarch 11:svn61719-69.fc39 fedora 306 k
texlive-mparhack noarch 11:svn59066-69.fc39 fedora 18 k
texlive-mptopdf noarch 11:svn65952-77.fc39 fedora 52 k
texlive-ms noarch 11:svn57473-69.fc39 fedora 17 k
texlive-multido noarch 11:svn18302.1.42-69.fc39 fedora 18 k
texlive-natbib noarch 11:svn20668.8.31b-69.fc39 fedora 31 k
texlive-ncntrsbk noarch 11:svn61719-69.fc39 fedora 363 k
texlive-needspace noarch 11:svn29601.1.3d-69.fc39 fedora 15 k
texlive-notoccite noarch 11:svn18129.0-69.fc39 fedora 13 k
texlive-oberdiek noarch 11:svn65521-77.fc39 fedora 7.7 M
texlive-pagesel noarch 11:svn56105-69.fc39 fedora 340 k
texlive-palatino noarch 11:svn61719-69.fc39 fedora 423 k
texlive-paralist noarch 11:svn43021-69.fc39 fedora 18 k
texlive-parallel noarch 11:svn15878.0-69.fc39 fedora 18 k
texlive-parskip noarch 11:svn58358-69.fc39 fedora 17 k
texlive-pdfcol noarch 11:svn64469-69.fc39 fedora 327 k
texlive-pdfcolmk noarch 11:svn52912-69.fc39 fedora 18 k
texlive-pdfescape noarch 11:svn53082-69.fc39 fedora 353 k
texlive-pdftex x86_64 11:svn66243-77.fc39 fedora 2.5 M
texlive-pdftexcmds noarch 11:svn55777-69.fc39 fedora 391 k
texlive-pgf noarch 11:svn65553-69.fc39 fedora 897 k
texlive-picture noarch 11:svn54867-69.fc39 fedora 312 k
texlive-placeins noarch 11:svn19848.2.2-69.fc39 fedora 13 k
texlive-plain noarch 11:svn57963-69.fc39 fedora 48 k
texlive-polyglossia noarch 11:svn65792-69.fc39 fedora 220 k
texlive-pslatex noarch 11:svn57434-69.fc39 fedora 22 k
texlive-psnfss noarch 11:svn54694-69.fc39 fedora 60 k
texlive-pspicture noarch 11:svn15878.0-69.fc39 fedora 16 k
texlive-pst-3d noarch 11:svn17257.1.10-69.fc39 fedora 18 k
texlive-pst-coil noarch 11:svn62977-69.fc39 fedora 18 k
texlive-pst-eps noarch 11:svn15878.1.0-69.fc39 fedora 17 k
texlive-pst-fill noarch 11:svn60671-69.fc39 fedora 18 k
texlive-pst-grad noarch 11:svn15878.1.06-69.fc39 fedora 18 k
texlive-pst-math noarch 11:svn64732-69.fc39 fedora 20 k
texlive-pst-node noarch 11:svn61838-69.fc39 fedora 40 k
texlive-pst-ovl noarch 11:svn54963-69.fc39 fedora 16 k
texlive-pst-plot noarch 11:svn65346-69.fc39 fedora 37 k
texlive-pst-text noarch 11:svn49542-69.fc39 fedora 19 k
texlive-pst-tools noarch 11:svn60621-69.fc39 fedora 21 k
texlive-pst-tree noarch 11:svn60421-69.fc39 fedora 21 k
texlive-pstricks noarch 11:svn65346-69.fc39 fedora 117 k
texlive-pstricks-add noarch 11:svn65067-69.fc39 fedora 37 k
texlive-pxfonts noarch 11:svn15878.0-69.fc39 fedora 523 k
texlive-ragged2e noarch 11:svn66152-69.fc39 fedora 682 k
texlive-refcount noarch 11:svn53164-69.fc39 fedora 335 k
texlive-rerunfilecheck noarch 11:svn63869-69.fc39 fedora 341 k
texlive-rsfs noarch 11:svn15878.0-69.fc39 fedora 73 k
texlive-sauerj noarch 11:svn15878.0-69.fc39 fedora 20 k
texlive-setspace noarch 11:svn65206-69.fc39 fedora 18 k
texlive-showexpl noarch 11:svn57414-69.fc39 fedora 18 k
texlive-stringenc noarch 11:svn52982-69.fc39 fedora 702 k
texlive-subfig noarch 11:svn15878.1.3-69.fc39 fedora 21 k
texlive-symbol noarch 11:svn61719-69.fc39 fedora 54 k
texlive-tabulary noarch 11:svn34368.0.10-69.fc39 fedora 18 k
texlive-tex x86_64 11:svn66186-77.fc39 fedora 212 k
texlive-tex-gyre noarch 11:svn65956-69.fc39 fedora 8.0 M
texlive-tex-gyre-math noarch 11:svn41264-69.fc39 fedora 1.4 M
texlive-tex-ini-files noarch 11:svn40533-69.fc39 fedora 15 k
texlive-texlive-common-doc noarch 11:svn54176-69.fc39 fedora 158 k
texlive-texlive-en noarch 11:svn66572-77.fc39 fedora 2.0 M
texlive-texlive-msg-translations noarch 11:svn66593-69.fc39 fedora 165 k
texlive-texlive-scripts noarch 11:svn66584-77.fc39 fedora 122 k
texlive-texlive.infra noarch 11:svn66512-77.fc39 fedora 295 k
texlive-times noarch 11:svn61719-69.fc39 fedora 368 k
texlive-tipa noarch 11:svn29349.1.3-69.fc39 fedora 2.8 M
texlive-titlesec noarch 11:svn59845-69.fc39 fedora 34 k
texlive-tools noarch 11:svn64892-69.fc39 fedora 75 k
texlive-txfonts noarch 11:svn15878.0-69.fc39 fedora 816 k
texlive-ucharcat noarch 11:svn38907-69.fc39 fedora 15 k
texlive-ucs noarch 11:svn64114-69.fc39 fedora 423 k
texlive-underscore noarch 11:svn18261.0-69.fc39 fedora 19 k
texlive-unicode-data noarch 11:svn64423-69.fc39 fedora 371 k
texlive-unicode-math noarch 11:svn61719-69.fc39 fedora 63 k
texlive-uniquecounter noarch 11:svn53162-69.fc39 fedora 300 k
texlive-upquote noarch 11:svn26059.v1.3-69.fc39 fedora 17 k
texlive-url noarch 11:svn32528.3.4-69.fc39 fedora 20 k
texlive-utopia noarch 11:svn15878.0-69.fc39 fedora 239 k
texlive-varwidth noarch 11:svn24104.0.92-69.fc39 fedora 18 k
texlive-wasy noarch 11:svn53533-69.fc39 fedora 44 k
texlive-wasy-type1 noarch 11:svn53534-69.fc39 fedora 272 k
texlive-wasysym noarch 11:svn54080-69.fc39 fedora 18 k
texlive-wrapfig noarch 11:svn61719-69.fc39 fedora 23 k
texlive-xcolor noarch 11:svn63563-69.fc39 fedora 32 k
texlive-xdvi x86_64 11:svn62387-77.fc39 fedora 351 k
texlive-xetexconfig noarch 11:svn45845-69.fc39 fedora 11 k
texlive-xifthen noarch 11:svn38929-69.fc39 fedora 16 k
texlive-xkeyval noarch 11:svn63616-69.fc39 fedora 27 k
texlive-xpatch noarch 11:svn54563-69.fc39 fedora 19 k
texlive-xstring noarch 11:svn65551-69.fc39 fedora 25 k
texlive-xunicode noarch 11:svn30466.0.981-69.fc39 fedora 44 k
texlive-zapfchan noarch 11:svn61719-69.fc39 fedora 109 k
texlive-zapfding noarch 11:svn61719-69.fc39 fedora 64 k
texlive-zref noarch 11:svn62977-69.fc39 fedora 688 k
urw-base35-bookman-fonts noarch 20200910-18.fc39 fedora 847 k
urw-base35-c059-fonts noarch 20200910-18.fc39 fedora 874 k
urw-base35-d050000l-fonts noarch 20200910-18.fc39 fedora 76 k
urw-base35-fonts noarch 20200910-18.fc39 fedora 10 k
urw-base35-fonts-common noarch 20200910-18.fc39 fedora 21 k
urw-base35-gothic-fonts noarch 20200910-18.fc39 fedora 643 k
urw-base35-nimbus-mono-ps-fonts noarch 20200910-18.fc39 fedora 795 k
urw-base35-nimbus-roman-fonts noarch 20200910-18.fc39 fedora 856 k
urw-base35-nimbus-sans-fonts noarch 20200910-18.fc39 fedora 1.3 M
urw-base35-p052-fonts noarch 20200910-18.fc39 fedora 974 k
urw-base35-standard-symbols-ps-fonts noarch 20200910-18.fc39 fedora 42 k
urw-base35-z003-fonts noarch 20200910-18.fc39 fedora 276 k
xdg-utils noarch 1.1.3-14.fc39 fedora 77 k
xml-common noarch 0.6.3-61.fc39 fedora 31 k
xpdf-libs x86_64 1:4.04-10.fc39 fedora 647 k
xprop x86_64 1.2.5-4.fc39 fedora 35 k
zziplib x86_64 0.13.72-5.fc39 fedora 86 k
Transaction Summary
====================================================================================================
Install 675 Packages
Total size: 376 M
Total download size: 286 M
Installed size: 1.1 G
Downloading Packages:
[SKIPPED] pyproject-rpm-macros-1.9.0-2.fc40.noarch.rpm: Already downloaded
[SKIPPED] python-pip-wheel-23.2.1-1.fc40.noarch.rpm: Already downloaded
[SKIPPED] python3-3.12.0~rc1-1.fc40.x86_64.rpm: Already downloaded
[SKIPPED] python3-charset-normalizer-3.2.0-2.fc40.noarch.rpm: Already downloaded
[SKIPPED] python3-devel-3.12.0~rc1-1.fc40.x86_64.rpm: Already downloaded
[SKIPPED] python3-docutils-0.20.1-1.fc40.noarch.rpm: Already downloaded
[SKIPPED] python3-iniconfig-1.1.1-14.fc40.noarch.rpm: Already downloaded
[SKIPPED] python3-jinja2-3.1.2-5.fc40.noarch.rpm: Already downloaded
[SKIPPED] python3-libs-3.12.0~rc1-1.fc40.x86_64.rpm: Already downloaded
[SKIPPED] python3-markupsafe-2.1.3-2.fc40.x86_64.rpm: Already downloaded
[SKIPPED] python3-pygments-2.15.1-4.fc40.noarch.rpm: Already downloaded
[SKIPPED] python3-pytest-7.3.2-4.fc40.noarch.rpm: Already downloaded
[SKIPPED] python3-requests-2.28.2-5.fc40.noarch.rpm: Already downloaded
[SKIPPED] python3-six-1.16.0-12.fc40.noarch.rpm: Already downloaded
[SKIPPED] python3-sphinx-7.0.1-1.fc40.noarch.rpm: Already downloaded
[SKIPPED] python3-urllib3+socks-1.26.16-2.fc40.noarch.rpm: Already downloaded
[SKIPPED] python3-urllib3-1.26.16-2.fc40.noarch.rpm: Already downloaded
[SKIPPED] abattis-cantarell-vf-fonts-0.301-10.fc39.noarch.rpm: Already downloaded
[SKIPPED] adobe-mappings-cmap-20230622-1.fc39.noarch.rpm: Already downloaded
[SKIPPED] adobe-mappings-cmap-deprecated-20230622-1.fc39.noarch.rpm: Already downloaded
[SKIPPED] adobe-mappings-pdf-20190401-5.fc39.noarch.rpm: Already downloaded
[SKIPPED] avahi-libs-0.8-24.fc39.x86_64.rpm: Already downloaded
[SKIPPED] cairo-1.17.8-5.fc39.x86_64.rpm: Already downloaded
[SKIPPED] cairo-gobject-1.17.8-5.fc39.x86_64.rpm: Already downloaded
[SKIPPED] cups-libs-2.4.6-4.fc40.x86_64.rpm: Already downloaded
[SKIPPED] dbus-libs-1.14.8-2.fc39.x86_64.rpm: Already downloaded
[SKIPPED] default-fonts-core-sans-4.0-8.fc40.noarch.rpm: Already downloaded
[SKIPPED] expat-2.5.0-3.fc39.x86_64.rpm: Already downloaded
[SKIPPED] flexiblas-3.3.1-5.fc39.x86_64.rpm: Already downloaded
[SKIPPED] flexiblas-netlib-3.3.1-5.fc39.x86_64.rpm: Already downloaded
[SKIPPED] flexiblas-openblas-openmp-3.3.1-5.fc39.x86_64.rpm: Already downloaded
[SKIPPED] fontconfig-2.14.2-4.fc39.x86_64.rpm: Already downloaded
[SKIPPED] fonts-filesystem-2.0.5-12.fc39.noarch.rpm: Already downloaded
[SKIPPED] freetype-2.13.1-2.fc39.x86_64.rpm: Already downloaded
[SKIPPED] fribidi-1.0.13-2.fc39.x86_64.rpm: Already downloaded
[SKIPPED] gd-2.3.3-12.fc39.x86_64.rpm: Already downloaded
[SKIPPED] gdk-pixbuf2-2.42.10-5.fc39.x86_64.rpm: Already downloaded
[SKIPPED] glib2-2.77.2-1.fc40.x86_64.rpm: Already downloaded
[SKIPPED] gnutls-3.8.0-7.fc39.x86_64.rpm: Already downloaded
[SKIPPED] google-droid-sans-fonts-20200215-15.fc39.noarch.rpm: Already downloaded
[SKIPPED] google-noto-fonts-common-20230801-2.fc40.noarch.rpm: Already downloaded
[SKIPPED] google-noto-sans-vf-fonts-20230801-2.fc40.noarch.rpm: Already downloaded
[SKIPPED] graphite2-1.3.14-12.fc39.x86_64.rpm: Already downloaded
[SKIPPED] groff-base-1.23.0-2.fc39.x86_64.rpm: Already downloaded
[SKIPPED] harfbuzz-8.1.1-1.fc39.x86_64.rpm: Already downloaded
[SKIPPED] highway-1.0.5-1.fc39.x86_64.rpm: Already downloaded
[SKIPPED] jbig2dec-libs-0.19-10.fc39.x86_64.rpm: Already downloaded
[SKIPPED] jbigkit-libs-2.1-26.fc39.x86_64.rpm: Already downloaded
[SKIPPED] lcms2-2.15-2.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libICE-1.0.10-11.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libSM-1.2.3-13.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libX11-1.8.6-2.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libX11-common-1.8.6-2.fc39.noarch.rpm: Already downloaded
[SKIPPED] libXau-1.0.11-3.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libXext-1.3.5-3.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libXft-2.3.8-3.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libXpm-3.5.15-4.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libXrender-0.9.11-3.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libXt-1.2.1-5.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libaom-3.6.1-2.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libavif-0.11.1-11.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libb2-0.98.1-9.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libdatrie-0.2.13-7.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libdav1d-1.2.1-2.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libgfortran-13.2.1-1.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libgs-10.01.2-3.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libijs-0.35-19.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libimagequant-4.0.1-5.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libjpeg-turbo-2.1.4-3.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libjxl-0.8.2-3.fc40.x86_64.rpm: Already downloaded
[SKIPPED] libpaper-2.1.1-1.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libpng-1.6.37-15.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libquadmath-13.2.1-1.fc39.x86_64.rpm: Already downloaded
[SKIPPED] librsvg2-2.56.90-9.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libthai-0.1.29-6.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libtiff-4.4.0-7.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libtool-ltdl-2.4.7-7.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libvmaf-2.3.0-6.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libwebp-1.3.1-2.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libxcb-1.13.1-12.fc39.x86_64.rpm: Already downloaded
[SKIPPED] libxslt-1.1.38-3.fc39.x86_64.rpm: Already downloaded
[SKIPPED] mpdecimal-2.5.1-7.fc39.x86_64.rpm: Already downloaded
[SKIPPED] ncurses-6.4-6.20230520.fc39.x86_64.rpm: Already downloaded
[SKIPPED] nettle-3.9.1-2.fc39.x86_64.rpm: Already downloaded
[SKIPPED] openblas-0.3.21-6.fc39.x86_64.rpm: Already downloaded
[SKIPPED] openblas-openmp-0.3.21-6.fc39.x86_64.rpm: Already downloaded
[SKIPPED] openjpeg2-2.5.0-4.fc39.x86_64.rpm: Already downloaded
[SKIPPED] pango-1.51.0-1.fc40.x86_64.rpm: Already downloaded
[SKIPPED] perl-AutoLoader-5.74-500.fc39.noarch.rpm: Already downloaded
[SKIPPED] perl-B-1.88-500.fc39.x86_64.rpm: Already downloaded
[SKIPPED] perl-Carp-1.54-500.fc39.noarch.rpm: Already downloaded
[SKIPPED] perl-Class-Struct-0.68-500.fc39.noarch.rpm: Already downloaded
[SKIPPED] perl-Data-Dumper-2.188-501.fc39.x86_64.rpm: Already downloaded
[SKIPPED] perl-Digest-1.20-500.fc39.noarch.rpm: Already downloaded
[SKIPPED] perl-Digest-MD5-2.58-500.fc39.x86_64.rpm: Already downloaded
[SKIPPED] perl-DynaLoader-1.54-500.fc39.x86_64.rpm: Already downloaded
[SKIPPED] perl-Encode-3.19-500.fc39.x86_64.rpm: Already downloaded
[SKIPPED] perl-Errno-1.37-500.fc39.x86_64.rpm: Already downloaded
[SKIPPED] perl-Exporter-5.77-500.fc39.noarch.rpm: Already downloaded
[SKIPPED] perl-Fcntl-1.15-500.fc39.x86_64.rpm: Already downloaded
[SKIPPED] perl-File-Basename-2.86-500.fc39.noarch.rpm: Already downloaded
[SKIPPED] perl-File-Path-2.18-500.fc39.noarch.rpm: Already downloaded
[SKIPPED] perl-File-Temp-0.231.100-500.fc39.noarch.rpm: Already downloaded
[SKIPPED] perl-File-stat-1.13-500.fc39.noarch.rpm: Already downloaded
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Installed:
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adobe-mappings-cmap-20230622-1.fc39.noarch
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xpdf-libs-1:4.04-10.fc39.x86_64
xprop-1.2.5-4.fc39.x86_64
zziplib-0.13.72-5.fc39.x86_64
Complete!
Finish: build setup for snakemake-7.32.3-1.fc40.src.rpm
Start: rpmbuild snakemake-7.32.3-1.fc40.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1691625600
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.v8nRa2
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf snakemake-7.32.3
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/snakemake-7.32.3.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd snakemake-7.32.3
+ rm -rf /builddir/build/BUILD/snakemake-7.32.3-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/snakemake-7.32.3-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/snakemake-7.11.0-docs-no-animated-demo.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP .
recursedown('.')
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recursedown('./tests/test_same_wildcard/expected-results')
recursedown('./tests/test_scatter_gather')
recursedown('./tests/test_scatter_gather/expected-results')
recursedown('./tests/test_scatter_gather/expected-results/gathered')
recursedown('./tests/test_scatter_gather/expected-results/splitted')
recursedown('./tests/test_scatter_gather_multiple_processes')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/gathered')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_a')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_b')
recursedown('./tests/test_script')
recursedown('./tests/test_script/envs')
recursedown('./tests/test_script/expected-results')
recursedown('./tests/test_script/scripts')
recursedown('./tests/test_script_py')
recursedown('./tests/test_script_py/expected-results')
recursedown('./tests/test_script_py/scripts')
recursedown('./tests/test_service_jobs')
recursedown('./tests/test_service_jobs/expected-results')
recursedown('./tests/test_set_resources')
recursedown('./tests/test_set_resources/expected-results')
recursedown('./tests/test_shadow')
recursedown('./tests/test_shadow/expected-results')
recursedown('./tests/test_shadow_copy')
recursedown('./tests/test_shadow_copy/expected-results')
recursedown('./tests/test_shadow_prefix')
recursedown('./tests/test_shadow_prefix/expected-results')
recursedown('./tests/test_shadowed_log')
recursedown('./tests/test_shadowed_log/expected-results')
recursedown('./tests/test_shell')
recursedown('./tests/test_shell/expected-results')
recursedown('./tests/test_singularity')
recursedown('./tests/test_singularity/expected-results')
recursedown('./tests/test_singularity_conda')
recursedown('./tests/test_singularity_conda/expected-results')
recursedown('./tests/test_singularity_global')
recursedown('./tests/test_singularity_global/expected-results')
recursedown('./tests/test_singularity_module')
recursedown('./tests/test_singularity_module/expected-results')
recursedown('./tests/test_singularity_none')
recursedown('./tests/test_singularity_none/expected-results')
recursedown('./tests/test_slurm_mpi')
recursedown('./tests/test_slurm_mpi/envs')
recursedown('./tests/test_slurm_mpi/expected-results')
recursedown('./tests/test_solver')
recursedown('./tests/test_solver/expected-results')
recursedown('./tests/test_source_path')
recursedown('./tests/test_source_path/expected-results')
recursedown('./tests/test_source_path/workflow')
recursedown('./tests/test_source_path/workflow/resources')
recursedown('./tests/test_spaces_in_fnames')
recursedown('./tests/test_spaces_in_fnames/expected-results')
recursedown('./tests/test_speed')
recursedown('./tests/test_srcdir')
recursedown('./tests/test_srcdir/expected-results')
recursedown('./tests/test_static_remote')
recursedown('./tests/test_static_remote/expected-results')
recursedown('./tests/test_strict_mode')
recursedown('./tests/test_strict_mode/expected-results')
recursedown('./tests/test_string_resources')
recursedown('./tests/test_string_resources/expected-results')
recursedown('./tests/test_subworkflow_config')
recursedown('./tests/test_subworkflow_config/expected-results')
recursedown('./tests/test_subworkflows')
recursedown('./tests/test_subworkflows/expected-results')
recursedown('./tests/test_symlink_temp')
recursedown('./tests/test_symlink_temp/expected-results')
recursedown('./tests/test_symlink_time_handling')
recursedown('./tests/test_symlink_time_handling/expected-results')
recursedown('./tests/test_temp')
recursedown('./tests/test_temp/expected-results')
recursedown('./tests/test_temp_expand')
recursedown('./tests/test_temp_expand/expected-results')
recursedown('./tests/test_template_engine')
recursedown('./tests/test_template_engine/expected-results')
recursedown('./tests/test_tes')
recursedown('./tests/test_tes/expected-results')
recursedown('./tests/test_threads')
recursedown('./tests/test_threads/expected-results')
recursedown('./tests/test_threads0')
recursedown('./tests/test_threads0/expected-results')
recursedown('./tests/test_tibanna')
recursedown('./tests/test_tibanna/expected-results')
recursedown('./tests/test_tibanna/scripts')
recursedown('./tests/test_tmpdir')
recursedown('./tests/test_tmpdir/expected-results')
recursedown('./tests/test_touch')
recursedown('./tests/test_touch/expected-results')
recursedown('./tests/test_touch_pipeline_with_temp_dir')
recursedown('./tests/test_touch_pipeline_with_temp_dir/expected-results')
recursedown('./tests/test_touch_remote_prefix')
recursedown('./tests/test_touch_remote_prefix/expected-results')
recursedown('./tests/test_touch_with_directories')
recursedown('./tests/test_touch_with_directories/expected-results')
recursedown('./tests/test_unpack_dict')
recursedown('./tests/test_unpack_dict/expected-results')
recursedown('./tests/test_unpack_list')
recursedown('./tests/test_unpack_list/expected-results')
recursedown('./tests/test_until')
recursedown('./tests/test_until/expected-results')
recursedown('./tests/test_update_config')
recursedown('./tests/test_update_config/expected-results')
recursedown('./tests/test_url_include')
recursedown('./tests/test_url_include/expected-results')
recursedown('./tests/test_use_rule_same_module')
recursedown('./tests/test_use_rule_same_module/expected-results')
recursedown('./tests/test_validate')
recursedown('./tests/test_validate/expected-results')
recursedown('./tests/test_wildcard_count_ambiguity')
recursedown('./tests/test_wildcard_count_ambiguity/expected-results')
recursedown('./tests/test_wildcard_keyword')
recursedown('./tests/test_wildcard_keyword/expected-results')
recursedown('./tests/test_workflow_profile')
recursedown('./tests/test_workflow_profile/dummy-general-profile')
recursedown('./tests/test_workflow_profile/expected-results')
recursedown('./tests/test_workflow_profile/workflow')
recursedown('./tests/test_workflow_profile/workflow/profiles')
recursedown('./tests/test_workflow_profile/workflow/profiles/default')
recursedown('./tests/test_wrapper')
recursedown('./tests/test_wrapper/expected-results')
recursedown('./tests/test_xrootd')
recursedown('./tests/test_yaml_config')
recursedown('./tests/test_yaml_config/expected-results')
+ sed -r -i '1{/^#!/d}' snakemake/executors/jobscript.sh snakemake/executors/google_lifesciences_helper.py
+ sed -r -i 's@"python"@"/usr/bin/python3"@g' tests/test_linting.py
+ sed -r -i /sphinxcontrib-napoleon/d docs/requirements.txt
+ echo 'latex_engine = '\''xelatex'\'''
+ for editor in nano vim
+ cp -vp misc/nano/README.md README-nano.md
+ for editor in nano vim
+ cp -vp misc/vim/README.md README-vim.md
+ RPM_EC=0
++ jobs -p
+ exit 0
+ umask 022
+ cd /builddir/build/BUILD
+ cd snakemake-7.32.3
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.QwjXmi
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/snakemake-7.32.3/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ TMPDIR=/builddir/build/BUILD/snakemake-7.32.3/.pyproject-builddir
+ RPM_TOXENV=py312
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.3/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.3-1.fc40.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt
Handling sphinx >=3 from requirements file docs/requirements.txt
Requirement satisfied: sphinx >=3
(installed: sphinx 7.0.1)
Handling sphinx-argparse from requirements file docs/requirements.txt
Requirement not satisfied: sphinx-argparse
Handling sphinx_rtd_theme from requirements file docs/requirements.txt
Requirement not satisfied: sphinx_rtd_theme
Handling docutils from requirements file docs/requirements.txt
Requirement satisfied: docutils
(installed: docutils 0.20.1)
Handling myst-parser from requirements file docs/requirements.txt
Requirement not satisfied: myst-parser
Handling configargparse from requirements file docs/requirements.txt
Requirement satisfied: configargparse
(installed: configargparse 1.5.5)
Handling appdirs from requirements file docs/requirements.txt
Requirement not satisfied: appdirs
Exiting dependency generation pass: all requirements files
+ cat /builddir/build/BUILD/snakemake-7.32.3-1.fc40.x86_64-pyproject-buildrequires
+ rm -rfv '*.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/snakemake-7.32.3-1.fc40.buildreqs.nosrc.rpm
INFO: Going to install missing dynamic buildrequires
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 45 kB/s | 1.5 kB 00:00
Copr repository 25 MB/s | 3.9 MB 00:00
fedora 737 kB/s | 22 kB 00:00
fedora 2.3 MB/s | 1.7 MB 00:00
Package librsvg2-tools-2.56.90-9.fc39.x86_64 is already installed.
Package texlive-xindy-11:svn65958-77.fc39.x86_64 is already installed.
Package help2man-1.49.3-3.fc39.noarch is already installed.
Package latexmk-4.80-2.fc39.noarch is already installed.
Package make-1:4.4.1-2.fc39.x86_64 is already installed.
Package pyproject-rpm-macros-1.9.0-2.fc40.noarch is already installed.
Package python3-devel-3.12.0~rc1-1.fc40.x86_64 is already installed.
Package python3-devel-3.12.0~rc1-1.fc40.x86_64 is already installed.
Package python3-sphinx-latex-1:7.0.1-1.fc40.noarch is already installed.
Package python3-boto3-1.28.25-1.fc40.noarch is already installed.
Package python3-configargparse-1.5.5-2.fc39.noarch is already installed.
Package python3-configargparse-1.5.5-2.fc39.noarch is already installed.
Package python3-docutils-0.20.1-1.fc40.noarch is already installed.
Package python3-packaging-23.1-4.fc39.noarch is already installed.
Package python3-pandas-1.5.3-7.fc39~bootstrap.x86_64 is already installed.
Package python3-pytest-7.3.2-4.fc40.noarch is already installed.
Package python3-requests-mock-1.10.0-5.fc40.noarch is already installed.
Package python3-sphinx-1:7.0.1-1.fc40.noarch is already installed.
Package texlive-xetex-11:svn66203-77.fc39.x86_64 is already installed.
Package vim-filesystem-2:9.0.1677-3.fc39.noarch is already installed.
Dependencies resolved.
