Mock Version: 4.1
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/bout++.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1688215987.003828/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f276ccc3c10>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3uiygge0:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3uiygge0:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '9011233b823f4adfb4e93c922c89ceed', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1688215987.003828/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3uiygge0:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs  --target x86_64 --nodeps /builddir/build/SPECS/bout++.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1688169600
Wrote: /builddir/build/SRPMS/bout++-5.0.0-6.fc39.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb  --target x86_64 --nodeps /builddir/build/SPECS/bout++.spec'], chrootPath='/var/lib/mock/fedora-rawhide-x86_64-1688215987.003828/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x7f276ccc3c10>timeout=0uid=1000gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3uiygge0:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=True)
Using nspawn with args ['--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3uiygge0:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'a7d3c77d59a3447e8ade26edf46d3631', '-D', '/var/lib/mock/fedora-rawhide-x86_64-1688215987.003828/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--rlimit=RLIMIT_NOFILE=10240', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3uiygge0:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb  --target x86_64 --nodeps /builddir/build/SPECS/bout++.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1688169600
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.1VebVG
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf BOUT++-v5.0.0.dev10626+gd935fa1ea
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/BOUT++-v5.0.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd BOUT++-v5.0.0.dev10626+gd935fa1ea
+ /usr/bin/mkdir -p SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/2659.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/2661.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/2664.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/2678.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/petsc_318_compat.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/2693.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/fmt10.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ sed -e 's/html_theme = "sphinx_book_theme"/html_theme = "sphinxdoc"/' -i manual/sphinx/conf.py
+ rm -rf externalpackages/mpark.variant/
+ mkdir -p externalpackages/mpark.variant/include/
+ rm -rf tools/pylib/boutdata
+ rm -rf tools/pylib/boututils
++ find -L tools/pylib/ -type f
++ grep -v _boutcore_build
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/rms.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/read_inp.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/read_cxx.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/pb_present.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/pb_nonlinear.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/pb_draw.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/pb_corral.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/grate2.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/basic_info.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/__init__.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/post_bout/ListDict.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/boutconfig/__init__.py.in
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/boutconfig/__init__.py.cin
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutpp.pyx.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/setup.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/scan_enums.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/resolve_enum_inv.pyx.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/resolve_enum.pxd.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/other_enums.hxx
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/helper.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/helper.h.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/helper.cxx.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/geninput.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/generate.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/debug_setup.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/debug_helper.hxx
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutpp_openmpi_compat.hxx
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutpp.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutexception_helper.hxx
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutexception_helper.cxx
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/boutcpp.pxd.jinja
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/bout_options.pxd
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/backend.py
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/Makefile
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/GENERATION.md
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/CMakeLists.txt
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/_boutpp_build/.gitignore
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/README.md
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/Makefile
+ for f in $(find -L tools/pylib/ -type f | grep -v _boutcore_build)
+ sed -i '/^#!\//d' tools/pylib/.gitignore
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.B0ZTQp
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd BOUT++-v5.0.0.dev10626+gd935fa1ea
+ export CC=mpicc
+ CC=mpicc
+ export CXX=mpicxx
+ CXX=mpicxx
+ for mpi in mpich openmpi
+ mkdir build_mpich
+ for mpi in mpich openmpi
+ mkdir build_openmpi
+ for mpi in mpich openmpi
+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/mpich-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/mpich-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64
+ eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH;
MPI_COMPILER=mpich-x86_64; export MPI_COMPILER;
MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/mpich-x86_64; export MPI_INCLUDE;
MPI_MAN=/usr/share/man/mpich-x86_64; export MPI_MAN;
MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH;
_LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64; export _LMFILES_;
LOADEDMODULES=mpi/mpich-x86_64; export LOADEDMODULES;
PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/mpich; export MPI_PYTHON3_SITEARCH;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR;
MPI_HOME=/usr/lib64/mpich; export MPI_HOME;
__MODULES_LMCONFLICT=mpi/mpich-x86_64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SYSCONFIG=/etc/mpich-x86_64; export MPI_SYSCONFIG;
MPI_SUFFIX=_mpich; export MPI_SUFFIX;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH;
MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB;
PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN;
test 0;'
++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib
++ export LD_LIBRARY_PATH
++ MPI_COMPILER=mpich-x86_64
++ export MPI_COMPILER
++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/mpich-x86_64
++ export MPI_INCLUDE
++ MPI_MAN=/usr/share/man/mpich-x86_64
++ export MPI_MAN
++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON_SITEARCH
++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64
++ export _LMFILES_
++ LOADEDMODULES=mpi/mpich-x86_64
++ export LOADEDMODULES
++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/mpich
++ export MPI_PYTHON3_SITEARCH
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich
++ export MPI_FORTRAN_MOD_DIR
++ MPI_HOME=/usr/lib64/mpich
++ export MPI_HOME
++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SYSCONFIG=/etc/mpich-x86_64
++ export MPI_SYSCONFIG
++ MPI_SUFFIX=_mpich
++ export MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON2_SITEARCH
++ MPI_LIB=/usr/lib64/mpich/lib
++ export MPI_LIB
++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/mpich/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=mpicc
+ export CC
+ CXX=mpicxx
+ export CXX
+ /usr/bin/cmake -S . -B build_mpich -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBOUT_USE_FFTW=ON -DBOUT_USE_NETCDF=ON -DBOUT_USE_SCOREP=OFF -DBOUT_USE_SYSTEM_MPARK_VARIANT=ON -DBOUT_USE_LAPACK=ON -DBOUT_USE_NLS=ON -DBOUT_USE_SYSTEM_FMT=ON -DBOUT_USE_UUID_SYSTEM_GENERATOR=ON -DCMAKE_INSTALL_PREFIX=/ -DCMAKE_INSTALL_LIBDIR=/usr/lib64/mpich/lib -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DCMAKE_INSTALL_INCLUDEDIR=/usr/include/mpich-x86_64/bout++/ -DCMAKE_INSTALL_DATAROOTDIR=/usr/share -DCMAKE_INSTALL_PYTHON_SITEARCH=/usr/lib64/python3.11/site-packages/mpich -DBOUT_BUILD_DOCS=ON -DBOUT_USE_PETSC=ON -DBOUT_USE_SUNDIALS=ON
-- The CXX compiler identification is GNU 13.1.1
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/lib64/mpich/bin/mpicxx - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Configuring BOUT++ version 5.0.0
-- Found Python3: /usr/bin/python3.11 (found version "3.11.4") found components: Interpreter 
-- Could NOT find ClangFormat (missing: ClangFormat_BIN) 
Traceback (most recent call last):
  File "<string>", line 1, in <module>
ModuleNotFoundError: No module named 'zoidberg'
CMake Warning (dev) at CMakeLists.txt:373 (message):
  'src/field/generated_fieldops.cxx' will not be regenerated when you make
  changes to either 'src/field/gen_fieldops.py' or
  'src/field/gen_fieldops.jinja'.  This is because either Python3 or
  clang-format is missing (see above messages for more information) or
  BOUT_GENERATE_FIELDOPS is OFF (current value: OFF).  This warning is only
  important for BOUT++ developers and can otherwise be safely ignored.
This warning is for project developers.  Use -Wno-dev to suppress it.
-- Found Python: /usr/bin/python3.11 (found suitable version "3.11.4", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed 
-- Found Numpy: /usr/include (found version "1.24.3") 
-- Found Cython: TRUE (found version "0.29.35") 
-- Found Bash: /usr/bin/bash (found version "5.2.15") 
-- Building BOUT++ Python interface
-- Found MPI_CXX: /usr/lib64/mpich/bin/mpicxx (found version "4.0") 
-- Found MPI: TRUE (found version "4.0")  
-- Enable OpenMP: OFF
-- HYPRE support: OFF
-- Found PkgConfig: /usr/bin/pkg-config (found version "1.9.4") 
-- Checking for one of the modules 'PETSc>3.4.0;petsc>3.4.0'
-- Found PETSc: /usr/include/mpich-x86_64/petsc  
-- PETSc support: ON
-- Using external mpark.variant
-- Using external fmt
-- PVODE support: ON
-- Found netCDF: /usr/lib64/libnetcdf.so (found version "4.9.0") 
-- Found netCDFCxx version 4.3.1
-- Found netCDFCxx: /usr/lib64/libnetcdf_c++4.so (found version "4.3.1") 
-- NetCDF support: ON
-- Found FFTW: /usr/lib64/libfftw3.so  
-- FFTW support: ON
-- Looking for sgemm_
-- Looking for sgemm_ - not found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE  
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS: /usr/lib64/libflexiblas.so  
-- Looking for cheev_
-- Looking for cheev_ - found
-- Found LAPACK: /usr/lib64/libflexiblas.so;-lm;-ldl  
-- LAPACK support: ON
-- SLEPc support: OFF
-- SUNDIALS support: ON
-- Found Gettext: /usr/bin/msgmerge (found version "0.22") 
-- Found Intl: built in to C library  
-- libuuid not found, using fallback UUID generator
-- UUID_SYSTEM_GENERATOR: FALSE
-- Enable coverage: OFF
-- Git revision: Unknown
-- Performing Test HAS_FLAG__Wnull_dereference
-- Performing Test HAS_FLAG__Wnull_dereference - Success
-- Warning flag is supported by compiler: -Wnull-dereference
-- Found negative flag: -Wno-cast-function-type
   replaced with -Wcast-function-type
-- Performing Test HAS_FLAG__Wno_cast_function_type
-- Performing Test HAS_FLAG__Wno_cast_function_type - Success
-- Warning flag is supported by compiler: -Wno-cast-function-type
-- Runtime checking level: CHECK=2
-- Message stack: BOUT_USE_MSGSTACK=ON
-- Extra debug output: BOUT_USE_OUTPUT_DEBUG=OFF
-- Signal handling: BOUT_USE_SIGNAL=ON
-- Output coloring: BOUT_USE_COLOR=ON
-- Field name tracking: BOUT_USE_TRACK=ON
-- Signalling floating point exceptions: BOUT_USE_SIGFPE=OFF
-- Enable backtrace: BOUT_USE_BACKTRACE=ON
-- Performing Test HAS_PRETTY_FUNCTION
-- Performing Test HAS_PRETTY_FUNCTION - Success
-- Setting build type to 'RelWithDebInfo' as none was specified.
CMake Deprecation Warning at externalpackages/googletest/CMakeLists.txt:4 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.
  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.
-- The C compiler identification is GNU 13.1.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/lib64/mpich/bin/mpicc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
CMake Deprecation Warning at externalpackages/googletest/googlemock/CMakeLists.txt:45 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.
  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.
CMake Deprecation Warning at externalpackages/googletest/googletest/CMakeLists.txt:56 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.
  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.