=======================================================================================
Package Arch Version Repo Size
=======================================================================================
Installing:
python3-appdirs noarch 1.4.4-11.fc40 copr_base 23 k
python3-myst-parser noarch 2.0.0-2.fc39 fedora 201 k
python3-pip noarch 23.2.1-1.fc40 copr_base 2.9 M
python3-sphinx-argparse noarch 0.4.0-4.fc39 fedora 39 k
python3-sphinx_rtd_theme noarch 1.2.2-1.fc40 copr_base 74 k
Installing dependencies:
fontawesome4-fonts noarch 1:4.7.0-18.fc39 fedora 204 k
google-roboto-slab-fonts noarch 1.100263-0.21.20150923git.fc39 fedora 239 k
lato-fonts noarch 2.015-17.fc39 fedora 3.1 M
libyaml x86_64 0.2.5-12.fc39 fedora 59 k
python3-markdown-it-py noarch 3.0.0-2.fc39 fedora 199 k
python3-mdit-py-plugins noarch 0.4.0-2.fc39 fedora 120 k
python3-mdurl noarch 0.1.2-4.fc39 fedora 31 k
python3-pyyaml x86_64 6.0.1-12.fc40 copr_base 219 k
python3-sphinxcontrib-jquery noarch 4.1-3.fc39 fedora 113 k
Transaction Summary
=======================================================================================
Install 14 Packages
Total size: 7.5 M
Total download size: 4.5 M
Installed size: 30 M
Downloading Packages:
[SKIPPED] python3-pip-23.2.1-1.fc40.noarch.rpm: Already downloaded
[SKIPPED] libyaml-0.2.5-12.fc39.x86_64.rpm: Already downloaded
(3/14): python3-appdirs-1.4.4-11.fc40.noarch.rp 741 kB/s | 23 kB 00:00
(4/14): python3-sphinx_rtd_theme-1.2.2-1.fc40.n 1.5 MB/s | 74 kB 00:00
(5/14): python3-pyyaml-6.0.1-12.fc40.x86_64.rpm 3.5 MB/s | 219 kB 00:00
(6/14): fontawesome4-fonts-4.7.0-18.fc39.noarch 631 kB/s | 204 kB 00:00
(7/14): google-roboto-slab-fonts-1.100263-0.21. 742 kB/s | 239 kB 00:00
(8/14): python3-mdit-py-plugins-0.4.0-2.fc39.no 1.4 MB/s | 120 kB 00:00
(9/14): python3-markdown-it-py-3.0.0-2.fc39.noa 1.0 MB/s | 199 kB 00:00
(10/14): python3-mdurl-0.1.2-4.fc39.noarch.rpm 262 kB/s | 31 kB 00:00
(11/14): python3-sphinx-argparse-0.4.0-4.fc39.n 653 kB/s | 39 kB 00:00
(12/14): python3-myst-parser-2.0.0-2.fc39.noarc 2.1 MB/s | 201 kB 00:00
(13/14): lato-fonts-2.015-17.fc39.noarch.rpm 5.1 MB/s | 3.1 MB 00:00
(14/14): python3-sphinxcontrib-jquery-4.1-3.fc3 1.6 MB/s | 113 kB 00:00
--------------------------------------------------------------------------------
Total 6.1 MB/s | 4.5 MB 00:00
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Preparing : 1/1
Installing : python3-sphinxcontrib-jquery-4.1-3.fc39.noarch 1/14
Installing : python3-mdurl-0.1.2-4.fc39.noarch 2/14
Installing : python3-markdown-it-py-3.0.0-2.fc39.noarch 3/14
Installing : python3-mdit-py-plugins-0.4.0-2.fc39.noarch 4/14
Installing : libyaml-0.2.5-12.fc39.x86_64 5/14
Installing : python3-pyyaml-6.0.1-12.fc40.x86_64 6/14
Installing : lato-fonts-2.015-17.fc39.noarch 7/14
Installing : google-roboto-slab-fonts-1.100263-0.21.20150923git 8/14
Installing : fontawesome4-fonts-1:4.7.0-18.fc39.noarch 9/14
Installing : python3-sphinx_rtd_theme-1.2.2-1.fc40.noarch 10/14
Installing : python3-myst-parser-2.0.0-2.fc39.noarch 11/14
Installing : python3-sphinx-argparse-0.4.0-4.fc39.noarch 12/14
Installing : python3-pip-23.2.1-1.fc40.noarch 13/14
Installing : python3-appdirs-1.4.4-11.fc40.noarch 14/14
Running scriptlet: python3-appdirs-1.4.4-11.fc40.noarch 14/14
Verifying : python3-appdirs-1.4.4-11.fc40.noarch 1/14
Verifying : python3-pip-23.2.1-1.fc40.noarch 2/14
Verifying : python3-pyyaml-6.0.1-12.fc40.x86_64 3/14
Verifying : python3-sphinx_rtd_theme-1.2.2-1.fc40.noarch 4/14
Verifying : fontawesome4-fonts-1:4.7.0-18.fc39.noarch 5/14
Verifying : google-roboto-slab-fonts-1.100263-0.21.20150923git 6/14
Verifying : lato-fonts-2.015-17.fc39.noarch 7/14
Verifying : libyaml-0.2.5-12.fc39.x86_64 8/14
Verifying : python3-markdown-it-py-3.0.0-2.fc39.noarch 9/14
Verifying : python3-mdit-py-plugins-0.4.0-2.fc39.noarch 10/14
Verifying : python3-mdurl-0.1.2-4.fc39.noarch 11/14
Verifying : python3-myst-parser-2.0.0-2.fc39.noarch 12/14
Verifying : python3-sphinx-argparse-0.4.0-4.fc39.noarch 13/14
Verifying : python3-sphinxcontrib-jquery-4.1-3.fc39.noarch 14/14
Installed:
fontawesome4-fonts-1:4.7.0-18.fc39.noarch
google-roboto-slab-fonts-1.100263-0.21.20150923git.fc39.noarch
lato-fonts-2.015-17.fc39.noarch
libyaml-0.2.5-12.fc39.x86_64
python3-appdirs-1.4.4-11.fc40.noarch
python3-markdown-it-py-3.0.0-2.fc39.noarch
python3-mdit-py-plugins-0.4.0-2.fc39.noarch
python3-mdurl-0.1.2-4.fc39.noarch
python3-myst-parser-2.0.0-2.fc39.noarch
python3-pip-23.2.1-1.fc40.noarch
python3-pyyaml-6.0.1-12.fc40.x86_64
python3-sphinx-argparse-0.4.0-4.fc39.noarch
python3-sphinx_rtd_theme-1.2.2-1.fc40.noarch
python3-sphinxcontrib-jquery-4.1-3.fc39.noarch
Complete!
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1691625600
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.zeCGyQ
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf snakemake-7.32.3
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/snakemake-7.32.3.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd snakemake-7.32.3
+ rm -rf /builddir/build/BUILD/snakemake-7.32.3-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/snakemake-7.32.3-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/snakemake-7.11.0-docs-no-animated-demo.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP .
recursedown('.')
recursedown('./.github')
recursedown('./.github/ISSUE_TEMPLATE')
recursedown('./.github/workflows')
recursedown('./.github/workflows/scripts')
recursedown('./docs')
recursedown('./docs/_static')
recursedown('./docs/apidocs')
recursedown('./docs/apidocs/api_reference')
recursedown('./docs/apidocs/api_reference/internal')
recursedown('./docs/executing')
recursedown('./docs/executor_tutorial')
recursedown('./docs/executor_tutorial/workflow')
recursedown('./docs/getting_started')
recursedown('./docs/getting_started/img')
recursedown('./docs/project_info')
recursedown('./docs/project_info/img')
recursedown('./docs/snakefiles')
recursedown('./docs/snakefiles/images')
recursedown('./docs/tutorial')
recursedown('./docs/tutorial/workflow')
recursedown('./examples')
recursedown('./examples/c')
recursedown('./examples/c/include')
recursedown('./examples/c/src')
recursedown('./examples/cufflinks')
recursedown('./examples/cufflinks/mapped')
recursedown('./examples/flux')
recursedown('./examples/hello-world')
recursedown('./examples/hello-world/envs')
recursedown('./examples/hello-world/scripts')
recursedown('./examples/idea')
recursedown('./examples/latex')
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recursedown('./tests/test_protected_symlink_output')
recursedown('./tests/test_protected_symlink_output/expected-results')
recursedown('./tests/test_r_wrapper')
recursedown('./tests/test_remote')
recursedown('./tests/test_remote/expected-results')
recursedown('./tests/test_remote_auto')
recursedown('./tests/test_remote_auto/expected-results')
recursedown('./tests/test_remote_azure')
recursedown('./tests/test_remote_gs')
recursedown('./tests/test_remote_gs/expected-results')
recursedown('./tests/test_remote_http')
recursedown('./tests/test_remote_http/expected-results')
recursedown('./tests/test_remote_irods')
recursedown('./tests/test_remote_irods/expected-results')
recursedown('./tests/test_remote_irods/setup-data')
recursedown('./tests/test_remote_irods/test-data')
recursedown('./tests/test_remote_log')
recursedown('./tests/test_remote_log/expected-results')
recursedown('./tests/test_remote_ncbi')
recursedown('./tests/test_remote_ncbi/expected-results')
recursedown('./tests/test_remote_ncbi_simple')
recursedown('./tests/test_remote_ncbi_simple/expected-results')
recursedown('./tests/test_remote_sftp')
recursedown('./tests/test_remote_sftp/expected-results')
recursedown('./tests/test_remote_zenodo')
recursedown('./tests/test_remote_zenodo/expected-results')
recursedown('./tests/test_report')
recursedown('./tests/test_report/.snakemake')
recursedown('./tests/test_report/.snakemake/metadata')
recursedown('./tests/test_report/data')
recursedown('./tests/test_report/envs')
recursedown('./tests/test_report/expected-results')
recursedown('./tests/test_report/report')
recursedown('./tests/test_report/testdir')
recursedown('./tests/test_report_dir')
recursedown('./tests/test_report_dir/expected-results')
recursedown('./tests/test_report_dir/test')
recursedown('./tests/test_report_dir/test/js')
./setup.py: no change
./versioneer.py: no change
./.github/workflows/scripts/sacct-proxy.py: updating
./docs/conf.py: updating
./docs/apidocs/conf.py: updating
./examples/hello-world/scripts/plot-hist.py: no change
./snakemake/__init__.py: no change
./snakemake/__main__.py: no change
./snakemake/_version.py: no change
./snakemake/benchmark.py: no change
./snakemake/checkpoints.py: no change
./snakemake/cwl.py: no change
./snakemake/dag.py: no change
./snakemake/decorators.py: no change
./snakemake/exceptions.py: no change
./snakemake/gui.py: no change
./snakemake/interfaces.py: no change
./snakemake/io.py: no change
./snakemake/jobs.py: no change
./snakemake/logging.py: no change
./snakemake/modules.py: no change
./snakemake/notebook.py: no change
./snakemake/output_index.py: no change
./snakemake/parser.py: no change
./snakemake/path_modifier.py: no change
./snakemake/persistence.py: no change
./snakemake/profiles.py: no change
./snakemake/resources.py: no change
./snakemake/ruleinfo.py: no change
./snakemake/rules.py: no change
./snakemake/scheduler.py: no change
./snakemake/script.py: no change
./snakemake/shell.py: no change
./snakemake/sourcecache.py: no change
./snakemake/stats.py: no change
./snakemake/target_jobs.py: no change
./snakemake/utils.py: no change
./snakemake/workflow.py: no change
./snakemake/wrapper.py: no change
./snakemake/caching/__init__.py: no change
./snakemake/caching/hash.py: no change
./snakemake/caching/local.py: no change
./snakemake/caching/remote.py: no change
./snakemake/common/__init__.py: no change
./snakemake/common/tbdstring.py: no change
./snakemake/deployment/__init__.py: no change
./snakemake/deployment/conda.py: no change
./snakemake/deployment/containerize.py: no change
./snakemake/deployment/env_modules.py: no change
./snakemake/deployment/singularity.py: no change
./snakemake/executors/__init__.py: no change
./snakemake/executors/azure_batch.py: no change
./snakemake/executors/common.py: no change
./snakemake/executors/flux.py: no change
./snakemake/executors/ga4gh_tes.py: no change
./snakemake/executors/google_lifesciences.py: no change
./snakemake/executors/google_lifesciences_helper.py: updating
./snakemake/executors/slurm/__init__.py: no change
./snakemake/executors/slurm/slurm_jobstep.py: no change
./snakemake/executors/slurm/slurm_submit.py: no change
./snakemake/linting/__init__.py: no change
./snakemake/linting/links.py: no change
./snakemake/linting/rules.py: no change
./snakemake/linting/snakefiles.py: no change
./snakemake/remote/AzBlob.py: no change
./snakemake/remote/EGA.py: no change
./snakemake/remote/FTP.py: no change
./snakemake/remote/GS.py: no change
./snakemake/remote/HTTP.py: no change
./snakemake/remote/NCBI.py: no change
./snakemake/remote/S3.py: no change
./snakemake/remote/S3Mocked.py: no change
./snakemake/remote/SFTP.py: no change
./snakemake/remote/XRootD.py: no change
./snakemake/remote/__init__.py: no change
./snakemake/remote/dropbox.py: no change
./snakemake/remote/gfal.py: no change
./snakemake/remote/gridftp.py: no change
./snakemake/remote/iRODS.py: no change
./snakemake/remote/webdav.py: no change
./snakemake/remote/zenodo.py: no change
./snakemake/report/__init__.py: no change
./snakemake/report/rulegraph_spec.py: no change
./snakemake/report/data/__init__.py: no change
./snakemake/report/data/categories.py: no change
./snakemake/report/data/common.py: no change
./snakemake/report/data/packages.py: no change
./snakemake/report/data/results.py: no change
./snakemake/report/data/rulegraph.py: no change
./snakemake/report/data/rules.py: no change
./snakemake/report/data/runtimes.py: no change
./snakemake/report/data/timeline.py: no change
./snakemake/report/template/__init__.py: no change
./snakemake/report/template/components/__init__.py: no change
./snakemake/template_rendering/__init__.py: no change
./snakemake/template_rendering/jinja2.py: no change
./snakemake/template_rendering/yte.py: no change
./snakemake/unit_tests/__init__.py: no change
./snakemake/unit_tests/templates/__init__.py: no change
./tests/__init__.py: no change
./tests/common.py: no change
./tests/conftest.py: no change
./tests/test_azure_batch_executor.py: no change
./tests/test_expand.py: no change
./tests/test_google_lifesciences.py: no change
./tests/test_io.py: no change
./tests/test_kubernetes.py: no change
./tests/test_linting.py: no change
./tests/test_persistence.py: no change
./tests/test_schema.py: no change
./tests/test_script.py: no change
./tests/test_slurm.py: no change
./tests/test_tes.py: no change
./tests/test_tibanna.py: no change
./tests/testapi.py: no change
./tests/tests.py: no change
./tests/test14/qsub.py: updating
./tests/test_benchmark/script.py: updating
./tests/test_conda_python_3_7_script/test_script.py: no change
./tests/test_conda_python_script/test_script.py: no change
./tests/test_filegraph/scripts/vis.py: no change
./tests/test_generate_unit_tests/expected-results/.tests/unit/test_a.py: no change
./tests/test_generate_unit_tests/expected-results/.tests/unit/test_all.py: no change
./tests/test_generate_unit_tests/expected-results/.tests/unit/test_b.py: no change
./tests/test_get_log_both/wrapper.py: no change
./tests/test_get_log_complex/wrapper.py: no change
./tests/test_get_log_none/wrapper.py: no change
./tests/test_get_log_stderr/wrapper.py: no change
./tests/test_get_log_stdout/wrapper.py: no change
./tests/test_github_issue1158/qsub.py: updating
./tests/test_github_issue627/job.py: updating
./tests/test_github_issue_14/local_script.py: no change
./tests/test_github_issue_14/pythonTest.py: updating
./tests/test_handover/script.py: no change
./tests/test_issue1046/my_wrapper/wrapper.py: no change
./tests/test_issue916/local_script.py: no change
./tests/test_issue916/pythonTest.py: updating
./tests/test_job_properties/qsub.py: updating
./tests/test_local_import/bar.py: no change
./tests/test_local_import/foo/__init__.py: no change
./tests/test_paramspace/scripts/simulate.py: no change
./tests/test_paramspace_single_wildcard/scripts/simulate.py: no change
./tests/test_prebuilt_conda_script/test.py: no change
./tests/test_prebuilt_conda_script/dummy_package/src/dummy/__init__.py: no change
./tests/test_prebuilt_conda_script/dummy_package/src/dummy/dummy.py: no change
./tests/test_report_display_code/test.py: no change
./tests/test_restartable_job_cmd_exit_1/qsub.py: updating
./tests/test_restartable_job_qsub_exit_1/qsub.py: updating
./tests/test_script/scripts/test.py: no change
./tests/test_script_py/scripts/test.py: no change
./tests/test_singularity/script.py: no change
./tests/test_singularity_module/script.py: no change
./tests/test_static_remote/S3MockedForStaticTest.py: no change
./tests/test_static_remote/__init__.py: no change
./tests/test_string_resources/qsub.py: updating
./tests/test_tibanna/cleanup.py: no change
./tests/test_tibanna/scripts/step2.py: no change
recursedown('./tests/test_report_display_code')
recursedown('./tests/test_report_display_code/expected-results')
recursedown('./tests/test_report_zip')
recursedown('./tests/test_report_zip/.snakemake')
recursedown('./tests/test_report_zip/.snakemake/metadata')
recursedown('./tests/test_report_zip/data')
recursedown('./tests/test_report_zip/envs')
recursedown('./tests/test_report_zip/expected-results')
recursedown('./tests/test_report_zip/report')
recursedown('./tests/test_report_zip/testdir')
recursedown('./tests/test_restartable_job_cmd_exit_1')
recursedown('./tests/test_restartable_job_cmd_exit_1/expected-results')
recursedown('./tests/test_restartable_job_qsub_exit_1')
recursedown('./tests/test_restartable_job_qsub_exit_1/expected-results')
recursedown('./tests/test_retries')
recursedown('./tests/test_retries/expected-results')
recursedown('./tests/test_retries_not_overriden')
recursedown('./tests/test_retries_not_overriden/expected-results')
recursedown('./tests/test_rule_defined_in_for_loop')
recursedown('./tests/test_rule_defined_in_for_loop/expected-results')
recursedown('./tests/test_rule_inheritance_globals')
recursedown('./tests/test_rule_inheritance_globals/.snakemake')
recursedown('./tests/test_rule_inheritance_globals/.snakemake/metadata')
recursedown('./tests/test_rule_inheritance_globals/expected-results')
recursedown('./tests/test_ruledag')
recursedown('./tests/test_ruledeps')
recursedown('./tests/test_ruledeps/expected-results')
recursedown('./tests/test_run_namedlist')
recursedown('./tests/test_run_namedlist/expected-results')
recursedown('./tests/test_same_wildcard')
recursedown('./tests/test_same_wildcard/expected-results')
recursedown('./tests/test_scatter_gather')
recursedown('./tests/test_scatter_gather/expected-results')
recursedown('./tests/test_scatter_gather/expected-results/gathered')
recursedown('./tests/test_scatter_gather/expected-results/splitted')
recursedown('./tests/test_scatter_gather_multiple_processes')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/gathered')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_a')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_b')
recursedown('./tests/test_script')
recursedown('./tests/test_script/envs')
recursedown('./tests/test_script/expected-results')
recursedown('./tests/test_script/scripts')
recursedown('./tests/test_script_py')
recursedown('./tests/test_script_py/expected-results')
recursedown('./tests/test_script_py/scripts')
recursedown('./tests/test_service_jobs')
recursedown('./tests/test_service_jobs/expected-results')
recursedown('./tests/test_set_resources')
recursedown('./tests/test_set_resources/expected-results')
recursedown('./tests/test_shadow')
recursedown('./tests/test_shadow/expected-results')
recursedown('./tests/test_shadow_copy')
recursedown('./tests/test_shadow_copy/expected-results')
recursedown('./tests/test_shadow_prefix')
recursedown('./tests/test_shadow_prefix/expected-results')
recursedown('./tests/test_shadowed_log')
recursedown('./tests/test_shadowed_log/expected-results')
recursedown('./tests/test_shell')
recursedown('./tests/test_shell/expected-results')
recursedown('./tests/test_singularity')
recursedown('./tests/test_singularity/expected-results')
recursedown('./tests/test_singularity_conda')
recursedown('./tests/test_singularity_conda/expected-results')
recursedown('./tests/test_singularity_global')
recursedown('./tests/test_singularity_global/expected-results')
recursedown('./tests/test_singularity_module')
recursedown('./tests/test_singularity_module/expected-results')
recursedown('./tests/test_singularity_none')
recursedown('./tests/test_singularity_none/expected-results')
recursedown('./tests/test_slurm_mpi')
recursedown('./tests/test_slurm_mpi/envs')
recursedown('./tests/test_slurm_mpi/expected-results')
recursedown('./tests/test_solver')
recursedown('./tests/test_solver/expected-results')
recursedown('./tests/test_source_path')
recursedown('./tests/test_source_path/expected-results')
recursedown('./tests/test_source_path/workflow')
recursedown('./tests/test_source_path/workflow/resources')
recursedown('./tests/test_spaces_in_fnames')
recursedown('./tests/test_spaces_in_fnames/expected-results')
recursedown('./tests/test_speed')
recursedown('./tests/test_srcdir')
recursedown('./tests/test_srcdir/expected-results')
recursedown('./tests/test_static_remote')
recursedown('./tests/test_static_remote/expected-results')
recursedown('./tests/test_strict_mode')
recursedown('./tests/test_strict_mode/expected-results')
recursedown('./tests/test_string_resources')
recursedown('./tests/test_string_resources/expected-results')
recursedown('./tests/test_subworkflow_config')
recursedown('./tests/test_subworkflow_config/expected-results')
recursedown('./tests/test_subworkflows')
recursedown('./tests/test_subworkflows/expected-results')
recursedown('./tests/test_symlink_temp')
recursedown('./tests/test_symlink_temp/expected-results')
recursedown('./tests/test_symlink_time_handling')
recursedown('./tests/test_symlink_time_handling/expected-results')
recursedown('./tests/test_temp')
recursedown('./tests/test_temp/expected-results')
recursedown('./tests/test_temp_expand')
recursedown('./tests/test_temp_expand/expected-results')
recursedown('./tests/test_template_engine')
recursedown('./tests/test_template_engine/expected-results')
recursedown('./tests/test_tes')
recursedown('./tests/test_tes/expected-results')
recursedown('./tests/test_threads')
recursedown('./tests/test_threads/expected-results')
recursedown('./tests/test_threads0')
recursedown('./tests/test_threads0/expected-results')
recursedown('./tests/test_tibanna')
recursedown('./tests/test_tibanna/expected-results')
recursedown('./tests/test_tibanna/scripts')
recursedown('./tests/test_tmpdir')
recursedown('./tests/test_tmpdir/expected-results')
recursedown('./tests/test_touch')
recursedown('./tests/test_touch/expected-results')
recursedown('./tests/test_touch_pipeline_with_temp_dir')
recursedown('./tests/test_touch_pipeline_with_temp_dir/expected-results')
recursedown('./tests/test_touch_remote_prefix')
recursedown('./tests/test_touch_remote_prefix/expected-results')
recursedown('./tests/test_touch_with_directories')
recursedown('./tests/test_touch_with_directories/expected-results')
recursedown('./tests/test_unpack_dict')
recursedown('./tests/test_unpack_dict/expected-results')
recursedown('./tests/test_unpack_list')
recursedown('./tests/test_unpack_list/expected-results')
recursedown('./tests/test_until')
recursedown('./tests/test_until/expected-results')
recursedown('./tests/test_update_config')
recursedown('./tests/test_update_config/expected-results')
recursedown('./tests/test_url_include')
recursedown('./tests/test_url_include/expected-results')
recursedown('./tests/test_use_rule_same_module')
recursedown('./tests/test_use_rule_same_module/expected-results')
recursedown('./tests/test_validate')
recursedown('./tests/test_validate/expected-results')
recursedown('./tests/test_wildcard_count_ambiguity')
recursedown('./tests/test_wildcard_count_ambiguity/expected-results')
recursedown('./tests/test_wildcard_keyword')
recursedown('./tests/test_wildcard_keyword/expected-results')
recursedown('./tests/test_workflow_profile')
recursedown('./tests/test_workflow_profile/dummy-general-profile')
recursedown('./tests/test_workflow_profile/expected-results')
recursedown('./tests/test_workflow_profile/workflow')
recursedown('./tests/test_workflow_profile/workflow/profiles')
recursedown('./tests/test_workflow_profile/workflow/profiles/default')
recursedown('./tests/test_wrapper')
recursedown('./tests/test_wrapper/expected-results')
recursedown('./tests/test_xrootd')
recursedown('./tests/test_yaml_config')
recursedown('./tests/test_yaml_config/expected-results')
+ sed -r -i '1{/^#!/d}' snakemake/executors/jobscript.sh snakemake/executors/google_lifesciences_helper.py
'misc/nano/README.md' -> 'README-nano.md'
'misc/vim/README.md' -> 'README-vim.md'
+ sed -r -i 's@"python"@"/usr/bin/python3"@g' tests/test_linting.py
+ sed -r -i /sphinxcontrib-napoleon/d docs/requirements.txt
+ echo 'latex_engine = '\''xelatex'\'''
+ for editor in nano vim
+ cp -vp misc/nano/README.md README-nano.md
+ for editor in nano vim
+ cp -vp misc/vim/README.md README-vim.md
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.VK4omz
+ umask 022
+ cd /builddir/build/BUILD
+ cd snakemake-7.32.3
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/snakemake-7.32.3/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ TMPDIR=/builddir/build/BUILD/snakemake-7.32.3/.pyproject-builddir
+ RPM_TOXENV=py312
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.3/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.3-1.fc40.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt
Handling sphinx >=3 from requirements file docs/requirements.txt
Requirement satisfied: sphinx >=3
(installed: sphinx 7.0.1)
Handling sphinx-argparse from requirements file docs/requirements.txt
Requirement satisfied: sphinx-argparse
(installed: sphinx-argparse 0.4.0)
Handling sphinx_rtd_theme from requirements file docs/requirements.txt
Requirement satisfied: sphinx_rtd_theme
(installed: sphinx_rtd_theme 1.2.2)
Handling docutils from requirements file docs/requirements.txt
Requirement satisfied: docutils
(installed: docutils 0.20.1)
Handling myst-parser from requirements file docs/requirements.txt
Requirement satisfied: myst-parser
(installed: myst-parser 2.0.0)
Handling configargparse from requirements file docs/requirements.txt
Requirement satisfied: configargparse
(installed: configargparse 1.5.5)
Handling appdirs from requirements file docs/requirements.txt
Requirement satisfied: appdirs
(installed: appdirs 1.4.4)
Handling setuptools>=42 from build-system.requires
Requirement not satisfied: setuptools>=42
Handling tomli; python_version < "3.11" from build-system.requires
Ignoring alien requirement: tomli; python_version < "3.11"
Exiting dependency generation pass: build backend
+ cat /builddir/build/BUILD/snakemake-7.32.3-1.fc40.x86_64-pyproject-buildrequires
+ rm -rfv '*.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/snakemake-7.32.3-1.fc40.buildreqs.nosrc.rpm
INFO: Going to install missing dynamic buildrequires
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 6.3 kB/s | 1.5 kB 00:00
fedora 558 kB/s | 22 kB 00:00
fedora 2.7 MB/s | 1.7 MB 00:00
Package librsvg2-tools-2.56.90-9.fc39.x86_64 is already installed.
Package texlive-xindy-11:svn65958-77.fc39.x86_64 is already installed.
Package help2man-1.49.3-3.fc39.noarch is already installed.
Package latexmk-4.80-2.fc39.noarch is already installed.
Package make-1:4.4.1-2.fc39.x86_64 is already installed.
Package pyproject-rpm-macros-1.9.0-2.fc40.noarch is already installed.
Package python3-devel-3.12.0~rc1-1.fc40.x86_64 is already installed.
Package python3-devel-3.12.0~rc1-1.fc40.x86_64 is already installed.
Package python3-sphinx-latex-1:7.0.1-1.fc40.noarch is already installed.
Package python3-appdirs-1.4.4-11.fc40.noarch is already installed.
Package python3-boto3-1.28.25-1.fc40.noarch is already installed.
Package python3-configargparse-1.5.5-2.fc39.noarch is already installed.
Package python3-configargparse-1.5.5-2.fc39.noarch is already installed.
Package python3-docutils-0.20.1-1.fc40.noarch is already installed.
Package python3-myst-parser-2.0.0-2.fc39.noarch is already installed.
Package python3-packaging-23.1-4.fc39.noarch is already installed.
Package python3-pandas-1.5.3-7.fc39~bootstrap.x86_64 is already installed.
Package python3-pip-23.2.1-1.fc40.noarch is already installed.
Package python3-pytest-7.3.2-4.fc40.noarch is already installed.
Package python3-requests-mock-1.10.0-5.fc40.noarch is already installed.
Package python3-sphinx-1:7.0.1-1.fc40.noarch is already installed.
Package python3-sphinx-argparse-0.4.0-4.fc39.noarch is already installed.
Package python3-sphinx_rtd_theme-1.2.2-1.fc40.noarch is already installed.
Package texlive-xetex-11:svn66203-77.fc39.x86_64 is already installed.
Package vim-filesystem-2:9.0.1677-3.fc39.noarch is already installed.
Dependencies resolved.
================================================================================
Package Architecture Version Repository Size
================================================================================
Installing:
python3-setuptools noarch 67.7.2-5.fc39 fedora 1.5 M
Transaction Summary
================================================================================
Install 1 Package
Total size: 1.5 M
Installed size: 7.0 M
Downloading Packages:
[SKIPPED] python3-setuptools-67.7.2-5.fc39.noarch.rpm: Already downloaded
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Preparing : 1/1
Installing : python3-setuptools-67.7.2-5.fc39.noarch 1/1
Running scriptlet: python3-setuptools-67.7.2-5.fc39.noarch 1/1
Verifying : python3-setuptools-67.7.2-5.fc39.noarch 1/1
Installed:
python3-setuptools-67.7.2-5.fc39.noarch
Complete!