-- Found Python: /usr/bin/python3.11 (found version "3.11.4") found components: Interpreter 
-- Not building test test-laplace-hypre3d, requirement not met: BOUT_HAS_HYPRE
-- Not building test test-laplacexy2-hypre, requirement not met: BOUT_HAS_HYPRE
-- Not building test test-slepc-solver, requirement not met: BOUT_HAS_SLEPC
-- Not building test MMS-advection-arakawa, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-central, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-upwind, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-weno3, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-diffusion2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-hw, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-laplace, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-advection, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-d2dx2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-d2dz2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-diffusion, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-fci, requirement not met: zoidberg_FOUND
-- Not building test MMS-time, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-time-petsc, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building example test_laplacexy_hypre, requirement not met: BOUT_HAS_HYPRE
-- Found Doxygen: /usr/bin/doxygen (found version "1.9.7") found components: doxygen dot 
-- Found Sphinx: /usr/bin/sphinx-build  
   --------------------------------
     BOUT++ Configuration Summary
   --------------------------------
   Bundled PVODE support    : ON
   PETSc support            : ON
   SLEPc support            : OFF
   SUNDIALS support         : ON
   HYPRE support            : OFF
   NetCDF support           : ON
   FFTW support             : ON
   LAPACK support           : ON
   OpenMP support           : OFF
   Natural language support : ON
   ScoreP support           : OFF
   System UUID generator    : FALSE
   Extra debug output       : OFF
   Runtime error check level: 2
   Signal handling          : ON
   Output coloring          : ON
   Field name tracking      : ON
   Floating point exceptions: OFF
   Backtrace enabled        : ON
   RAJA enabled             : OFF
   Umpire enabled           : OFF
   Caliper enabled          : OFF
   CUDA enabled             : OFF
   Metric type              : 2D
   Python API support       : ON
   Sanitizers enabled       : None
   === Python ===
   Make sure that the tools/pylib directory is in your PYTHONPATH
   e.g. by adding to your ~/.bashrc file
       export PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib:/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib:$PYTHONPATH
*** Now run `cmake --build /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich` to compile BOUT++ ***
-- Configuring done (4.7s)
-- Generating done (0.3s)
CMake Warning:
  Manually-specified variables were not used by the project:
    CMAKE_CXX_FLAGS_RELEASE
    CMAKE_C_FLAGS_RELEASE
    CMAKE_Fortran_FLAGS_RELEASE
    CMAKE_INSTALL_DO_STRIP
    INCLUDE_INSTALL_DIR
    LIB_INSTALL_DIR
    LIB_SUFFIX
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich
+ /usr/bin/cmake --build build_mpich -j2 --verbose
Change Dir: '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j2
/usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea -B/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/CMakeFiles /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich//CMakeFiles/progress.marks
/usr/bin/gmake  -f CMakeFiles/Makefile2 all
gmake[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
/usr/bin/gmake  -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend
/usr/bin/gmake  -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color="
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
/usr/bin/gmake  -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
/usr/bin/gmake  -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[  0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o -MF CMakeFiles/pvode.dir/source/cvode.cpp.o.d -o CMakeFiles/pvode.dir/source/cvode.cpp.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp
[  0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvpre_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -MF CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o.d -o CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/precon/pvbbdpre.cpp
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp: In function 'void* pvode::CVodeMalloc(integer, RhsFn, real, N_Vector, int, int, int, real*, void*, void*, FILE*, int, long int*, real*, void*)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:178:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'pvode::integer' {aka 'int'} [-Wformat=]
  178 | #define CVM             "CVodeMalloc-- "
      |                         ^
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:182:19: note: in expansion of macro 'CVM'
  182 | #define MSG_BAD_N CVM "N=%ld < 1 illegal.\n\n"
      |                   ^~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:496:17: note: in expansion of macro 'MSG_BAD_N'
  496 |     fprintf(fp, MSG_BAD_N, N);
      |                 ^~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:182:28: note: format string is defined here
  182 | #define MSG_BAD_N CVM "N=%ld < 1 illegal.\n\n"
      |                          ~~^
      |                            |
      |                            long int
      |                          %d
[  0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvpre_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o -MF CMakeFiles/pvpre.dir/precon/band.cpp.o.d -o CMakeFiles/pvpre.dir/precon/band.cpp.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/precon/band.cpp
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/precon/band.cpp: In function 'pvode::integer pvode::gbfa(real**, integer, integer, integer, integer, integer*)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/precon/band.cpp:189:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  189 |     if (swap = (l != k)) {
      |         ~~~~~^~~~~~~~~~
In function 'pvode::CVnlsFunctional(pvode::CVodeMemRec*)',
    inlined from 'pvode::CVnls(pvode::CVodeMemRec*, int)' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:1826:45,
    inlined from 'pvode::CVStep(pvode::CVodeMemRec*)' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:1358:18,
    inlined from 'pvode::CVode(void*, double, pvode::nvec_type*, double*, int)' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:882:19:
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:1876:49: warning: 'delp' may be used uninitialized [-Wmaybe-uninitialized]
 1876 |     if ((m==maxcor) || ((m >= 2) && (del > RDIV * delp)))
      |                                                 ^
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp: In function 'pvode::CVode(void*, double, pvode::nvec_type*, double*, int)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:1843:13: note: 'delp' was declared here
 1843 |   real del, delp, dcon;
      |             ^~~~
In function 'pvode::CVNewtonIteration(pvode::CVodeMemRec*)',
    inlined from 'pvode::CVnlsNewton(pvode::CVodeMemRec*, int)' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:1944:28,
    inlined from 'pvode::CVnls(pvode::CVodeMemRec*, int)' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:1827:41,
    inlined from 'pvode::CVStep(pvode::CVodeMemRec*)' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:1358:18,
    inlined from 'pvode::CVode(void*, double, pvode::nvec_type*, double*, int)' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:882:19:
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:2021:50: warning: 'delp' may be used uninitialized [-Wmaybe-uninitialized]
 2021 |     if ((m == maxcor) || ((m >= 2) && (del > RDIV*delp))) {
      |                                                  ^
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp: In function 'pvode::CVode(void*, double, pvode::nvec_type*, double*, int)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:1971:13: note: 'delp' was declared here
 1971 |   real del, delp, dcon;
      |             ^~~~
[  0%] Linking CXX shared library ../../lib/libpvpre.so
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/externalpackages/PVODE && /usr/bin/cmake -E cmake_link_script CMakeFiles/pvpre.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/pvpre.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libpvpre.so.1.0.0 -o ../../lib/libpvpre.so.1.0.0 CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o CMakeFiles/pvpre.dir/precon/band.cpp.o 
[  0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o -MF CMakeFiles/pvode.dir/source/nvector.cpp.o.d -o CMakeFiles/pvode.dir/source/nvector.cpp.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:429: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  429 |   #pragma omp parallel for reduction(+: sum)
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:485: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  485 |   #pragma omp parallel for reduction(+: sum)
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:543: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  543 |   #pragma omp parallel for reduction(+: sum)
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:565: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  565 |   #pragma omp parallel for reduction(+: sum)
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:583: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  583 |   #pragma omp parallel for
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:698: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  698 |   #pragma omp parallel for
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:714: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  714 |   #pragma omp parallel for
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:730: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  730 |   #pragma omp parallel for
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:745: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  745 |   #pragma omp parallel for
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:761: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  761 |   #pragma omp parallel for
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:777: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  777 |   #pragma omp parallel for
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:793: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  793 |   #pragma omp parallel for
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:809: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  809 |   #pragma omp parallel for
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:824: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  824 |     #pragma omp parallel for
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:831: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  831 |     #pragma omp parallel for
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:837: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  837 |   #pragma omp parallel for
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:850: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  850 |   #pragma omp parallel for
      | 
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/externalpackages/PVODE && /usr/bin/cmake -E cmake_symlink_library ../../lib/libpvpre.so.1.0.0 ../../lib/libpvpre.so.1.0.0 ../../lib/libpvpre.so
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[  0%] Built target pvpre
/usr/bin/gmake  -f CMakeFiles/mofiles.dir/build.make CMakeFiles/mofiles.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/CMakeFiles/mofiles.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
/usr/bin/gmake  -f CMakeFiles/mofiles.dir/build.make CMakeFiles/mofiles.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp: In function 'void pvode::N_VLinearSum(real, N_Vector, real, N_Vector, N_Vector)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:189:12: warning: unused variable 'v' [-Wunused-variable]
  189 |   N_Vector v, v1, v2;
      |            ^
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp: In function 'pvode::real pvode::N_VWL2Norm(N_Vector, N_Vector)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:533:14: warning: variable 'N_global' set but not used [-Wunused-but-set-variable]
  533 |   integer N, N_global;
      |              ^~~~~~~~
[  0%] Generating locale/es/libbout.gmo, _mo_file_es
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/locale/es/
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/locale/es/libbout.gmo /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/locale/es/libbout.po
[  2%] Generating locale/de/libbout.gmo, _mo_file_de
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/locale/de/
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/locale/de/libbout.gmo /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/locale/de/libbout.po
[  2%] Generating locale/fr/libbout.gmo, _mo_file_fr
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/locale/fr/
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/locale/fr/libbout.gmo /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/locale/fr/libbout.po
[  2%] Generating locale/zh_CN/libbout.gmo, _mo_file_zh_CN
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/locale/zh_CN/
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/locale/zh_CN/libbout.gmo /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/locale/zh_CN/libbout.po
[  5%] Generating locale/zh_TW/libbout.gmo, _mo_file_zh_TW
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/locale/zh_TW/
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/locale/zh_TW/libbout.gmo /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/locale/zh_TW/libbout.po
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[  5%] Built target mofiles
[  5%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o -MF CMakeFiles/pvode.dir/source/llnlmath.cpp.o.d -o CMakeFiles/pvode.dir/source/llnlmath.cpp.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/llnlmath.cpp
[  8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -MF CMakeFiles/pvode.dir/source/cvspgmr.cpp.o.d -o CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvspgmr.cpp
[  8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o -MF CMakeFiles/pvode.dir/source/spgmr.cpp.o.d -o CMakeFiles/pvode.dir/source/spgmr.cpp.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/spgmr.cpp
[  8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o -MF CMakeFiles/pvode.dir/source/iterativ.cpp.o.d -o CMakeFiles/pvode.dir/source/iterativ.cpp.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/iterativ.cpp
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/spgmr.cpp: In function 'int pvode::SpgmrSolve(SpgmrMem, void*, N_Vector, N_Vector, int, int, real, int, void*, N_Vector, N_Vector, ATimesFn, PSolveFn, real*, int*, int*)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/spgmr.cpp:159:8: warning: unused variable 's_r0_norm' [-Wunused-variable]
  159 |   real s_r0_norm, beta, rotation_product, r_norm, s_product, rho;
      |        ^~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/spgmr.cpp:328:17: warning: 'krydim' may be used uninitialized [-Wmaybe-uninitialized]
  328 |     for (i=1; i <= krydim; i++) yg[i]=ZERO;
      |               ~~^~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/spgmr.cpp:161:36: note: 'krydim' was declared here
  161 |   int i, j, k, l, l_plus_1, l_max, krydim, ier, ntries;
      |                                    ^~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/spgmr.cpp:386:3: warning: 'rho' may be used uninitialized [-Wmaybe-uninitialized]
  386 |   if (rho < beta) {
      |   ^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/spgmr.cpp:159:62: note: 'rho' was declared here
  159 |   real s_r0_norm, beta, rotation_product, r_norm, s_product, rho;
      |                                                              ^~~
[  8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o -MF CMakeFiles/pvode.dir/source/cvdiag.cpp.o.d -o CMakeFiles/pvode.dir/source/cvdiag.cpp.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvdiag.cpp
[  8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/externalpackages/PVODE && /usr/lib64/mpich/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o -MF CMakeFiles/pvode.dir/source/smalldense.cpp.o.d -o CMakeFiles/pvode.dir/source/smalldense.cpp.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/smalldense.cpp
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/smalldense.cpp: In function 'pvode::integer pvode::gefa(real**, integer, integer*)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/smalldense.cpp:82:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   82 |     if (swap = (l != k)) {
      |         ~~~~~^~~~~~~~~~
[ 11%] Linking CXX shared library ../../lib/libpvode.so
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/externalpackages/PVODE && /usr/bin/cmake -E cmake_link_script CMakeFiles/pvode.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/pvode.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libpvode.so.1.0.0 -o ../../lib/libpvode.so.1.0.0 CMakeFiles/pvode.dir/source/cvode.cpp.o CMakeFiles/pvode.dir/source/nvector.cpp.o CMakeFiles/pvode.dir/source/llnlmath.cpp.o CMakeFiles/pvode.dir/source/cvspgmr.cpp.o CMakeFiles/pvode.dir/source/spgmr.cpp.o CMakeFiles/pvode.dir/source/iterativ.cpp.o CMakeFiles/pvode.dir/source/cvdiag.cpp.o CMakeFiles/pvode.dir/source/smalldense.cpp.o 
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/externalpackages/PVODE && /usr/bin/cmake -E cmake_symlink_library ../../lib/libpvode.so.1.0.0 ../../lib/libpvode.so.1.0.0 ../../lib/libpvode.so
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 11%] Built target pvode
/usr/bin/gmake  -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 11%] Generating bout++-time.cxx
/usr/bin/cmake -P /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/cmake/GenerateDateTimeFile.cmake
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/CMakeFiles/bout++.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
/usr/bin/gmake  -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 14%] Building CXX object CMakeFiles/bout++.dir/src/bout++.cxx.o
[ 14%] Building CXX object CMakeFiles/bout++.dir/src/field/field.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/bout++.cxx.o -MF CMakeFiles/bout++.dir/src/bout++.cxx.o.d -o CMakeFiles/bout++.dir/src/bout++.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/bout++.cxx
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field.cxx.o -MF CMakeFiles/bout++.dir/src/field/field.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/field/field.cxx
[ 14%] Building CXX object CMakeFiles/bout++.dir/src/field/field2d.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field2d.cxx.o -MF CMakeFiles/bout++.dir/src/field/field2d.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field2d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/field/field2d.cxx
[ 14%] Building CXX object CMakeFiles/bout++.dir/src/field/field3d.cxx.o
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[ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field_data.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field_data.cxx.o -MF CMakeFiles/bout++.dir/src/field/field_data.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field_data.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/field/field_data.cxx
[ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field_factory.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field_factory.cxx.o -MF CMakeFiles/bout++.dir/src/field/field_factory.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field_factory.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/field/field_factory.cxx
[ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o -MF CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o.d -o CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/field/fieldgenerators.cxx
[ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/fieldgroup.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/fieldgroup.cxx.o -MF CMakeFiles/bout++.dir/src/field/fieldgroup.cxx.o.d -o CMakeFiles/bout++.dir/src/field/fieldgroup.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/field/fieldgroup.cxx
[ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/fieldperp.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/fieldperp.cxx.o -MF CMakeFiles/bout++.dir/src/field/fieldperp.cxx.o.d -o CMakeFiles/bout++.dir/src/field/fieldperp.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/field/fieldperp.cxx
[ 20%] Building CXX object CMakeFiles/bout++.dir/src/field/generated_fieldops.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/generated_fieldops.cxx.o -MF CMakeFiles/bout++.dir/src/field/generated_fieldops.cxx.o.d -o CMakeFiles/bout++.dir/src/field/generated_fieldops.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/field/generated_fieldops.cxx
[ 20%] Building CXX object CMakeFiles/bout++.dir/src/field/globalfield.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/globalfield.cxx.o -MF CMakeFiles/bout++.dir/src/field/globalfield.cxx.o.d -o CMakeFiles/bout++.dir/src/field/globalfield.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/field/globalfield.cxx
[ 20%] Building CXX object CMakeFiles/bout++.dir/src/field/initialprofiles.cxx.o
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[ 20%] Building CXX object CMakeFiles/bout++.dir/src/field/vecops.cxx.o
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[ 23%] Building CXX object CMakeFiles/bout++.dir/src/field/vector2d.cxx.o
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[ 23%] Building CXX object CMakeFiles/bout++.dir/src/field/where.cxx.o
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[ 23%] Building CXX object CMakeFiles/bout++.dir/src/invert/fft_fftw.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/fft_fftw.cxx.o -MF CMakeFiles/bout++.dir/src/invert/fft_fftw.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/fft_fftw.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/fft_fftw.cxx
[ 26%] Building CXX object CMakeFiles/bout++.dir/src/invert/lapack_routines.cxx.o
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[ 26%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/impls/cyclic/cyclic_laplace.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/cyclic/cyclic_laplace.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/cyclic/cyclic_laplace.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/cyclic/cyclic_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplace/impls/cyclic/cyclic_laplace.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/iterative_parallel_tri/iterative_parallel_tri.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/iterative_parallel_tri/iterative_parallel_tri.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/iterative_parallel_tri/iterative_parallel_tri.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplace/impls/iterative_parallel_tri/iterative_parallel_tri.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/serial_tri/serial_tri.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/serial_tri/serial_tri.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/serial_tri/serial_tri.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplace/impls/serial_tri/serial_tri.cxx
[ 35%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/impls/spt/spt.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/spt/spt.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/spt/spt.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/spt/spt.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplace/impls/spt/spt.cxx