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1691625600
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.0a8iVQ
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf snakemake-7.32.3
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/snakemake-7.32.3.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd snakemake-7.32.3
+ rm -rf /builddir/build/BUILD/snakemake-7.32.3-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/snakemake-7.32.3-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/snakemake-7.11.0-docs-no-animated-demo.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP .
recursedown('.')
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recursedown('./docs/apidocs/api_reference')
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recursedown('./docs/project_info')
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recursedown('./playground')
recursedown('./playground/iteration')
recursedown('./snakemake')
recursedown('./snakemake/caching')
recursedown('./snakemake/common')
recursedown('./snakemake/deployment')
recursedown('./snakemake/executors')
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recursedown('./snakemake/report/template')
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recursedown('./tests/test_unpack_list/expected-results')
recursedown('./tests/test_until')
recursedown('./tests/test_until/expected-results')
recursedown('./tests/test_update_config')
recursedown('./tests/test_update_config/expected-results')
recursedown('./tests/test_url_include')
recursedown('./tests/test_url_include/expected-results')
recursedown('./tests/test_use_rule_same_module')
recursedown('./tests/test_use_rule_same_module/expected-results')
recursedown('./tests/test_validate')
recursedown('./tests/test_validate/expected-results')
recursedown('./tests/test_wildcard_count_ambiguity')
recursedown('./tests/test_wildcard_count_ambiguity/expected-results')
recursedown('./tests/test_wildcard_keyword')
recursedown('./tests/test_wildcard_keyword/expected-results')
recursedown('./tests/test_workflow_profile')
recursedown('./tests/test_workflow_profile/dummy-general-profile')
recursedown('./tests/test_workflow_profile/expected-results')
recursedown('./tests/test_workflow_profile/workflow')
recursedown('./tests/test_workflow_profile/workflow/profiles')
recursedown('./tests/test_workflow_profile/workflow/profiles/default')
recursedown('./tests/test_wrapper')
recursedown('./tests/test_wrapper/expected-results')
recursedown('./tests/test_xrootd')
recursedown('./tests/test_yaml_config')
recursedown('./tests/test_yaml_config/expected-results')
+ sed -r -i '1{/^#!/d}' snakemake/executors/jobscript.sh snakemake/executors/google_lifesciences_helper.py
+ sed -r -i 's@"python"@"/usr/bin/python3"@g' tests/test_linting.py
+ sed -r -i /sphinxcontrib-napoleon/d docs/requirements.txt
+ echo 'latex_engine = '\''xelatex'\'''
+ for editor in nano vim
+ cp -vp misc/nano/README.md README-nano.md
+ for editor in nano vim
+ cp -vp misc/vim/README.md README-vim.md
+ RPM_EC=0
++ jobs -p
+ exit 0
+ umask 022
+ cd /builddir/build/BUILD
+ cd snakemake-7.32.3
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
'misc/nano/README.md' -> 'README-nano.md'
'misc/vim/README.md' -> 'README-vim.md'
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.DDev9x
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/snakemake-7.32.3/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ TMPDIR=/builddir/build/BUILD/snakemake-7.32.3/.pyproject-builddir
+ RPM_TOXENV=py312
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.3/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.3-1.fc40.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt
Handling sphinx >=3 from requirements file docs/requirements.txt
Requirement satisfied: sphinx >=3
(installed: sphinx 7.0.1)
Handling sphinx-argparse from requirements file docs/requirements.txt
Requirement satisfied: sphinx-argparse
(installed: sphinx-argparse 0.4.0)
Handling sphinx_rtd_theme from requirements file docs/requirements.txt
Requirement satisfied: sphinx_rtd_theme
(installed: sphinx_rtd_theme 1.2.2)
Handling docutils from requirements file docs/requirements.txt
Requirement satisfied: docutils
(installed: docutils 0.20.1)
Handling myst-parser from requirements file docs/requirements.txt
Requirement satisfied: myst-parser
(installed: myst-parser 2.0.0)
Handling configargparse from requirements file docs/requirements.txt
Requirement satisfied: configargparse
(installed: configargparse 1.5.5)
Handling appdirs from requirements file docs/requirements.txt
Requirement satisfied: appdirs
(installed: appdirs 1.4.4)
Handling setuptools>=42 from build-system.requires
Requirement satisfied: setuptools>=42
(installed: setuptools 67.7.2)
Handling tomli; python_version < "3.11" from build-system.requires
Ignoring alien requirement: tomli; python_version < "3.11"
running egg_info
creating snakemake.egg-info
writing snakemake.egg-info/PKG-INFO
writing dependency_links to snakemake.egg-info/dependency_links.txt
writing entry points to snakemake.egg-info/entry_points.txt
writing requirements to snakemake.egg-info/requires.txt
writing top-level names to snakemake.egg-info/top_level.txt
writing manifest file 'snakemake.egg-info/SOURCES.txt'
reading manifest file 'snakemake.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.md'
adding license file 'AUTHORS.rst'
writing manifest file 'snakemake.egg-info/SOURCES.txt'
Handling wheel from get_requires_for_build_wheel
Requirement not satisfied: wheel
Exiting dependency generation pass: get_requires_for_build_wheel
+ cat /builddir/build/BUILD/snakemake-7.32.3-1.fc40.x86_64-pyproject-buildrequires
+ rm -rfv '*.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/snakemake-7.32.3-1.fc40.buildreqs.nosrc.rpm
INFO: Going to install missing dynamic buildrequires
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 44 kB/s | 1.5 kB 00:00
fedora 547 kB/s | 22 kB 00:00
fedora 1.5 MB/s | 1.7 MB 00:01
Package librsvg2-tools-2.56.90-9.fc39.x86_64 is already installed.
Package texlive-xindy-11:svn65958-77.fc39.x86_64 is already installed.
Package help2man-1.49.3-3.fc39.noarch is already installed.
Package latexmk-4.80-2.fc39.noarch is already installed.
Package make-1:4.4.1-2.fc39.x86_64 is already installed.
Package pyproject-rpm-macros-1.9.0-2.fc40.noarch is already installed.
Package python3-devel-3.12.0~rc1-1.fc40.x86_64 is already installed.
Package python3-devel-3.12.0~rc1-1.fc40.x86_64 is already installed.
Package python3-sphinx-latex-1:7.0.1-1.fc40.noarch is already installed.
Package python3-appdirs-1.4.4-11.fc40.noarch is already installed.
Package python3-boto3-1.28.25-1.fc40.noarch is already installed.
Package python3-configargparse-1.5.5-2.fc39.noarch is already installed.
Package python3-configargparse-1.5.5-2.fc39.noarch is already installed.
Package python3-docutils-0.20.1-1.fc40.noarch is already installed.
Package python3-myst-parser-2.0.0-2.fc39.noarch is already installed.
Package python3-packaging-23.1-4.fc39.noarch is already installed.
Package python3-pandas-1.5.3-7.fc39~bootstrap.x86_64 is already installed.
Package python3-pip-23.2.1-1.fc40.noarch is already installed.
Package python3-pytest-7.3.2-4.fc40.noarch is already installed.
Package python3-requests-mock-1.10.0-5.fc40.noarch is already installed.
Package python3-setuptools-67.7.2-5.fc39.noarch is already installed.
Package python3-sphinx-1:7.0.1-1.fc40.noarch is already installed.
Package python3-sphinx-argparse-0.4.0-4.fc39.noarch is already installed.
Package python3-sphinx_rtd_theme-1.2.2-1.fc40.noarch is already installed.
Package texlive-xetex-11:svn66203-77.fc39.x86_64 is already installed.
Package vim-filesystem-2:9.0.1677-3.fc39.noarch is already installed.
Dependencies resolved.
================================================================================
Package Architecture Version Repository Size
================================================================================
Installing:
python3-wheel noarch 1:0.41.1-1.fc40 copr_base 148 k
Transaction Summary
================================================================================
Install 1 Package
Total size: 148 k
Installed size: 505 k
Downloading Packages:
[SKIPPED] python3-wheel-0.41.1-1.fc40.noarch.rpm: Already downloaded
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
Preparing : 1/1
Installing : python3-wheel-1:0.41.1-1.fc40.noarch 1/1
Running scriptlet: python3-wheel-1:0.41.1-1.fc40.noarch 1/1
Verifying : python3-wheel-1:0.41.1-1.fc40.noarch 1/1
Installed:
python3-wheel-1:0.41.1-1.fc40.noarch
Complete!
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1691625600
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.dDiFgE
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf snakemake-7.32.3
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/snakemake-7.32.3.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd snakemake-7.32.3
+ rm -rf /builddir/build/BUILD/snakemake-7.32.3-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/snakemake-7.32.3-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/snakemake-7.11.0-docs-no-animated-demo.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP .
recursedown('.')
recursedown('./.github')
recursedown('./.github/ISSUE_TEMPLATE')
recursedown('./.github/workflows')
recursedown('./.github/workflows/scripts')
recursedown('./docs')
recursedown('./docs/_static')
recursedown('./docs/apidocs')
recursedown('./docs/apidocs/api_reference')
recursedown('./docs/apidocs/api_reference/internal')
recursedown('./docs/executing')
recursedown('./docs/executor_tutorial')
recursedown('./docs/executor_tutorial/workflow')
recursedown('./docs/getting_started')
recursedown('./docs/getting_started/img')
recursedown('./docs/project_info')
recursedown('./docs/project_info/img')
recursedown('./docs/snakefiles')
recursedown('./docs/snakefiles/images')
recursedown('./docs/tutorial')
recursedown('./docs/tutorial/workflow')
recursedown('./examples')
recursedown('./examples/c')
recursedown('./examples/c/include')
recursedown('./examples/c/src')
recursedown('./examples/cufflinks')
recursedown('./examples/cufflinks/mapped')
recursedown('./examples/flux')
recursedown('./examples/hello-world')
recursedown('./examples/hello-world/envs')
recursedown('./examples/hello-world/scripts')
recursedown('./examples/idea')
recursedown('./examples/latex')
recursedown('./examples/mirna')
recursedown('./images')
recursedown('./misc')
recursedown('./misc/nano')
recursedown('./misc/nano/syntax')
recursedown('./misc/vim')
recursedown('./misc/vim/ftdetect')
recursedown('./misc/vim/ftplugin')
recursedown('./misc/vim/ftplugin/snakemake')
recursedown('./misc/vim/syntax')
recursedown('./playground')
recursedown('./playground/iteration')
recursedown('./snakemake')
recursedown('./snakemake/caching')
recursedown('./snakemake/common')
recursedown('./snakemake/deployment')
recursedown('./snakemake/executors')
recursedown('./snakemake/executors/slurm')
recursedown('./snakemake/linting')
recursedown('./snakemake/remote')
recursedown('./snakemake/report')
recursedown('./snakemake/report/data')
recursedown('./snakemake/report/template')
recursedown('./snakemake/report/template/components')
recursedown('./snakemake/template_rendering')
recursedown('./snakemake/unit_tests')
recursedown('./snakemake/unit_tests/templates')
recursedown('./tests')
recursedown('./tests/knapsack')
recursedown('./tests/linting')
recursedown('./tests/linting/absolute_paths')
recursedown('./tests/linting/dynamic')
recursedown('./tests/linting/envvars')
recursedown('./tests/linting/iofile_by_index')
recursedown('./tests/linting/log_directive')
recursedown('./tests/linting/long_run')
recursedown('./tests/linting/missing_software_definition')
recursedown('./tests/linting/mixed_func_and_rules')
recursedown('./tests/linting/not_used_params')
recursedown('./tests/linting/params_prefix')
recursedown('./tests/linting/path_add')
recursedown('./tests/linting/singularity')
recursedown('./tests/linting/tab_usage')
recursedown('./tests/linting/version')
recursedown('./tests/profile')
recursedown('./tests/resources')
recursedown('./tests/resources/slurmcluster')
recursedown("./tests/test (with parenthese's)")
recursedown("./tests/test (with parenthese's)/expected-results")
recursedown('./tests/test01')
recursedown('./tests/test01/expected-results')
recursedown('./tests/test01/expected-results/dir')
recursedown('./tests/test02')
recursedown('./tests/test02/expected-results')
recursedown('./tests/test03')
recursedown('./tests/test03/expected-results')
recursedown('./tests/test04')
recursedown('./tests/test04/expected-results')
recursedown('./tests/test05')
recursedown('./tests/test05/expected-results')
recursedown('./tests/test06')
recursedown('./tests/test06/expected-results')
recursedown('./tests/test07')
recursedown('./tests/test07/expected-results')
recursedown('./tests/test08')
recursedown('./tests/test08/expected-results')
recursedown('./tests/test09')
recursedown('./tests/test09/expected-results')
recursedown('./tests/test10')
recursedown('./tests/test10/expected-results')
recursedown('./tests/test11')
recursedown('./tests/test11/expected-results')
recursedown('./tests/test12')
recursedown('./tests/test12/expected-results')
recursedown('./tests/test13')
recursedown('./tests/test13/expected-results')
recursedown('./tests/test14')
recursedown('./tests/test14/expected-results')
recursedown('./tests/test15')
recursedown('./tests/test15/expected-results')
recursedown('./tests/testHighWorkload')
recursedown('./tests/testHighWorkload/mfa')
recursedown('./tests/test_all_temp')
recursedown('./tests/test_all_temp/expected-results')
recursedown('./tests/test_ancient')
recursedown('./tests/test_ancient/expected-results')
recursedown('./tests/test_ancient_dag')
recursedown('./tests/test_ancient_dag/expected-results')
recursedown('./tests/test_archive')
recursedown('./tests/test_archive/expected-results')
recursedown('./tests/test_azure_batch')
recursedown('./tests/test_azure_batch/expected-results')
recursedown('./tests/test_bash')
recursedown('./tests/test_bash/expected-results')
recursedown('./tests/test_batch')
recursedown('./tests/test_batch/expected-results')
recursedown('./tests/test_batch_final')
recursedown('./tests/test_batch_final/expected-results')
recursedown('./tests/test_benchmark')
recursedown('./tests/test_benchmark/expected-results')
recursedown('./tests/test_cache_multioutput')
recursedown('./tests/test_cache_multioutput/expected-results')
recursedown('./tests/test_checkpoint_allowed_rules')
recursedown('./tests/test_checkpoint_allowed_rules/expected-results')
recursedown('./tests/test_checkpoints')
recursedown('./tests/test_checkpoints/expected-results')
recursedown('./tests/test_checkpoints/expected-results/aggregated')
recursedown('./tests/test_checkpoints/samples')
recursedown('./tests/test_checkpoints_dir')
recursedown('./tests/test_checkpoints_dir/expected-results')
recursedown('./tests/test_checkpoints_dir/expected-results/aggregated')
recursedown('./tests/test_checkpoints_dir/samples')
recursedown('./tests/test_cloud_checkpoints_issue574')
recursedown('./tests/test_cloud_checkpoints_issue574/expected-results')
recursedown('./tests/test_cluster_cancelscript')
recursedown('./tests/test_cluster_cancelscript/expected-results')
recursedown('./tests/test_cluster_sidecar')
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recursedown('./tests/test_cluster_statusscript')
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recursedown('./tests/test_cluster_statusscript_multi')
recursedown('./tests/test_cluster_statusscript_multi/expected-results')
recursedown('./tests/test_conda')
recursedown('./tests/test_conda/expected-results')
recursedown('./tests/test_conda_cmd_exe')
recursedown('./tests/test_conda_cmd_exe/expected-results')
recursedown('./tests/test_conda_custom_prefix')
recursedown('./tests/test_conda_custom_prefix/expected-results')
recursedown('./tests/test_conda_function')
recursedown('./tests/test_conda_function/expected-results')
recursedown('./tests/test_conda_named')
recursedown('./tests/test_conda_named/expected-results')
recursedown('./tests/test_conda_pin_file')
recursedown('./tests/test_conda_pin_file/expected-results')
recursedown('./tests/test_conda_python_3_7_script')
recursedown('./tests/test_conda_python_3_7_script/expected-results')
recursedown('./tests/test_conda_python_script')
recursedown('./tests/test_conda_python_script/expected-results')
recursedown('./tests/test_conditional')
recursedown('./tests/test_conditional/expected-results')
recursedown('./tests/test_config')
recursedown('./tests/test_config/expected-results')
recursedown('./tests/test_config_merging')
recursedown('./tests/test_config_merging/expected-results')
recursedown('./tests/test_config_yte')
recursedown('./tests/test_config_yte/expected-results')
recursedown('./tests/test_container')
recursedown('./tests/test_container/expected-results')
recursedown('./tests/test_containerized')
recursedown('./tests/test_containerized/expected-results')
recursedown('./tests/test_convert_to_cwl')
recursedown('./tests/test_converting_path_for_r_script')
recursedown('./tests/test_converting_path_for_r_script/expected-results')
recursedown('./tests/test_core_dependent_threads')
recursedown('./tests/test_core_dependent_threads/expected-results')
recursedown('./tests/test_cwl')
recursedown('./tests/test_cwl/expected-results')
recursedown('./tests/test_default_remote')
recursedown('./tests/test_default_remote/expected-results')
recursedown('./tests/test_default_resources')
recursedown('./tests/test_default_resources/expected-results')
recursedown('./tests/test_default_target')
recursedown('./tests/test_default_target/expected-results')
recursedown('./tests/test_deferred_func_eval')
recursedown('./tests/test_deferred_func_eval/expected-results')
recursedown('./tests/test_delete_all_output')
recursedown('./tests/test_delete_all_output/expected-results')
recursedown('./tests/test_delete_output')
recursedown('./tests/test_delete_output/expected-results')
recursedown('./tests/test_delete_output/expected-results/foo')
recursedown('./tests/test_deploy_hashing')
recursedown('./tests/test_deploy_hashing/expected-results')
recursedown('./tests/test_deploy_script')
recursedown('./tests/test_deploy_script/expected-results')
recursedown('./tests/test_directory')
recursedown('./tests/test_directory/expected-results')
recursedown('./tests/test_directory/expected-results/dir_to_link_to')
recursedown('./tests/test_directory/expected-results/some')
recursedown('./tests/test_directory/expected-results/some/shadow')
recursedown('./tests/test_directory/expected-results/some_other_dir')
recursedown('./tests/test_directory/input_dir')
recursedown('./tests/test_dup_out_patterns')
recursedown('./tests/test_dup_out_patterns/expected-results')
recursedown('./tests/test_dynamic')
recursedown('./tests/test_dynamic/expected-results')
recursedown('./tests/test_dynamic_temp')
recursedown('./tests/test_dynamic_temp/expected-results')
recursedown('./tests/test_empty_include')
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recursedown('./tests/test_url_include')
recursedown('./tests/test_url_include/expected-results')
recursedown('./tests/test_use_rule_same_module')
recursedown('./tests/test_use_rule_same_module/expected-results')
recursedown('./tests/test_validate')
recursedown('./tests/test_validate/expected-results')
recursedown('./tests/test_wildcard_count_ambiguity')
recursedown('./tests/test_wildcard_count_ambiguity/expected-results')
recursedown('./tests/test_wildcard_keyword')
recursedown('./tests/test_wildcard_keyword/expected-results')
recursedown('./tests/test_workflow_profile')
recursedown('./tests/test_workflow_profile/dummy-general-profile')
recursedown('./tests/test_workflow_profile/expected-results')
recursedown('./tests/test_workflow_profile/workflow')
recursedown('./tests/test_workflow_profile/workflow/profiles')
recursedown('./tests/test_workflow_profile/workflow/profiles/default')
recursedown('./tests/test_wrapper')
recursedown('./tests/test_wrapper/expected-results')
recursedown('./tests/test_xrootd')
recursedown('./tests/test_yaml_config')
recursedown('./tests/test_yaml_config/expected-results')
./setup.py: no change
./versioneer.py: no change
./.github/workflows/scripts/sacct-proxy.py: updating
./docs/conf.py: updating
./docs/apidocs/conf.py: updating
./examples/hello-world/scripts/plot-hist.py: no change
./snakemake/__init__.py: no change
./snakemake/__main__.py: no change
./snakemake/_version.py: no change
./snakemake/benchmark.py: no change
./snakemake/checkpoints.py: no change
./snakemake/cwl.py: no change
./snakemake/dag.py: no change
./snakemake/decorators.py: no change
./snakemake/exceptions.py: no change
./snakemake/gui.py: no change
./snakemake/interfaces.py: no change
./snakemake/io.py: no change
./snakemake/jobs.py: no change
./snakemake/logging.py: no change
./snakemake/modules.py: no change
./snakemake/notebook.py: no change
./snakemake/output_index.py: no change
./snakemake/parser.py: no change
./snakemake/path_modifier.py: no change
./snakemake/persistence.py: no change
./snakemake/profiles.py: no change
./snakemake/resources.py: no change
./snakemake/ruleinfo.py: no change
./snakemake/rules.py: no change
./snakemake/scheduler.py: no change
./snakemake/script.py: no change
./snakemake/shell.py: no change
./snakemake/sourcecache.py: no change
./snakemake/stats.py: no change
./snakemake/target_jobs.py: no change
./snakemake/utils.py: no change
./snakemake/workflow.py: no change
./snakemake/wrapper.py: no change
./snakemake/caching/__init__.py: no change
./snakemake/caching/hash.py: no change
./snakemake/caching/local.py: no change
./snakemake/caching/remote.py: no change
./snakemake/common/__init__.py: no change
./snakemake/common/tbdstring.py: no change
./snakemake/deployment/__init__.py: no change
./snakemake/deployment/conda.py: no change
./snakemake/deployment/containerize.py: no change
./snakemake/deployment/env_modules.py: no change
./snakemake/deployment/singularity.py: no change
./snakemake/executors/__init__.py: no change
./snakemake/executors/azure_batch.py: no change
./snakemake/executors/common.py: no change
./snakemake/executors/flux.py: no change
./snakemake/executors/ga4gh_tes.py: no change
./snakemake/executors/google_lifesciences.py: no change
./snakemake/executors/google_lifesciences_helper.py: updating
./snakemake/executors/slurm/__init__.py: no change
./snakemake/executors/slurm/slurm_jobstep.py: no change
./snakemake/executors/slurm/slurm_submit.py: no change
./snakemake/linting/__init__.py: no change
./snakemake/linting/links.py: no change
./snakemake/linting/rules.py: no change
./snakemake/linting/snakefiles.py: no change
./snakemake/remote/AzBlob.py: no change
./snakemake/remote/EGA.py: no change
./snakemake/remote/FTP.py: no change
./snakemake/remote/GS.py: no change
./snakemake/remote/HTTP.py: no change
./snakemake/remote/NCBI.py: no change
./snakemake/remote/S3.py: no change
./snakemake/remote/S3Mocked.py: no change
./snakemake/remote/SFTP.py: no change
./snakemake/remote/XRootD.py: no change
./snakemake/remote/__init__.py: no change
./snakemake/remote/dropbox.py: no change
./snakemake/remote/gfal.py: no change
./snakemake/remote/gridftp.py: no change
./snakemake/remote/iRODS.py: no change
./snakemake/remote/webdav.py: no change
./snakemake/remote/zenodo.py: no change
./snakemake/report/__init__.py: no change
./snakemake/report/rulegraph_spec.py: no change
./snakemake/report/data/__init__.py: no change
./snakemake/report/data/categories.py: no change
./snakemake/report/data/common.py: no change
./snakemake/report/data/packages.py: no change
./snakemake/report/data/results.py: no change
./snakemake/report/data/rulegraph.py: no change
./snakemake/report/data/rules.py: no change
./snakemake/report/data/runtimes.py: no change
./snakemake/report/data/timeline.py: no change
./snakemake/report/template/__init__.py: no change
./snakemake/report/template/components/__init__.py: no change
./snakemake/template_rendering/__init__.py: no change
./snakemake/template_rendering/jinja2.py: no change
./snakemake/template_rendering/yte.py: no change
./snakemake/unit_tests/__init__.py: no change
./snakemake/unit_tests/templates/__init__.py: no change
./tests/__init__.py: no change
./tests/common.py: no change
./tests/conftest.py: no change
./tests/test_azure_batch_executor.py: no change
./tests/test_expand.py: no change
./tests/test_google_lifesciences.py: no change
./tests/test_io.py: no change
./tests/test_kubernetes.py: no change
./tests/test_linting.py: no change
./tests/test_persistence.py: no change
./tests/test_schema.py: no change
./tests/test_script.py: no change
./tests/test_slurm.py: no change
./tests/test_tes.py: no change
./tests/test_tibanna.py: no change
./tests/testapi.py: no change
./tests/tests.py: no change
./tests/test14/qsub.py: updating
./tests/test_benchmark/script.py: updating
./tests/test_conda_python_3_7_script/test_script.py: no change
./tests/test_conda_python_script/test_script.py: no change
./tests/test_filegraph/scripts/vis.py: no change
./tests/test_generate_unit_tests/expected-results/.tests/unit/test_a.py: no change
./tests/test_generate_unit_tests/expected-results/.tests/unit/test_all.py: no change
./tests/test_generate_unit_tests/expected-results/.tests/unit/test_b.py: no change
./tests/test_get_log_both/wrapper.py: no change
./tests/test_get_log_complex/wrapper.py: no change
./tests/test_get_log_none/wrapper.py: no change
./tests/test_get_log_stderr/wrapper.py: no change
./tests/test_get_log_stdout/wrapper.py: no change
./tests/test_github_issue1158/qsub.py: updating
./tests/test_github_issue627/job.py: updating
./tests/test_github_issue_14/local_script.py: no change
./tests/test_github_issue_14/pythonTest.py: updating
./tests/test_handover/script.py: no change
./tests/test_issue1046/my_wrapper/wrapper.py: no change
./tests/test_issue916/local_script.py: no change
./tests/test_issue916/pythonTest.py: updating
./tests/test_job_properties/qsub.py: updating
./tests/test_local_import/bar.py: no change
./tests/test_local_import/foo/__init__.py: no change
./tests/test_paramspace/scripts/simulate.py: no change
./tests/test_paramspace_single_wildcard/scripts/simulate.py: no change
./tests/test_prebuilt_conda_script/test.py: no change
./tests/test_prebuilt_conda_script/dummy_package/src/dummy/__init__.py: no change
./tests/test_prebuilt_conda_script/dummy_package/src/dummy/dummy.py: no change
./tests/test_report_display_code/test.py: no change
./tests/test_restartable_job_cmd_exit_1/qsub.py: updating
./tests/test_restartable_job_qsub_exit_1/qsub.py: updating
./tests/test_script/scripts/test.py: no change
./tests/test_script_py/scripts/test.py: no change
./tests/test_singularity/script.py: no change
./tests/test_singularity_module/script.py: no change
./tests/test_static_remote/S3MockedForStaticTest.py: no change
./tests/test_static_remote/__init__.py: no change
./tests/test_string_resources/qsub.py: updating
./tests/test_tibanna/cleanup.py: no change
./tests/test_tibanna/scripts/step2.py: no change
+ sed -r -i '1{/^#!/d}' snakemake/executors/jobscript.sh snakemake/executors/google_lifesciences_helper.py
+ sed -r -i 's@"python"@"/usr/bin/python3"@g' tests/test_linting.py
+ sed -r -i /sphinxcontrib-napoleon/d docs/requirements.txt
+ echo 'latex_engine = '\''xelatex'\'''
+ for editor in nano vim
+ cp -vp misc/nano/README.md README-nano.md
'misc/nano/README.md' -> 'README-nano.md'
+ for editor in nano vim
+ cp -vp misc/vim/README.md README-vim.md
'misc/vim/README.md' -> 'README-vim.md'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.6DFYB3
+ umask 022
+ cd /builddir/build/BUILD
+ cd snakemake-7.32.3
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/snakemake-7.32.3/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ TMPDIR=/builddir/build/BUILD/snakemake-7.32.3/.pyproject-builddir
+ RPM_TOXENV=py312
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.3/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.3-1.fc40.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt
Handling sphinx >=3 from requirements file docs/requirements.txt
Requirement satisfied: sphinx >=3
(installed: sphinx 7.0.1)
Handling sphinx-argparse from requirements file docs/requirements.txt
Requirement satisfied: sphinx-argparse
(installed: sphinx-argparse 0.4.0)
Handling sphinx_rtd_theme from requirements file docs/requirements.txt
Requirement satisfied: sphinx_rtd_theme
(installed: sphinx_rtd_theme 1.2.2)
Handling docutils from requirements file docs/requirements.txt
Requirement satisfied: docutils
(installed: docutils 0.20.1)
Handling myst-parser from requirements file docs/requirements.txt
Requirement satisfied: myst-parser
(installed: myst-parser 2.0.0)
Handling configargparse from requirements file docs/requirements.txt
Requirement satisfied: configargparse
(installed: configargparse 1.5.5)
Handling appdirs from requirements file docs/requirements.txt
Requirement satisfied: appdirs
(installed: appdirs 1.4.4)
Handling setuptools>=42 from build-system.requires
Requirement satisfied: setuptools>=42
(installed: setuptools 67.7.2)
Handling tomli; python_version < "3.11" from build-system.requires
Ignoring alien requirement: tomli; python_version < "3.11"
running egg_info
creating snakemake.egg-info
writing snakemake.egg-info/PKG-INFO
writing dependency_links to snakemake.egg-info/dependency_links.txt
writing entry points to snakemake.egg-info/entry_points.txt
writing requirements to snakemake.egg-info/requires.txt
writing top-level names to snakemake.egg-info/top_level.txt
writing manifest file 'snakemake.egg-info/SOURCES.txt'
reading manifest file 'snakemake.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.md'
adding license file 'AUTHORS.rst'
writing manifest file 'snakemake.egg-info/SOURCES.txt'
Handling wheel from get_requires_for_build_wheel
Requirement satisfied: wheel
(installed: wheel 0.41.1)
running dist_info
writing snakemake.egg-info/PKG-INFO
writing dependency_links to snakemake.egg-info/dependency_links.txt
writing entry points to snakemake.egg-info/entry_points.txt
writing requirements to snakemake.egg-info/requires.txt
writing top-level names to snakemake.egg-info/top_level.txt
reading manifest file 'snakemake.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.md'
adding license file 'AUTHORS.rst'
writing manifest file 'snakemake.egg-info/SOURCES.txt'
creating '/builddir/build/BUILD/snakemake-7.32.3/snakemake-7.32.3.dist-info'
Handling appdirs from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: appdirs
(installed: appdirs 1.4.4)
Handling configargparse from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: configargparse
(installed: configargparse 1.5.5)
Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: connection-pool >=0.0.3
Handling datrie from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: datrie
Handling docutils from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: docutils
(installed: docutils 0.20.1)
Handling gitpython from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: gitpython
Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: humanfriendly
Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: jinja2 <4.0,>=3.0
(installed: jinja2 3.1.2)
Handling jsonschema from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: jsonschema
Handling nbformat from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: nbformat
Handling packaging from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: packaging
(installed: packaging 23.1)
Handling psutil from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: psutil
Handling pulp >=2.0 from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: pulp >=2.0
Handling pyyaml from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: pyyaml
(installed: pyyaml 6.0.1)
Handling requests from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: requests
(installed: requests 2.28.2)
Handling reretry from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: reretry
Handling smart-open >=3.0 from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: smart-open >=3.0
Handling stopit from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: stopit
Handling tabulate from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: tabulate
Handling throttler from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: throttler
Handling toposort >=1.10 from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: toposort >=1.10
Handling wrapt from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: wrapt
Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: yte <2.0,>=1.5.1
Handling azure-storage-blob ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: azure-storage-blob ; extra == 'azure'
Handling azure-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: azure-batch ; extra == 'azure'
Handling azure-core ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: azure-core ; extra == 'azure'
Handling azure-identity ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: azure-identity ; extra == 'azure'
Handling azure-mgmt-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: azure-mgmt-batch ; extra == 'azure'
Handling google-api-python-client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: google-api-python-client ; extra == 'google-cloud'
Handling google-cloud-storage ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: google-cloud-storage ; extra == 'google-cloud'
Handling google-crc32c ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: google-crc32c ; extra == 'google-cloud'
Handling oauth2client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: oauth2client ; extra == 'google-cloud'
Handling slacker ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake)
Requirement not satisfied: slacker ; extra == 'messaging'
Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake)
Ignoring alien requirement: eido ; extra == 'pep'
Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake)
Ignoring alien requirement: peppy ; extra == 'pep'
Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: pygments ; extra == 'reports'
(installed: pygments 2.15.1)
+ cat /builddir/build/BUILD/snakemake-7.32.3-1.fc40.x86_64-pyproject-buildrequires
+ rm -rfv snakemake-7.32.3.dist-info/
removed 'snakemake-7.32.3.dist-info/AUTHORS.rst'
removed 'snakemake-7.32.3.dist-info/LICENSE.md'
removed 'snakemake-7.32.3.dist-info/METADATA'
removed 'snakemake-7.32.3.dist-info/entry_points.txt'
removed 'snakemake-7.32.3.dist-info/top_level.txt'
removed directory 'snakemake-7.32.3.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/snakemake-7.32.3-1.fc40.buildreqs.nosrc.rpm
INFO: Going to install missing dynamic buildrequires
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 42 kB/s | 1.5 kB 00:00
Copr repository 21 MB/s | 3.9 MB 00:00
fedora 705 kB/s | 22 kB 00:00
fedora 3.0 MB/s | 4.8 MB 00:01
Package python3-jinja2-3.1.2-5.fc40.noarch is already installed.