[ 35%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/impls/hypre3d/hypre3d_laplace.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/hypre3d/hypre3d_laplace.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/hypre3d/hypre3d_laplace.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/hypre3d/hypre3d_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplace/impls/hypre3d/hypre3d_laplace.cxx
[ 35%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/invert_laplace.cxx.o
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[ 38%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplacexy/laplacexy.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplacexy2/laplacexy2.cxx
[ 38%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplacexy2/laplacexy2_hypre.cxx
In file included from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplacexy2/laplacexy2_hypre.cxx:1:
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invert/laplacexy2_hypre.hxx:41:2: warning: #warning LaplaceXY requires Hypre. No LaplaceXY available [-Wcpp]
   41 | #warning LaplaceXY requires Hypre. No LaplaceXY available
      |  ^~~~~~~
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx
[ 38%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx
[ 41%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplacexz/laplacexz.cxx
[ 41%] Building CXX object CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o -MF CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/parderiv/impls/cyclic/cyclic.cxx
[ 41%] Building CXX object CMakeFiles/bout++.dir/src/invert/parderiv/invert_parderiv.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/parderiv/invert_parderiv.cxx.o -MF CMakeFiles/bout++.dir/src/invert/parderiv/invert_parderiv.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/parderiv/invert_parderiv.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/parderiv/invert_parderiv.cxx
[ 41%] Building CXX object CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_factory.cxx
[ 44%] Building CXX object CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_region.cxx
[ 44%] Building CXX object CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx
[ 44%] Building CXX object CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/coordinates.cxx
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx: In function 'void verifyNumPoints(BoundaryRegion*, int)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx:80:21: warning: 'virtual bool Mesh::firstY() const' is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
   80 |     if (mesh->firstY()) {
      |         ~~~~~~~~~~~~^~
In file included from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/field_factory.hxx:32,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/boundary_standard.hxx:9,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx:1:
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:441:66: note: declared here
  441 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx:83:20: warning: 'virtual bool Mesh::lastY() const' is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
   83 |     if (mesh->lastY()) {
      |         ~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:445:65: note: declared here
  445 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx: In member function 'virtual void BoundaryDirichlet::apply(Field3D&, BoutReal)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx:473:31: warning: 'virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)' is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
  473 |             val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
      |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  474 |                                t);
      |                                ~~
In file included from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/field_data.hxx:51,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/field.hxx:39,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/field2d.hxx:34,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/boundary_op.hxx:9,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/boundary_standard.hxx:6:
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/sys/expressionparser.hxx:70:3: note: declared here
   70 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx:517:33: warning: 'virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)' is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
  517 |               val = fg->generate(xnorm, TWOPI * ynorm,
      |                     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
  518 |                                  TWOPI * (zk - 0.5) / (mesh->LocalNz), t);
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/sys/expressionparser.hxx:70:3: note: declared here
   70 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx: In member function 'virtual void BoundaryDirichlet_O3::apply(Field3D&, BoutReal)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx:978:31: warning: 'virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)' is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
  978 |             val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
      |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  979 |                                t);
      |                                ~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/sys/expressionparser.hxx:70:3: note: declared here
   70 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx: In member function 'virtual void BoundaryDirichlet_O4::apply(Field3D&, BoutReal)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx:1444:31: warning: 'virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)' is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
 1444 |             val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
      |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1445 |                                t);
      |                                ~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/sys/expressionparser.hxx:70:3: note: declared here
   70 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx: In member function 'virtual void BoundaryNeumann::apply(Field3D&, BoutReal)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx:2152:33: warning: 'virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)' is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
 2152 |               val = fg->generate(xnorm, TWOPI * ynorm,
      |                     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
 2153 |                                  TWOPI * (zk - 0.5) / (mesh->LocalNz), t);
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/sys/expressionparser.hxx:70:3: note: declared here
   70 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
[ 44%] Building CXX object CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/coordinates_accessor.cxx
[ 47%] Building CXX object CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/data/gridfromfile.cxx
[ 47%] Building CXX object CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/data/gridfromoptions.cxx
[ 47%] Building CXX object CMakeFiles/bout++.dir/src/mesh/difops.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/difops.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/difops.cxx
[ 47%] Building CXX object CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/fv_ops.cxx
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/fv_ops.cxx: In function 'FV::communicateFluxes(Field3D&)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/fv_ops.cxx:517:15: warning: 'xout' may be used uninitialized [-Wmaybe-uninitialized]
  517 |     mesh->wait(xout);
      |     ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/fv_ops.cxx:488:20: note: 'xout' was declared here
  488 |   comm_handle xin, xout;
      |                    ^~~~
[ 50%] Building CXX object CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/impls/bout/boutmesh.cxx
[ 50%] Building CXX object CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/index_derivs.cxx
In file included from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/field.hxx:36,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/field2d.hxx:34,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/options.hxx:43,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/deriv_store.hxx:42,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:48,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/impls/bout/boutmesh.hxx:8,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/impls/bout/boutmesh.cxx:36:
In member function 'std::__shared_ptr<ArrayData<double>, (__gnu_cxx::_Lock_policy)2>::operator bool() const',
    inlined from 'std::operator==<ArrayData<double> >(std::shared_ptr<ArrayData<double> > const&, decltype(nullptr))bool' at /usr/include/c++/13/bits/shared_ptr.h:562:14,
    inlined from 'Array<double, ArrayData<double> >::empty() const' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/array.hxx:270:44,
    inlined from 'Field3D::isAllocated() const' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/field3d.hxx:203:48,
    inlined from 'BoutMesh::pack_data(std::vector<FieldData*, std::allocator<FieldData*> > const&, int, int, int, int, double*)' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/impls/bout/boutmesh.cxx:2262:7:
/usr/include/c++/13/bits/shared_ptr_base.h:1670:16: warning: potential null pointer dereference [-Wnull-dereference]
 1670 |       { return _M_ptr != nullptr; }
      |                ^~~~~~
In member function 'std::__shared_ptr<ArrayData<double>, (__gnu_cxx::_Lock_policy)2>::operator bool() const',
    inlined from 'std::operator==<ArrayData<double> >(std::shared_ptr<ArrayData<double> > const&, decltype(nullptr))bool' at /usr/include/c++/13/bits/shared_ptr.h:562:14,
    inlined from 'Array<double, ArrayData<double> >::empty() const' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/array.hxx:270:44,
    inlined from 'Field2D::isAllocated() const' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/field2d.hxx:106:48,
    inlined from 'BoutMesh::pack_data(std::vector<FieldData*, std::allocator<FieldData*> > const&, int, int, int, int, double*)' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/impls/bout/boutmesh.cxx:2273:7:
/usr/include/c++/13/bits/shared_ptr_base.h:1670:16: warning: potential null pointer dereference [-Wnull-dereference]
 1670 |       { return _M_ptr != nullptr; }
      |                ^~~~~~
[ 50%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/interpolation_xz.cxx
[ 50%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/bilinear_xz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/interpolation/bilinear_xz.cxx
[ 52%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_xz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/interpolation/hermite_spline_xz.cxx
[ 52%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/hermite_spline_z.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/interpolation/hermite_spline_z.cxx
[ 52%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/interpolation_z.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/interpolation/interpolation_z.cxx
[ 52%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/lagrange_4pt_xz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/interpolation/lagrange_4pt_xz.cxx
[ 55%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/interpolation/monotonic_hermite_spline_xz.cxx
[ 55%] Building CXX object CMakeFiles/bout++.dir/src/mesh/mesh.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/mesh.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/mesh.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/mesh.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/mesh.cxx
[ 55%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel/fci.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel/fci.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel/fci.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel/fci.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/parallel/fci.cxx
[ 55%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel/identity.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel/identity.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel/identity.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel/identity.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/parallel/identity.cxx
[ 58%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetric.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetric.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetric.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetric.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/parallel/shiftedmetric.cxx
[ 58%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetricinterp.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetricinterp.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetricinterp.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetricinterp.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/parallel/shiftedmetricinterp.cxx
[ 58%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/parallel_boundary_op.cxx
[ 58%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/parallel_boundary_region.cxx
[ 58%] Building CXX object CMakeFiles/bout++.dir/src/mesh/surfaceiter.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/surfaceiter.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/surfaceiter.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/surfaceiter.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/surfaceiter.cxx
[ 61%] Building CXX object CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o -MF CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/physics/gyro_average.cxx
[ 61%] Building CXX object CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o -MF CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/physics/physicsmodel.cxx
[ 61%] Building CXX object CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o -MF CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/physics/smoothing.cxx
[ 61%] Building CXX object CMakeFiles/bout++.dir/src/physics/snb.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/snb.cxx.o -MF CMakeFiles/bout++.dir/src/physics/snb.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/snb.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/physics/snb.cxx
[ 64%] Building CXX object CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o -MF CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/physics/sourcex.cxx
[ 64%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/adams_bashforth/adams_bashforth.cxx
[ 64%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/arkode/arkode.cxx
[ 64%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/cvode/cvode.cxx
[ 67%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/euler/euler.cxx
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/cvode/cvode.cxx: In member function 'virtual int CvodeSolver::init()':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/cvode/cvode.cxx:378:33: warning: 'int CVSpilsSetLinearSolver(void*, SUNLinearSolver)' is deprecated: use CVodeSetLinearSolver instead [-Wdeprecated-declarations]
  378 |       if (CVSpilsSetLinearSolver(cvode_mem, sun_solver) != CV_SUCCESS) {
      |           ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/cvode/cvode.cxx:49:
/usr/include/mpich-x86_64/cvode/cvode_spils.h:43:5: note: declared here
   43 | int CVSpilsSetLinearSolver(void *cvode_mem, SUNLinearSolver LS);
      |     ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/cvode/cvode.cxx:416:37: warning: 'int CVSpilsSetPreconditioner(void*, CVSpilsPrecSetupFn, CVSpilsPrecSolveFn)' is deprecated: use CVodeSetPreconditioner instead [-Wdeprecated-declarations]
  416 |         if (CVSpilsSetPreconditioner(cvode_mem, nullptr, cvode_pre_shim)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/cvode/cvode_spils.h:49:5: note: declared here
   49 | int CVSpilsSetPreconditioner(void *cvode_mem, CVSpilsPrecSetupFn pset,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/cvode/cvode.cxx:428:33: warning: 'int CVSpilsSetLinearSolver(void*, SUNLinearSolver)' is deprecated: use CVodeSetLinearSolver instead [-Wdeprecated-declarations]
  428 |       if (CVSpilsSetLinearSolver(cvode_mem, sun_solver) != CV_SUCCESS) {
      |           ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/cvode/cvode_spils.h:43:5: note: declared here
   43 | int CVSpilsSetLinearSolver(void *cvode_mem, SUNLinearSolver LS);
      |     ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/cvode/cvode.cxx:442:29: warning: 'int CVSpilsSetJacTimes(void*, CVSpilsJacTimesSetupFn, CVSpilsJacTimesVecFn)' is deprecated: use CVodeSetJacTimes instead [-Wdeprecated-declarations]
  442 |       if (CVSpilsSetJacTimes(cvode_mem, nullptr, cvode_jac) != CV_SUCCESS) {
      |           ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/cvode/cvode_spils.h:53:5: note: declared here
   53 | int CVSpilsSetJacTimes(void *cvode_mem, CVSpilsJacTimesSetupFn jtsetup,
      |     ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/cvode/cvode.cxx: In member function 'virtual int CvodeSolver::run()':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/cvode/cvode.cxx:533:28: warning: 'int CVSpilsGetNumPrecSolves(void*, long int*)' is deprecated: use CVodeGetNumPrecSolves instead [-Wdeprecated-declarations]
  533 |     CVSpilsGetNumPrecSolves(cvode_mem, &temp_long_int);
      |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/cvode/cvode_spils.h:64:5: note: declared here
   64 | int CVSpilsGetNumPrecSolves(void *cvode_mem, long int *npsolves);
      |     ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/cvode/cvode.cxx:535:26: warning: 'int CVSpilsGetNumLinIters(void*, long int*)' is deprecated: use CVodeGetNumLinIters instead [-Wdeprecated-declarations]
  535 |     CVSpilsGetNumLinIters(cvode_mem, &temp_long_int);
      |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/cvode/cvode_spils.h:67:5: note: declared here
   67 | int CVSpilsGetNumLinIters(void *cvode_mem, long int *nliters);
      |     ^~~~~~~~~~~~~~~~~~~~~
[ 67%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/ida/ida.cxx
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/ida/ida.cxx: In member function 'virtual int IdaSolver::init()':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/ida/ida.cxx:199:30: warning: 'int IDASpilsSetLinearSolver(void*, SUNLinearSolver)' is deprecated: use IDASetLinearSolver instead [-Wdeprecated-declarations]
  199 |   if (IDASpilsSetLinearSolver(idamem, sun_solver) != IDA_SUCCESS) {
      |       ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/ida/ida.cxx:45:
/usr/include/mpich-x86_64/ida/ida_spils.h:44:5: note: declared here
   44 | int IDASpilsSetLinearSolver(void *ida_mem, SUNLinearSolver LS);
      |     ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/ida/ida.cxx:234:36: warning: 'int IDASpilsSetPreconditioner(void*, IDASpilsPrecSetupFn, IDASpilsPrecSolveFn)' is deprecated: use IDASetPreconditioner instead [-Wdeprecated-declarations]
  234 |       if (IDASpilsSetPreconditioner(idamem, nullptr, ida_pre_shim)) {
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/mpich-x86_64/ida/ida_spils.h:47:5: note: declared here
   47 | int IDASpilsSetPreconditioner(void *ida_mem, IDASpilsPrecSetupFn pset,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/imex-bdf2/imex-bdf2.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/imex-bdf2/imex-bdf2.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/imex-bdf2/imex-bdf2.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/imex-bdf2/imex-bdf2.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/petsc/petsc.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/petsc/petsc.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/petsc/petsc.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/petsc/petsc.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/power/power.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/power/power.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/power/power.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/power/power.cxx
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/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/pvode/pvode.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/pvode/pvode.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/pvode/pvode.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/pvode/pvode.cxx
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[ 79%] Building CXX object CMakeFiles/bout++.dir/src/sys/boutcomm.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/boutcomm.cxx.o -MF CMakeFiles/bout++.dir/src/sys/boutcomm.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/boutcomm.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/boutcomm.cxx
[ 79%] Building CXX object CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o -MF CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/boutexception.cxx
[ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/derivs.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/derivs.cxx.o -MF CMakeFiles/bout++.dir/src/sys/derivs.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/derivs.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/derivs.cxx
[ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o -MF CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/expressionparser.cxx
[ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o -MF CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/generator_context.cxx
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/expressionparser.cxx: In member function 'virtual double FieldGenerator::generate(const bout::generator::Context&)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/expressionparser.cxx:43:18: warning: 'virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)' is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
   43 |   return generate(ctx.x(), ctx.y(), ctx.z(), ctx.t());
      |          ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/expressionparser.cxx:25:
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/sys/expressionparser.hxx:70:3: note: declared here
   70 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
[ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o -MF CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/hyprelib.cxx
[ 85%] Building CXX object CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o -MF CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/msg_stack.cxx
[ 85%] Building CXX object CMakeFiles/bout++.dir/src/sys/options.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/options.cxx.o -MF CMakeFiles/bout++.dir/src/sys/options.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/options.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/options.cxx
[ 85%] Building CXX object CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o -MF CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/options/options_ini.cxx
[ 85%] Building CXX object CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o -MF CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/options/options_netcdf.cxx
In file included from /usr/include/mpich-x86_64/ncFile.h:2,
                 from /usr/include/mpich-x86_64/netcdf:16,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/options/options_netcdf.cxx:14:
/usr/include/mpich-x86_64/ncGroup.h:18:14: warning: 'netCDF::file_id' defined but not used [-Wunused-variable]
   18 |   static int file_id;
      |              ^~~~~~~
[ 88%] Building CXX object CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o -MF CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/optionsreader.cxx
[ 88%] Building CXX object CMakeFiles/bout++.dir/src/sys/output.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/output.cxx.o -MF CMakeFiles/bout++.dir/src/sys/output.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/output.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/output.cxx
[ 88%] Building CXX object CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o -MF CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/petsclib.cxx
[ 88%] Building CXX object CMakeFiles/bout++.dir/src/sys/range.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/range.cxx.o -MF CMakeFiles/bout++.dir/src/sys/range.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/range.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/range.cxx
[ 91%] Building CXX object CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o -MF CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/slepclib.cxx
[ 91%] Building CXX object CMakeFiles/bout++.dir/src/sys/timer.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/timer.cxx.o -MF CMakeFiles/bout++.dir/src/sys/timer.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/timer.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/timer.cxx
[ 91%] Building CXX object CMakeFiles/bout++.dir/src/sys/type_name.cxx.o
/usr/lib64/mpich/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/type_name.cxx.o -MF CMakeFiles/bout++.dir/src/sys/type_name.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/type_name.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/type_name.cxx
[ 91%] Building CXX object CMakeFiles/bout++.dir/src/sys/utils.cxx.o
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[ 94%] Building CXX object CMakeFiles/bout++.dir/bout++-time.cxx.o
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[ 94%] Linking CXX shared library lib/libbout++.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/bout++.dir/link.txt --verbose=1
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/usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplace/impls/spt/spt.cxx: In member function '__ct_base ':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplace/impls/spt/spt.cxx:68:37: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   68 |   alldata = new SPT_data[ye - ys + 1];
      |                                     ^
/usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here
  128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
/usr/bin/cmake -E cmake_symlink_library lib/libbout++.so.5.0.0 lib/libbout++.so.5.0.0 lib/libbout++.so
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 94%] Built target bout++
/usr/bin/gmake  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 97%] Generating resolve_enum.pxd
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build
[ 97%] Generating boutcpp.pxd
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.11 generate.py resolve_enum.pxd.jinja /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/resolve_enum.pxd
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.11 generate.py boutcpp.pxd.jinja /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/boutcpp.pxd
[ 97%] Generating boutpp.pyx
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.11 generate.py boutpp.pyx.jinja /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/boutpp.pyx
[100%] Generating helper.cxx
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.11 generate.py helper.cxx.jinja /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/helper.cxx
[100%] Generating helper.h
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.11 generate.py helper.h.jinja /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/helper.h
[100%] Cythonizing python interface
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy boutpp.pyx libboutpp.pyx
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build && /usr/bin/python3.11 -m cython libboutpp.pyx --cplus -3 -X binding=True -X embedsignature=True
warning: resolve_enum.pxd:49:21: 'deflt' redeclared 
warning: resolve_enum.pxd:189:24: 'Standard' redeclared 
warning: resolve_enum.pxd:223:15: 'Standard' redeclared 
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
/usr/bin/gmake  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[100%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/helper.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_311_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build -I/usr/include/python3.11 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/helper.cxx.o -MF CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/helper.cxx.o.d -o CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/helper.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/helper.cxx
[100%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/libboutpp.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_311_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build -I/usr/include/python3.11 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/libboutpp.cpp.o -MF CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/libboutpp.cpp.o.d -o CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/libboutpp.cpp.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp
In file included from /usr/include/numpy/ndarraytypes.h:1940,
                 from /usr/include/numpy/ndarrayobject.h:12,
                 from /usr/include/numpy/arrayobject.h:5,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:793:
/usr/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
[100%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/boutexception_helper.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_311_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build -I/usr/include/python3.11 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/boutexception_helper.cxx.o -MF CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/boutexception_helper.cxx.o.d -o CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/boutexception_helper.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/boutexception_helper.cxx
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:30516:46: warning: '__pyx_obj_9libboutpp_Vector2D* __pyx_f_9libboutpp_v2dFromObj(Vector2D)' defined but not used [-Wunused-function]
30516 | static struct __pyx_obj_9libboutpp_Vector2D *__pyx_f_9libboutpp_v2dFromObj(Vector2D __pyx_v_i) {
      |                                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp: In function '__pyx_f_12resolve_enum_resolve_cell_loc(_object*)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56447:10: warning: '__pyx_r' may be used uninitialized [-Wmaybe-uninitialized]
56447 |   return __pyx_r;
      |          ^~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56090:12: note: '__pyx_r' was declared here
56090 |   CELL_LOC __pyx_r;
      |            ^~~~~~~
In function '__pyx_pf_9libboutpp_48bracket(_object*, __pyx_obj_9libboutpp_Field3D*, __pyx_obj_9libboutpp_Field3D*, _object*, _object*)',
    inlined from '__pyx_pw_9libboutpp_49bracket(_object*, _object*, _object*)' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:48665:42:
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:48741:65: warning: '__pyx_r' may be used uninitialized [-Wmaybe-uninitialized]
48741 |   __pyx_t_1 = ((PyObject *)__pyx_f_9libboutpp_f3dFromObj(bracket((__pyx_v_a->cobj[0]), (__pyx_v_b->cobj[0]), __pyx_v_method_, __pyx_v_outloc_))); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 2901, __pyx_L1_error)
      |                                                          ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp: In function '__pyx_pw_9libboutpp_49bracket(_object*, _object*, _object*)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57958:18: note: '__pyx_r' was declared here
57958 |   BRACKET_METHOD __pyx_r;
      |                  ^~~~~~~
[100%] Linking CXX shared library libboutpp.cpython-311-x86_64-linux-gnu.so
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E cmake_link_script CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libboutpp.cpython-311-x86_64-linux-gnu.so -o libboutpp.cpython-311-x86_64-linux-gnu.so "CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/libboutpp.cpp.o" "CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/helper.cxx.o" "CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/boutexception_helper.cxx.o"  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib: ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[100%] Built target boutpp.cpython-311-x86_64-linux-gnu
/usr/bin/gmake  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color="
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gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[100%] Building python interface
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpython-311-x86_64-linux-gnu.so /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-311-x86_64-linux-gnu.so
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/../boutpp/__init__.py
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[100%] Built target boutpp
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Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j2
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea -B/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich --check-build-system CMakeFiles/Makefile.cmake 0
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/usr/lib/python3.11/site-packages/boutdata/collect.py:docstring of boutdata.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them
WARNING: autodoc: failed to import module 'mayavi2' from module 'boutdata'; the following exception was raised:
No module named 'enthought'
/usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:5: ERROR: Unexpected indentation.
/usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart:3: WARNING: Block quote ends without a blank line; unexpected unindent.
/usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:56: WARNING: Footnote [1] is not referenced.
WARNING: autodoc: failed to import module 'boutpp'; the following exception was raised:
No module named 'boutpp'
WARNING: autodoc: failed to import module 'analyse_equil_2' from module 'boututils'; the following exception was raised:
No module named 'crosslines'
WARNING: autodoc: failed to import module 'anim' from module 'boututils'; the following exception was raised:
No module named 'tvtk'
WARNING: autodoc: failed to import module 'boutgrid' from module 'boututils'; the following exception was raised:
No module named 'tvtk'
/usr/lib/python3.11/site-packages/boututils/calculus.py:docstring of boututils.calculus.deriv2D:14: ERROR: Unexpected indentation.
WARNING: autodoc: failed to import module 'crosslines' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'efit_analyzer' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'fft_deriv' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'int_func' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'mode_structure' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'moment_xyzt' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'radial_grid' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'surface_average' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'volume_integral' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'zoidberg'; the following exception was raised:
No module named 'zoidberg'
WARNING: autodoc: failed to import module 'boundary' from module 'zoidberg'; the following exception was raised:
No module named 'zoidberg'
WARNING: autodoc: failed to import module 'field' from module 'zoidberg'; the following exception was raised:
No module named 'zoidberg'
WARNING: autodoc: failed to import module 'fieldtracer' from module 'zoidberg'; the following exception was raised:
No module named 'zoidberg'
looking for now-outdated files... WARNING: autodoc: failed to import module 'grid' from module 'zoidberg'; the following exception was raised:
No module named 'zoidberg'
WARNING: autodoc: failed to import module 'plot' from module 'zoidberg'; the following exception was raised:
No module named 'zoidberg'
WARNING: autodoc: failed to import module 'poloidal_grid' from module 'zoidberg'; the following exception was raised:
No module named 'zoidberg'
WARNING: autodoc: failed to import module 'progress' from module 'zoidberg'; the following exception was raised:
No module named 'zoidberg'
WARNING: autodoc: failed to import module 'rzline' from module 'zoidberg'; the following exception was raised:
No module named 'zoidberg'
WARNING: autodoc: failed to import module 'zoidberg' from module 'zoidberg'; the following exception was raised:
No module named 'zoidberg'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/api_reference.rst:4: WARNING: toctree glob pattern '_breathe_autogen/*' didn't match any documents
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/file_io.rst:114: ERROR: Unknown interpreted text role "py".
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/user_docs/boundary_options.rst:120: WARNING: Footnote [#] is not referenced.
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/user_docs/installing.rst:447: WARNING: Title underline too short.
Working with an active ``conda`` environment
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/user_docs/installing.rst:453: ERROR: Unexpected indentation.
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/user_docs/installing.rst:454: WARNING: Block quote ends without a blank line; unexpected unindent.
/usr/lib/python3.11/site-packages/boututils/__init__.py:docstring of boututils:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :noindex: for one of them
/usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata:1: WARNING: duplicate object description of boutdata, other instance in _apidoc/boutdata, use :noindex: for one of them
/usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata.collect.attributes:1: WARNING: duplicate object description of boutdata.attributes, other instance in _apidoc/boutdata, use :noindex: for one of them
/usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata.collect.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/user_docs/running_bout.rst:463: WARNING: Literal block expected; none found.
none found
pickling environment... done
checking consistency... done
preparing documents... WARNING: unsupported theme option 'repository_url' given
done
WARNING: unsupported theme option 'path_to_docs' given
WARNING: unsupported theme option 'use_edit_page_button' given
WARNING: unsupported theme option 'use_repository_button' given
WARNING: unsupported theme option 'use_issues_button' given
WARNING: unsupported theme option 'home_page_in_toc' given
writing output... [  2%] _apidoc/boutdata
writing output... [  4%] _apidoc/boutpp
writing output... [  6%] _apidoc/boututils
writing output... [  8%] _apidoc/zoidberg
writing output... [ 10%] api_reference
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writing output... [ 30%] developer_docs/petsc_interface
writing output... [ 32%] index
writing output... [ 34%] user_docs/BOUT_Gradperp_op
writing output... [ 36%] user_docs/advanced_install
writing output... [ 39%] user_docs/algebraic_operators
writing output... [ 41%] user_docs/boundary_options
writing output... [ 43%] user_docs/bout_functions_for_physics
writing output... [ 45%] user_docs/bout_options
writing output... [ 47%] user_docs/coordinates
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/usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.addnoise:1: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator.normal'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 5]
    numpy.random.Generator.normal
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5]
      numpy.random.Generator.normal
      -----^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        numpy.random.Generator.normal
        -----^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        numpy.random.Generator.normal
        -----^
/usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.addnoise:1: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 5]
    numpy.random.Generator
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5]
      numpy.random.Generator
      -----^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        numpy.random.Generator
        -----^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        numpy.random.Generator
        -----^
/usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.addnoise:1: WARNING: undefined label: 'random-quick-start'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:81: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:87: WARNING: unknown document: '../_breathe_autogen/file/field2d_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:93: WARNING: unknown document: '../_breathe_autogen/file/field3d_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:100: WARNING: unknown document: '../_breathe_autogen/file/field__data_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:105: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:112: WARNING: unknown document: '../_breathe_autogen/file/initialprofiles_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/vecops_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:124: WARNING: unknown document: '../_breathe_autogen/file/vector2d_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:129: WARNING: unknown document: '../_breathe_autogen/file/vector3d_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:133: WARNING: unknown document: '../_breathe_autogen/file/where_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft__fftw_8cxx'
generating indices... genindex /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft_8hxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:148: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:154: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8hxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:156: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:160: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8hxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:162: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:166: WARNING: unknown document: '../_breathe_autogen/file/spt_8hxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:168: WARNING: unknown document: '../_breathe_autogen/file/spt_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:173: WARNING: unknown document: '../_breathe_autogen/file/invert__parderiv_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:181: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:183: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8hxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:187: WARNING: unknown document: '../_breathe_autogen/file/lapack__routines_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:191: WARNING: unknown document: '../_breathe_autogen/file/boundary__factory_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:195: WARNING: unknown document: '../_breathe_autogen/file/boundary__region_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:200: WARNING: unknown document: '../_breathe_autogen/file/boundary__standard_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:204: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:204: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:209: WARNING: unknown document: '../_breathe_autogen/file/interpolation_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:212: WARNING: unknown document: '../_breathe_autogen/file/mesh_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:220: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:224: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8hxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:229: WARNING: unknown document: '../_breathe_autogen/file/gyro__average_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:231: WARNING: unknown document: '../_breathe_autogen/file/smoothing_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:234: WARNING: unknown document: '../_breathe_autogen/file/sourcex_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:240: WARNING: unknown document: '../_breathe_autogen/file/solver_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:247: WARNING: unknown document: '../_breathe_autogen/file/cvode_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:251: WARNING: unknown document: '../_breathe_autogen/file/cvode_8hxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:255: WARNING: unknown document: '../_breathe_autogen/file/ida_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:259: WARNING: unknown document: '../_breathe_autogen/file/ida_8hxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:263: WARNING: unknown document: '../_breathe_autogen/file/petsc_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:266: WARNING: unknown document: '../_breathe_autogen/file/petsc_8hxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:270: WARNING: unknown document: '../_breathe_autogen/file/pvode_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:274: WARNING: unknown document: '../_breathe_autogen/file/pvode_8hxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:278: WARNING: unknown document: '../_breathe_autogen/file/boutcomm_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:280: WARNING: unknown document: '../_breathe_autogen/file/boutexception_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:289: WARNING: unknown document: '../_breathe_autogen/file/msg__stack_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:296: WARNING: unknown document: '../_breathe_autogen/file/options_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:300: WARNING: unknown document: '../_breathe_autogen/file/optionsreader_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:302: WARNING: unknown document: '../_breathe_autogen/file/output_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:304: WARNING: unknown document: '../_breathe_autogen/file/range_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:308: WARNING: unknown document: '../_breathe_autogen/file/timer_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:312: WARNING: unknown document: '../_breathe_autogen/file/utils_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:318: WARNING: unknown document: '../_breathe_autogen/file/optionparser_8hxx'
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/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:322: WARNING: unknown document: '../_breathe_autogen/file/options__ini_8hxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/mesh.rst:31: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field2d_8hxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field3d_8hxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8hxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/user_docs/differential_operators.rst:530: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/user_docs/differential_operators.rst:538: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/user_docs/laplacian.rst:185: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/user_docs/output_and_post.rst:581: WARNING: Could not lex literal_block as "mathematica". Highlighting skipped.
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/user_docs/time_integration.rst:1013: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx'
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build succeeded, 118 warnings.
The HTML pages are in docs.