Package librsvg2-tools-2.56.90-9.fc39.x86_64 is already installed.
Package texlive-xindy-11:svn65958-77.fc39.x86_64 is already installed.
Package help2man-1.49.3-3.fc39.noarch is already installed.
Package latexmk-4.80-2.fc39.noarch is already installed.
Package make-1:4.4.1-2.fc39.x86_64 is already installed.
Package pyproject-rpm-macros-1.9.0-2.fc40.noarch is already installed.
Package python3-devel-3.12.0~rc1-1.fc40.x86_64 is already installed.
Package python3-devel-3.12.0~rc1-1.fc40.x86_64 is already installed.
Package python3-sphinx-latex-1:7.0.1-1.fc40.noarch is already installed.
Package python3-appdirs-1.4.4-11.fc40.noarch is already installed.
Package python3-boto3-1.28.25-1.fc40.noarch is already installed.
Package python3-configargparse-1.5.5-2.fc39.noarch is already installed.
Package python3-configargparse-1.5.5-2.fc39.noarch is already installed.
Package python3-docutils-0.20.1-1.fc40.noarch is already installed.
Package python3-myst-parser-2.0.0-2.fc39.noarch is already installed.
Package python3-packaging-23.1-4.fc39.noarch is already installed.
Package python3-pandas-1.5.3-7.fc39~bootstrap.x86_64 is already installed.
Package python3-pip-23.2.1-1.fc40.noarch is already installed.
Package python3-pygments-2.15.1-4.fc40.noarch is already installed.
Package python3-pytest-7.3.2-4.fc40.noarch is already installed.
Package python3-pyyaml-6.0.1-12.fc40.x86_64 is already installed.
Package python3-requests-2.28.2-5.fc40.noarch is already installed.
Package python3-requests-mock-1.10.0-5.fc40.noarch is already installed.
Package python3-setuptools-67.7.2-5.fc39.noarch is already installed.
Package python3-sphinx-1:7.0.1-1.fc40.noarch is already installed.
Package python3-sphinx-argparse-0.4.0-4.fc39.noarch is already installed.
Package python3-sphinx_rtd_theme-1.2.2-1.fc40.noarch is already installed.
Package python3-wheel-1:0.41.1-1.fc40.noarch is already installed.
Package texlive-xetex-11:svn66203-77.fc39.x86_64 is already installed.
Package vim-filesystem-2:9.0.1677-3.fc39.noarch is already installed.
Dependencies resolved.
============================================================================================
Package Arch Version Repo Size
============================================================================================
Installing:
python3-GitPython noarch 3.1.31-3.fc40 copr_base 354 k
python3-azure-batch noarch 14.0.0-1.fc40 copr_base 207 k
python3-azure-core noarch 2:1.28.0-4.fc40 copr_base 261 k
python3-azure-identity noarch 1:1.10.0-9.fc39 fedora 220 k
python3-azure-mgmt-batch noarch 17.0.0-5.fc40 copr_base 195 k
python3-azure-storage-blob noarch 12.14.1-4.fc40 copr_base 509 k
python3-connection_pool noarch 0.0.3-9.fc39 fedora 17 k
python3-datrie x86_64 0.8.2-10.fc39 fedora 158 k
python3-google-api-client noarch 2:2.93.0-2.fc40 copr_base 4.2 M
python3-google-cloud-storage noarch 2.10.0-4.fc40 copr_base 179 k
python3-google-crc32c x86_64 1.1.2-9.fc40 copr_base 32 k
python3-humanfriendly noarch 10.0-8.fc39 fedora 141 k
python3-jsonschema noarch 4.17.3-5.fc39 fedora 197 k
python3-nbformat noarch 5.9.1-2.fc39 fedora 143 k
python3-oauth2client noarch 4.1.3-23.fc39 fedora 184 k
python3-psutil x86_64 5.9.5-1.fc39 fedora 267 k
python3-pulp noarch 2.7.0-3.fc40 copr_base 195 k
python3-reretry noarch 0.11.8-5.fc40 copr_base 18 k
python3-slacker noarch 0.14.0-12.fc40 copr_base 36 k
python3-smart_open noarch 6.3.0-5.fc40 copr_base 106 k
python3-stopit noarch 1.1.2-8.fc39 fedora 29 k
python3-tabulate noarch 0.9.0-4.fc40 copr_base 69 k
python3-throttler noarch 1.2.2-6.fc40 copr_base 22 k
python3-toposort noarch 1.10-3.fc40 copr_base 20 k
python3-wrapt x86_64 1.14.1-5.fc39 fedora 68 k
python3-yte noarch 1.5.1-5.fc39 fedora 35 k
Upgrading:
vim-filesystem noarch 2:9.0.1712-1.fc40 fedora 18 k
Installing dependencies:
abseil-cpp x86_64 20230125.3-2.fc39 fedora 661 k
c-ares x86_64 1.19.1-1.fc39 fedora 111 k
git-core x86_64 2.41.0-2.fc39 fedora 4.4 M
google-crc32c x86_64 1.1.2-7.fc39 fedora 22 k
grpc-data noarch 1.48.4-24.fc39 fedora 25 k
less x86_64 633-2.fc39 fedora 175 k
libcbor x86_64 0.10.2-2.fc39 fedora 58 k
libedit x86_64 3.1-47.20221030cvs.fc39 fedora 107 k
libfido2 x86_64 1.13.0-3.fc39 fedora 98 k
openssh x86_64 9.3p1-9.fc40 fedora 438 k
openssh-clients x86_64 9.3p1-9.fc40 fedora 734 k
protobuf x86_64 3.19.6-6.fc40 copr_base 1.0 M
python3-adal noarch 1.2.7-13.fc40 copr_base 94 k
python3-attrs noarch 23.1.0-4.fc39 fedora 123 k
python3-azure-common noarch 1:1.1.28-6.fc40 copr_base 33 k
python3-azure-mgmt-core noarch 1:1.3.2-9.fc40 copr_base 39 k
python3-boto noarch 2.49.0-18.fc39 fedora 1.8 M
python3-cachetools noarch 5.3.1-4.fc39 fedora 37 k
python3-certifi noarch 2023.05.07-2.fc40 copr_base 15 k
python3-cffi x86_64 1.15.1-6.fc39 fedora 307 k
python3-cryptography x86_64 41.0.3-2.fc40 fedora 1.2 M
python3-dpath noarch 2.1.4-3.fc39 fedora 43 k
python3-fasteners noarch 0.18-9.fc40 copr_base 44 k
python3-fastjsonschema noarch 2.16.3-3.fc40 copr_base 57 k
python3-gitdb noarch 4.0.10-3.fc40 copr_base 129 k
python3-google-api-core noarch 1:2.11.1-5.fc40 copr_base 178 k
python3-google-auth noarch 1:2.22.0-2.fc39 fedora 267 k
python3-google-auth-httplib2 noarch 0.1.0-8.fc40 copr_base 21 k
python3-google-cloud-core noarch 2.3.3-2.fc40 copr_base 64 k
python3-google-resumable-media noarch 2.5.0-4.fc40 copr_base 84 k
python3-googleapis-common-protos noarch 1.60.0-2.fc40 copr_base 186 k
python3-grpcio x86_64 1.48.4-24.fc39 fedora 2.2 M
python3-grpcio-status noarch 1.48.4-24.fc39 fedora 24 k
python3-httplib2 noarch 0.21.0-4.fc39 fedora 139 k
python3-isodate noarch 0.6.1-9.fc40 copr_base 67 k
python3-jupyter-core noarch 5.1.0-5.fc39 fedora 141 k
python3-jwt noarch 2.6.0-4.fc40 copr_base 54 k
python3-jwt+crypto noarch 2.6.0-4.fc40 copr_base 9.4 k
python3-msal noarch 1.24.0~b1-9.fc40 copr_base 155 k
python3-msal-extensions noarch 1.0.0-7.fc40 copr_base 42 k
python3-msrest noarch 0.7.1-8.20230725git2d8fd04.fc40 copr_base 138 k
python3-msrestazure noarch 0.6.4-18.fc40 copr_base 71 k
python3-oauthlib noarch 3.2.1-6.fc40 copr_base 208 k
python3-plac noarch 1.3.5-12.fc40 copr_base 60 k
python3-platformdirs noarch 3.9.1-2.fc39 fedora 45 k
python3-ply noarch 3.11-20.fc39 fedora 135 k
python3-portalocker noarch 2.7.0-5.fc40 copr_base 40 k
python3-protobuf x86_64 3.19.6-6.fc40 copr_base 390 k
python3-pyOpenSSL noarch 23.2.0-1.fc40 fedora 126 k
python3-pyasn1 noarch 0.4.8-16.fc39 fedora 188 k
python3-pyasn1-modules noarch 0.4.8-16.fc39 fedora 318 k
python3-pycparser noarch 2.20-11.fc39 fedora 153 k
python3-pyparsing noarch 3.0.9-11.fc39 fedora 254 k
python3-pyrsistent x86_64 0.19.3-10.fc40 copr_base 126 k
python3-requests-oauthlib noarch 1.3.1-6.fc39 fedora 57 k
python3-rsa noarch 4.9-3.fc39 fedora 81 k
python3-smmap noarch 5.0.0-6.fc40 copr_base 56 k
python3-traitlets noarch 5.9.0-3.fc39 fedora 312 k
python3-typing-extensions noarch 4.7.1-2.fc40 copr_base 79 k
python3-uritemplate noarch 4.1.1-6.fc39 fedora 40 k
python3-zombie-imp noarch 0.0.2-2.fc40 copr_base 29 k
re2 x86_64 1:20220601-3.fc39 fedora 200 k
Transaction Summary
============================================================================================
Install 88 Packages
Upgrade 1 Package
Total size: 26 M
Total download size: 26 M
Downloading Packages:
[SKIPPED] python3-fasteners-0.18-9.fc40.noarch.rpm: Already downloaded
[SKIPPED] python3-typing-extensions-4.7.1-2.fc40.noarch.rpm: Already downloaded
[SKIPPED] libedit-3.1-47.20221030cvs.fc39.x86_64.rpm: Already downloaded
[SKIPPED] python3-cachetools-5.3.1-4.fc39.noarch.rpm: Already downloaded
[SKIPPED] python3-platformdirs-3.9.1-2.fc39.noarch.rpm: Already downloaded
(6/89): python3-adal-1.2.7-13.fc40.noarch.rpm 1.2 MB/s | 94 kB 00:00
(7/89): python3-GitPython-3.1.31-3.fc40.noarch. 3.4 MB/s | 354 kB 00:00
(8/89): protobuf-3.19.6-6.fc40.x86_64.rpm 8.3 MB/s | 1.0 MB 00:00
(9/89): python3-azure-common-1.1.28-6.fc40.noar 1.8 MB/s | 33 kB 00:00
(10/89): python3-azure-core-1.28.0-4.fc40.noarc 15 MB/s | 261 kB 00:00
(11/89): python3-azure-mgmt-core-1.3.2-9.fc40.n 3.8 MB/s | 39 kB 00:00
(12/89): python3-azure-storage-blob-12.14.1-4.f 19 MB/s | 509 kB 00:00
(13/89): python3-certifi-2023.05.07-2.fc40.noar 1.0 MB/s | 15 kB 00:00
(14/89): python3-azure-mgmt-batch-17.0.0-5.fc40 2.4 MB/s | 195 kB 00:00
(15/89): python3-fastjsonschema-2.16.3-3.fc40.n 3.9 MB/s | 57 kB 00:00
(16/89): python3-gitdb-4.0.10-3.fc40.noarch.rpm 10 MB/s | 129 kB 00:00
(17/89): python3-google-api-core-2.11.1-5.fc40. 13 MB/s | 178 kB 00:00
(18/89): python3-azure-batch-14.0.0-1.fc40.noar 1.3 MB/s | 207 kB 00:00
(19/89): python3-google-auth-httplib2-0.1.0-8.f 1.3 MB/s | 21 kB 00:00
(20/89): python3-google-cloud-core-2.3.3-2.fc40 4.7 MB/s | 64 kB 00:00
(21/89): python3-google-cloud-storage-2.10.0-4. 11 MB/s | 179 kB 00:00
(22/89): python3-google-crc32c-1.1.2-9.fc40.x86 2.2 MB/s | 32 kB 00:00
(23/89): python3-google-resumable-media-2.5.0-4 5.3 MB/s | 84 kB 00:00
(24/89): python3-googleapis-common-protos-1.60. 12 MB/s | 186 kB 00:00
(25/89): python3-isodate-0.6.1-9.fc40.noarch.rp 6.3 MB/s | 67 kB 00:00
(26/89): python3-jwt+crypto-2.6.0-4.fc40.noarch 824 kB/s | 9.4 kB 00:00
(27/89): python3-jwt-2.6.0-4.fc40.noarch.rpm 4.2 MB/s | 54 kB 00:00
(28/89): python3-msal-1.24.0~b1-9.fc40.noarch.r 1.6 MB/s | 155 kB 00:00
(29/89): python3-msal-extensions-1.0.0-7.fc40.n 467 kB/s | 42 kB 00:00
(30/89): python3-msrest-0.7.1-8.20230725git2d8f 1.7 MB/s | 138 kB 00:00
(31/89): python3-google-api-client-2.93.0-2.fc4 15 MB/s | 4.2 MB 00:00
(32/89): python3-msrestazure-0.6.4-18.fc40.noar 828 kB/s | 71 kB 00:00
(33/89): python3-oauthlib-3.2.1-6.fc40.noarch.r 16 MB/s | 208 kB 00:00
(34/89): python3-protobuf-3.19.6-6.fc40.x86_64. 24 MB/s | 390 kB 00:00
(35/89): python3-plac-1.3.5-12.fc40.noarch.rpm 1.1 MB/s | 60 kB 00:00
(36/89): python3-portalocker-2.7.0-5.fc40.noarc 736 kB/s | 40 kB 00:00
(37/89): python3-pulp-2.7.0-3.fc40.noarch.rpm 4.6 MB/s | 195 kB 00:00
(38/89): python3-pyrsistent-0.19.3-10.fc40.x86_ 7.8 MB/s | 126 kB 00:00
(39/89): python3-smart_open-6.3.0-5.fc40.noarch 4.0 MB/s | 106 kB 00:00
(40/89): python3-reretry-0.11.8-5.fc40.noarch.r 447 kB/s | 18 kB 00:00
(41/89): python3-slacker-0.14.0-12.fc40.noarch. 1.0 MB/s | 36 kB 00:00
(42/89): python3-smmap-5.0.0-6.fc40.noarch.rpm 3.5 MB/s | 56 kB 00:00
(43/89): python3-throttler-1.2.2-6.fc40.noarch. 469 kB/s | 22 kB 00:00
(44/89): python3-toposort-1.10-3.fc40.noarch.rp 436 kB/s | 20 kB 00:00
(45/89): python3-tabulate-0.9.0-4.fc40.noarch.r 1.0 MB/s | 69 kB 00:00
(46/89): python3-zombie-imp-0.0.2-2.fc40.noarch 1.7 MB/s | 29 kB 00:00
(47/89): c-ares-1.19.1-1.fc39.x86_64.rpm 1.2 MB/s | 111 kB 00:00
(48/89): google-crc32c-1.1.2-7.fc39.x86_64.rpm 1.1 MB/s | 22 kB 00:00
(49/89): abseil-cpp-20230125.3-2.fc39.x86_64.rp 4.8 MB/s | 661 kB 00:00
(50/89): grpc-data-1.48.4-24.fc39.noarch.rpm 1.3 MB/s | 25 kB 00:00
(51/89): less-633-2.fc39.x86_64.rpm 8.1 MB/s | 175 kB 00:00
(52/89): libcbor-0.10.2-2.fc39.x86_64.rpm 2.6 MB/s | 58 kB 00:00
(53/89): libfido2-1.13.0-3.fc39.x86_64.rpm 4.7 MB/s | 98 kB 00:00
[MIRROR] openssh-9.3p1-9.fc40.x86_64.rpm: Status code: 404 for http://mirror.siena.edu/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/o/openssh-9.3p1-9.fc40.x86_64.rpm (IP: 199.223.246.113)
[MIRROR] openssh-clients-9.3p1-9.fc40.x86_64.rpm: Status code: 404 for http://mirror.siena.edu/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/o/openssh-clients-9.3p1-9.fc40.x86_64.rpm (IP: 199.223.246.113)
(54/89): git-core-2.41.0-2.fc39.x86_64.rpm 23 MB/s | 4.4 MB 00:00
[MIRROR] openssh-9.3p1-9.fc40.x86_64.rpm: Status code: 404 for https://ix-denver.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/o/openssh-9.3p1-9.fc40.x86_64.rpm (IP: 2607:dc0::11)
[MIRROR] openssh-clients-9.3p1-9.fc40.x86_64.rpm: Status code: 404 for https://ix-denver.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/o/openssh-clients-9.3p1-9.fc40.x86_64.rpm (IP: 2607:dc0::11)
[MIRROR] openssh-9.3p1-9.fc40.x86_64.rpm: Status code: 404 for http://ix-denver.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/o/openssh-9.3p1-9.fc40.x86_64.rpm (IP: 2607:dc0::11)
[MIRROR] openssh-clients-9.3p1-9.fc40.x86_64.rpm: Status code: 404 for http://ix-denver.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/o/openssh-clients-9.3p1-9.fc40.x86_64.rpm (IP: 2607:dc0::11)
(55/89): python3-attrs-23.1.0-4.fc39.noarch.rpm 424 kB/s | 123 kB 00:00
[MIRROR] openssh-clients-9.3p1-9.fc40.x86_64.rpm: Status code: 404 for https://mirrors.ocf.berkeley.edu/fedora/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/o/openssh-clients-9.3p1-9.fc40.x86_64.rpm (IP: 2607:f140:0:32::70)
[MIRROR] openssh-9.3p1-9.fc40.x86_64.rpm: Status code: 404 for https://mirrors.ocf.berkeley.edu/fedora/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/o/openssh-9.3p1-9.fc40.x86_64.rpm (IP: 2607:f140:0:32::70)
(56/89): python3-azure-identity-1.10.0-9.fc39.n 994 kB/s | 220 kB 00:00
[MIRROR] openssh-clients-9.3p1-9.fc40.x86_64.rpm: Status code: 404 for http://mirrors.ocf.berkeley.edu/fedora/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/o/openssh-clients-9.3p1-9.fc40.x86_64.rpm (IP: 2607:f140:0:32::70)
[MIRROR] openssh-9.3p1-9.fc40.x86_64.rpm: Status code: 404 for http://mirrors.ocf.berkeley.edu/fedora/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/o/openssh-9.3p1-9.fc40.x86_64.rpm (IP: 2607:f140:0:32::70)
(57/89): python3-boto-2.49.0-18.fc39.noarch.rpm 8.2 MB/s | 1.8 MB 00:00
[MIRROR] openssh-clients-9.3p1-9.fc40.x86_64.rpm: Status code: 404 for https://volico.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/o/openssh-clients-9.3p1-9.fc40.x86_64.rpm (IP: 208.68.237.5)
[MIRROR] openssh-9.3p1-9.fc40.x86_64.rpm: Status code: 404 for https://volico.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/o/openssh-9.3p1-9.fc40.x86_64.rpm (IP: 208.68.237.5)
(58/89): python3-cffi-1.15.1-6.fc39.x86_64.rpm 5.4 MB/s | 307 kB 00:00
[MIRROR] openssh-9.3p1-9.fc40.x86_64.rpm: Status code: 404 for http://volico.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/o/openssh-9.3p1-9.fc40.x86_64.rpm (IP: 208.68.237.5)
[MIRROR] openssh-clients-9.3p1-9.fc40.x86_64.rpm: Status code: 404 for http://volico.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/o/openssh-clients-9.3p1-9.fc40.x86_64.rpm (IP: 208.68.237.5)
(59/89): python3-connection_pool-0.0.3-9.fc39.n 272 kB/s | 17 kB 00:00
[MIRROR] python3-cryptography-41.0.3-2.fc40.x86_64.rpm: Status code: 404 for https://ix-denver.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/p/python3-cryptography-41.0.3-2.fc40.x86_64.rpm (IP: 2607:dc0::11)
[MIRROR] python3-cryptography-41.0.3-2.fc40.x86_64.rpm: Status code: 404 for http://mirror.siena.edu/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/p/python3-cryptography-41.0.3-2.fc40.x86_64.rpm (IP: 199.223.246.113)
[MIRROR] python3-cryptography-41.0.3-2.fc40.x86_64.rpm: Status code: 404 for http://ix-denver.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/p/python3-cryptography-41.0.3-2.fc40.x86_64.rpm (IP: 23.144.216.11)
[MIRROR] openssh-9.3p1-9.fc40.x86_64.rpm: Status code: 404 for http://mirror.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/o/openssh-9.3p1-9.fc40.x86_64.rpm (IP: 2620:13b:0:1000::16)
[MIRROR] openssh-clients-9.3p1-9.fc40.x86_64.rpm: Status code: 404 for http://mirror.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/o/openssh-clients-9.3p1-9.fc40.x86_64.rpm (IP: 2620:13b:0:1000::16)
[MIRROR] python3-cryptography-41.0.3-2.fc40.x86_64.rpm: Status code: 404 for https://mirrors.ocf.berkeley.edu/fedora/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/p/python3-cryptography-41.0.3-2.fc40.x86_64.rpm (IP: 2607:f140:0:32::70)
[MIRROR] python3-cryptography-41.0.3-2.fc40.x86_64.rpm: Status code: 404 for http://mirrors.ocf.berkeley.edu/fedora/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/p/python3-cryptography-41.0.3-2.fc40.x86_64.rpm (IP: 2607:f140:0:32::70)
[MIRROR] python3-cryptography-41.0.3-2.fc40.x86_64.rpm: Status code: 404 for https://volico.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/p/python3-cryptography-41.0.3-2.fc40.x86_64.rpm (IP: 208.68.237.5)
[MIRROR] python3-cryptography-41.0.3-2.fc40.x86_64.rpm: Status code: 404 for http://volico.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/p/python3-cryptography-41.0.3-2.fc40.x86_64.rpm (IP: 208.68.237.5)
[MIRROR] openssh-clients-9.3p1-9.fc40.x86_64.rpm: Status code: 404 for https://mirror.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/o/openssh-clients-9.3p1-9.fc40.x86_64.rpm (IP: 2620:13b:0:1000::16)
[MIRROR] python3-cryptography-41.0.3-2.fc40.x86_64.rpm: Status code: 404 for http://mirror.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/p/python3-cryptography-41.0.3-2.fc40.x86_64.rpm (IP: 2620:13b:0:1000::16)
[MIRROR] python3-cryptography-41.0.3-2.fc40.x86_64.rpm: Status code: 404 for https://mirror.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/p/python3-cryptography-41.0.3-2.fc40.x86_64.rpm (IP: 2620:13b:0:1000::16)
[MIRROR] openssh-clients-9.3p1-9.fc40.x86_64.rpm: Status code: 404 for http://ziply.mm.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/o/openssh-clients-9.3p1-9.fc40.x86_64.rpm (IP: 2605:21c0:1000:4a::53)
[MIRROR] openssh-9.3p1-9.fc40.x86_64.rpm: Status code: 404 for https://mirror.fcix.net/fedora/linux/development/rawhide/Everything/x86_64/os/Packages/o/openssh-9.3p1-9.fc40.x86_64.rpm (IP: 23.152.160.16)
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Installing : python3-azure-batch-14.0.0-1.fc40.noarch 68/90
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Installing : python3-azure-storage-blob-12.14.1-4.fc40.noarch 70/90
Installing : python3-oauth2client-4.1.3-23.fc39.noarch 71/90
Installing : python3-nbformat-5.9.1-2.fc39.noarch 72/90
Installing : python3-yte-1.5.1-5.fc39.noarch 73/90
Installing : python3-azure-identity-1:1.10.0-9.fc39.noarch 74/90
Installing : python3-GitPython-3.1.31-3.fc40.noarch 75/90
Installing : python3-smart_open-6.3.0-5.fc40.noarch 76/90
Upgrading : vim-filesystem-2:9.0.1712-1.fc40.noarch 77/90
Installing : python3-wrapt-1.14.1-5.fc39.x86_64 78/90
Installing : python3-stopit-1.1.2-8.fc39.noarch 79/90
Installing : python3-psutil-5.9.5-1.fc39.x86_64 80/90
Installing : python3-humanfriendly-10.0-8.fc39.noarch 81/90
Installing : python3-datrie-0.8.2-10.fc39.x86_64 82/90
Installing : python3-connection_pool-0.0.3-9.fc39.noarch 83/90
Installing : python3-toposort-1.10-3.fc40.noarch 84/90
Installing : python3-throttler-1.2.2-6.fc40.noarch 85/90
Installing : python3-tabulate-0.9.0-4.fc40.noarch 86/90
Installing : python3-slacker-0.14.0-12.fc40.noarch 87/90
Installing : python3-reretry-0.11.8-5.fc40.noarch 88/90
Installing : python3-pulp-2.7.0-3.fc40.noarch 89/90
Cleanup : vim-filesystem-2:9.0.1677-3.fc39.noarch 90/90
Running scriptlet: vim-filesystem-2:9.0.1677-3.fc39.noarch 90/90
Verifying : protobuf-3.19.6-6.fc40.x86_64 1/90
Verifying : python3-GitPython-3.1.31-3.fc40.noarch 2/90
Verifying : python3-adal-1.2.7-13.fc40.noarch 3/90
Verifying : python3-azure-batch-14.0.0-1.fc40.noarch 4/90
Verifying : python3-azure-common-1:1.1.28-6.fc40.noarch 5/90
Verifying : python3-azure-core-2:1.28.0-4.fc40.noarch 6/90
Verifying : python3-azure-mgmt-batch-17.0.0-5.fc40.noarch 7/90
Verifying : python3-azure-mgmt-core-1:1.3.2-9.fc40.noarch 8/90
Verifying : python3-azure-storage-blob-12.14.1-4.fc40.noarch 9/90
Verifying : python3-certifi-2023.05.07-2.fc40.noarch 10/90
Verifying : python3-fasteners-0.18-9.fc40.noarch 11/90
Verifying : python3-fastjsonschema-2.16.3-3.fc40.noarch 12/90
Verifying : python3-gitdb-4.0.10-3.fc40.noarch 13/90
Verifying : python3-google-api-client-2:2.93.0-2.fc40.noarch 14/90
Verifying : python3-google-api-core-1:2.11.1-5.fc40.noarch 15/90
Verifying : python3-google-auth-httplib2-0.1.0-8.fc40.noarch 16/90
Verifying : python3-google-cloud-core-2.3.3-2.fc40.noarch 17/90
Verifying : python3-google-cloud-storage-2.10.0-4.fc40.noarch 18/90
Verifying : python3-google-crc32c-1.1.2-9.fc40.x86_64 19/90
Verifying : python3-google-resumable-media-2.5.0-4.fc40.noarch 20/90
Verifying : python3-googleapis-common-protos-1.60.0-2.fc40.noa 21/90
Verifying : python3-isodate-0.6.1-9.fc40.noarch 22/90
Verifying : python3-jwt+crypto-2.6.0-4.fc40.noarch 23/90
Verifying : python3-jwt-2.6.0-4.fc40.noarch 24/90
Verifying : python3-msal-1.24.0~b1-9.fc40.noarch 25/90
Verifying : python3-msal-extensions-1.0.0-7.fc40.noarch 26/90
Verifying : python3-msrest-0.7.1-8.20230725git2d8fd04.fc40.noa 27/90
Verifying : python3-msrestazure-0.6.4-18.fc40.noarch 28/90
Verifying : python3-oauthlib-3.2.1-6.fc40.noarch 29/90
Verifying : python3-plac-1.3.5-12.fc40.noarch 30/90
Verifying : python3-portalocker-2.7.0-5.fc40.noarch 31/90
Verifying : python3-protobuf-3.19.6-6.fc40.x86_64 32/90
Verifying : python3-pulp-2.7.0-3.fc40.noarch 33/90
Verifying : python3-pyrsistent-0.19.3-10.fc40.x86_64 34/90
Verifying : python3-reretry-0.11.8-5.fc40.noarch 35/90
Verifying : python3-slacker-0.14.0-12.fc40.noarch 36/90
Verifying : python3-smart_open-6.3.0-5.fc40.noarch 37/90
Verifying : python3-smmap-5.0.0-6.fc40.noarch 38/90
Verifying : python3-tabulate-0.9.0-4.fc40.noarch 39/90
Verifying : python3-throttler-1.2.2-6.fc40.noarch 40/90
Verifying : python3-toposort-1.10-3.fc40.noarch 41/90
Verifying : python3-typing-extensions-4.7.1-2.fc40.noarch 42/90
Verifying : python3-zombie-imp-0.0.2-2.fc40.noarch 43/90
Verifying : abseil-cpp-20230125.3-2.fc39.x86_64 44/90
Verifying : c-ares-1.19.1-1.fc39.x86_64 45/90
Verifying : git-core-2.41.0-2.fc39.x86_64 46/90
Verifying : google-crc32c-1.1.2-7.fc39.x86_64 47/90
Verifying : grpc-data-1.48.4-24.fc39.noarch 48/90
Verifying : less-633-2.fc39.x86_64 49/90
Verifying : libcbor-0.10.2-2.fc39.x86_64 50/90
Verifying : libedit-3.1-47.20221030cvs.fc39.x86_64 51/90
Verifying : libfido2-1.13.0-3.fc39.x86_64 52/90
Verifying : openssh-9.3p1-9.fc40.x86_64 53/90
Verifying : openssh-clients-9.3p1-9.fc40.x86_64 54/90
Verifying : python3-attrs-23.1.0-4.fc39.noarch 55/90
Verifying : python3-azure-identity-1:1.10.0-9.fc39.noarch 56/90
Verifying : python3-boto-2.49.0-18.fc39.noarch 57/90
Verifying : python3-cachetools-5.3.1-4.fc39.noarch 58/90
Verifying : python3-cffi-1.15.1-6.fc39.x86_64 59/90
Verifying : python3-connection_pool-0.0.3-9.fc39.noarch 60/90
Verifying : python3-cryptography-41.0.3-2.fc40.x86_64 61/90
Verifying : python3-datrie-0.8.2-10.fc39.x86_64 62/90
Verifying : python3-dpath-2.1.4-3.fc39.noarch 63/90
Verifying : python3-google-auth-1:2.22.0-2.fc39.noarch 64/90
Verifying : python3-grpcio-1.48.4-24.fc39.x86_64 65/90
Verifying : python3-grpcio-status-1.48.4-24.fc39.noarch 66/90
Verifying : python3-httplib2-0.21.0-4.fc39.noarch 67/90
Verifying : python3-humanfriendly-10.0-8.fc39.noarch 68/90
Verifying : python3-jsonschema-4.17.3-5.fc39.noarch 69/90
Verifying : python3-jupyter-core-5.1.0-5.fc39.noarch 70/90
Verifying : python3-nbformat-5.9.1-2.fc39.noarch 71/90
Verifying : python3-oauth2client-4.1.3-23.fc39.noarch 72/90
Verifying : python3-platformdirs-3.9.1-2.fc39.noarch 73/90
Verifying : python3-ply-3.11-20.fc39.noarch 74/90
Verifying : python3-psutil-5.9.5-1.fc39.x86_64 75/90
Verifying : python3-pyOpenSSL-23.2.0-1.fc40.noarch 76/90
Verifying : python3-pyasn1-0.4.8-16.fc39.noarch 77/90
Verifying : python3-pyasn1-modules-0.4.8-16.fc39.noarch 78/90
Verifying : python3-pycparser-2.20-11.fc39.noarch 79/90
Verifying : python3-pyparsing-3.0.9-11.fc39.noarch 80/90
Verifying : python3-requests-oauthlib-1.3.1-6.fc39.noarch 81/90
Verifying : python3-rsa-4.9-3.fc39.noarch 82/90
Verifying : python3-stopit-1.1.2-8.fc39.noarch 83/90
Verifying : python3-traitlets-5.9.0-3.fc39.noarch 84/90
Verifying : python3-uritemplate-4.1.1-6.fc39.noarch 85/90
Verifying : python3-wrapt-1.14.1-5.fc39.x86_64 86/90
Verifying : python3-yte-1.5.1-5.fc39.noarch 87/90
Verifying : re2-1:20220601-3.fc39.x86_64 88/90
Verifying : vim-filesystem-2:9.0.1712-1.fc40.noarch 89/90
Verifying : vim-filesystem-2:9.0.1677-3.fc39.noarch 90/90
Upgraded:
vim-filesystem-2:9.0.1712-1.fc40.noarch
Installed:
abseil-cpp-20230125.3-2.fc39.x86_64
c-ares-1.19.1-1.fc39.x86_64
git-core-2.41.0-2.fc39.x86_64
google-crc32c-1.1.2-7.fc39.x86_64
grpc-data-1.48.4-24.fc39.noarch
less-633-2.fc39.x86_64
libcbor-0.10.2-2.fc39.x86_64
libedit-3.1-47.20221030cvs.fc39.x86_64
libfido2-1.13.0-3.fc39.x86_64
openssh-9.3p1-9.fc40.x86_64
openssh-clients-9.3p1-9.fc40.x86_64
protobuf-3.19.6-6.fc40.x86_64
python3-GitPython-3.1.31-3.fc40.noarch
python3-adal-1.2.7-13.fc40.noarch
python3-attrs-23.1.0-4.fc39.noarch
python3-azure-batch-14.0.0-1.fc40.noarch
python3-azure-common-1:1.1.28-6.fc40.noarch
python3-azure-core-2:1.28.0-4.fc40.noarch
python3-azure-identity-1:1.10.0-9.fc39.noarch
python3-azure-mgmt-batch-17.0.0-5.fc40.noarch
python3-azure-mgmt-core-1:1.3.2-9.fc40.noarch
python3-azure-storage-blob-12.14.1-4.fc40.noarch
python3-boto-2.49.0-18.fc39.noarch
python3-cachetools-5.3.1-4.fc39.noarch
python3-certifi-2023.05.07-2.fc40.noarch
python3-cffi-1.15.1-6.fc39.x86_64
python3-connection_pool-0.0.3-9.fc39.noarch
python3-cryptography-41.0.3-2.fc40.x86_64
python3-datrie-0.8.2-10.fc39.x86_64
python3-dpath-2.1.4-3.fc39.noarch
python3-fasteners-0.18-9.fc40.noarch
python3-fastjsonschema-2.16.3-3.fc40.noarch
python3-gitdb-4.0.10-3.fc40.noarch
python3-google-api-client-2:2.93.0-2.fc40.noarch
python3-google-api-core-1:2.11.1-5.fc40.noarch
python3-google-auth-1:2.22.0-2.fc39.noarch
python3-google-auth-httplib2-0.1.0-8.fc40.noarch
python3-google-cloud-core-2.3.3-2.fc40.noarch
python3-google-cloud-storage-2.10.0-4.fc40.noarch
python3-google-crc32c-1.1.2-9.fc40.x86_64
python3-google-resumable-media-2.5.0-4.fc40.noarch
python3-googleapis-common-protos-1.60.0-2.fc40.noarch
python3-grpcio-1.48.4-24.fc39.x86_64
python3-grpcio-status-1.48.4-24.fc39.noarch
python3-httplib2-0.21.0-4.fc39.noarch
python3-humanfriendly-10.0-8.fc39.noarch
python3-isodate-0.6.1-9.fc40.noarch
python3-jsonschema-4.17.3-5.fc39.noarch
python3-jupyter-core-5.1.0-5.fc39.noarch
python3-jwt-2.6.0-4.fc40.noarch
python3-jwt+crypto-2.6.0-4.fc40.noarch
python3-msal-1.24.0~b1-9.fc40.noarch
python3-msal-extensions-1.0.0-7.fc40.noarch
python3-msrest-0.7.1-8.20230725git2d8fd04.fc40.noarch
python3-msrestazure-0.6.4-18.fc40.noarch
python3-nbformat-5.9.1-2.fc39.noarch
python3-oauth2client-4.1.3-23.fc39.noarch
python3-oauthlib-3.2.1-6.fc40.noarch
python3-plac-1.3.5-12.fc40.noarch
python3-platformdirs-3.9.1-2.fc39.noarch
python3-ply-3.11-20.fc39.noarch
python3-portalocker-2.7.0-5.fc40.noarch
python3-protobuf-3.19.6-6.fc40.x86_64
python3-psutil-5.9.5-1.fc39.x86_64
python3-pulp-2.7.0-3.fc40.noarch
python3-pyOpenSSL-23.2.0-1.fc40.noarch
python3-pyasn1-0.4.8-16.fc39.noarch
python3-pyasn1-modules-0.4.8-16.fc39.noarch
python3-pycparser-2.20-11.fc39.noarch
python3-pyparsing-3.0.9-11.fc39.noarch
python3-pyrsistent-0.19.3-10.fc40.x86_64
python3-requests-oauthlib-1.3.1-6.fc39.noarch
python3-reretry-0.11.8-5.fc40.noarch
python3-rsa-4.9-3.fc39.noarch
python3-slacker-0.14.0-12.fc40.noarch
python3-smart_open-6.3.0-5.fc40.noarch
python3-smmap-5.0.0-6.fc40.noarch
python3-stopit-1.1.2-8.fc39.noarch
python3-tabulate-0.9.0-4.fc40.noarch
python3-throttler-1.2.2-6.fc40.noarch
python3-toposort-1.10-3.fc40.noarch