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/manual && /usr/bin/cmake -E echo Generated\ HTML\ docs\ in\ file:///builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/manual/docs/index.html
Generated HTML docs in file:///builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/manual/docs/index.html
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/manual /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/manual/CMakeFiles/docs.dir/DependInfo.cmake "--color="
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gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[100%] Built target docs
gmake[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/CMakeFiles 0
+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/mpich/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/mpich/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/mpich-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/mpich-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64
+ eval 'unset LD_LIBRARY_PATH;
unset MPI_COMPILER;
MANPATH=/usr/share/man:; export MANPATH;
unset MPI_INCLUDE;
unset MPI_MAN;
unset MPI_PYTHON_SITEARCH;
unset _LMFILES_;
unset LOADEDMODULES;
PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
unset MPI_PYTHON3_SITEARCH;
unset MPI_FORTRAN_MOD_DIR;
unset MPI_HOME;
unset __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH;
unset MPI_SYSCONFIG;
unset MPI_SUFFIX;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
unset MPI_PYTHON2_SITEARCH;
unset MPI_LIB;
PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
unset MPI_BIN;
test 0;'
++ unset LD_LIBRARY_PATH
++ unset MPI_COMPILER
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset MPI_MAN
++ unset MPI_PYTHON_SITEARCH
++ unset _LMFILES_
++ unset LOADEDMODULES
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_FORTRAN_MOD_DIR
++ unset MPI_HOME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SYSCONFIG
++ unset MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_PYTHON2_SITEARCH
++ unset MPI_LIB
++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ for mpi in mpich openmpi
+ '[' openmpi = mpich ']'
+ '[' openmpi = openmpi ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
LOADEDMODULES=; export LOADEDMODULES;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
LOADEDMODULES=; export LOADEDMODULES;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ LOADEDMODULES=
++++ export LOADEDMODULES
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/openmpi-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/openmpi-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64
+ eval 'MPI_COMPILER=openmpi-x86_64; export MPI_COMPILER;
LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH;
MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/openmpi-x86_64; export MPI_INCLUDE;
MPI_MAN=/usr/share/man/openmpi-x86_64; export MPI_MAN;
_LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64; export _LMFILES_;
LOADEDMODULES=mpi/openmpi-x86_64; export LOADEDMODULES;
PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/openmpi; export MPI_PYTHON3_SITEARCH;
MPI_HOME=/usr/lib64/openmpi; export MPI_HOME;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR;
__MODULES_LMALTNAME=mpi/openmpi-x86_64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME;
__MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SUFFIX=_openmpi; export MPI_SUFFIX;
MPI_SYSCONFIG=/etc/openmpi-x86_64; export MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB;
PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN;
test 0;'
++ MPI_COMPILER=openmpi-x86_64
++ export MPI_COMPILER
++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
++ export LD_LIBRARY_PATH
++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/openmpi-x86_64
++ export MPI_INCLUDE
++ MPI_MAN=/usr/share/man/openmpi-x86_64
++ export MPI_MAN
++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64
++ export _LMFILES_
++ LOADEDMODULES=mpi/openmpi-x86_64
++ export LOADEDMODULES
++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/openmpi
++ export MPI_PYTHON3_SITEARCH
++ MPI_HOME=/usr/lib64/openmpi
++ export MPI_HOME
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi
++ export MPI_FORTRAN_MOD_DIR
++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest'
++ export __MODULES_LMALTNAME
++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SUFFIX=_openmpi
++ export MPI_SUFFIX
++ MPI_SYSCONFIG=/etc/openmpi-x86_64
++ export MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_LIB=/usr/lib64/openmpi/lib
++ export MPI_LIB
++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/openmpi/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export OMPI_MCA_rmaps_base_oversubscribe=1
+ OMPI_MCA_rmaps_base_oversubscribe=1
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=mpicc
+ export CC
+ CXX=mpicxx
+ export CXX
+ /usr/bin/cmake -S . -B build_openmpi -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBOUT_USE_FFTW=ON -DBOUT_USE_NETCDF=ON -DBOUT_USE_SCOREP=OFF -DBOUT_USE_SYSTEM_MPARK_VARIANT=ON -DBOUT_USE_LAPACK=ON -DBOUT_USE_NLS=ON -DBOUT_USE_SYSTEM_FMT=ON -DBOUT_USE_UUID_SYSTEM_GENERATOR=ON -DCMAKE_INSTALL_PREFIX=/ -DCMAKE_INSTALL_LIBDIR=/usr/lib64/openmpi/lib -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DCMAKE_INSTALL_INCLUDEDIR=/usr/include/openmpi-x86_64/bout++/ -DCMAKE_INSTALL_DATAROOTDIR=/usr/share -DCMAKE_INSTALL_PYTHON_SITEARCH=/usr/lib64/python3.11/site-packages/openmpi -DBOUT_BUILD_DOCS=ON -DBOUT_USE_PETSC=ON -DBOUT_USE_SUNDIALS=ON
-- The CXX compiler identification is GNU 13.1.1
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/lib64/openmpi/bin/mpicxx - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Configuring BOUT++ version 5.0.0
-- Found Python3: /usr/bin/python3.11 (found version "3.11.4") found components: Interpreter 
-- Could NOT find ClangFormat (missing: ClangFormat_BIN) 
Traceback (most recent call last):
  File "<string>", line 1, in <module>
ModuleNotFoundError: No module named 'zoidberg'
CMake Warning (dev) at CMakeLists.txt:373 (message):
  'src/field/generated_fieldops.cxx' will not be regenerated when you make
  changes to either 'src/field/gen_fieldops.py' or
  'src/field/gen_fieldops.jinja'.  This is because either Python3 or
  clang-format is missing (see above messages for more information) or
  BOUT_GENERATE_FIELDOPS is OFF (current value: OFF).  This warning is only
  important for BOUT++ developers and can otherwise be safely ignored.
This warning is for project developers.  Use -Wno-dev to suppress it.
-- Found Python: /usr/bin/python3.11 (found suitable version "3.11.4", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed 
-- Found Numpy: /usr/include (found version "1.24.3") 
-- Found Cython: TRUE (found version "0.29.35") 
-- Found Bash: /usr/bin/bash (found version "5.2.15") 
-- Building BOUT++ Python interface
-- Found MPI_CXX: /usr/lib64/openmpi/bin/mpicxx (found version "3.1") 
-- Found MPI: TRUE (found version "3.1")  
-- Enable OpenMP: OFF
-- HYPRE support: OFF
-- Found PkgConfig: /usr/bin/pkg-config (found version "1.9.4") 
-- Checking for one of the modules 'PETSc>3.4.0;petsc>3.4.0'
-- Found PETSc: /usr/include/openmpi-x86_64/petsc  
-- PETSc support: ON
-- Using external mpark.variant
-- Using external fmt
-- PVODE support: ON
-- Found netCDF: /usr/lib64/libnetcdf.so (found version "4.9.0") 
-- Found netCDFCxx version 4.3.1
-- Found netCDFCxx: /usr/lib64/libnetcdf_c++4.so (found version "4.3.1") 
-- NetCDF support: ON
-- Found FFTW: /usr/lib64/libfftw3.so  
-- FFTW support: ON
-- Looking for sgemm_
-- Looking for sgemm_ - not found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE  
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS: /usr/lib64/libflexiblas.so  
-- Looking for cheev_
-- Looking for cheev_ - found
-- Found LAPACK: /usr/lib64/libflexiblas.so;-lm;-ldl  
-- LAPACK support: ON
-- SLEPc support: OFF
-- SUNDIALS support: ON
-- Found Gettext: /usr/bin/msgmerge (found version "0.22") 
-- Found Intl: built in to C library  
-- libuuid not found, using fallback UUID generator
-- UUID_SYSTEM_GENERATOR: FALSE
-- Enable coverage: OFF
-- Git revision: Unknown
-- Performing Test HAS_FLAG__Wnull_dereference
-- Performing Test HAS_FLAG__Wnull_dereference - Success
-- Warning flag is supported by compiler: -Wnull-dereference
-- Found negative flag: -Wno-cast-function-type
   replaced with -Wcast-function-type
-- Performing Test HAS_FLAG__Wno_cast_function_type
-- Performing Test HAS_FLAG__Wno_cast_function_type - Success
-- Warning flag is supported by compiler: -Wno-cast-function-type
-- Runtime checking level: CHECK=2
-- Message stack: BOUT_USE_MSGSTACK=ON
-- Extra debug output: BOUT_USE_OUTPUT_DEBUG=OFF
-- Signal handling: BOUT_USE_SIGNAL=ON
-- Output coloring: BOUT_USE_COLOR=ON
-- Field name tracking: BOUT_USE_TRACK=ON
-- Signalling floating point exceptions: BOUT_USE_SIGFPE=OFF
-- Enable backtrace: BOUT_USE_BACKTRACE=ON
-- Performing Test HAS_PRETTY_FUNCTION
-- Performing Test HAS_PRETTY_FUNCTION - Success
-- Setting build type to 'RelWithDebInfo' as none was specified.
CMake Deprecation Warning at externalpackages/googletest/CMakeLists.txt:4 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.
  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.
-- The C compiler identification is GNU 13.1.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/lib64/openmpi/bin/mpicc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
CMake Deprecation Warning at externalpackages/googletest/googlemock/CMakeLists.txt:45 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.
  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.
CMake Deprecation Warning at externalpackages/googletest/googletest/CMakeLists.txt:56 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.
  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.
-- Found Python: /usr/bin/python3.11 (found version "3.11.4") found components: Interpreter 
-- Not building test test-laplace-hypre3d, requirement not met: BOUT_HAS_HYPRE
-- Not building test test-laplacexy2-hypre, requirement not met: BOUT_HAS_HYPRE
-- Not building test test-slepc-solver, requirement not met: BOUT_HAS_SLEPC
-- Not building test MMS-advection-arakawa, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-central, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-upwind, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-advection-weno3, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-diffusion2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-hw, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-laplace, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-advection, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-d2dx2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-d2dz2, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-diffusion, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-spatial-fci, requirement not met: zoidberg_FOUND
-- Not building test MMS-time, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building test MMS-time-petsc, requirement not met: BOUT_RUN_ALL_TESTS
-- Not building example test_laplacexy_hypre, requirement not met: BOUT_HAS_HYPRE
-- Found Doxygen: /usr/bin/doxygen (found version "1.9.7") found components: doxygen dot 
-- Found Sphinx: /usr/bin/sphinx-build  
   --------------------------------
     BOUT++ Configuration Summary
   --------------------------------
   Bundled PVODE support    : ON
   PETSc support            : ON
   SLEPc support            : OFF
   SUNDIALS support         : ON
   HYPRE support            : OFF
   NetCDF support           : ON
   FFTW support             : ON
   LAPACK support           : ON
   OpenMP support           : OFF
   Natural language support : ON
   ScoreP support           : OFF
   System UUID generator    : FALSE
   Extra debug output       : OFF
   Runtime error check level: 2
   Signal handling          : ON
   Output coloring          : ON
   Field name tracking      : ON
   Floating point exceptions: OFF
   Backtrace enabled        : ON
   RAJA enabled             : OFF
   Umpire enabled           : OFF
   Caliper enabled          : OFF
   CUDA enabled             : OFF
   Metric type              : 2D
   Python API support       : ON
   Sanitizers enabled       : None
   === Python ===
   Make sure that the tools/pylib directory is in your PYTHONPATH
   e.g. by adding to your ~/.bashrc file
       export PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib:/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib:$PYTHONPATH
*** Now run `cmake --build /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi` to compile BOUT++ ***
-- Configuring done (6.0s)
-- Generating done (0.3s)
CMake Warning:
  Manually-specified variables were not used by the project:
    CMAKE_CXX_FLAGS_RELEASE
    CMAKE_C_FLAGS_RELEASE
    CMAKE_Fortran_FLAGS_RELEASE
    CMAKE_INSTALL_DO_STRIP
    INCLUDE_INSTALL_DIR
    LIB_INSTALL_DIR
    LIB_SUFFIX
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi
+ /usr/bin/cmake --build build_openmpi -j2 --verbose
Change Dir: '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
Run Build Command(s): /usr/bin/cmake -E env VERBOSE=1 /usr/bin/gmake -f Makefile -j2
/usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea -B/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/CMakeFiles /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi//CMakeFiles/progress.marks
/usr/bin/gmake  -f CMakeFiles/Makefile2 all
gmake[1]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
/usr/bin/gmake  -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend
/usr/bin/gmake  -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake "--color="
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/externalpackages/PVODE /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
/usr/bin/gmake  -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
/usr/bin/gmake  -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[  0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvpre_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -MF CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o.d -o CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/precon/pvbbdpre.cpp
[  0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o -MF CMakeFiles/pvode.dir/source/cvode.cpp.o.d -o CMakeFiles/pvode.dir/source/cvode.cpp.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp: In function 'void* pvode::CVodeMalloc(integer, RhsFn, real, N_Vector, int, int, int, real*, void*, void*, FILE*, int, long int*, real*, void*)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:178:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'pvode::integer' {aka 'int'} [-Wformat=]
  178 | #define CVM             "CVodeMalloc-- "
      |                         ^
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:182:19: note: in expansion of macro 'CVM'
  182 | #define MSG_BAD_N CVM "N=%ld < 1 illegal.\n\n"
      |                   ^~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:496:17: note: in expansion of macro 'MSG_BAD_N'
  496 |     fprintf(fp, MSG_BAD_N, N);
      |                 ^~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:182:28: note: format string is defined here
  182 | #define MSG_BAD_N CVM "N=%ld < 1 illegal.\n\n"
      |                          ~~^
      |                            |
      |                            long int
      |                          %d
[  0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvpre_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o -MF CMakeFiles/pvpre.dir/precon/band.cpp.o.d -o CMakeFiles/pvpre.dir/precon/band.cpp.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/precon/band.cpp
In function 'pvode::CVnlsFunctional(pvode::CVodeMemRec*)',
    inlined from 'pvode::CVnls(pvode::CVodeMemRec*, int)' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:1826:45,
    inlined from 'pvode::CVStep(pvode::CVodeMemRec*)' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:1358:18,
    inlined from 'pvode::CVode(void*, double, pvode::nvec_type*, double*, int)' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:882:19:
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:1876:49: warning: 'delp' may be used uninitialized [-Wmaybe-uninitialized]
 1876 |     if ((m==maxcor) || ((m >= 2) && (del > RDIV * delp)))
      |                                                 ^
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp: In function 'pvode::CVode(void*, double, pvode::nvec_type*, double*, int)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:1843:13: note: 'delp' was declared here
 1843 |   real del, delp, dcon;
      |             ^~~~
In function 'pvode::CVNewtonIteration(pvode::CVodeMemRec*)',
    inlined from 'pvode::CVnlsNewton(pvode::CVodeMemRec*, int)' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:1944:28,
    inlined from 'pvode::CVnls(pvode::CVodeMemRec*, int)' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:1827:41,
    inlined from 'pvode::CVStep(pvode::CVodeMemRec*)' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:1358:18,
    inlined from 'pvode::CVode(void*, double, pvode::nvec_type*, double*, int)' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:882:19:
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:2021:50: warning: 'delp' may be used uninitialized [-Wmaybe-uninitialized]
 2021 |     if ((m == maxcor) || ((m >= 2) && (del > RDIV*delp))) {
      |                                                  ^
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp: In function 'pvode::CVode(void*, double, pvode::nvec_type*, double*, int)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvode.cpp:1971:13: note: 'delp' was declared here
 1971 |   real del, delp, dcon;
      |             ^~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/precon/band.cpp: In function 'pvode::integer pvode::gbfa(real**, integer, integer, integer, integer, integer*)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/precon/band.cpp:189:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  189 |     if (swap = (l != k)) {
      |         ~~~~~^~~~~~~~~~
[  0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o -MF CMakeFiles/pvode.dir/source/nvector.cpp.o.d -o CMakeFiles/pvode.dir/source/nvector.cpp.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:429: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  429 |   #pragma omp parallel for reduction(+: sum)
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:485: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  485 |   #pragma omp parallel for reduction(+: sum)
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:543: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  543 |   #pragma omp parallel for reduction(+: sum)
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:565: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  565 |   #pragma omp parallel for reduction(+: sum)
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:583: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  583 |   #pragma omp parallel for
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:698: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  698 |   #pragma omp parallel for
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:714: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  714 |   #pragma omp parallel for
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:730: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  730 |   #pragma omp parallel for
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:745: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  745 |   #pragma omp parallel for
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:761: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  761 |   #pragma omp parallel for
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:777: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  777 |   #pragma omp parallel for
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:793: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  793 |   #pragma omp parallel for
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:809: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  809 |   #pragma omp parallel for
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:824: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  824 |     #pragma omp parallel for
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:831: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  831 |     #pragma omp parallel for
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:837: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  837 |   #pragma omp parallel for
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:850: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas]
  850 |   #pragma omp parallel for