python3-traitlets-5.9.0-3.fc39.noarch
python3-typing-extensions-4.7.1-2.fc40.noarch
python3-uritemplate-4.1.1-6.fc39.noarch
python3-wrapt-1.14.1-5.fc39.x86_64
python3-yte-1.5.1-5.fc39.noarch
python3-zombie-imp-0.0.2-2.fc40.noarch
re2-1:20220601-3.fc39.x86_64
Complete!
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1691625600
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.bKERUy
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf snakemake-7.32.3
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/snakemake-7.32.3.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd snakemake-7.32.3
+ rm -rf /builddir/build/BUILD/snakemake-7.32.3-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/snakemake-7.32.3-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/snakemake-7.11.0-docs-no-animated-demo.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP .
recursedown('.')
recursedown('./.github')
recursedown('./.github/ISSUE_TEMPLATE')
recursedown('./.github/workflows')
recursedown('./.github/workflows/scripts')
recursedown('./docs')
recursedown('./docs/_static')
recursedown('./docs/apidocs')
recursedown('./docs/apidocs/api_reference')
recursedown('./docs/apidocs/api_reference/internal')
recursedown('./docs/executing')
recursedown('./docs/executor_tutorial')
recursedown('./docs/executor_tutorial/workflow')
recursedown('./docs/getting_started')
recursedown('./docs/getting_started/img')
recursedown('./docs/project_info')
recursedown('./docs/project_info/img')
recursedown('./docs/snakefiles')
recursedown('./docs/snakefiles/images')
recursedown('./docs/tutorial')
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recursedown('./examples')
recursedown('./examples/c')
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recursedown('./examples/cufflinks')
recursedown('./examples/cufflinks/mapped')
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recursedown('./examples/hello-world/envs')
recursedown('./examples/hello-world/scripts')
recursedown('./examples/idea')
recursedown('./examples/latex')
recursedown('./examples/mirna')
recursedown('./images')
recursedown('./misc')
recursedown('./misc/nano')
recursedown('./misc/nano/syntax')
recursedown('./misc/vim')
recursedown('./misc/vim/ftdetect')
recursedown('./misc/vim/ftplugin')
recursedown('./misc/vim/ftplugin/snakemake')
recursedown('./misc/vim/syntax')
recursedown('./playground')
recursedown('./playground/iteration')
recursedown('./snakemake')
recursedown('./snakemake/caching')
recursedown('./snakemake/common')
recursedown('./snakemake/deployment')
recursedown('./snakemake/executors')
recursedown('./snakemake/executors/slurm')
recursedown('./snakemake/linting')
recursedown('./snakemake/remote')
recursedown('./snakemake/report')
recursedown('./snakemake/report/data')
recursedown('./snakemake/report/template')
recursedown('./snakemake/report/template/components')
recursedown('./snakemake/template_rendering')
recursedown('./snakemake/unit_tests')
recursedown('./snakemake/unit_tests/templates')
recursedown('./tests')
recursedown('./tests/knapsack')
recursedown('./tests/linting')
recursedown('./tests/linting/absolute_paths')
recursedown('./tests/linting/dynamic')
recursedown('./tests/linting/envvars')
recursedown('./tests/linting/iofile_by_index')
recursedown('./tests/linting/log_directive')
recursedown('./tests/linting/long_run')
recursedown('./tests/linting/missing_software_definition')
recursedown('./tests/linting/mixed_func_and_rules')
recursedown('./tests/linting/not_used_params')
recursedown('./tests/linting/params_prefix')
recursedown('./tests/linting/path_add')
recursedown('./tests/linting/singularity')
recursedown('./tests/linting/tab_usage')
recursedown('./tests/linting/version')
recursedown('./tests/profile')
recursedown('./tests/resources')
recursedown('./tests/resources/slurmcluster')
recursedown("./tests/test (with parenthese's)")
recursedown("./tests/test (with parenthese's)/expected-results")
recursedown('./tests/test01')
recursedown('./tests/test01/expected-results')
recursedown('./tests/test01/expected-results/dir')
recursedown('./tests/test02')
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recursedown('./tests/test07')
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recursedown('./tests/test09')
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recursedown('./tests/test10')
recursedown('./tests/test10/expected-results')
recursedown('./tests/test11')
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recursedown('./tests/test13/expected-results')
recursedown('./tests/test14')
recursedown('./tests/test14/expected-results')
recursedown('./tests/test15')
recursedown('./tests/test15/expected-results')
recursedown('./tests/testHighWorkload')
recursedown('./tests/testHighWorkload/mfa')
recursedown('./tests/test_all_temp')
recursedown('./tests/test_all_temp/expected-results')
recursedown('./tests/test_ancient')
recursedown('./tests/test_ancient/expected-results')
recursedown('./tests/test_ancient_dag')
recursedown('./tests/test_ancient_dag/expected-results')
recursedown('./tests/test_archive')
recursedown('./tests/test_archive/expected-results')
recursedown('./tests/test_azure_batch')
recursedown('./tests/test_azure_batch/expected-results')
recursedown('./tests/test_bash')
recursedown('./tests/test_bash/expected-results')
recursedown('./tests/test_batch')
recursedown('./tests/test_batch/expected-results')
recursedown('./tests/test_batch_final')
recursedown('./tests/test_batch_final/expected-results')
recursedown('./tests/test_benchmark')
recursedown('./tests/test_benchmark/expected-results')
recursedown('./tests/test_cache_multioutput')
recursedown('./tests/test_cache_multioutput/expected-results')
recursedown('./tests/test_checkpoint_allowed_rules')
recursedown('./tests/test_checkpoint_allowed_rules/expected-results')
recursedown('./tests/test_checkpoints')
recursedown('./tests/test_checkpoints/expected-results')
recursedown('./tests/test_checkpoints/expected-results/aggregated')
recursedown('./tests/test_checkpoints/samples')
recursedown('./tests/test_checkpoints_dir')
recursedown('./tests/test_checkpoints_dir/expected-results')
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recursedown('./tests/test_checkpoints_dir/samples')
recursedown('./tests/test_cloud_checkpoints_issue574')
recursedown('./tests/test_cloud_checkpoints_issue574/expected-results')
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recursedown('./tests/test_cluster_cancelscript/expected-results')
recursedown('./tests/test_cluster_sidecar')
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recursedown('./tests/test_conda/expected-results')
recursedown('./tests/test_conda_cmd_exe')
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recursedown('./tests/test_conda_custom_prefix')
recursedown('./tests/test_conda_custom_prefix/expected-results')
recursedown('./tests/test_conda_function')
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./tests/test_schema.py: no change
./tests/test_script.py: no change
./tests/test_slurm.py: no change
./tests/test_tes.py: no change
./tests/test_tibanna.py: no change
./tests/testapi.py: no change
./tests/tests.py: no change
./tests/test14/qsub.py: updating
./tests/test_benchmark/script.py: updating
./tests/test_conda_python_3_7_script/test_script.py: no change
./tests/test_conda_python_script/test_script.py: no change
./tests/test_filegraph/scripts/vis.py: no change
./tests/test_generate_unit_tests/expected-results/.tests/unit/test_a.py: no change
./tests/test_generate_unit_tests/expected-results/.tests/unit/test_all.py: no change
./tests/test_generate_unit_tests/expected-results/.tests/unit/test_b.py: no change
./tests/test_get_log_both/wrapper.py: no change
./tests/test_get_log_complex/wrapper.py: no change
./tests/test_get_log_none/wrapper.py: no change
./tests/test_get_log_stderr/wrapper.py: no change
./tests/test_get_log_stdout/wrapper.py: no change
./tests/test_github_issue1158/qsub.py: updating
./tests/test_github_issue627/job.py: updating
./tests/test_github_issue_14/local_script.py: no change
./tests/test_github_issue_14/pythonTest.py: updating
./tests/test_handover/script.py: no change
./tests/test_issue1046/my_wrapper/wrapper.py: no change
./tests/test_issue916/local_script.py: no change
./tests/test_issue916/pythonTest.py: updating
./tests/test_job_properties/qsub.py: updating
./tests/test_local_import/bar.py: no change
./tests/test_local_import/foo/__init__.py: no change
./tests/test_paramspace/scripts/simulate.py: no change
./tests/test_paramspace_single_wildcard/scripts/simulate.py: no change
./tests/test_prebuilt_conda_script/test.py: no change
./tests/test_prebuilt_conda_script/dummy_package/src/dummy/__init__.py: no change
./tests/test_prebuilt_conda_script/dummy_package/src/dummy/dummy.py: no change
./tests/test_report_display_code/test.py: no change
./tests/test_restartable_job_cmd_exit_1/qsub.py: updating
./tests/test_restartable_job_qsub_exit_1/qsub.py: updating
./tests/test_script/scripts/test.py: no change
./tests/test_script_py/scripts/test.py: no change
./tests/test_singularity/script.py: no change
./tests/test_singularity_module/script.py: no change
./tests/test_static_remote/S3MockedForStaticTest.py: no change
./tests/test_static_remote/__init__.py: no change
./tests/test_string_resources/qsub.py: updating
./tests/test_tibanna/cleanup.py: no change
./tests/test_tibanna/scripts/step2.py: no change
recursedown('./tests/test_remote_irods/expected-results')
recursedown('./tests/test_remote_irods/setup-data')
recursedown('./tests/test_remote_irods/test-data')
recursedown('./tests/test_remote_log')
recursedown('./tests/test_remote_log/expected-results')
recursedown('./tests/test_remote_ncbi')
recursedown('./tests/test_remote_ncbi/expected-results')
recursedown('./tests/test_remote_ncbi_simple')
recursedown('./tests/test_remote_ncbi_simple/expected-results')
recursedown('./tests/test_remote_sftp')
recursedown('./tests/test_remote_sftp/expected-results')
recursedown('./tests/test_remote_zenodo')
recursedown('./tests/test_remote_zenodo/expected-results')
recursedown('./tests/test_report')
recursedown('./tests/test_report/.snakemake')
recursedown('./tests/test_report/.snakemake/metadata')
recursedown('./tests/test_report/data')
recursedown('./tests/test_report/envs')
recursedown('./tests/test_report/expected-results')
recursedown('./tests/test_report/report')
recursedown('./tests/test_report/testdir')
recursedown('./tests/test_report_dir')
recursedown('./tests/test_report_dir/expected-results')
recursedown('./tests/test_report_dir/test')
recursedown('./tests/test_report_dir/test/js')
recursedown('./tests/test_report_display_code')
recursedown('./tests/test_report_display_code/expected-results')
recursedown('./tests/test_report_zip')
recursedown('./tests/test_report_zip/.snakemake')
recursedown('./tests/test_report_zip/.snakemake/metadata')
recursedown('./tests/test_report_zip/data')
recursedown('./tests/test_report_zip/envs')
recursedown('./tests/test_report_zip/expected-results')
recursedown('./tests/test_report_zip/report')
recursedown('./tests/test_report_zip/testdir')
recursedown('./tests/test_restartable_job_cmd_exit_1')
recursedown('./tests/test_restartable_job_cmd_exit_1/expected-results')
recursedown('./tests/test_restartable_job_qsub_exit_1')
recursedown('./tests/test_restartable_job_qsub_exit_1/expected-results')
recursedown('./tests/test_retries')
recursedown('./tests/test_retries/expected-results')
recursedown('./tests/test_retries_not_overriden')
recursedown('./tests/test_retries_not_overriden/expected-results')
recursedown('./tests/test_rule_defined_in_for_loop')
recursedown('./tests/test_rule_defined_in_for_loop/expected-results')
recursedown('./tests/test_rule_inheritance_globals')
recursedown('./tests/test_rule_inheritance_globals/.snakemake')
recursedown('./tests/test_rule_inheritance_globals/.snakemake/metadata')
recursedown('./tests/test_rule_inheritance_globals/expected-results')
recursedown('./tests/test_ruledag')
recursedown('./tests/test_ruledeps')
recursedown('./tests/test_ruledeps/expected-results')
recursedown('./tests/test_run_namedlist')
recursedown('./tests/test_run_namedlist/expected-results')
recursedown('./tests/test_same_wildcard')
recursedown('./tests/test_same_wildcard/expected-results')
recursedown('./tests/test_scatter_gather')
recursedown('./tests/test_scatter_gather/expected-results')
recursedown('./tests/test_scatter_gather/expected-results/gathered')
recursedown('./tests/test_scatter_gather/expected-results/splitted')
recursedown('./tests/test_scatter_gather_multiple_processes')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/gathered')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_a')
recursedown('./tests/test_scatter_gather_multiple_processes/expected-results/split_b')
recursedown('./tests/test_script')
recursedown('./tests/test_script/envs')
recursedown('./tests/test_script/expected-results')
recursedown('./tests/test_script/scripts')
recursedown('./tests/test_script_py')
recursedown('./tests/test_script_py/expected-results')
recursedown('./tests/test_script_py/scripts')
recursedown('./tests/test_service_jobs')
recursedown('./tests/test_service_jobs/expected-results')
recursedown('./tests/test_set_resources')
recursedown('./tests/test_set_resources/expected-results')
recursedown('./tests/test_shadow')
recursedown('./tests/test_shadow/expected-results')
recursedown('./tests/test_shadow_copy')
recursedown('./tests/test_shadow_copy/expected-results')
recursedown('./tests/test_shadow_prefix')
recursedown('./tests/test_shadow_prefix/expected-results')
recursedown('./tests/test_shadowed_log')
recursedown('./tests/test_shadowed_log/expected-results')
recursedown('./tests/test_shell')
recursedown('./tests/test_shell/expected-results')
recursedown('./tests/test_singularity')
recursedown('./tests/test_singularity/expected-results')
recursedown('./tests/test_singularity_conda')
recursedown('./tests/test_singularity_conda/expected-results')
recursedown('./tests/test_singularity_global')
recursedown('./tests/test_singularity_global/expected-results')
recursedown('./tests/test_singularity_module')
recursedown('./tests/test_singularity_module/expected-results')
recursedown('./tests/test_singularity_none')
recursedown('./tests/test_singularity_none/expected-results')
recursedown('./tests/test_slurm_mpi')
recursedown('./tests/test_slurm_mpi/envs')
recursedown('./tests/test_slurm_mpi/expected-results')
recursedown('./tests/test_solver')
recursedown('./tests/test_solver/expected-results')
recursedown('./tests/test_source_path')
recursedown('./tests/test_source_path/expected-results')
recursedown('./tests/test_source_path/workflow')
recursedown('./tests/test_source_path/workflow/resources')
recursedown('./tests/test_spaces_in_fnames')
recursedown('./tests/test_spaces_in_fnames/expected-results')
recursedown('./tests/test_speed')
recursedown('./tests/test_srcdir')
recursedown('./tests/test_srcdir/expected-results')
recursedown('./tests/test_static_remote')
recursedown('./tests/test_static_remote/expected-results')
recursedown('./tests/test_strict_mode')
recursedown('./tests/test_strict_mode/expected-results')
recursedown('./tests/test_string_resources')
recursedown('./tests/test_string_resources/expected-results')
recursedown('./tests/test_subworkflow_config')
recursedown('./tests/test_subworkflow_config/expected-results')
recursedown('./tests/test_subworkflows')
recursedown('./tests/test_subworkflows/expected-results')
recursedown('./tests/test_symlink_temp')
recursedown('./tests/test_symlink_temp/expected-results')
recursedown('./tests/test_symlink_time_handling')
recursedown('./tests/test_symlink_time_handling/expected-results')
recursedown('./tests/test_temp')
recursedown('./tests/test_temp/expected-results')
recursedown('./tests/test_temp_expand')
recursedown('./tests/test_temp_expand/expected-results')
recursedown('./tests/test_template_engine')
recursedown('./tests/test_template_engine/expected-results')
recursedown('./tests/test_tes')
recursedown('./tests/test_tes/expected-results')
recursedown('./tests/test_threads')
recursedown('./tests/test_threads/expected-results')
recursedown('./tests/test_threads0')
recursedown('./tests/test_threads0/expected-results')
recursedown('./tests/test_tibanna')
recursedown('./tests/test_tibanna/expected-results')
recursedown('./tests/test_tibanna/scripts')
recursedown('./tests/test_tmpdir')
recursedown('./tests/test_tmpdir/expected-results')
recursedown('./tests/test_touch')
recursedown('./tests/test_touch/expected-results')
recursedown('./tests/test_touch_pipeline_with_temp_dir')
recursedown('./tests/test_touch_pipeline_with_temp_dir/expected-results')
recursedown('./tests/test_touch_remote_prefix')
recursedown('./tests/test_touch_remote_prefix/expected-results')
recursedown('./tests/test_touch_with_directories')
recursedown('./tests/test_touch_with_directories/expected-results')
recursedown('./tests/test_unpack_dict')
recursedown('./tests/test_unpack_dict/expected-results')
recursedown('./tests/test_unpack_list')
recursedown('./tests/test_unpack_list/expected-results')
recursedown('./tests/test_until')
recursedown('./tests/test_until/expected-results')
recursedown('./tests/test_update_config')
recursedown('./tests/test_update_config/expected-results')
recursedown('./tests/test_url_include')
recursedown('./tests/test_url_include/expected-results')
recursedown('./tests/test_use_rule_same_module')
recursedown('./tests/test_use_rule_same_module/expected-results')
recursedown('./tests/test_validate')
recursedown('./tests/test_validate/expected-results')
recursedown('./tests/test_wildcard_count_ambiguity')
recursedown('./tests/test_wildcard_count_ambiguity/expected-results')
recursedown('./tests/test_wildcard_keyword')
recursedown('./tests/test_wildcard_keyword/expected-results')
recursedown('./tests/test_workflow_profile')
recursedown('./tests/test_workflow_profile/dummy-general-profile')
recursedown('./tests/test_workflow_profile/expected-results')
recursedown('./tests/test_workflow_profile/workflow')
recursedown('./tests/test_workflow_profile/workflow/profiles')
recursedown('./tests/test_workflow_profile/workflow/profiles/default')
recursedown('./tests/test_wrapper')
recursedown('./tests/test_wrapper/expected-results')
recursedown('./tests/test_xrootd')
recursedown('./tests/test_yaml_config')
recursedown('./tests/test_yaml_config/expected-results')
+ sed -r -i '1{/^#!/d}' snakemake/executors/jobscript.sh snakemake/executors/google_lifesciences_helper.py
+ sed -r -i 's@"python"@"/usr/bin/python3"@g' tests/test_linting.py
+ sed -r -i /sphinxcontrib-napoleon/d docs/requirements.txt
+ echo 'latex_engine = '\''xelatex'\'''
+ for editor in nano vim
+ cp -vp misc/nano/README.md README-nano.md
+ for editor in nano vim
+ cp -vp misc/vim/README.md README-vim.md
'misc/nano/README.md' -> 'README-nano.md'
'misc/vim/README.md' -> 'README-vim.md'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.Xynbi1
+ umask 022
+ cd /builddir/build/BUILD
+ cd snakemake-7.32.3
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/snakemake-7.32.3/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ TMPDIR=/builddir/build/BUILD/snakemake-7.32.3/.pyproject-builddir
+ RPM_TOXENV=py312
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.3/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.3-1.fc40.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt
Handling sphinx >=3 from requirements file docs/requirements.txt
Requirement satisfied: sphinx >=3
(installed: sphinx 7.0.1)
Handling sphinx-argparse from requirements file docs/requirements.txt
Requirement satisfied: sphinx-argparse
(installed: sphinx-argparse 0.4.0)
Handling sphinx_rtd_theme from requirements file docs/requirements.txt
Requirement satisfied: sphinx_rtd_theme
(installed: sphinx_rtd_theme 1.2.2)
Handling docutils from requirements file docs/requirements.txt
Requirement satisfied: docutils
(installed: docutils 0.20.1)
Handling myst-parser from requirements file docs/requirements.txt
Requirement satisfied: myst-parser
(installed: myst-parser 2.0.0)
Handling configargparse from requirements file docs/requirements.txt
Requirement satisfied: configargparse
(installed: configargparse 1.5.5)
Handling appdirs from requirements file docs/requirements.txt
Requirement satisfied: appdirs
(installed: appdirs 1.4.4)
Handling setuptools>=42 from build-system.requires
Requirement satisfied: setuptools>=42
(installed: setuptools 67.7.2)
Handling tomli; python_version < "3.11" from build-system.requires
Ignoring alien requirement: tomli; python_version < "3.11"
running egg_info
creating snakemake.egg-info
writing snakemake.egg-info/PKG-INFO
writing dependency_links to snakemake.egg-info/dependency_links.txt
writing entry points to snakemake.egg-info/entry_points.txt
writing requirements to snakemake.egg-info/requires.txt
writing top-level names to snakemake.egg-info/top_level.txt
writing manifest file 'snakemake.egg-info/SOURCES.txt'
reading manifest file 'snakemake.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.md'
adding license file 'AUTHORS.rst'
writing manifest file 'snakemake.egg-info/SOURCES.txt'
Handling wheel from get_requires_for_build_wheel
Requirement satisfied: wheel
(installed: wheel 0.41.1)
running dist_info
writing snakemake.egg-info/PKG-INFO
writing dependency_links to snakemake.egg-info/dependency_links.txt
writing entry points to snakemake.egg-info/entry_points.txt
writing requirements to snakemake.egg-info/requires.txt
writing top-level names to snakemake.egg-info/top_level.txt
reading manifest file 'snakemake.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.md'
adding license file 'AUTHORS.rst'
writing manifest file 'snakemake.egg-info/SOURCES.txt'
creating '/builddir/build/BUILD/snakemake-7.32.3/snakemake-7.32.3.dist-info'
Handling appdirs from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: appdirs
(installed: appdirs 1.4.4)
Handling configargparse from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: configargparse
(installed: configargparse 1.5.5)
Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: connection-pool >=0.0.3
(installed: connection-pool 0.0.3)
Handling datrie from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: datrie
(installed: datrie 0.8.2)
Handling docutils from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: docutils
(installed: docutils 0.20.1)
Handling gitpython from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: gitpython
(installed: gitpython 3.1.31)
Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: humanfriendly
(installed: humanfriendly 10.0)
Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: jinja2 <4.0,>=3.0
(installed: jinja2 3.1.2)
Handling jsonschema from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: jsonschema
(installed: jsonschema 4.17.3)
Handling nbformat from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: nbformat
(installed: nbformat 5.9.1)
Handling packaging from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: packaging
(installed: packaging 23.1)
Handling psutil from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: psutil
(installed: psutil 5.9.5)
Handling pulp >=2.0 from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: pulp >=2.0
(installed: pulp 2.7.0)
Handling pyyaml from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: pyyaml
(installed: pyyaml 6.0.1)
Handling requests from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: requests
(installed: requests 2.28.2)
Handling reretry from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: reretry
(installed: reretry 0.11.8)
Handling smart-open >=3.0 from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: smart-open >=3.0
(installed: smart-open 6.3.0)
Handling stopit from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: stopit
(installed: stopit 1.1.2)
Handling tabulate from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: tabulate
(installed: tabulate 0.9.0)
Handling throttler from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: throttler
(installed: throttler 1.2.2)
Handling toposort >=1.10 from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: toposort >=1.10
(installed: toposort 1.10)
Handling wrapt from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: wrapt
(installed: wrapt 1.14.1)
Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: yte <2.0,>=1.5.1
(installed: yte 1.5.1)
Handling azure-storage-blob ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: azure-storage-blob ; extra == 'azure'
(installed: azure-storage-blob 12.14.1)
Handling azure-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: azure-batch ; extra == 'azure'
(installed: azure-batch 14.0.0)
Handling azure-core ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: azure-core ; extra == 'azure'
(installed: azure-core 1.28.0)
Handling azure-identity ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: azure-identity ; extra == 'azure'
(installed: azure-identity 1.10.0)
Handling azure-mgmt-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: azure-mgmt-batch ; extra == 'azure'
(installed: azure-mgmt-batch 17.0.0)
Handling google-api-python-client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: google-api-python-client ; extra == 'google-cloud'
(installed: google-api-python-client 2.93.0)
Handling google-cloud-storage ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: google-cloud-storage ; extra == 'google-cloud'
(installed: google-cloud-storage 2.10.0)
Handling google-crc32c ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: google-crc32c ; extra == 'google-cloud'
(installed: google-crc32c 1.1.2)
Handling oauth2client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: oauth2client ; extra == 'google-cloud'
(installed: oauth2client 4.1.3)
Handling slacker ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: slacker ; extra == 'messaging'
(installed: slacker 0.14.0)
Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake)
Ignoring alien requirement: eido ; extra == 'pep'
Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake)
Ignoring alien requirement: peppy ; extra == 'pep'
Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: pygments ; extra == 'reports'
(installed: pygments 2.15.1)
+ cat /builddir/build/BUILD/snakemake-7.32.3-1.fc40.x86_64-pyproject-buildrequires
+ rm -rfv snakemake-7.32.3.dist-info/
removed 'snakemake-7.32.3.dist-info/AUTHORS.rst'
removed 'snakemake-7.32.3.dist-info/LICENSE.md'
removed 'snakemake-7.32.3.dist-info/METADATA'
removed 'snakemake-7.32.3.dist-info/entry_points.txt'
removed 'snakemake-7.32.3.dist-info/top_level.txt'
removed directory 'snakemake-7.32.3.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Wrote: /builddir/build/SRPMS/snakemake-7.32.3-1.fc40.buildreqs.nosrc.rpm
INFO: Going to install missing dynamic buildrequires
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository 36 kB/s | 1.5 kB 00:00
Copr repository 27 MB/s | 3.9 MB 00:00
fedora 496 kB/s | 22 kB 00:00
Package python3-jinja2-3.1.2-5.fc40.noarch is already installed.
Package python3-yte-1.5.1-5.fc39.noarch is already installed.
Package librsvg2-tools-2.56.90-9.fc39.x86_64 is already installed.
Package texlive-xindy-11:svn65958-77.fc39.x86_64 is already installed.
Package help2man-1.49.3-3.fc39.noarch is already installed.
Package latexmk-4.80-2.fc39.noarch is already installed.
Package make-1:4.4.1-2.fc39.x86_64 is already installed.
Package pyproject-rpm-macros-1.9.0-2.fc40.noarch is already installed.
Package python3-devel-3.12.0~rc1-1.fc40.x86_64 is already installed.
Package python3-devel-3.12.0~rc1-1.fc40.x86_64 is already installed.
Package python3-sphinx-latex-1:7.0.1-1.fc40.noarch is already installed.
Package python3-appdirs-1.4.4-11.fc40.noarch is already installed.
Package python3-azure-batch-14.0.0-1.fc40.noarch is already installed.
Package python3-azure-core-2:1.28.0-4.fc40.noarch is already installed.
Package python3-azure-identity-1:1.10.0-9.fc39.noarch is already installed.
Package python3-azure-mgmt-batch-17.0.0-5.fc40.noarch is already installed.
Package python3-azure-storage-blob-12.14.1-4.fc40.noarch is already installed.
Package python3-boto3-1.28.25-1.fc40.noarch is already installed.
Package python3-configargparse-1.5.5-2.fc39.noarch is already installed.
Package python3-configargparse-1.5.5-2.fc39.noarch is already installed.
Package python3-connection_pool-0.0.3-9.fc39.noarch is already installed.
Package python3-datrie-0.8.2-10.fc39.x86_64 is already installed.
Package python3-docutils-0.20.1-1.fc40.noarch is already installed.
Package python3-GitPython-3.1.31-3.fc40.noarch is already installed.
Package python3-google-api-client-2:2.93.0-2.fc40.noarch is already installed.
Package python3-google-cloud-storage-2.10.0-4.fc40.noarch is already installed.
Package python3-google-crc32c-1.1.2-9.fc40.x86_64 is already installed.
Package python3-humanfriendly-10.0-8.fc39.noarch is already installed.
Package python3-jsonschema-4.17.3-5.fc39.noarch is already installed.
Package python3-myst-parser-2.0.0-2.fc39.noarch is already installed.
Package python3-nbformat-5.9.1-2.fc39.noarch is already installed.
Package python3-oauth2client-4.1.3-23.fc39.noarch is already installed.
Package python3-packaging-23.1-4.fc39.noarch is already installed.
Package python3-pandas-1.5.3-7.fc39~bootstrap.x86_64 is already installed.
Package python3-pip-23.2.1-1.fc40.noarch is already installed.
Package python3-psutil-5.9.5-1.fc39.x86_64 is already installed.
Package python3-pulp-2.7.0-3.fc40.noarch is already installed.
Package python3-pygments-2.15.1-4.fc40.noarch is already installed.
Package python3-pytest-7.3.2-4.fc40.noarch is already installed.
Package python3-pyyaml-6.0.1-12.fc40.x86_64 is already installed.
Package python3-requests-2.28.2-5.fc40.noarch is already installed.
Package python3-requests-mock-1.10.0-5.fc40.noarch is already installed.
Package python3-reretry-0.11.8-5.fc40.noarch is already installed.
Package python3-setuptools-67.7.2-5.fc39.noarch is already installed.
Package python3-slacker-0.14.0-12.fc40.noarch is already installed.
Package python3-smart_open-6.3.0-5.fc40.noarch is already installed.
Package python3-sphinx-1:7.0.1-1.fc40.noarch is already installed.
Package python3-sphinx-argparse-0.4.0-4.fc39.noarch is already installed.
Package python3-sphinx_rtd_theme-1.2.2-1.fc40.noarch is already installed.
Package python3-stopit-1.1.2-8.fc39.noarch is already installed.
Package python3-tabulate-0.9.0-4.fc40.noarch is already installed.
Package python3-throttler-1.2.2-6.fc40.noarch is already installed.
Package python3-toposort-1.10-3.fc40.noarch is already installed.
Package python3-wheel-1:0.41.1-1.fc40.noarch is already installed.
Package python3-wrapt-1.14.1-5.fc39.x86_64 is already installed.
Package texlive-xetex-11:svn66203-77.fc39.x86_64 is already installed.
Package vim-filesystem-2:9.0.1712-1.fc40.noarch is already installed.
Dependencies resolved.
Nothing to do.
Complete!
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1691625600
Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.GxERM8
+ umask 022
+ cd /builddir/build/BUILD
+ cd snakemake-7.32.3
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ echo pyproject-rpm-macros
+ echo python3-devel
+ echo 'python3dist(pip) >= 19'
+ echo 'python3dist(packaging)'
+ '[' -f pyproject.toml ']'
+ echo '(python3dist(tomli) if python3-devel < 3.11)'
+ rm -rfv '*.dist-info/'
+ '[' -f /usr/bin/python3 ']'
+ mkdir -p /builddir/build/BUILD/snakemake-7.32.3/.pyproject-builddir
+ echo -n
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 '
+ TMPDIR=/builddir/build/BUILD/snakemake-7.32.3/.pyproject-builddir
+ RPM_TOXENV=py312
+ HOSTNAME=rpmbuild
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/snakemake-7.32.3/pyproject-wheeldir --output /builddir/build/BUILD/snakemake-7.32.3-1.fc40.x86_64-pyproject-buildrequires -x reports,messaging,google-cloud,azure docs/requirements.txt
Handling sphinx >=3 from requirements file docs/requirements.txt
Requirement satisfied: sphinx >=3
(installed: sphinx 7.0.1)
Handling sphinx-argparse from requirements file docs/requirements.txt
Requirement satisfied: sphinx-argparse
(installed: sphinx-argparse 0.4.0)
Handling sphinx_rtd_theme from requirements file docs/requirements.txt
Requirement satisfied: sphinx_rtd_theme
(installed: sphinx_rtd_theme 1.2.2)
Handling docutils from requirements file docs/requirements.txt
Requirement satisfied: docutils
(installed: docutils 0.20.1)
Handling myst-parser from requirements file docs/requirements.txt
Requirement satisfied: myst-parser
(installed: myst-parser 2.0.0)
Handling configargparse from requirements file docs/requirements.txt
Requirement satisfied: configargparse
(installed: configargparse 1.5.5)
Handling appdirs from requirements file docs/requirements.txt
Requirement satisfied: appdirs
(installed: appdirs 1.4.4)
Handling setuptools>=42 from build-system.requires
Requirement satisfied: setuptools>=42
(installed: setuptools 67.7.2)
Handling tomli; python_version < "3.11" from build-system.requires
Ignoring alien requirement: tomli; python_version < "3.11"
running egg_info
writing snakemake.egg-info/PKG-INFO
writing dependency_links to snakemake.egg-info/dependency_links.txt
writing entry points to snakemake.egg-info/entry_points.txt
writing requirements to snakemake.egg-info/requires.txt
writing top-level names to snakemake.egg-info/top_level.txt
reading manifest file 'snakemake.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.md'
adding license file 'AUTHORS.rst'
writing manifest file 'snakemake.egg-info/SOURCES.txt'
Handling wheel from get_requires_for_build_wheel
Requirement satisfied: wheel
(installed: wheel 0.41.1)
running dist_info
writing snakemake.egg-info/PKG-INFO
writing dependency_links to snakemake.egg-info/dependency_links.txt
writing entry points to snakemake.egg-info/entry_points.txt
writing requirements to snakemake.egg-info/requires.txt
writing top-level names to snakemake.egg-info/top_level.txt
reading manifest file 'snakemake.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.md'
adding license file 'AUTHORS.rst'
writing manifest file 'snakemake.egg-info/SOURCES.txt'
creating '/builddir/build/BUILD/snakemake-7.32.3/snakemake-7.32.3.dist-info'
Handling appdirs from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: appdirs
(installed: appdirs 1.4.4)
Handling configargparse from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: configargparse
(installed: configargparse 1.5.5)
Handling connection-pool >=0.0.3 from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: connection-pool >=0.0.3
(installed: connection-pool 0.0.3)
Handling datrie from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: datrie
(installed: datrie 0.8.2)
Handling docutils from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: docutils
(installed: docutils 0.20.1)
Handling gitpython from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: gitpython
(installed: gitpython 3.1.31)
Handling humanfriendly from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: humanfriendly
(installed: humanfriendly 10.0)
Handling jinja2 <4.0,>=3.0 from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: jinja2 <4.0,>=3.0
(installed: jinja2 3.1.2)
Handling jsonschema from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: jsonschema
(installed: jsonschema 4.17.3)
Handling nbformat from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: nbformat
(installed: nbformat 5.9.1)
Handling packaging from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: packaging
(installed: packaging 23.1)
Handling psutil from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: psutil
(installed: psutil 5.9.5)
Handling pulp >=2.0 from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: pulp >=2.0
(installed: pulp 2.7.0)
Handling pyyaml from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: pyyaml
(installed: pyyaml 6.0.1)
Handling requests from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: requests
(installed: requests 2.28.2)
Handling reretry from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: reretry
(installed: reretry 0.11.8)
Handling smart-open >=3.0 from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: smart-open >=3.0
(installed: smart-open 6.3.0)
Handling stopit from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: stopit
(installed: stopit 1.1.2)
Handling tabulate from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: tabulate
(installed: tabulate 0.9.0)
Handling throttler from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: throttler
(installed: throttler 1.2.2)
Handling toposort >=1.10 from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: toposort >=1.10
(installed: toposort 1.10)
Handling wrapt from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: wrapt
(installed: wrapt 1.14.1)
Handling yte <2.0,>=1.5.1 from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: yte <2.0,>=1.5.1
(installed: yte 1.5.1)
Handling azure-storage-blob ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: azure-storage-blob ; extra == 'azure'
(installed: azure-storage-blob 12.14.1)
Handling azure-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: azure-batch ; extra == 'azure'
(installed: azure-batch 14.0.0)
Handling azure-core ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: azure-core ; extra == 'azure'
(installed: azure-core 1.28.0)
Handling azure-identity ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: azure-identity ; extra == 'azure'
(installed: azure-identity 1.10.0)
Handling azure-mgmt-batch ; extra == 'azure' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: azure-mgmt-batch ; extra == 'azure'
(installed: azure-mgmt-batch 17.0.0)
Handling google-api-python-client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: google-api-python-client ; extra == 'google-cloud'
(installed: google-api-python-client 2.93.0)
Handling google-cloud-storage ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: google-cloud-storage ; extra == 'google-cloud'
(installed: google-cloud-storage 2.10.0)
Handling google-crc32c ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: google-crc32c ; extra == 'google-cloud'
(installed: google-crc32c 1.1.2)
Handling oauth2client ; extra == 'google-cloud' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: oauth2client ; extra == 'google-cloud'
(installed: oauth2client 4.1.3)
Handling slacker ; extra == 'messaging' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: slacker ; extra == 'messaging'
(installed: slacker 0.14.0)
Handling eido ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake)
Ignoring alien requirement: eido ; extra == 'pep'
Handling peppy ; extra == 'pep' from hook generated metadata: Requires-Dist (snakemake)
Ignoring alien requirement: peppy ; extra == 'pep'
Handling pygments ; extra == 'reports' from hook generated metadata: Requires-Dist (snakemake)
Requirement satisfied: pygments ; extra == 'reports'
(installed: pygments 2.15.1)
+ cat /builddir/build/BUILD/snakemake-7.32.3-1.fc40.x86_64-pyproject-buildrequires
+ rm -rfv snakemake-7.32.3.dist-info/
removed 'snakemake-7.32.3.dist-info/AUTHORS.rst'
removed 'snakemake-7.32.3.dist-info/LICENSE.md'
removed 'snakemake-7.32.3.dist-info/METADATA'
removed 'snakemake-7.32.3.dist-info/top_level.txt'
removed 'snakemake-7.32.3.dist-info/entry_points.txt'
removed directory 'snakemake-7.32.3.dist-info/'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.QXScTs
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd snakemake-7.32.3
+ mkdir -p /builddir/build/BUILD/snakemake-7.32.3/.pyproject-builddir
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ TMPDIR=/builddir/build/BUILD/snakemake-7.32.3/.pyproject-builddir
+ /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/snakemake-7.32.3/pyproject-wheeldir
Processing /builddir/build/BUILD/snakemake-7.32.3
Preparing metadata (pyproject.toml): started
Running command Preparing metadata (pyproject.toml)
running dist_info
creating /builddir/build/BUILD/snakemake-7.32.3/.pyproject-builddir/pip-modern-metadata-hpug1u9f/snakemake.egg-info
writing /builddir/build/BUILD/snakemake-7.32.3/.pyproject-builddir/pip-modern-metadata-hpug1u9f/snakemake.egg-info/PKG-INFO
writing dependency_links to /builddir/build/BUILD/snakemake-7.32.3/.pyproject-builddir/pip-modern-metadata-hpug1u9f/snakemake.egg-info/dependency_links.txt
writing entry points to /builddir/build/BUILD/snakemake-7.32.3/.pyproject-builddir/pip-modern-metadata-hpug1u9f/snakemake.egg-info/entry_points.txt
writing requirements to /builddir/build/BUILD/snakemake-7.32.3/.pyproject-builddir/pip-modern-metadata-hpug1u9f/snakemake.egg-info/requires.txt
writing top-level names to /builddir/build/BUILD/snakemake-7.32.3/.pyproject-builddir/pip-modern-metadata-hpug1u9f/snakemake.egg-info/top_level.txt
writing manifest file '/builddir/build/BUILD/snakemake-7.32.3/.pyproject-builddir/pip-modern-metadata-hpug1u9f/snakemake.egg-info/SOURCES.txt'
reading manifest file '/builddir/build/BUILD/snakemake-7.32.3/.pyproject-builddir/pip-modern-metadata-hpug1u9f/snakemake.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.md'
adding license file 'AUTHORS.rst'
writing manifest file '/builddir/build/BUILD/snakemake-7.32.3/.pyproject-builddir/pip-modern-metadata-hpug1u9f/snakemake.egg-info/SOURCES.txt'
creating '/builddir/build/BUILD/snakemake-7.32.3/.pyproject-builddir/pip-modern-metadata-hpug1u9f/snakemake-7.32.3.dist-info'
Preparing metadata (pyproject.toml): finished with status 'done'
Building wheels for collected packages: snakemake
Building wheel for snakemake (pyproject.toml): started
Running command Building wheel for snakemake (pyproject.toml)
running bdist_wheel
running build
running build_py
creating build
creating build/lib
creating build/lib/snakemake
copying snakemake/wrapper.py -> build/lib/snakemake
copying snakemake/workflow.py -> build/lib/snakemake
copying snakemake/utils.py -> build/lib/snakemake
copying snakemake/target_jobs.py -> build/lib/snakemake
copying snakemake/stats.py -> build/lib/snakemake
copying snakemake/sourcecache.py -> build/lib/snakemake
copying snakemake/shell.py -> build/lib/snakemake
copying snakemake/script.py -> build/lib/snakemake
copying snakemake/scheduler.py -> build/lib/snakemake
copying snakemake/rules.py -> build/lib/snakemake
copying snakemake/ruleinfo.py -> build/lib/snakemake
copying snakemake/resources.py -> build/lib/snakemake
copying snakemake/profiles.py -> build/lib/snakemake
copying snakemake/persistence.py -> build/lib/snakemake
copying snakemake/path_modifier.py -> build/lib/snakemake
copying snakemake/parser.py -> build/lib/snakemake
copying snakemake/output_index.py -> build/lib/snakemake
copying snakemake/notebook.py -> build/lib/snakemake
copying snakemake/modules.py -> build/lib/snakemake
copying snakemake/logging.py -> build/lib/snakemake
copying snakemake/jobs.py -> build/lib/snakemake
copying snakemake/io.py -> build/lib/snakemake
copying snakemake/interfaces.py -> build/lib/snakemake
copying snakemake/gui.py -> build/lib/snakemake
copying snakemake/exceptions.py -> build/lib/snakemake
copying snakemake/decorators.py -> build/lib/snakemake
copying snakemake/dag.py -> build/lib/snakemake
copying snakemake/cwl.py -> build/lib/snakemake
copying snakemake/checkpoints.py -> build/lib/snakemake
copying snakemake/benchmark.py -> build/lib/snakemake
copying snakemake/_version.py -> build/lib/snakemake
copying snakemake/__main__.py -> build/lib/snakemake
copying snakemake/__init__.py -> build/lib/snakemake
creating build/lib/snakemake/unit_tests
copying snakemake/unit_tests/__init__.py -> build/lib/snakemake/unit_tests
creating build/lib/snakemake/template_rendering
copying snakemake/template_rendering/yte.py -> build/lib/snakemake/template_rendering
copying snakemake/template_rendering/jinja2.py -> build/lib/snakemake/template_rendering
copying snakemake/template_rendering/__init__.py -> build/lib/snakemake/template_rendering
creating build/lib/snakemake/report
copying snakemake/report/rulegraph_spec.py -> build/lib/snakemake/report
copying snakemake/report/__init__.py -> build/lib/snakemake/report
creating build/lib/snakemake/remote
copying snakemake/remote/zenodo.py -> build/lib/snakemake/remote
copying snakemake/remote/webdav.py -> build/lib/snakemake/remote
copying snakemake/remote/iRODS.py -> build/lib/snakemake/remote
copying snakemake/remote/gridftp.py -> build/lib/snakemake/remote
copying snakemake/remote/gfal.py -> build/lib/snakemake/remote
copying snakemake/remote/dropbox.py -> build/lib/snakemake/remote
copying snakemake/remote/__init__.py -> build/lib/snakemake/remote
copying snakemake/remote/XRootD.py -> build/lib/snakemake/remote
copying snakemake/remote/SFTP.py -> build/lib/snakemake/remote
copying snakemake/remote/S3Mocked.py -> build/lib/snakemake/remote
copying snakemake/remote/S3.py -> build/lib/snakemake/remote
copying snakemake/remote/NCBI.py -> build/lib/snakemake/remote
copying snakemake/remote/HTTP.py -> build/lib/snakemake/remote
copying snakemake/remote/GS.py -> build/lib/snakemake/remote
copying snakemake/remote/FTP.py -> build/lib/snakemake/remote
copying snakemake/remote/EGA.py -> build/lib/snakemake/remote
copying snakemake/remote/AzBlob.py -> build/lib/snakemake/remote
creating build/lib/snakemake/linting
copying snakemake/linting/snakefiles.py -> build/lib/snakemake/linting
copying snakemake/linting/rules.py -> build/lib/snakemake/linting
copying snakemake/linting/links.py -> build/lib/snakemake/linting
copying snakemake/linting/__init__.py -> build/lib/snakemake/linting
creating build/lib/snakemake/executors
copying snakemake/executors/google_lifesciences_helper.py -> build/lib/snakemake/executors
copying snakemake/executors/google_lifesciences.py -> build/lib/snakemake/executors
copying snakemake/executors/ga4gh_tes.py -> build/lib/snakemake/executors
copying snakemake/executors/flux.py -> build/lib/snakemake/executors
copying snakemake/executors/common.py -> build/lib/snakemake/executors
copying snakemake/executors/azure_batch.py -> build/lib/snakemake/executors
copying snakemake/executors/__init__.py -> build/lib/snakemake/executors
creating build/lib/snakemake/deployment
copying snakemake/deployment/singularity.py -> build/lib/snakemake/deployment
copying snakemake/deployment/env_modules.py -> build/lib/snakemake/deployment
copying snakemake/deployment/containerize.py -> build/lib/snakemake/deployment
copying snakemake/deployment/conda.py -> build/lib/snakemake/deployment
copying snakemake/deployment/__init__.py -> build/lib/snakemake/deployment
creating build/lib/snakemake/common
copying snakemake/common/tbdstring.py -> build/lib/snakemake/common
copying snakemake/common/__init__.py -> build/lib/snakemake/common
creating build/lib/snakemake/caching
copying snakemake/caching/remote.py -> build/lib/snakemake/caching
copying snakemake/caching/local.py -> build/lib/snakemake/caching
copying snakemake/caching/hash.py -> build/lib/snakemake/caching
copying snakemake/caching/__init__.py -> build/lib/snakemake/caching
creating build/lib/snakemake/unit_tests/templates
copying snakemake/unit_tests/templates/__init__.py -> build/lib/snakemake/unit_tests/templates
creating build/lib/snakemake/report/template
copying snakemake/report/template/__init__.py -> build/lib/snakemake/report/template
creating build/lib/snakemake/report/data
copying snakemake/report/data/timeline.py -> build/lib/snakemake/report/data
copying snakemake/report/data/runtimes.py -> build/lib/snakemake/report/data
copying snakemake/report/data/rules.py -> build/lib/snakemake/report/data
copying snakemake/report/data/rulegraph.py -> build/lib/snakemake/report/data
copying snakemake/report/data/results.py -> build/lib/snakemake/report/data
copying snakemake/report/data/packages.py -> build/lib/snakemake/report/data
copying snakemake/report/data/common.py -> build/lib/snakemake/report/data
copying snakemake/report/data/categories.py -> build/lib/snakemake/report/data
copying snakemake/report/data/__init__.py -> build/lib/snakemake/report/data
creating build/lib/snakemake/report/template/components
copying snakemake/report/template/components/__init__.py -> build/lib/snakemake/report/template/components
creating build/lib/snakemake/executors/slurm
copying snakemake/executors/slurm/slurm_submit.py -> build/lib/snakemake/executors/slurm
copying snakemake/executors/slurm/slurm_jobstep.py -> build/lib/snakemake/executors/slurm
copying snakemake/executors/slurm/__init__.py -> build/lib/snakemake/executors/slurm
copying snakemake/report.css -> build/lib/snakemake
copying snakemake/gui.html -> build/lib/snakemake
copying snakemake/executors/jobscript.sh -> build/lib/snakemake/executors
copying snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/lib/snakemake/unit_tests/templates
copying snakemake/unit_tests/templates/common.py.jinja2 -> build/lib/snakemake/unit_tests/templates
copying snakemake/report/template/style.css -> build/lib/snakemake/report/template
copying snakemake/report/template/index.html.jinja2 -> build/lib/snakemake/report/template
copying snakemake/report/template/logo.svg -> build/lib/snakemake/report/template
copying snakemake/report/template/components/subcategory.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/stats.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/search_results.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/rule_info.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/rule_graph.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/result_view_button.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/result_info.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/report_info.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/navbar.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/menu.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/list_item.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/list_heading.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/icon.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/content.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/common.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/category.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/button.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/breadcrumbs.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/app.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/abstract_results.js -> build/lib/snakemake/report/template/components
copying snakemake/report/template/components/abstract_menu.js -> build/lib/snakemake/report/template/components
UPDATING build/lib/snakemake/_version.py
set build/lib/snakemake/_version.py to '7.32.3'
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/_version.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/gui.html -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/report.css -> build/bdist.linux-x86_64/wheel/snakemake
creating build/bdist.linux-x86_64/wheel/snakemake/caching
copying build/lib/snakemake/caching/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/caching
copying build/lib/snakemake/caching/hash.py -> build/bdist.linux-x86_64/wheel/snakemake/caching
copying build/lib/snakemake/caching/local.py -> build/bdist.linux-x86_64/wheel/snakemake/caching
copying build/lib/snakemake/caching/remote.py -> build/bdist.linux-x86_64/wheel/snakemake/caching
creating build/bdist.linux-x86_64/wheel/snakemake/common
copying build/lib/snakemake/common/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/common
copying build/lib/snakemake/common/tbdstring.py -> build/bdist.linux-x86_64/wheel/snakemake/common
creating build/bdist.linux-x86_64/wheel/snakemake/deployment
copying build/lib/snakemake/deployment/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment
copying build/lib/snakemake/deployment/conda.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment
copying build/lib/snakemake/deployment/containerize.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment
copying build/lib/snakemake/deployment/env_modules.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment
copying build/lib/snakemake/deployment/singularity.py -> build/bdist.linux-x86_64/wheel/snakemake/deployment
creating build/bdist.linux-x86_64/wheel/snakemake/executors
copying build/lib/snakemake/executors/jobscript.sh -> build/bdist.linux-x86_64/wheel/snakemake/executors
creating build/bdist.linux-x86_64/wheel/snakemake/executors/slurm
copying build/lib/snakemake/executors/slurm/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/executors/slurm
copying build/lib/snakemake/executors/slurm/slurm_jobstep.py -> build/bdist.linux-x86_64/wheel/snakemake/executors/slurm
copying build/lib/snakemake/executors/slurm/slurm_submit.py -> build/bdist.linux-x86_64/wheel/snakemake/executors/slurm
copying build/lib/snakemake/executors/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/executors
copying build/lib/snakemake/executors/azure_batch.py -> build/bdist.linux-x86_64/wheel/snakemake/executors
copying build/lib/snakemake/executors/common.py -> build/bdist.linux-x86_64/wheel/snakemake/executors
copying build/lib/snakemake/executors/flux.py -> build/bdist.linux-x86_64/wheel/snakemake/executors
copying build/lib/snakemake/executors/ga4gh_tes.py -> build/bdist.linux-x86_64/wheel/snakemake/executors
copying build/lib/snakemake/executors/google_lifesciences.py -> build/bdist.linux-x86_64/wheel/snakemake/executors
copying build/lib/snakemake/executors/google_lifesciences_helper.py -> build/bdist.linux-x86_64/wheel/snakemake/executors
creating build/bdist.linux-x86_64/wheel/snakemake/linting
copying build/lib/snakemake/linting/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/linting
copying build/lib/snakemake/linting/links.py -> build/bdist.linux-x86_64/wheel/snakemake/linting
copying build/lib/snakemake/linting/rules.py -> build/bdist.linux-x86_64/wheel/snakemake/linting
copying build/lib/snakemake/linting/snakefiles.py -> build/bdist.linux-x86_64/wheel/snakemake/linting
creating build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/AzBlob.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/EGA.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/FTP.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/GS.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/HTTP.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/NCBI.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/S3.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/S3Mocked.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/SFTP.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/XRootD.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/dropbox.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/gfal.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/gridftp.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/iRODS.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/webdav.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
copying build/lib/snakemake/remote/zenodo.py -> build/bdist.linux-x86_64/wheel/snakemake/remote
creating build/bdist.linux-x86_64/wheel/snakemake/report
creating build/bdist.linux-x86_64/wheel/snakemake/report/data
copying build/lib/snakemake/report/data/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data
copying build/lib/snakemake/report/data/categories.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data
copying build/lib/snakemake/report/data/common.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data
copying build/lib/snakemake/report/data/packages.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data
copying build/lib/snakemake/report/data/results.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data
copying build/lib/snakemake/report/data/rulegraph.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data
copying build/lib/snakemake/report/data/rules.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data
copying build/lib/snakemake/report/data/runtimes.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data
copying build/lib/snakemake/report/data/timeline.py -> build/bdist.linux-x86_64/wheel/snakemake/report/data
creating build/bdist.linux-x86_64/wheel/snakemake/report/template
copying build/lib/snakemake/report/template/logo.svg -> build/bdist.linux-x86_64/wheel/snakemake/report/template
copying build/lib/snakemake/report/template/index.html.jinja2 -> build/bdist.linux-x86_64/wheel/snakemake/report/template
copying build/lib/snakemake/report/template/style.css -> build/bdist.linux-x86_64/wheel/snakemake/report/template
creating build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/abstract_menu.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/abstract_results.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/app.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/breadcrumbs.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/button.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/category.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/common.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/content.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/icon.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/list_heading.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/list_item.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/menu.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/navbar.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/report_info.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/result_info.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/result_view_button.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/rule_graph.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/rule_info.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/search_results.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/stats.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/subcategory.js -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/components/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report/template/components
copying build/lib/snakemake/report/template/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report/template
copying build/lib/snakemake/report/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/report
copying build/lib/snakemake/report/rulegraph_spec.py -> build/bdist.linux-x86_64/wheel/snakemake/report
creating build/bdist.linux-x86_64/wheel/snakemake/template_rendering
copying build/lib/snakemake/template_rendering/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/template_rendering
copying build/lib/snakemake/template_rendering/jinja2.py -> build/bdist.linux-x86_64/wheel/snakemake/template_rendering