      | 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp: In function 'void pvode::N_VLinearSum(real, N_Vector, real, N_Vector, N_Vector)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:189:12: warning: unused variable 'v' [-Wunused-variable]
  189 |   N_Vector v, v1, v2;
      |            ^
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp: In function 'pvode::real pvode::N_VWL2Norm(N_Vector, N_Vector)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/nvector.cpp:533:14: warning: variable 'N_global' set but not used [-Wunused-but-set-variable]
  533 |   integer N, N_global;
      |              ^~~~~~~~
[  0%] Linking CXX shared library ../../lib/libpvpre.so
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/externalpackages/PVODE && /usr/bin/cmake -E cmake_link_script CMakeFiles/pvpre.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/pvpre.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libpvpre.so.1.0.0 -o ../../lib/libpvpre.so.1.0.0 CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o CMakeFiles/pvpre.dir/precon/band.cpp.o 
[  0%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o -MF CMakeFiles/pvode.dir/source/llnlmath.cpp.o.d -o CMakeFiles/pvode.dir/source/llnlmath.cpp.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/llnlmath.cpp
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/externalpackages/PVODE && /usr/bin/cmake -E cmake_symlink_library ../../lib/libpvpre.so.1.0.0 ../../lib/libpvpre.so.1.0.0 ../../lib/libpvpre.so
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[  0%] Built target pvpre
[  2%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -MF CMakeFiles/pvode.dir/source/cvspgmr.cpp.o.d -o CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvspgmr.cpp
[  2%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o -MF CMakeFiles/pvode.dir/source/spgmr.cpp.o.d -o CMakeFiles/pvode.dir/source/spgmr.cpp.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/spgmr.cpp
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/spgmr.cpp: In function 'int pvode::SpgmrSolve(SpgmrMem, void*, N_Vector, N_Vector, int, int, real, int, void*, N_Vector, N_Vector, ATimesFn, PSolveFn, real*, int*, int*)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/spgmr.cpp:159:8: warning: unused variable 's_r0_norm' [-Wunused-variable]
  159 |   real s_r0_norm, beta, rotation_product, r_norm, s_product, rho;
      |        ^~~~~~~~~
[  2%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o -MF CMakeFiles/pvode.dir/source/iterativ.cpp.o.d -o CMakeFiles/pvode.dir/source/iterativ.cpp.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/iterativ.cpp
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/spgmr.cpp:328:17: warning: 'krydim' may be used uninitialized [-Wmaybe-uninitialized]
  328 |     for (i=1; i <= krydim; i++) yg[i]=ZERO;
      |               ~~^~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/spgmr.cpp:161:36: note: 'krydim' was declared here
  161 |   int i, j, k, l, l_plus_1, l_max, krydim, ier, ntries;
      |                                    ^~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/spgmr.cpp:386:3: warning: 'rho' may be used uninitialized [-Wmaybe-uninitialized]
  386 |   if (rho < beta) {
      |   ^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/spgmr.cpp:159:62: note: 'rho' was declared here
  159 |   real s_r0_norm, beta, rotation_product, r_norm, s_product, rho;
      |                                                              ^~~
[  2%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o -MF CMakeFiles/pvode.dir/source/cvdiag.cpp.o.d -o CMakeFiles/pvode.dir/source/cvdiag.cpp.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/cvdiag.cpp
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[  2%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/externalpackages/PVODE && /usr/lib64/openmpi/bin/mpicxx -Dpvode_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o -MF CMakeFiles/pvode.dir/source/smalldense.cpp.o.d -o CMakeFiles/pvode.dir/source/smalldense.cpp.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/smalldense.cpp
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[  2%] Generating locale/es/libbout.gmo, _mo_file_es
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/locale/es/
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/locale/es/libbout.gmo /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/locale/es/libbout.po
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/smalldense.cpp: In function 'pvode::integer pvode::gefa(real**, integer, integer*)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/source/smalldense.cpp:82:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
   82 |     if (swap = (l != k)) {
      |         ~~~~~^~~~~~~~~~
[  5%] Generating locale/de/libbout.gmo, _mo_file_de
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/locale/de/
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/locale/de/libbout.gmo /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/locale/de/libbout.po
[  5%] Generating locale/fr/libbout.gmo, _mo_file_fr
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/locale/fr/
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/locale/fr/libbout.gmo /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/locale/fr/libbout.po
[  5%] Generating locale/zh_CN/libbout.gmo, _mo_file_zh_CN
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/locale/zh_CN/
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/locale/zh_CN/libbout.gmo /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/locale/zh_CN/libbout.po
[  8%] Generating locale/zh_TW/libbout.gmo, _mo_file_zh_TW
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/locale/zh_TW/
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea && /usr/bin/msgfmt -o /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/locale/zh_TW/libbout.gmo /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/locale/zh_TW/libbout.po
[ 11%] Linking CXX shared library ../../lib/libpvode.so
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/externalpackages/PVODE && /usr/bin/cmake -E cmake_link_script CMakeFiles/pvode.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/pvode.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libpvode.so.1.0.0 -o ../../lib/libpvode.so.1.0.0 CMakeFiles/pvode.dir/source/cvode.cpp.o CMakeFiles/pvode.dir/source/nvector.cpp.o CMakeFiles/pvode.dir/source/llnlmath.cpp.o CMakeFiles/pvode.dir/source/cvspgmr.cpp.o CMakeFiles/pvode.dir/source/spgmr.cpp.o CMakeFiles/pvode.dir/source/iterativ.cpp.o CMakeFiles/pvode.dir/source/cvdiag.cpp.o CMakeFiles/pvode.dir/source/smalldense.cpp.o 
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 11%] Built target mofiles
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/externalpackages/PVODE && /usr/bin/cmake -E cmake_symlink_library ../../lib/libpvode.so.1.0.0 ../../lib/libpvode.so.1.0.0 ../../lib/libpvode.so
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 11%] Built target pvode
/usr/bin/gmake  -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 11%] Generating bout++-time.cxx
/usr/bin/cmake -P /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/cmake/GenerateDateTimeFile.cmake
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/CMakeFiles/bout++.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
/usr/bin/gmake  -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 14%] Building CXX object CMakeFiles/bout++.dir/src/bout++.cxx.o
[ 14%] Building CXX object CMakeFiles/bout++.dir/src/field/field.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field.cxx.o -MF CMakeFiles/bout++.dir/src/field/field.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/field/field.cxx
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/bout++.cxx.o -MF CMakeFiles/bout++.dir/src/bout++.cxx.o.d -o CMakeFiles/bout++.dir/src/bout++.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/bout++.cxx
[ 14%] Building CXX object CMakeFiles/bout++.dir/src/field/field2d.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field2d.cxx.o -MF CMakeFiles/bout++.dir/src/field/field2d.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field2d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/field/field2d.cxx
[ 14%] Building CXX object CMakeFiles/bout++.dir/src/field/field3d.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field3d.cxx.o -MF CMakeFiles/bout++.dir/src/field/field3d.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field3d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/field/field3d.cxx
[ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field_data.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field_data.cxx.o -MF CMakeFiles/bout++.dir/src/field/field_data.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field_data.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/field/field_data.cxx
[ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/field_factory.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/field_factory.cxx.o -MF CMakeFiles/bout++.dir/src/field/field_factory.cxx.o.d -o CMakeFiles/bout++.dir/src/field/field_factory.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/field/field_factory.cxx
[ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/fieldgenerators.cxx.o
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[ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/fieldgroup.cxx.o
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[ 17%] Building CXX object CMakeFiles/bout++.dir/src/field/fieldperp.cxx.o
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[ 20%] Building CXX object CMakeFiles/bout++.dir/src/field/generated_fieldops.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/generated_fieldops.cxx.o -MF CMakeFiles/bout++.dir/src/field/generated_fieldops.cxx.o.d -o CMakeFiles/bout++.dir/src/field/generated_fieldops.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/field/generated_fieldops.cxx
[ 20%] Building CXX object CMakeFiles/bout++.dir/src/field/globalfield.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/globalfield.cxx.o -MF CMakeFiles/bout++.dir/src/field/globalfield.cxx.o.d -o CMakeFiles/bout++.dir/src/field/globalfield.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/field/globalfield.cxx
[ 20%] Building CXX object CMakeFiles/bout++.dir/src/field/initialprofiles.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/initialprofiles.cxx.o -MF CMakeFiles/bout++.dir/src/field/initialprofiles.cxx.o.d -o CMakeFiles/bout++.dir/src/field/initialprofiles.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/field/initialprofiles.cxx
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/vecops.cxx.o -MF CMakeFiles/bout++.dir/src/field/vecops.cxx.o.d -o CMakeFiles/bout++.dir/src/field/vecops.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/field/vecops.cxx
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/field/vector2d.cxx.o -MF CMakeFiles/bout++.dir/src/field/vector2d.cxx.o.d -o CMakeFiles/bout++.dir/src/field/vector2d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/field/vector2d.cxx
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplace/impls/hypre3d/hypre3d_laplace.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplace/impls/hypre3d/hypre3d_laplace.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplace/impls/hypre3d/hypre3d_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplace/impls/hypre3d/hypre3d_laplace.cxx
[ 35%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplace/invert_laplace.cxx.o
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[ 38%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexy/laplacexy.cxx.o
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplacexy2/laplacexy2.cxx
[ 38%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexy2/laplacexy2_hypre.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplacexy2/laplacexy2_hypre.cxx
In file included from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplacexy2/laplacexy2_hypre.cxx:1:
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invert/laplacexy2_hypre.hxx:41:2: warning: #warning LaplaceXY requires Hypre. No LaplaceXY available [-Wcpp]
   41 | #warning LaplaceXY requires Hypre. No LaplaceXY available
      |  ^~~~~~~
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplacexz/laplacexz.cxx
[ 41%] Building CXX object CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o -MF CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/parderiv/impls/cyclic/cyclic.cxx
[ 41%] Building CXX object CMakeFiles/bout++.dir/src/invert/parderiv/invert_parderiv.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/parderiv/invert_parderiv.cxx.o -MF CMakeFiles/bout++.dir/src/invert/parderiv/invert_parderiv.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/parderiv/invert_parderiv.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/parderiv/invert_parderiv.cxx
[ 41%] Building CXX object CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_factory.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_factory.cxx
[ 44%] Building CXX object CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_region.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_region.cxx
[ 44%] Building CXX object CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/boundary_standard.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx: In function 'void verifyNumPoints(BoundaryRegion*, int)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx:80:21: warning: 'virtual bool Mesh::firstY() const' is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
   80 |     if (mesh->firstY()) {
      |         ~~~~~~~~~~~~^~
In file included from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/field_factory.hxx:32,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/boundary_standard.hxx:9,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx:1:
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:441:66: note: declared here
  441 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx:83:20: warning: 'virtual bool Mesh::lastY() const' is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
   83 |     if (mesh->lastY()) {
      |         ~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:445:65: note: declared here
  445 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx: In member function 'virtual void BoundaryDirichlet::apply(Field3D&, BoutReal)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx:473:31: warning: 'virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)' is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
  473 |             val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
      |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  474 |                                t);
      |                                ~~
In file included from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/field_data.hxx:51,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/field.hxx:39,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/field2d.hxx:34,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/boundary_op.hxx:9,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/boundary_standard.hxx:6:
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/sys/expressionparser.hxx:70:3: note: declared here
   70 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx:517:33: warning: 'virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)' is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
  517 |               val = fg->generate(xnorm, TWOPI * ynorm,
      |                     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
  518 |                                  TWOPI * (zk - 0.5) / (mesh->LocalNz), t);
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/sys/expressionparser.hxx:70:3: note: declared here
   70 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx: In member function 'virtual void BoundaryDirichlet_O3::apply(Field3D&, BoutReal)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx:978:31: warning: 'virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)' is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
  978 |             val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
      |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  979 |                                t);
      |                                ~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/sys/expressionparser.hxx:70:3: note: declared here
   70 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx: In member function 'virtual void BoundaryDirichlet_O4::apply(Field3D&, BoutReal)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx:1444:31: warning: 'virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)' is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
 1444 |             val = fg->generate(xnorm, TWOPI * ynorm, TWOPI * (zk - 0.5) / (mesh->LocalNz),
      |                   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1445 |                                t);
      |                                ~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/sys/expressionparser.hxx:70:3: note: declared here
   70 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx: In member function 'virtual void BoundaryNeumann::apply(Field3D&, BoutReal)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/boundary_standard.cxx:2152:33: warning: 'virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)' is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
 2152 |               val = fg->generate(xnorm, TWOPI * ynorm,
      |                     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
 2153 |                                  TWOPI * (zk - 0.5) / (mesh->LocalNz), t);
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/sys/expressionparser.hxx:70:3: note: declared here
   70 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
[ 44%] Building CXX object CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/coordinates.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/coordinates.cxx
[ 44%] Building CXX object CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/coordinates_accessor.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/coordinates_accessor.cxx
[ 47%] Building CXX object CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromfile.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/data/gridfromfile.cxx
[ 47%] Building CXX object CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/data/gridfromoptions.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/data/gridfromoptions.cxx
[ 47%] Building CXX object CMakeFiles/bout++.dir/src/mesh/difops.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/difops.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/difops.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/difops.cxx
[ 47%] Building CXX object CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/fv_ops.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/fv_ops.cxx
[ 50%] Building CXX object CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/impls/bout/boutmesh.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/impls/bout/boutmesh.cxx
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/fv_ops.cxx: In function 'FV::communicateFluxes(Field3D&)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/fv_ops.cxx:517:15: warning: 'xout' may be used uninitialized [-Wmaybe-uninitialized]
  517 |     mesh->wait(xout);
      |     ~~~~~~~~~~^~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/fv_ops.cxx:488:20: note: 'xout' was declared here
  488 |   comm_handle xin, xout;
      |                    ^~~~
[ 50%] Building CXX object CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/index_derivs.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/index_derivs.cxx
In file included from /usr/include/c++/13/bits/shared_ptr.h:53,
                 from /usr/include/c++/13/memory:80,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/field.hxx:36,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/field2d.hxx:34,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/options.hxx:43,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/deriv_store.hxx:42,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:48,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/impls/bout/boutmesh.hxx:8,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/impls/bout/boutmesh.cxx:36:
In member function 'std::__shared_ptr<ArrayData<double>, (__gnu_cxx::_Lock_policy)2>::operator bool() const',
    inlined from 'std::operator==<ArrayData<double> >(std::shared_ptr<ArrayData<double> > const&, decltype(nullptr))bool' at /usr/include/c++/13/bits/shared_ptr.h:562:14,
    inlined from 'Array<double, ArrayData<double> >::empty() const' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/array.hxx:270:44,
    inlined from 'Field3D::isAllocated() const' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/field3d.hxx:203:48,
    inlined from 'BoutMesh::pack_data(std::vector<FieldData*, std::allocator<FieldData*> > const&, int, int, int, int, double*)' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/impls/bout/boutmesh.cxx:2262:7:
/usr/include/c++/13/bits/shared_ptr_base.h:1670:16: warning: potential null pointer dereference [-Wnull-dereference]
 1670 |       { return _M_ptr != nullptr; }
      |                ^~~~~~
In member function 'std::__shared_ptr<ArrayData<double>, (__gnu_cxx::_Lock_policy)2>::operator bool() const',
    inlined from 'std::operator==<ArrayData<double> >(std::shared_ptr<ArrayData<double> > const&, decltype(nullptr))bool' at /usr/include/c++/13/bits/shared_ptr.h:562:14,
    inlined from 'Array<double, ArrayData<double> >::empty() const' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/array.hxx:270:44,
    inlined from 'Field2D::isAllocated() const' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/field2d.hxx:106:48,
    inlined from 'BoutMesh::pack_data(std::vector<FieldData*, std::allocator<FieldData*> > const&, int, int, int, int, double*)' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/impls/bout/boutmesh.cxx:2273:7:
/usr/include/c++/13/bits/shared_ptr_base.h:1670:16: warning: potential null pointer dereference [-Wnull-dereference]
 1670 |       { return _M_ptr != nullptr; }
      |                ^~~~~~
[ 50%] Building CXX object CMakeFiles/bout++.dir/src/mesh/interpolation_xz.cxx.o
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[ 58%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetric.cxx.o
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[ 58%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel/shiftedmetricinterp.cxx.o
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[ 58%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o
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[ 58%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/parallel_boundary_region.cxx
[ 58%] Building CXX object CMakeFiles/bout++.dir/src/mesh/surfaceiter.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/surfaceiter.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/surfaceiter.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/surfaceiter.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/mesh/surfaceiter.cxx
[ 61%] Building CXX object CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o -MF CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/physics/gyro_average.cxx
[ 61%] Building CXX object CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o
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/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o -MF CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/smoothing.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/physics/smoothing.cxx
[ 61%] Building CXX object CMakeFiles/bout++.dir/src/physics/snb.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/snb.cxx.o -MF CMakeFiles/bout++.dir/src/physics/snb.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/snb.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/physics/snb.cxx
[ 64%] Building CXX object CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o -MF CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/sourcex.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/physics/sourcex.cxx
[ 64%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/adams_bashforth/adams_bashforth.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/adams_bashforth/adams_bashforth.cxx
[ 64%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/arkode/arkode.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/arkode/arkode.cxx
[ 64%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/cvode/cvode.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/cvode/cvode.cxx
[ 67%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/euler/euler.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/euler/euler.cxx
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/cvode/cvode.cxx: In member function 'virtual int CvodeSolver::init()':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/cvode/cvode.cxx:378:33: warning: 'int CVSpilsSetLinearSolver(void*, SUNLinearSolver)' is deprecated: use CVodeSetLinearSolver instead [-Wdeprecated-declarations]
  378 |       if (CVSpilsSetLinearSolver(cvode_mem, sun_solver) != CV_SUCCESS) {
      |           ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/cvode/cvode.cxx:49:
/usr/include/openmpi-x86_64/cvode/cvode_spils.h:43:5: note: declared here
   43 | int CVSpilsSetLinearSolver(void *cvode_mem, SUNLinearSolver LS);
      |     ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/cvode/cvode.cxx:416:37: warning: 'int CVSpilsSetPreconditioner(void*, CVSpilsPrecSetupFn, CVSpilsPrecSolveFn)' is deprecated: use CVodeSetPreconditioner instead [-Wdeprecated-declarations]
  416 |         if (CVSpilsSetPreconditioner(cvode_mem, nullptr, cvode_pre_shim)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/cvode/cvode_spils.h:49:5: note: declared here
   49 | int CVSpilsSetPreconditioner(void *cvode_mem, CVSpilsPrecSetupFn pset,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/cvode/cvode.cxx:428:33: warning: 'int CVSpilsSetLinearSolver(void*, SUNLinearSolver)' is deprecated: use CVodeSetLinearSolver instead [-Wdeprecated-declarations]
  428 |       if (CVSpilsSetLinearSolver(cvode_mem, sun_solver) != CV_SUCCESS) {
      |           ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/cvode/cvode_spils.h:43:5: note: declared here
   43 | int CVSpilsSetLinearSolver(void *cvode_mem, SUNLinearSolver LS);
      |     ^~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/cvode/cvode.cxx:442:29: warning: 'int CVSpilsSetJacTimes(void*, CVSpilsJacTimesSetupFn, CVSpilsJacTimesVecFn)' is deprecated: use CVodeSetJacTimes instead [-Wdeprecated-declarations]
  442 |       if (CVSpilsSetJacTimes(cvode_mem, nullptr, cvode_jac) != CV_SUCCESS) {
      |           ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/cvode/cvode_spils.h:53:5: note: declared here
   53 | int CVSpilsSetJacTimes(void *cvode_mem, CVSpilsJacTimesSetupFn jtsetup,
      |     ^~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/cvode/cvode.cxx: In member function 'virtual int CvodeSolver::run()':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/cvode/cvode.cxx:533:28: warning: 'int CVSpilsGetNumPrecSolves(void*, long int*)' is deprecated: use CVodeGetNumPrecSolves instead [-Wdeprecated-declarations]
  533 |     CVSpilsGetNumPrecSolves(cvode_mem, &temp_long_int);
      |     ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/cvode/cvode_spils.h:64:5: note: declared here
   64 | int CVSpilsGetNumPrecSolves(void *cvode_mem, long int *npsolves);
      |     ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/cvode/cvode.cxx:535:26: warning: 'int CVSpilsGetNumLinIters(void*, long int*)' is deprecated: use CVodeGetNumLinIters instead [-Wdeprecated-declarations]
  535 |     CVSpilsGetNumLinIters(cvode_mem, &temp_long_int);
      |     ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/cvode/cvode_spils.h:67:5: note: declared here
   67 | int CVSpilsGetNumLinIters(void *cvode_mem, long int *nliters);
      |     ^~~~~~~~~~~~~~~~~~~~~
[ 67%] Building CXX object CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o -MF CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o.d -o CMakeFiles/bout++.dir/src/solver/impls/ida/ida.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/ida/ida.cxx
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/ida/ida.cxx: In member function 'virtual int IdaSolver::init()':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/ida/ida.cxx:199:30: warning: 'int IDASpilsSetLinearSolver(void*, SUNLinearSolver)' is deprecated: use IDASetLinearSolver instead [-Wdeprecated-declarations]
  199 |   if (IDASpilsSetLinearSolver(idamem, sun_solver) != IDA_SUCCESS) {
      |       ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/ida/ida.cxx:45:
/usr/include/openmpi-x86_64/ida/ida_spils.h:44:5: note: declared here
   44 | int IDASpilsSetLinearSolver(void *ida_mem, SUNLinearSolver LS);
      |     ^~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/solver/impls/ida/ida.cxx:234:36: warning: 'int IDASpilsSetPreconditioner(void*, IDASpilsPrecSetupFn, IDASpilsPrecSolveFn)' is deprecated: use IDASetPreconditioner instead [-Wdeprecated-declarations]
  234 |       if (IDASpilsSetPreconditioner(idamem, nullptr, ida_pre_shim)) {
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/openmpi-x86_64/ida/ida_spils.h:47:5: note: declared here
   47 | int IDASpilsSetPreconditioner(void *ida_mem, IDASpilsPrecSetupFn pset,
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~
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[ 79%] Building CXX object CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o -MF CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/boutexception.cxx
[ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/derivs.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/derivs.cxx.o -MF CMakeFiles/bout++.dir/src/sys/derivs.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/derivs.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/derivs.cxx
[ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o -MF CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/expressionparser.cxx
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/expressionparser.cxx: In member function 'virtual double FieldGenerator::generate(const bout::generator::Context&)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/expressionparser.cxx:43:18: warning: 'virtual double FieldGenerator::generate(BoutReal, BoutReal, BoutReal, BoutReal)' is deprecated: This will be removed in a future version. Implementations should override the Context version of this function. [-Wdeprecated-declarations]
   43 |   return generate(ctx.x(), ctx.y(), ctx.z(), ctx.t());
      |          ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/expressionparser.cxx:25:
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/sys/expressionparser.hxx:70:3: note: declared here
   70 |   generate(BoutReal x, BoutReal y, BoutReal z, BoutReal t) {
      |   ^~~~~~~~
[ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o -MF CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/generator_context.cxx
[ 82%] Building CXX object CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o -MF CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/hyprelib.cxx
[ 85%] Building CXX object CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o -MF CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/msg_stack.cxx
[ 85%] Building CXX object CMakeFiles/bout++.dir/src/sys/options.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/options.cxx.o -MF CMakeFiles/bout++.dir/src/sys/options.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/options.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/options.cxx
[ 85%] Building CXX object CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o -MF CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/options/options_ini.cxx
[ 85%] Building CXX object CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o -MF CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/options/options_netcdf.cxx
In file included from /usr/include/openmpi-x86_64/ncFile.h:2,
                 from /usr/include/openmpi-x86_64/netcdf:16,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/options/options_netcdf.cxx:14:
/usr/include/openmpi-x86_64/ncGroup.h:18:14: warning: 'netCDF::file_id' defined but not used [-Wunused-variable]
   18 |   static int file_id;
      |              ^~~~~~~
[ 88%] Building CXX object CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o -MF CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/optionsreader.cxx
[ 88%] Building CXX object CMakeFiles/bout++.dir/src/sys/output.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/output.cxx.o -MF CMakeFiles/bout++.dir/src/sys/output.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/output.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/output.cxx
[ 88%] Building CXX object CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o -MF CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/petsclib.cxx
[ 88%] Building CXX object CMakeFiles/bout++.dir/src/sys/range.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/range.cxx.o -MF CMakeFiles/bout++.dir/src/sys/range.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/range.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/range.cxx
[ 91%] Building CXX object CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o -MF CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/slepclib.cxx
[ 91%] Building CXX object CMakeFiles/bout++.dir/src/sys/timer.cxx.o
/usr/lib64/openmpi/bin/mpicxx -DBOUT_FLAGS_STRING="  -Wall -Wextra     -Wnull-dereference   -Wno-cast-function-type   -DCHECK=2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-O2 -g -DNDEBUG" -DCHECK=2 -DFMT_SHARED -Dbout___EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/sys/timer.cxx.o -MF CMakeFiles/bout++.dir/src/sys/timer.cxx.o.d -o CMakeFiles/bout++.dir/src/sys/timer.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/sys/timer.cxx
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/usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplace/impls/spt/spt.cxx: In member function '__ct_base ':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplace/impls/spt/spt.cxx:68:37: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   68 |   alldata = new SPT_data[ye - ys + 1];
      |                                     ^
/usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here
  128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
/usr/bin/cmake -E cmake_symlink_library lib/libbout++.so.5.0.0 lib/libbout++.so.5.0.0 lib/libbout++.so
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[ 94%] Built target bout++
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gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.11 generate.py resolve_enum.pxd.jinja /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/resolve_enum.pxd
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.11 generate.py boutcpp.pxd.jinja /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/boutcpp.pxd
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.11 generate.py boutpp.pyx.jinja /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/boutpp.pyx
[100%] Generating helper.cxx
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.11 generate.py helper.cxx.jinja /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/helper.cxx
[100%] Generating helper.h
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.11 generate.py helper.h.jinja /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/helper.h
[100%] Cythonizing python interface
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy boutpp.pyx libboutpp.pyx
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/python3.11 -m cython libboutpp.pyx --cplus -3 -X binding=True -X embedsignature=True
warning: resolve_enum.pxd:49:21: 'deflt' redeclared 
warning: resolve_enum.pxd:189:24: 'Standard' redeclared 
warning: resolve_enum.pxd:223:15: 'Standard' redeclared 
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
/usr/bin/gmake  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[100%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/libboutpp.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_311_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build -I/usr/include/python3.11 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/libboutpp.cpp.o -MF CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/libboutpp.cpp.o.d -o CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/libboutpp.cpp.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp
[100%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/helper.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_311_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build -I/usr/include/python3.11 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/helper.cxx.o -MF CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/helper.cxx.o.d -o CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/helper.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/helper.cxx
In file included from /usr/include/numpy/ndarraytypes.h:1940,
                 from /usr/include/numpy/ndarrayobject.h:12,
                 from /usr/include/numpy/arrayobject.h:5,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:793:
/usr/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
[100%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/boutexception_helper.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_311_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build -I/usr/include/python3.11 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/boutexception_helper.cxx.o -MF CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/boutexception_helper.cxx.o.d -o CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/boutexception_helper.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/boutexception_helper.cxx
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:30516:46: warning: '__pyx_obj_9libboutpp_Vector2D* __pyx_f_9libboutpp_v2dFromObj(Vector2D)' defined but not used [-Wunused-function]
30516 | static struct __pyx_obj_9libboutpp_Vector2D *__pyx_f_9libboutpp_v2dFromObj(Vector2D __pyx_v_i) {
      |                                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp: In function '__pyx_f_12resolve_enum_resolve_cell_loc(_object*)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56447:10: warning: '__pyx_r' may be used uninitialized [-Wmaybe-uninitialized]
56447 |   return __pyx_r;
      |          ^~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56090:12: note: '__pyx_r' was declared here
56090 |   CELL_LOC __pyx_r;
      |            ^~~~~~~
In function '__pyx_pf_9libboutpp_48bracket(_object*, __pyx_obj_9libboutpp_Field3D*, __pyx_obj_9libboutpp_Field3D*, _object*, _object*)',
    inlined from '__pyx_pw_9libboutpp_49bracket(_object*, _object*, _object*)' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:48665:42:
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:48741:65: warning: '__pyx_r' may be used uninitialized [-Wmaybe-uninitialized]
48741 |   __pyx_t_1 = ((PyObject *)__pyx_f_9libboutpp_f3dFromObj(bracket((__pyx_v_a->cobj[0]), (__pyx_v_b->cobj[0]), __pyx_v_method_, __pyx_v_outloc_))); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 2901, __pyx_L1_error)
      |                                                          ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp: In function '__pyx_pw_9libboutpp_49bracket(_object*, _object*, _object*)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57958:18: note: '__pyx_r' was declared here
57958 |   BRACKET_METHOD __pyx_r;
      |                  ^~~~~~~
[100%] Linking CXX shared library libboutpp.cpython-311-x86_64-linux-gnu.so
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E cmake_link_script CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libboutpp.cpython-311-x86_64-linux-gnu.so -o libboutpp.cpython-311-x86_64-linux-gnu.so "CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/libboutpp.cpp.o" "CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/helper.cxx.o" "CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/boutexception_helper.cxx.o"  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib: ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[100%] Built target boutpp.cpython-311-x86_64-linux-gnu
/usr/bin/gmake  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color="
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[100%] Building python interface
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpython-311-x86_64-linux-gnu.so /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-311-x86_64-linux-gnu.so
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/../boutpp/__init__.py
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[100%] Built target boutpp
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reading sources... [ 97%] user_docs/time_integration
reading sources... [100%] user_docs/variable_init
/usr/lib/python3.11/site-packages/boutdata/collect.py:docstring of boutdata.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them
WARNING: autodoc: failed to import module 'mayavi2' from module 'boutdata'; the following exception was raised:
No module named 'enthought'
/usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.shift_v3_to_v4:5: ERROR: Unexpected indentation.
/usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart:3: WARNING: Block quote ends without a blank line; unexpected unindent.
/usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.normal:56: WARNING: Footnote [1] is not referenced.
WARNING: autodoc: failed to import module 'boutpp'; the following exception was raised:
No module named 'boutpp'
WARNING: autodoc: failed to import module 'analyse_equil_2' from module 'boututils'; the following exception was raised:
No module named 'crosslines'
WARNING: autodoc: failed to import module 'anim' from module 'boututils'; the following exception was raised:
No module named 'tvtk'
WARNING: autodoc: failed to import module 'boutgrid' from module 'boututils'; the following exception was raised:
No module named 'tvtk'
/usr/lib/python3.11/site-packages/boututils/calculus.py:docstring of boututils.calculus.deriv2D:14: ERROR: Unexpected indentation.
WARNING: autodoc: failed to import module 'crosslines' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'efit_analyzer' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'fft_deriv' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'int_func' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'mode_structure' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'moment_xyzt' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'radial_grid' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'surface_average' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'volume_integral' from module 'boututils'; the following exception was raised:
No module named 'past'
WARNING: autodoc: failed to import module 'zoidberg'; the following exception was raised:
No module named 'zoidberg'
WARNING: autodoc: failed to import module 'boundary' from module 'zoidberg'; the following exception was raised:
No module named 'zoidberg'
WARNING: autodoc: failed to import module 'field' from module 'zoidberg'; the following exception was raised:
No module named 'zoidberg'
WARNING: autodoc: failed to import module 'fieldtracer' from module 'zoidberg'; the following exception was raised:
No module named 'zoidberg'
WARNING: autodoc: failed to import module 'grid' from module 'zoidberg'; the following exception was raised:
No module named 'zoidberg'
WARNING: autodoc: failed to import module 'plot' from module 'zoidberg'; the following exception was raised:
No module named 'zoidberg'
WARNING: autodoc: failed to import module 'poloidal_grid' from module 'zoidberg'; the following exception was raised:
No module named 'zoidberg'
WARNING: autodoc: failed to import module 'progress' from module 'zoidberg'; the following exception was raised:
No module named 'zoidberg'
WARNING: autodoc: failed to import module 'rzline' from module 'zoidberg'; the following exception was raised:
No module named 'zoidberg'
WARNING: autodoc: failed to import module 'zoidberg' from module 'zoidberg'; the following exception was raised:
No module named 'zoidberg'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/api_reference.rst:4: WARNING: toctree glob pattern '_breathe_autogen/*' didn't match any documents
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/file_io.rst:114: ERROR: Unknown interpreted text role "py".
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/user_docs/boundary_options.rst:120: WARNING: Footnote [#] is not referenced.
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/user_docs/installing.rst:447: WARNING: Title underline too short.
Working with an active ``conda`` environment
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/user_docs/installing.rst:453: ERROR: Unexpected indentation.
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/user_docs/installing.rst:454: WARNING: Block quote ends without a blank line; unexpected unindent.
/usr/lib/python3.11/site-packages/boututils/__init__.py:docstring of boututils:1: WARNING: duplicate object description of boututils, other instance in _apidoc/boututils, use :noindex: for one of them
/usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata:1: WARNING: duplicate object description of boutdata, other instance in _apidoc/boutdata, use :noindex: for one of them
/usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata.collect.attributes:1: WARNING: duplicate object description of boutdata.attributes, other instance in _apidoc/boutdata, use :noindex: for one of them
/usr/lib/python3.11/site-packages/boutdata/__init__.py:docstring of boutdata.collect.collect:1: WARNING: duplicate object description of boutdata.collect, other instance in _apidoc/boutdata, use :noindex: for one of them
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/user_docs/running_bout.rst:463: WARNING: Literal block expected; none found.
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... WARNING: unsupported theme option 'repository_url' given
WARNING: unsupported theme option 'path_to_docs' given
WARNING: unsupported theme option 'use_edit_page_button' given
WARNING: unsupported theme option 'use_repository_button' given
WARNING: unsupported theme option 'use_issues_button' given
WARNING: unsupported theme option 'home_page_in_toc' given
done
writing output... [  2%] _apidoc/boutdata
writing output... [  4%] _apidoc/boutpp
writing output... [  6%] _apidoc/boututils
writing output... [  8%] _apidoc/zoidberg
writing output... [ 10%] api_reference
writing output... [ 13%] developer_docs/code_layout
writing output... [ 15%] developer_docs/contributing
writing output... [ 17%] developer_docs/data_types
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writing output... [ 23%] developer_docs/mesh
writing output... [ 26%] developer_docs/natural_language
writing output... [ 28%] developer_docs/performance_profiling
writing output... [ 30%] developer_docs/petsc_interface
writing output... [ 32%] index
writing output... [ 34%] user_docs/BOUT_Gradperp_op
writing output... [ 36%] user_docs/advanced_install
writing output... [ 39%] user_docs/algebraic_operators
writing output... [ 41%] user_docs/boundary_options
writing output... [ 43%] user_docs/bout_functions_for_physics
writing output... [ 45%] user_docs/bout_options
writing output... [ 47%] user_docs/coordinates
writing output... [ 50%] user_docs/differential_operators
writing output... [ 52%] user_docs/eigenvalue_solver
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writing output... [ 56%] user_docs/input_grids
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writing output... [ 71%] user_docs/nonlocal
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writing output... [ 78%] user_docs/petsc
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writing output... [ 82%] user_docs/preconditioning
writing output... [ 84%] user_docs/python
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writing output... [ 89%] user_docs/quickstart
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writing output... [100%] user_docs/variable_init
/usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.addnoise:1: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator.normal'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 5]
    numpy.random.Generator.normal
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5]
      numpy.random.Generator.normal
      -----^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        numpy.random.Generator.normal
        -----^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        numpy.random.Generator.normal
        -----^
/usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.addnoise:1: WARNING: Unparseable C++ cross-reference: 'numpy.random.Generator'
Error in cross-reference.
If shorthand ref:
  Invalid C++ declaration: Expected end of definition. [error at 5]
    numpy.random.Generator
    -----^
If full function ref:
  Error when parsing function declaration.
  If the function has no return type:
    Error in declarator or parameters-and-qualifiers
    Invalid C++ declaration: Expecting "(" in parameters-and-qualifiers. [error at 5]
      numpy.random.Generator
      -----^
  If the function has a return type:
    Error in declarator or parameters-and-qualifiers
    If pointer to member declarator:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        numpy.random.Generator
        -----^
    If declarator-id:
      Invalid C++ declaration: Expected identifier in nested name. [error at 5]
        numpy.random.Generator
        -----^
/usr/lib/python3.11/site-packages/boutdata/restart.py:docstring of boutdata.restart.addnoise:1: WARNING: undefined label: 'random-quick-start'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:81: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:87: WARNING: unknown document: '../_breathe_autogen/file/field2d_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:93: WARNING: unknown document: '../_breathe_autogen/file/field3d_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:100: WARNING: unknown document: '../_breathe_autogen/file/field__data_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:105: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:112: WARNING: unknown document: '../_breathe_autogen/file/initialprofiles_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/vecops_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:117: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:124: WARNING: unknown document: '../_breathe_autogen/file/vector2d_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:129: WARNING: unknown document: '../_breathe_autogen/file/vector3d_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:133: WARNING: unknown document: '../_breathe_autogen/file/where_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft__fftw_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:139: WARNING: unknown document: '../_breathe_autogen/file/fft_8hxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:148: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:154: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8hxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:156: WARNING: unknown document: '../_breathe_autogen/file/serial__tri_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:160: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8hxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:162: WARNING: unknown document: '../_breathe_autogen/file/serial__band_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:166: WARNING: unknown document: '../_breathe_autogen/file/spt_8hxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:168: WARNING: unknown document: '../_breathe_autogen/file/spt_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:173: WARNING: unknown document: '../_breathe_autogen/file/invert__parderiv_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:181: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:183: WARNING: unknown document: '../_breathe_autogen/file/cyclic_8hxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:187: WARNING: unknown document: '../_breathe_autogen/file/lapack__routines_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:191: WARNING: unknown document: '../_breathe_autogen/file/boundary__factory_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:195: WARNING: unknown document: '../_breathe_autogen/file/boundary__region_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:200: WARNING: unknown document: '../_breathe_autogen/file/boundary__standard_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:204: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:204: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:209: WARNING: unknown document: '../_breathe_autogen/file/interpolation_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:212: WARNING: unknown document: '../_breathe_autogen/file/mesh_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:220: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:224: WARNING: unknown document: '../_breathe_autogen/file/boutmesh_8hxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:229: WARNING: unknown document: '../_breathe_autogen/file/gyro__average_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:231: WARNING: unknown document: '../_breathe_autogen/file/smoothing_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:234: WARNING: unknown document: '../_breathe_autogen/file/sourcex_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:240: WARNING: unknown document: '../_breathe_autogen/file/solver_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:247: WARNING: unknown document: '../_breathe_autogen/file/cvode_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:251: WARNING: unknown document: '../_breathe_autogen/file/cvode_8hxx'
generating indices... /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:255: WARNING: unknown document: '../_breathe_autogen/file/ida_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:259: WARNING: unknown document: '../_breathe_autogen/file/ida_8hxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:263: WARNING: unknown document: '../_breathe_autogen/file/petsc_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:266: WARNING: unknown document: '../_breathe_autogen/file/petsc_8hxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:270: WARNING: unknown document: '../_breathe_autogen/file/pvode_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:274: WARNING: unknown document: '../_breathe_autogen/file/pvode_8hxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:278: WARNING: unknown document: '../_breathe_autogen/file/boutcomm_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:280: WARNING: unknown document: '../_breathe_autogen/file/boutexception_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/derivs_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:283: WARNING: unknown document: '../_breathe_autogen/file/difops_8cxx'
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/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:300: WARNING: unknown document: '../_breathe_autogen/file/optionsreader_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:302: WARNING: unknown document: '../_breathe_autogen/file/output_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/code_layout.rst:304: WARNING: unknown document: '../_breathe_autogen/file/range_8cxx'
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/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/developer_docs/mesh.rst:31: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field2d_8hxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/field3d_8hxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/user_docs/algebraic_operators.rst:8: WARNING: unknown document: '../_breathe_autogen/file/fieldperp_8hxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/user_docs/differential_operators.rst:530: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/user_docs/differential_operators.rst:538: WARNING: unknown document: '../_breathe_autogen/file/fv__ops_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/user_docs/laplacian.rst:185: WARNING: unknown document: '../_breathe_autogen/file/invert__laplace_8cxx'
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/user_docs/output_and_post.rst:581: WARNING: Could not lex literal_block as "mathematica". Highlighting skipped.
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual/sphinx/user_docs/time_integration.rst:1013: WARNING: unknown document: '../_breathe_autogen/file/bout_09_09_8cxx'
genindex py-modindex done
writing additional pages... search done
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dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 118 warnings.
The HTML pages are in docs.
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/manual && /usr/bin/cmake -E echo Generated\ HTML\ docs\ in\ file:///builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/manual/docs/index.html
Generated HTML docs in file:///builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/manual/docs/index.html
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
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gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/manual /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/manual /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/manual/CMakeFiles/docs.dir/DependInfo.cmake "--color="
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
/usr/bin/gmake  -f manual/CMakeFiles/docs.dir/build.make manual/CMakeFiles/docs.dir/build
gmake[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
gmake[2]: Nothing to be done for 'manual/CMakeFiles/docs.dir/build'.
gmake[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[100%] Built target docs
gmake[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/CMakeFiles 0
+ '[' openmpi = mpich ']'
+ '[' openmpi = openmpi ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/openmpi/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/openmpi-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/openmpi-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64
+ eval 'unset MPI_COMPILER;
unset LD_LIBRARY_PATH;
MANPATH=/usr/share/man:; export MANPATH;
unset MPI_INCLUDE;
unset MPI_MAN;
unset _LMFILES_;
unset LOADEDMODULES;
PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
unset MPI_PYTHON3_SITEARCH;
unset MPI_HOME;
unset MPI_FORTRAN_MOD_DIR;
unset __MODULES_LMALTNAME;
unset __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH;
unset MPI_SUFFIX;
unset MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
unset MPI_LIB;
PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
unset MPI_BIN;
test 0;'
++ unset MPI_COMPILER
++ unset LD_LIBRARY_PATH
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset MPI_MAN
++ unset _LMFILES_
++ unset LOADEDMODULES
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_HOME
++ unset MPI_FORTRAN_MOD_DIR
++ unset __MODULES_LMALTNAME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SUFFIX
++ unset MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_LIB
++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.g0Ecy1
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64
++ dirname /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd BOUT++-v5.0.0.dev10626+gd935fa1ea
+ for mpi in mpich openmpi
+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/mpich-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/mpich-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64
+ eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH;
MPI_COMPILER=mpich-x86_64; export MPI_COMPILER;
MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/mpich-x86_64; export MPI_INCLUDE;
MPI_MAN=/usr/share/man/mpich-x86_64; export MPI_MAN;
MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH;
_LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64; export _LMFILES_;
LOADEDMODULES=mpi/mpich-x86_64; export LOADEDMODULES;
PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/mpich; export MPI_PYTHON3_SITEARCH;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR;
MPI_HOME=/usr/lib64/mpich; export MPI_HOME;
__MODULES_LMCONFLICT=mpi/mpich-x86_64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SYSCONFIG=/etc/mpich-x86_64; export MPI_