copying build/lib/snakemake/template_rendering/yte.py -> build/bdist.linux-x86_64/wheel/snakemake/template_rendering
creating build/bdist.linux-x86_64/wheel/snakemake/unit_tests
creating build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates
copying build/lib/snakemake/unit_tests/templates/common.py.jinja2 -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates
copying build/lib/snakemake/unit_tests/templates/ruletest.py.jinja2 -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates
copying build/lib/snakemake/unit_tests/templates/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests/templates
copying build/lib/snakemake/unit_tests/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake/unit_tests
copying build/lib/snakemake/__init__.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/__main__.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/benchmark.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/checkpoints.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/cwl.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/dag.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/decorators.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/exceptions.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/gui.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/interfaces.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/io.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/jobs.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/logging.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/modules.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/notebook.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/output_index.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/parser.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/path_modifier.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/persistence.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/profiles.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/resources.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/ruleinfo.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/rules.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/scheduler.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/script.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/shell.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/sourcecache.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/stats.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/target_jobs.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/utils.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/workflow.py -> build/bdist.linux-x86_64/wheel/snakemake
copying build/lib/snakemake/wrapper.py -> build/bdist.linux-x86_64/wheel/snakemake
running install_egg_info
running egg_info
writing snakemake.egg-info/PKG-INFO
writing dependency_links to snakemake.egg-info/dependency_links.txt
writing entry points to snakemake.egg-info/entry_points.txt
writing requirements to snakemake.egg-info/requires.txt
writing top-level names to snakemake.egg-info/top_level.txt
reading manifest file 'snakemake.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.md'
adding license file 'AUTHORS.rst'
writing manifest file 'snakemake.egg-info/SOURCES.txt'
Copying snakemake.egg-info to build/bdist.linux-x86_64/wheel/snakemake-7.32.3-py3.12.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/snakemake-7.32.3.dist-info/WHEEL
creating '/builddir/build/BUILD/snakemake-7.32.3/.pyproject-builddir/pip-wheel-wu_8_xzs/.tmp-wtq5kdze/snakemake-7.32.3-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'snakemake/__init__.py'
adding 'snakemake/__main__.py'
adding 'snakemake/_version.py'
adding 'snakemake/benchmark.py'
adding 'snakemake/checkpoints.py'
adding 'snakemake/cwl.py'
adding 'snakemake/dag.py'
adding 'snakemake/decorators.py'
adding 'snakemake/exceptions.py'
adding 'snakemake/gui.html'
adding 'snakemake/gui.py'
adding 'snakemake/interfaces.py'
adding 'snakemake/io.py'
adding 'snakemake/jobs.py'
adding 'snakemake/logging.py'
adding 'snakemake/modules.py'
adding 'snakemake/notebook.py'
adding 'snakemake/output_index.py'
adding 'snakemake/parser.py'
adding 'snakemake/path_modifier.py'
adding 'snakemake/persistence.py'
adding 'snakemake/profiles.py'
adding 'snakemake/report.css'
adding 'snakemake/resources.py'
adding 'snakemake/ruleinfo.py'
adding 'snakemake/rules.py'
adding 'snakemake/scheduler.py'
adding 'snakemake/script.py'
adding 'snakemake/shell.py'
adding 'snakemake/sourcecache.py'
adding 'snakemake/stats.py'
adding 'snakemake/target_jobs.py'
adding 'snakemake/utils.py'
adding 'snakemake/workflow.py'
adding 'snakemake/wrapper.py'
adding 'snakemake/caching/__init__.py'
adding 'snakemake/caching/hash.py'
adding 'snakemake/caching/local.py'
adding 'snakemake/caching/remote.py'
adding 'snakemake/common/__init__.py'
adding 'snakemake/common/tbdstring.py'
adding 'snakemake/deployment/__init__.py'
adding 'snakemake/deployment/conda.py'
adding 'snakemake/deployment/containerize.py'
adding 'snakemake/deployment/env_modules.py'
adding 'snakemake/deployment/singularity.py'
adding 'snakemake/executors/__init__.py'
adding 'snakemake/executors/azure_batch.py'
adding 'snakemake/executors/common.py'
adding 'snakemake/executors/flux.py'
adding 'snakemake/executors/ga4gh_tes.py'
adding 'snakemake/executors/google_lifesciences.py'
adding 'snakemake/executors/google_lifesciences_helper.py'
adding 'snakemake/executors/jobscript.sh'
adding 'snakemake/executors/slurm/__init__.py'
adding 'snakemake/executors/slurm/slurm_jobstep.py'
adding 'snakemake/executors/slurm/slurm_submit.py'
adding 'snakemake/linting/__init__.py'
adding 'snakemake/linting/links.py'
adding 'snakemake/linting/rules.py'
adding 'snakemake/linting/snakefiles.py'
adding 'snakemake/remote/AzBlob.py'
adding 'snakemake/remote/EGA.py'
adding 'snakemake/remote/FTP.py'
adding 'snakemake/remote/GS.py'
adding 'snakemake/remote/HTTP.py'
adding 'snakemake/remote/NCBI.py'
adding 'snakemake/remote/S3.py'
adding 'snakemake/remote/S3Mocked.py'
adding 'snakemake/remote/SFTP.py'
adding 'snakemake/remote/XRootD.py'
adding 'snakemake/remote/__init__.py'
adding 'snakemake/remote/dropbox.py'
adding 'snakemake/remote/gfal.py'
adding 'snakemake/remote/gridftp.py'
adding 'snakemake/remote/iRODS.py'
adding 'snakemake/remote/webdav.py'
adding 'snakemake/remote/zenodo.py'
adding 'snakemake/report/__init__.py'
adding 'snakemake/report/rulegraph_spec.py'
adding 'snakemake/report/data/__init__.py'
adding 'snakemake/report/data/categories.py'
adding 'snakemake/report/data/common.py'
adding 'snakemake/report/data/packages.py'
adding 'snakemake/report/data/results.py'
adding 'snakemake/report/data/rulegraph.py'
adding 'snakemake/report/data/rules.py'
adding 'snakemake/report/data/runtimes.py'
adding 'snakemake/report/data/timeline.py'
adding 'snakemake/report/template/__init__.py'
adding 'snakemake/report/template/index.html.jinja2'
adding 'snakemake/report/template/logo.svg'
adding 'snakemake/report/template/style.css'
adding 'snakemake/report/template/components/__init__.py'
adding 'snakemake/report/template/components/abstract_menu.js'
adding 'snakemake/report/template/components/abstract_results.js'
adding 'snakemake/report/template/components/app.js'
adding 'snakemake/report/template/components/breadcrumbs.js'
adding 'snakemake/report/template/components/button.js'
adding 'snakemake/report/template/components/category.js'
adding 'snakemake/report/template/components/common.js'
adding 'snakemake/report/template/components/content.js'
adding 'snakemake/report/template/components/icon.js'
adding 'snakemake/report/template/components/list_heading.js'
adding 'snakemake/report/template/components/list_item.js'
adding 'snakemake/report/template/components/menu.js'
adding 'snakemake/report/template/components/navbar.js'
adding 'snakemake/report/template/components/report_info.js'
adding 'snakemake/report/template/components/result_info.js'
adding 'snakemake/report/template/components/result_view_button.js'
adding 'snakemake/report/template/components/rule_graph.js'
adding 'snakemake/report/template/components/rule_info.js'
adding 'snakemake/report/template/components/search_results.js'
adding 'snakemake/report/template/components/stats.js'
adding 'snakemake/report/template/components/subcategory.js'
adding 'snakemake/template_rendering/__init__.py'
adding 'snakemake/template_rendering/jinja2.py'
adding 'snakemake/template_rendering/yte.py'
adding 'snakemake/unit_tests/__init__.py'
adding 'snakemake/unit_tests/templates/__init__.py'
adding 'snakemake/unit_tests/templates/common.py.jinja2'
adding 'snakemake/unit_tests/templates/ruletest.py.jinja2'
adding 'snakemake-7.32.3.dist-info/AUTHORS.rst'
adding 'snakemake-7.32.3.dist-info/LICENSE.md'
adding 'snakemake-7.32.3.dist-info/METADATA'
adding 'snakemake-7.32.3.dist-info/WHEEL'
adding 'snakemake-7.32.3.dist-info/entry_points.txt'
adding 'snakemake-7.32.3.dist-info/top_level.txt'
adding 'snakemake-7.32.3.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
Building wheel for snakemake (pyproject.toml): finished with status 'done'
Created wheel for snakemake: filename=snakemake-7.32.3-py3-none-any.whl size=382385 sha256=92fc7de6ada3257811d26cedc63c25254730d88be4aabfc285cfac728ba34bc5
Stored in directory: /builddir/.cache/pip/wheels/0a/2b/d9/1db36d9a23c456bc3e423129017a1cca045f7acff1ee1645ed
Successfully built snakemake
+ read -r fn
+ find docs -type f -name '*.svg'
++ dirname docs/executor_tutorial/workflow/quals.svg
++ basename docs/executor_tutorial/workflow/quals.svg .svg
+ rsvg-convert --format=pdf --output=docs/executor_tutorial/workflow/quals.pdf docs/executor_tutorial/workflow/quals.svg
+ read -r fn
+ find docs/executor_tutorial -type f -exec gawk '/\.svg/ { print FILENAME; nextfile }' '{}' +
+ xargs -r -t sed -r -i 's/(image::.*)\.svg/\1\.pdf/'
sed -r -i 's/(image::.*)\.svg/\1\.pdf/' docs/executor_tutorial/google_lifesciences.rst docs/executor_tutorial/azure_batch.rst
+ PYTHONPATH=/builddir/build/BUILD/snakemake-7.32.3
+ /usr/bin/make -O -j2 V=1 VERBOSE=1 -C docs latexpdf 'SPHINXOPTS=-j${RPM_BUILD_NCPUS}'
make: Entering directory '/builddir/build/BUILD/snakemake-7.32.3/docs'
sphinx-build -b latex -d _build/doctrees -j2 . _build/latex
Running Sphinx v7.0.1
making output directory... done
myst v2.0.0: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions=set(), disable_syntax=[], all_links_external=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=0, heading_slug_func=None, html_meta={}, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, suppress_warnings=[], highlight_code_blocks=True)
building [mo]: targets for 0 po files that are out of date
writing output...
building [latex]: all documents
updating environment: [new config] 38 added, 0 changed, 0 removed
reading sources... [ 33%] executing/caching .. getting_started/installation
reading sources... [ 66%] index .. snakefiles/modularization
reading sources... [100%] snakefiles/remote_files .. tutorial/tutorial
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
processing Snakemake.tex... index getting_started/installation tutorial/tutorial tutorial/setup tutorial/basics tutorial/advanced tutorial/additional_features tutorial/short executor_tutorial/tutorial executor_tutorial/azure_batch executor_tutorial/azure_aks executor_tutorial/google_lifesciences executor_tutorial/flux snakefiles/best_practices executing/cli executing/cluster executing/cloud executing/grouping executing/caching executing/interoperability executing/monitoring snakefiles/writing_snakefiles snakefiles/rules snakefiles/configuration snakefiles/modularization snakefiles/remote_files snakefiles/utils snakefiles/deployment snakefiles/reporting snakefiles/testing snakefiles/foreign_wms project_info/citations project_info/more_resources project_info/faq project_info/contributing project_info/authors project_info/history project_info/license
resolving references...
done
writing... done
copying images... [ 16%] tutorial/workflow/dag_index.png
copying images... [ 33%] tutorial/workflow/dag_call.png
copying images... [ 50%] executor_tutorial/workflow/upload-google-storage.png
copying images... [ 66%] executor_tutorial/workflow/quals.pdf
copying images... [ 83%] executor_tutorial/workflow/results-google-storage.png
copying images... [100%] project_info/img/idea.png
copying TeX support files... copying TeX support files...
done
build succeeded, 496 warnings.
The LaTeX files are in _build/latex.
Run 'make' in that directory to run these through (pdf)latex
(use `make latexpdf' here to do that automatically).
Running LaTeX files through pdflatex...
/builddir/build/BUILD/snakemake-7.32.3/docs/executing/cli.rst:174: CRITICAL: Title level inconsistent:
Use templating in profiles
~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/snakemake-7.32.3/docs/executing/cli.rst:111: WARNING: duplicate label profiles, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/executing/cli.rst
/builddir/build/BUILD/snakemake-7.32.3/docs/executing/cloud.rst:72: WARNING: duplicate label kubernetes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/executing/cli.rst
/builddir/build/BUILD/snakemake-7.32.3/docs/executing/cloud.rst:233: WARNING: duplicate label machine types, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/executing/cloud.rst
/builddir/build/BUILD/snakemake-7.32.3/docs/executing/cloud.rst:406: WARNING: duplicate label execution, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/executing/cli.rst
/builddir/build/BUILD/snakemake-7.32.3/docs/executing/cloud.rst:490: WARNING: duplicate label execution, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/executing/cloud.rst
/builddir/build/BUILD/snakemake-7.32.3/docs/executing/cluster.rst:13: WARNING: Title overline too short.
--------------
Executing on SLURM clusters
--------------
/builddir/build/BUILD/snakemake-7.32.3/docs/executing/cluster.rst:5: WARNING: duplicate label cluster, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/executing/cli.rst
/builddir/build/BUILD/snakemake-7.32.3/docs/executing/monitoring.rst:5: WARNING: duplicate label monitoring, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/executing/monitoring.rst
/builddir/build/BUILD/snakemake-7.32.3/docs/executor_tutorial/azure_aks.rst:184: ERROR: Unexpected indentation.
/builddir/build/BUILD/snakemake-7.32.3/docs/executor_tutorial/azure_batch.rst:47: WARNING: Title underline too short.
Create an Azure Storage Account and upload example data
:::::::::::::::::::::::::::::::::::::::::::::::
/builddir/build/BUILD/snakemake-7.32.3/docs/executor_tutorial/azure_batch.rst:47: WARNING: Title underline too short.
Create an Azure Storage Account and upload example data
:::::::::::::::::::::::::::::::::::::::::::::::
/builddir/build/BUILD/snakemake-7.32.3/docs/executor_tutorial/azure_batch.rst:119: WARNING: Title underline too short.
Azure Blob Storage Warning:
:::::::::::::::::::
/builddir/build/BUILD/snakemake-7.32.3/docs/executor_tutorial/azure_batch.rst:119: WARNING: Title underline too short.
Azure Blob Storage Warning:
:::::::::::::::::::
/builddir/build/BUILD/snakemake-7.32.3/docs/executor_tutorial/azure_batch.rst:367: WARNING: Title underline too short.
Defining a Start Task
:::::
/builddir/build/BUILD/snakemake-7.32.3/docs/executor_tutorial/azure_batch.rst:367: WARNING: Title underline too short.
Defining a Start Task
:::::
/builddir/build/BUILD/snakemake-7.32.3/docs/executor_tutorial/azure_batch.rst:386: WARNING: Title underline too short.
Autoscaling and Task Distribution
:::::
/builddir/build/BUILD/snakemake-7.32.3/docs/executor_tutorial/azure_batch.rst:386: WARNING: Title underline too short.
Autoscaling and Task Distribution
:::::
/builddir/build/BUILD/snakemake-7.32.3/docs/executor_tutorial/azure_batch.rst:28: WARNING: duplicate label setup, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/executor_tutorial/azure_aks.rst
/builddir/build/BUILD/snakemake-7.32.3/docs/executor_tutorial/azure_batch.rst:163: WARNING: duplicate label running the workflow, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/executor_tutorial/azure_aks.rst
/builddir/build/BUILD/snakemake-7.32.3/docs/executor_tutorial/flux.rst:13: WARNING: duplicate label setup, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/executor_tutorial/azure_batch.rst
/builddir/build/BUILD/snakemake-7.32.3/docs/executor_tutorial/google_lifesciences.rst:13: WARNING: duplicate label setup, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/executor_tutorial/flux.rst
/builddir/build/BUILD/snakemake-7.32.3/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here".
/builddir/build/BUILD/snakemake-7.32.3/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here".
/builddir/build/BUILD/snakemake-7.32.3/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here".
/builddir/build/BUILD/snakemake-7.32.3/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here".
/builddir/build/BUILD/snakemake-7.32.3/docs/project_info/faq.rst:5: WARNING: Duplicate explicit target name: "here".
/builddir/build/BUILD/snakemake-7.32.3/docs/project_info/faq.rst:688: WARNING: Title underline too short.
How can I avoid system /tmp to be used when combining singularity and conda?
------------------------------------------------------
/builddir/build/BUILD/snakemake-7.32.3/docs/project_info/faq.rst:688: WARNING: Title underline too short.
How can I avoid system /tmp to be used when combining singularity and conda?
------------------------------------------------------
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1604: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1625: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1631: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1657: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1661: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1667: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1676: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1684: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1739: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1746: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1758: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1766: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1789: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1793: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1803: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1810: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1825: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1830: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1837: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1852: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1891: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1898: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1913: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1920: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1928: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1932: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1941: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1947: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1954: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1965: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1982: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:1986: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2013: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2018: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2039: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2046: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2060: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2071: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2084: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2093: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2118: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2127: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2154: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2160: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2175: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2181: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2223: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2227: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2283: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2300: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2306: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2340: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2387: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2397: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2406: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2417: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2441: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2455: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2464: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2482: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2491: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2496: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2522: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2535: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2541: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2551: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2571: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2625: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2641: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2650: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2673: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2693: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2724: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2757: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2778: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2797: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2826: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2926: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:2935: WARNING: Non-consecutive header level increase; H2 to H4 [myst.header]
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:14: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:21: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:42: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:52: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:59: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:64: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:71: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:81: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:91: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:101: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:108: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:115: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:120: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:129: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:139: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:146: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:153: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:161: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:168: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:173: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:180: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:187: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:193: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:200: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:207: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:214: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:223: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:230: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:238: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:244: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:250: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:259: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:269: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:276: WARNING: duplicate label performance improvements, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:281: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:288: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:293: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:302: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:309: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:316: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:322: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:327: WARNING: duplicate label performance improvements, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:334: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:339: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:347: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:353: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:362: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:370: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:390: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:398: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:403: WARNING: duplicate label documentation, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:415: WARNING: duplicate label features, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:422: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:432: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:442: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
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/builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md:456: WARNING: duplicate label bug fixes, other instance in /builddir/build/BUILD/snakemake-7.32.3/docs/project_info/history.md
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WARNING: Could not fetch remote image: https://img.shields.io/badge/Gitpod-ready--to--code-blue?logo=gitpod [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /badge/Gitpod-ready--to--code-blue?logo=gitpod (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fb06c9dcaa0>: Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))]
WARNING: Could not fetch remote image: https://img.shields.io/conda/dn/bioconda/snakemake.svg?label=Bioconda [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /conda/dn/bioconda/snakemake.svg?label=Bioconda (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fb06bb88170>: Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))]
WARNING: Could not fetch remote image: https://img.shields.io/pypi/pyversions/snakemake.svg [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /pypi/pyversions/snakemake.svg (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fb06bb88260>: Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))]
WARNING: Could not fetch remote image: https://img.shields.io/pypi/v/snakemake.svg [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /pypi/v/snakemake.svg (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fb06bb88500>: Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))]
WARNING: Could not fetch remote image: https://img.shields.io/github/workflow/status/snakemake/snakemake/Publish%20to%20Docker%20Hub?color=blue&label=docker%20container&branch=main [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /github/workflow/status/snakemake/snakemake/Publish%20to%20Docker%20Hub?color=blue&label=docker%20container&branch=main (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fb06bb88320>: Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))]
WARNING: Could not fetch remote image: https://github.com/snakemake/snakemake/workflows/CI/badge.svg?branch=main&label=tests [HTTPSConnectionPool(host='github.com', port=443): Max retries exceeded with url: /snakemake/snakemake/workflows/CI/badge.svg?branch=main&label=tests (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fb06bb88ad0>: Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))]
WARNING: Could not fetch remote image: https://img.shields.io/badge/stack-overflow-orange.svg [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /badge/stack-overflow-orange.svg (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fb06bb88a40>: Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))]
WARNING: Could not fetch remote image: https://img.shields.io/twitter/follow/johanneskoester.svg?style=social&label=Follow [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /twitter/follow/johanneskoester.svg?style=social&label=Follow (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fb06bb88a40>: Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))]
WARNING: Could not fetch remote image: https://img.shields.io/discord/753690260830945390?label=discord%20chat [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /discord/753690260830945390?label=discord%20chat (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fb06bb88bf0>: Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))]
WARNING: Could not fetch remote image: https://img.shields.io/github/stars/snakemake/snakemake?style=social [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /github/stars/snakemake/snakemake?style=social (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fb06bb88bf0>: Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))]
WARNING: Could not fetch remote image: https://img.shields.io/badge/snakemake-≥5.6.0-brightgreen.svg?style=flat [HTTPSConnectionPool(host='img.shields.io', port=443): Max retries exceeded with url: /badge/snakemake-%E2%89%A55.6.0-brightgreen.svg?style=flat (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7fb06bb88c50>: Failed to establish a new connection: [Errno -3] Temporary failure in name resolution'))]
/builddir/build/BUILD/snakemake-7.32.3/docs/executor_tutorial/azure_batch.rst:266: WARNING: Could not lex literal_block '# required env variables\nexport AZ_BLOB_PREFIX=snakemake-tutorial\nexport AZ_BATCH_ACCOUNT_URL="${batch_account_url}"\nexport AZ_BATCH_ACCOUNT_KEY="${az_batch_account_key}"\nexport AZ_BLOB_ACCOUNT_URL="${storage_account_url_with_sas}"\n\n# optional environment variables with defaults listed\n\n# network and identity\n# export BATCH_POOL_SUBNET_ID=\n# export BATCH_MANAGED_IDENTITY_RESOURCE_ID=\n# export BATCH_MANAGED_IDENTITY_CLIENT_ID=\n\n# if unset, default is "classic"\n# export BATCH_NODE_COMMUNICATION_SIMPLIFIED=true\n\n# don\'t recommend changing\n# export BATCH_POOL_IMAGE_PUBLISHER=microsoft-azure-batch\n# export BATCH_POOL_IMAGE_OFFER=ubuntu-server-container\n# export BATCH_POOL_IMAGE_SKU=20-04-lts\n# export BATCH_POOL_RESOURCE_FILE_PREFIX=resource-files\n\n# export BATCH_POOL_VM_CONTAINER_IMAGE=ubuntu\n# export BATCH_POOL_VM_NODE_AGENT_SKU_ID="batch.node.ubuntu 20.04"\n\n# can be used to add a startup task to the batch nodes formatted as an sas url to a bash script\n# export BATCH_NODE_START_TASK_SAS_URL=\n\n# can be useful to alter task distribution across nodes\n\n# export BATCH_POOL_VM_SIZE=Standard_D2_v3\n# export BATCH_NODE_FILL_TYPE=spread\n# export BATCH_POOL_NODE_COUNT=1\n# export BATCH_TASKS_PER_NODE=1\n\n# container registry configuration to pull container image from custom registry\n# export BATCH_CONTAINER_REGISTRY_URL=\n# export BATCH_CONTAINER_REGISTRY_USER=\n# export BATCH_CONTAINER_REGISTRY_PASS=\n\nsnakemake \\\n --jobs 3 \\\n -rpf --verbose --default-remote-prefix $AZ_BLOB_PREFIX \\\n --use-conda \\\n --default-remote-provider AzBlob \\\n --envvars AZ_BLOB_ACCOUNT_URL \\\n --az-batch \\\n --container-image snakemake/snakemake \\\n --az-batch-account-url $AZ_BATCH_ACCOUNT_URL' as "console". Highlighting skipped.
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make[1]: Entering directory '/builddir/build/BUILD/snakemake-7.32.3/docs/_build/latex'
latexmk -pdf -dvi- -ps- 'Snakemake.tex'
Rc files read:
/etc/latexmkrc
latexmkrc
Latexmk: This is Latexmk, John Collins, 4 Apr. 2023. Version 4.80.
No existing .aux file, so I'll make a simple one, and require run of *latex.
Latexmk: applying rule 'pdflatex'...
Rule 'pdflatex': Reasons for rerun
Category 'other':
Rerun of 'pdflatex' forced or previously required
------------
Run number 1 of rule 'pdflatex'
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------------
Running 'xelatex -recorder "Snakemake.tex"'
------------
This is XeTeX, Version 3.141592653-2.6-0.999995 (TeX Live 2023) (preloaded format=xelatex)
restricted \write18 enabled.
entering extended mode
(./Snakemake.tex
LaTeX2e <2022-11-01> patch level 1
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Chapter 1.
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Chapter 2.
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Chapter 3.
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Chapter 4.
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[]\TU/FreeSerif(0)/m/n/10 There is a lot going on here, so let’s unpack it: thi
s creates an [][]auto-scaling Kubernetes cluster[][]
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[]\TU/FreeSerif(0)/m/n/10 Target particular jobs by RULE:WILDCARD1=VALUE,WILDCA
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\TU/FreeSerif(0)/m/n/10 Snakemake tracks the code that was used to create your
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[]\TU/FreeSerif(0)/m/n/10 provide temporary IPYTHONDIR for notebook execution i
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(see the transcript file for additional information)
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(/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty))
(./sphinxlatexstyleheadings.sty
(/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty))
(./sphinxlatexstyletext.sty) (./sphinxlatexobjects.sty))
(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
(/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty
(/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty
(/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty))
(/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty)
(/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty)
(/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty)
(/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty)
(/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def)
(/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty)
(/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def)
(/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)
(/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty
(/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty))
(/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty))
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/hxetex.def
(/usr/share/texlive/texmf-dist/tex/generic/stringenc/stringenc.sty)
(/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty)
(/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty)))
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty)
(./sphinxmessages.sty)
Writing index file Snakemake.idx
(./Snakemake.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
*geometry* driver: auto-detecting
*geometry* detected driver: xetex
(./Snakemake.out) (./Snakemake.out)
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(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1] [2]
(./Snakemake.toc) [1] [2] [1] [2]
Chapter 1.
[3] [4]
Chapter 2.
[5] [6]
Chapter 3.
[7] [8]
Chapter 4.
[9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] [21] [22] [23]
[24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38]
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[]|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_IMAGE_PUBLISHER|
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[]|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_VM_CONTAINER_IMAGE|
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[]|\TU/FreeSerif(0)/m/n/10 BATCH_POOL_VM_NODE_AGENT_SKU_ID|
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[]|\TU/FreeSerif(0)/m/n/10 BATCH_NODE_COMMUNICATION_SIMPLIFIED|
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[]|\TU/FreeSerif(0)/m/n/10 BATCH_MANAGED_IDENTITY_RESOURCE_ID|
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[]|\TU/FreeSerif(0)/m/n/10 BATCH_MANAGED_IDENTITY_CLIENT_ID|
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[]|\TU/FreeSerif(0)/m/n/10 BATCH_CONTAINER_REGISTRY_URL|
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[]|\TU/FreeSerif(0)/m/n/10 BATCH_CONTAINER_REGISTRY_USER|
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[47]
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\TU/FreeSerif(0)/m/n/10 The azure batch executor supports autoscaling of the ba
tch nodes by including the flag
[51] [52]
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[]\TU/FreeSerif(0)/m/n/10 There is a lot going on here, so let’s unpack it: thi
s creates an [][]auto-scaling Kubernetes cluster[][]
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[]\TU/FreeSerif(0)/m/n/10 Target particular jobs by RULE:WILDCARD1=VALUE,WILDCA
RD2=VALUE,…
[89] [90] [91] [92] [93]
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[]\TU/FreeSerif(0)/m/n/10 Additional tibanna config e.g. –tibanna-config spot_i
nstance=true sub-
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[]\TU/FreeSans(0)/m/n/10 Snakemake re-
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[]\TU/FreeMono(0)/m/n/10 slurm_partition|
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[][]\TU/FreeMono(0)/m/n/10 c\TU/FreeSerif(0)/m/n/10 /[][]\TU/FreeMono(0)/m/n/10
cpus[]per[]task|
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[]\TU/FreeSerif(0)/m/n/10 The azure batch executor supports autoscaling of the
batch nodes by including the flag
[108] [109]
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[]|\TU/FreeSerif(0)/m/n/10 Snakemake gets the status of panoptes.
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\TU/FreeSerif(0)/m/n/10 Snakemake continues to run if the status
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[]|\TU/FreeMono(0)/m/n/10 /
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\TU/FreeMono(0)/m/n/10 update_workflow_status|
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\TU/FreeSerif(0)/m/n/10 Snakemake tracks the code that was used to create your
files. In combination with [][]\TU/FreeMono(0)/m/n/10 summary \TU/FreeSerif(0)/
m/n/10 or
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[]\TU/FreeSerif(0)/m/n/10 When used in conjunction with \TU/FreeMono(0)/m/n/10
NCBI.RemoteProvider().search()\TU/FreeSerif(0)/m/n/10 , Snakemake and \TU/FreeM
ono(0)/m/n/10 NCBI.
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[]\TU/FreeSerif(0)/m/n/10 The default location for the configuration file is \T
U/FreeMono(0)/m/n/10 ~/.irods/irods_environment.json\TU/FreeSerif(0)/m/n/10 . T
he \TU/FreeMono(0)/m/n/10 Re-
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\TU/FreeMono(0)/m/n/10 moteProvider() \TU/FreeSerif(0)/m/n/10 class accepts the
parameter \TU/FreeMono(0)/m/n/10 irods_env_file \TU/FreeSerif(0)/m/n/10 where
an alternative path to the
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\TU/FreeSerif(0)/m/n/10 If you need to access a deposition with restricted acce
ss, you have to additionally provide a \TU/FreeMono(0)/m/n/10 re-
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[]\TU/FreeSerif(0)/m/n/10 First, we load a local configuration file. Next, we d
efine the module \TU/FreeMono(0)/m/n/10 dna_seq \TU/FreeSerif(0)/m/n/10 to be l
oaded from
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[]\TU/FreeSerif(0)/m/n/10 Provide hyperlink targets, at least for the first two
section levels. For this, use the format
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[]\TU/FreeSerif(0)/m/n/10 provide temporary IPYTHONDIR for notebook execution i
n order to avoid race conditions in
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[]\TU/FreeSerif(0)/m/n/10 Allow URL to local git repo with wrapper directive (\
TU/FreeMono(0)/m/n/10 git+file:///path/to/your/repo/
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[]\TU/FreeSerif(0)/m/n/10 When submitting cluster jobs (either through [][]\TU/
FreeMono(0)/m/n/10 cluster \TU/FreeSerif(0)/m/n/10 or [][]\TU/FreeMono(0)/m/n/1
0 drmaa\TU/FreeSerif(0)/m/n/10 ), you can now use
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[282] (./Snakemake.aux) )
(see the transcript file for additional information)
Output written on Snakemake.pdf (286 pages).
Transcript written on Snakemake.log.
Latexmk: Getting log file 'Snakemake.log'
Latexmk: Examining 'Snakemake.fls'
Latexmk: Examining 'Snakemake.log'
Latexmk: Index file 'Snakemake.idx' was written
Latexmk: Log file says output to 'Snakemake.pdf'
Latexmk: Summary of warnings from last run of *latex:
=====Latex reported missing or unavailable character(s).
=====See log file for details.
Latexmk: All targets () are up-to-date
make[1]: Leaving directory '/builddir/build/BUILD/snakemake-7.32.3/docs/_build/latex'
Latexmk: Missing input file 'Snakemake.toc' (or dependence on it) from following:
No file Snakemake.toc.
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No file Snakemake.ind.
Latexmk: ====List of undefined refs and citations:
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+ RPM_EC=0
++ jobs -p
+ exit 0
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64
++ dirname /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd snakemake-7.32.3
++ ls /builddir/build/BUILD/snakemake-7.32.3/pyproject-wheeldir/snakemake-7.32.3-py3-none-any.whl
++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/'
++ xargs basename --multiple
+ specifier=snakemake==7.32.3
+ TMPDIR=/builddir/build/BUILD/snakemake-7.32.3/.pyproject-builddir
+ /usr/bin/python3 -m pip install --root /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64 --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/snakemake-7.32.3/pyproject-wheeldir snakemake==7.32.3
make: Entering directory '/builddir/build/BUILD/snakemake-7.32.3/docs'
pdflatex finished; the PDF files are in _build/latex.
make: Leaving directory '/builddir/build/BUILD/snakemake-7.32.3/docs'
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.zpPVzF
Using pip 23.2.1 from /usr/lib/python3.12/site-packages/pip (python 3.12)
Looking in links: /builddir/build/BUILD/snakemake-7.32.3/pyproject-wheeldir
Processing ./pyproject-wheeldir/snakemake-7.32.3-py3-none-any.whl
Installing collected packages: snakemake
Creating /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/bin
changing mode of /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/bin/snakemake to 755
changing mode of /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/bin/snakemake-bash-completion to 755
Successfully installed snakemake-7.32.3
+ '[' -d /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/bin ']'
+ '[' -z sP ']'
+ shebang_flags=-kasP
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pathfix.py -pni /usr/bin/python3 -kasP /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/bin/snakemake /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/bin/snakemake-bash-completion
/builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/bin/snakemake: updating
/builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/bin/snakemake-bash-completion: updating
+ rm -rfv /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/bin/__pycache__
+ rm -f /builddir/build/BUILD/snakemake-7.32.3-1.fc40.x86_64-pyproject-ghost-distinfo
+ site_dirs=()
+ '[' -d /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/lib/python3.12/site-packages ']'
+ site_dirs+=("/usr/lib/python3.12/site-packages")
+ '[' /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/lib64/python3.12/site-packages '!=' /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/lib/python3.12/site-packages ']'
+ '[' -d /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/lib64/python3.12/site-packages ']'
+ for site_dir in ${site_dirs[@]}
+ for distinfo in /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64$site_dir/*.dist-info
+ echo '%ghost /usr/lib/python3.12/site-packages/snakemake-7.32.3.dist-info'
+ sed -i s/pip/rpm/ /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-7.32.3.dist-info/INSTALLER
+ PYTHONPATH=/usr/lib/rpm/redhat
+ /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64 --record /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-7.32.3.dist-info/RECORD --output /builddir/build/BUILD/snakemake-7.32.3-1.fc40.x86_64-pyproject-record
+ rm -fv /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-7.32.3.dist-info/RECORD
removed '/builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-7.32.3.dist-info/RECORD'
+ rm -fv /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-7.32.3.dist-info/REQUESTED
removed '/builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/lib/python3.12/site-packages/snakemake-7.32.3.dist-info/REQUESTED'
++ wc -l /builddir/build/BUILD/snakemake-7.32.3-1.fc40.x86_64-pyproject-ghost-distinfo
++ cut -f1 '-d '
+ lines=1
+ '[' 1 -ne 1 ']'
+ RPM_PERCENTAGES_COUNT=2
+ /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/snakemake-7.32.3-1.fc40.x86_64-pyproject-files --output-modules /builddir/build/BUILD/snakemake-7.32.3-1.fc40.x86_64-pyproject-modules --buildroot /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64 --sitelib /usr/lib/python3.12/site-packages --sitearch /usr/lib64/python3.12/site-packages --python-version 3.12 --pyproject-record /builddir/build/BUILD/snakemake-7.32.3-1.fc40.x86_64-pyproject-record --prefix /usr snakemake
+ install -d /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/share/man/man1
+ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/bin
+ PYTHONPATH=/builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/lib/python3.12/site-packages
+ help2man --no-info '--name=Metapackage for snakemake: azure extras' snakemake
+ install -d /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/share/bash-completion/completions
+ touch Snakefile
+ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/bin
+ PYTHONPATH=/builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/lib/python3.12/site-packages
+ snakemake --bash-completion
+ install -t /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/share/nano -D -m 0644 -p misc/nano/syntax/snakemake.nanorc
+ install -d /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/share/vim/vimfiles
+ cp -vrp misc/vim/README.md misc/vim/ftdetect misc/vim/ftplugin misc/vim/syntax /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/share/vim/vimfiles
'misc/vim/README.md' -> '/builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/share/vim/vimfiles/README.md'
'misc/vim/ftdetect' -> '/builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/share/vim/vimfiles/ftdetect'
'misc/vim/ftdetect/snakemake.vim' -> '/builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/share/vim/vimfiles/ftdetect/snakemake.vim'
'misc/vim/ftplugin' -> '/builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/share/vim/vimfiles/ftplugin'
'misc/vim/ftplugin/snakemake' -> '/builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/share/vim/vimfiles/ftplugin/snakemake'
'misc/vim/ftplugin/snakemake/folding.vim' -> '/builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/share/vim/vimfiles/ftplugin/snakemake/folding.vim'
'misc/vim/ftplugin/snakemake/sections.vim' -> '/builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/share/vim/vimfiles/ftplugin/snakemake/sections.vim'
'misc/vim/syntax' -> '/builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/share/vim/vimfiles/syntax'
'misc/vim/syntax/snakemake.vim' -> '/builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/share/vim/vimfiles/syntax/snakemake.vim'
+ find /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/share/vim/vimfiles -type f -name 'README.*' -print -delete
/builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/share/vim/vimfiles/README.md
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 7.32.3-1.fc40 --unique-debug-suffix -7.32.3-1.fc40.x86_64 --unique-debug-src-base snakemake-7.32.3-1.fc40.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/snakemake-7.32.3
find-debuginfo: starting
Extracting debug info from 0 files
Creating .debug symlinks for symlinks to ELF files
find: 'debug': No such file or directory
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
Bytecompiling .py files below /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/lib/python3.12 using python3.12
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.qJDd99
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd snakemake-7.32.3
+ k='not test_lint[long_run-positive]'
+ k='not test_lint[long_run-positive] and not test_tibanna'
+ k='not test_lint[long_run-positive] and not test_tibanna and not test_tes'
+ k='not test_lint[long_run-positive] and not test_tibanna and not test_tes and not test_slurm_'
+ ignore=' --ignore=tests/test_google_lifesciences.py'
+ ignore=' --ignore=tests/test_google_lifesciences.py --ignore-glob=tests/test_conda_python_3_7_script/*'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ PATH=/builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
+ PYTHONPATH=/builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/lib64/python3.12/site-packages:/builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/lib/python3.12/site-packages
+ PYTHONDONTWRITEBYTECODE=1
+ PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/snakemake-7.32.3/.pyproject-builddir'
+ PYTEST_XDIST_AUTO_NUM_WORKERS=2
+ /usr/bin/pytest -v -k 'not test_lint[long_run-positive] and not test_tibanna and not test_tes and not test_slurm_' --ignore=tests/test_google_lifesciences.py '--ignore-glob=tests/test_conda_python_3_7_script/*'
============================= test session starts ==============================
platform linux -- Python 3.12.0rc1, pytest-7.3.2, pluggy-1.2.0 -- /usr/bin/python3
cachedir: .pytest_cache
rootdir: /builddir/build/BUILD/snakemake-7.32.3
plugins: requests-mock-1.10.0
collecting ... collected 66 items / 8 deselected / 58 selected
tests/test_azure_batch_executor.py::test_az_batch_executor SKIPPED (...) [ 1%]
tests/test_expand.py::test_simple_expand PASSED [ 3%]
tests/test_expand.py::test_allow_missing PASSED [ 5%]
tests/test_io.py::test_wildcard_regex PASSED [ 6%]
tests/test_io.py::test_expand PASSED [ 8%]
tests/test_kubernetes.py::test_kubernetes_plain SKIPPED (Skipping GC...) [ 10%]
tests/test_kubernetes.py::test_kubernetes_conda SKIPPED (Skipping GC...) [ 12%]
tests/test_kubernetes.py::test_kubernetes_singularity SKIPPED (Skipp...) [ 13%]
tests/test_kubernetes.py::test_kubernetes_conda_singularity SKIPPED [ 15%]
tests/test_kubernetes.py::test_issue1041 SKIPPED (Skipping GCLOUD te...) [ 17%]
tests/test_linting.py::test_lint[version-positive] PASSED [ 18%]
tests/test_linting.py::test_lint[version-negative] PASSED [ 20%]
tests/test_linting.py::test_lint[tab_usage-positive] PASSED [ 22%]
tests/test_linting.py::test_lint[tab_usage-negative] PASSED [ 24%]
tests/test_linting.py::test_lint[singularity-positive] PASSED [ 25%]
tests/test_linting.py::test_lint[singularity-negative] PASSED [ 27%]
tests/test_linting.py::test_lint[path_add-positive] PASSED [ 29%]
tests/test_linting.py::test_lint[path_add-negative] PASSED [ 31%]
tests/test_linting.py::test_lint[params_prefix-positive] PASSED [ 32%]
tests/test_linting.py::test_lint[params_prefix-negative] PASSED [ 34%]
tests/test_linting.py::test_lint[not_used_params-positive] PASSED [ 36%]
tests/test_linting.py::test_lint[not_used_params-negative] PASSED [ 37%]
tests/test_linting.py::test_lint[mixed_func_and_rules-positive] PASSED [ 39%]
tests/test_linting.py::test_lint[mixed_func_and_rules-negative] PASSED [ 41%]
tests/test_linting.py::test_lint[missing_software_definition-positive] PASSED [ 43%]
tests/test_linting.py::test_lint[missing_software_definition-negative] PASSED [ 44%]
tests/test_linting.py::test_lint[long_run-negative] PASSED [ 46%]
tests/test_linting.py::test_lint[log_directive-positive] PASSED [ 48%]
tests/test_linting.py::test_lint[log_directive-negative] PASSED [ 50%]
tests/test_linting.py::test_lint[iofile_by_index-positive] PASSED [ 51%]
tests/test_linting.py::test_lint[iofile_by_index-negative] PASSED [ 53%]
tests/test_linting.py::test_lint[envvars-positive] PASSED [ 55%]
tests/test_linting.py::test_lint[envvars-negative] PASSED [ 56%]
tests/test_linting.py::test_lint[dynamic-positive] PASSED [ 58%]
tests/test_linting.py::test_lint[dynamic-negative] PASSED [ 60%]
tests/test_linting.py::test_lint[absolute_paths-positive] PASSED [ 62%]
tests/test_linting.py::test_lint[absolute_paths-negative] PASSED [ 63%]
tests/test_persistence.py::TestCleanupContainers::test_one_unrequired_container_gets_removed PASSED [ 65%]
tests/test_schema.py::test_config PASSED [ 67%]
tests/test_schema.py::test_config_ref PASSED [ 68%]
tests/test_schema.py::test_dataframe PASSED [ 70%]
tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_with_shebang_and_second_manifest PASSED [ 72%]
tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_not_at_start_with_shebang PASSED [ 74%]
tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_not_at_start_without_shebang PASSED [ 75%]
tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_with_empty_line_without_shebang PASSED [ 77%]
tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_is_case_insensitive PASSED [ 79%]
tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_spacing_has_no_impact PASSED [ 81%]
tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_formatting_not_touched_even_if_wrong PASSED [ 82%]
tests/test_script.py::TestRustScriptExtractManifest::test_single_line_manifest_spelt_wrong PASSED [ 84%]
tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_with_shebang PASSED [ 86%]
tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_without_shebang PASSED [ 87%]
tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_spacing_around_language PASSED [ 89%]
tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_has_non_cargo_block PASSED [ 91%]
tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_missing_closing_fence PASSED [ 93%]
tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_not_in_first_comment_block PASSED [ 94%]
tests/test_script.py::TestRustScriptExtractManifest::test_code_block_manifest_with_outer_line_doc_comment PASSED [ 96%]
tests/test_script.py::TestBashEncoder::test_named_list_one_named_one_str PASSED [ 98%]
tests/test_script.py::TestBashEncoder::test_named_list_named_is_list PASSED [100%]
=============================== warnings summary ===============================
../../../../usr/lib/python3.12/site-packages/pytz/tzinfo.py:27
/usr/lib/python3.12/site-packages/pytz/tzinfo.py:27: DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.fromtimestamp(timestamp, datetime.UTC).
_epoch = datetime.utcfromtimestamp(0)
tests/test_schema.py::test_config
/usr/lib/python3.12/site-packages/pkg_resources/__init__.py:121: DeprecationWarning: pkg_resources is deprecated as an API
warnings.warn("pkg_resources is deprecated as an API", DeprecationWarning)
tests/test_schema.py::test_config
tests/test_schema.py::test_config
tests/test_schema.py::test_config
tests/test_schema.py::test_config
tests/test_schema.py::test_config
tests/test_schema.py::test_config
/usr/lib/python3.12/site-packages/pkg_resources/__init__.py:2870: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('google')`.
Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
declare_namespace(pkg)
tests/test_schema.py::test_config
tests/test_schema.py::test_config
/usr/lib/python3.12/site-packages/pkg_resources/__init__.py:2870: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('google.cloud')`.
Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
declare_namespace(pkg)
tests/test_schema.py::test_config
tests/test_schema.py::test_config
tests/test_schema.py::test_config
/usr/lib/python3.12/site-packages/pkg_resources/__init__.py:2349: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('google')`.
Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
declare_namespace(parent)
tests/test_schema.py::test_config
/usr/lib/python3.12/site-packages/pkg_resources/__init__.py:2870: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('google.logging')`.
Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
declare_namespace(pkg)
tests/test_schema.py::test_config
tests/test_schema.py::test_config
tests/test_schema.py::test_config
tests/test_schema.py::test_config
/usr/lib/python3.12/site-packages/pkg_resources/__init__.py:2870: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('sphinxcontrib')`.
Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
declare_namespace(pkg)
tests/test_schema.py::test_config
/usr/lib/python3.12/site-packages/google/rpc/__init__.py:20: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('google.rpc')`.
Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
pkg_resources.declare_namespace(__name__)
tests/test_schema.py::test_config
tests/test_schema.py::test_config
<frozen importlib._bootstrap>:400: DeprecationWarning: Using PyType_Spec with metaclasses that have custom tp_new is deprecated and will no longer be allowed in Python 3.14.
tests/test_schema.py::test_config
/usr/lib64/python3.12/site-packages/google/protobuf/internal/well_known_types.py:92: DeprecationWarning: datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.fromtimestamp(timestamp, datetime.UTC).
_EPOCH_DATETIME = datetime.utcfromtimestamp(0)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
========== 52 passed, 6 skipped, 8 deselected, 22 warnings in 17.72s ===========
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: snakemake-7.32.3-1.fc40.noarch
Provides: python3.12dist(snakemake) = 7.32.3 python3dist(snakemake) = 7.32.3 snakemake = 7.32.3-1.fc40 vim-snakemake = 7.32.3-1.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: (python3.12dist(jinja2) < 4~~ with python3.12dist(jinja2) >= 3) (python3.12dist(yte) < 2~~ with python3.12dist(yte) >= 1.5.1) /usr/bin/python3 python(abi) = 3.12 python3.12dist(appdirs) python3.12dist(configargparse) python3.12dist(connection-pool) >= 0.0.3 python3.12dist(datrie) python3.12dist(docutils) python3.12dist(gitpython) python3.12dist(humanfriendly) python3.12dist(jsonschema) python3.12dist(nbformat) python3.12dist(packaging) python3.12dist(psutil) python3.12dist(pulp) >= 2 python3.12dist(pyyaml) python3.12dist(requests) python3.12dist(reretry) python3.12dist(smart-open) >= 3 python3.12dist(stopit) python3.12dist(tabulate) python3.12dist(throttler) python3.12dist(toposort) >= 1.10 python3.12dist(wrapt)
Processing files: snakemake-doc-7.32.3-1.fc40.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.P7o9Fj
+ umask 022
+ cd /builddir/build/BUILD
+ cd snakemake-7.32.3
+ DOCDIR=/builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/share/doc/snakemake-doc
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/share/doc/snakemake-doc
+ cp -pr /builddir/build/BUILD/snakemake-7.32.3/CHANGELOG.md /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/share/doc/snakemake-doc
+ cp -pr /builddir/build/BUILD/snakemake-7.32.3/CODE_OF_CONDUCT.md /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/share/doc/snakemake-doc
+ cp -pr /builddir/build/BUILD/snakemake-7.32.3/README.md /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/share/doc/snakemake-doc
+ cp -pr /builddir/build/BUILD/snakemake-7.32.3/README-nano.md /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/share/doc/snakemake-doc
+ cp -pr /builddir/build/BUILD/snakemake-7.32.3/README-vim.md /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/share/doc/snakemake-doc
+ cp -pr /builddir/build/BUILD/snakemake-7.32.3/docs/_build/latex/Snakemake.pdf /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/share/doc/snakemake-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.aUIs27
+ umask 022
+ cd /builddir/build/BUILD
+ cd snakemake-7.32.3
+ LICENSEDIR=/builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/share/licenses/snakemake-doc
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/share/licenses/snakemake-doc
+ cp -pr /builddir/build/BUILD/snakemake-7.32.3/LICENSE.md /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64/usr/share/licenses/snakemake-doc
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: snakemake-doc = 7.32.3-1.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: snakemake+reports-7.32.3-1.fc40.noarch
Provides: python3.12dist(snakemake[reports]) = 7.32.3 python3dist(snakemake[reports]) = 7.32.3 snakemake+reports = 7.32.3-1.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: python(abi) = 3.12 python3.12dist(pygments)
Processing files: snakemake+messaging-7.32.3-1.fc40.noarch
Provides: python3.12dist(snakemake[messaging]) = 7.32.3 python3dist(snakemake[messaging]) = 7.32.3 snakemake+messaging = 7.32.3-1.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: python(abi) = 3.12 python3.12dist(slacker)
Processing files: snakemake+google-cloud-7.32.3-1.fc40.noarch
Provides: python3.12dist(snakemake[google-cloud]) = 7.32.3 python3dist(snakemake[google-cloud]) = 7.32.3 snakemake+google-cloud = 7.32.3-1.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: python(abi) = 3.12 python3.12dist(google-api-python-client) python3.12dist(google-cloud-storage) python3.12dist(google-crc32c) python3.12dist(oauth2client)
Processing files: snakemake+azure-7.32.3-1.fc40.noarch
Provides: python3.12dist(snakemake[azure]) = 7.32.3 python3dist(snakemake[azure]) = 7.32.3 snakemake+azure = 7.32.3-1.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: python(abi) = 3.12 python3.12dist(azure-batch) python3.12dist(azure-core) python3.12dist(azure-identity) python3.12dist(azure-mgmt-batch) python3.12dist(azure-storage-blob)
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64
Wrote: /builddir/build/SRPMS/snakemake-7.32.3-1.fc40.src.rpm
Wrote: /builddir/build/RPMS/snakemake-doc-7.32.3-1.fc40.noarch.rpm
Wrote: /builddir/build/RPMS/snakemake+reports-7.32.3-1.fc40.noarch.rpm
Wrote: /builddir/build/RPMS/snakemake+messaging-7.32.3-1.fc40.noarch.rpm
Wrote: /builddir/build/RPMS/snakemake+google-cloud-7.32.3-1.fc40.noarch.rpm
Wrote: /builddir/build/RPMS/snakemake+azure-7.32.3-1.fc40.noarch.rpm
Wrote: /builddir/build/RPMS/snakemake-7.32.3-1.fc40.noarch.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.xmSc0y
+ umask 022
+ cd /builddir/build/BUILD
+ cd snakemake-7.32.3
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/snakemake-7.32.3-1.fc40.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.Y8bQIE
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf /builddir/build/BUILD/snakemake-7.32.3-SPECPARTS
+ rm -rf snakemake-7.32.3 snakemake-7.32.3.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild snakemake-7.32.3-1.fc40.src.rpm
Finish: build phase for snakemake-7.32.3-1.fc40.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1692102139.323735/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-x86_64-1692102139.323735/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-x86_64-1692102139.323735/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/snakemake-7.32.3-1.fc40.src.rpm) Config(child) 3 minutes 35 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool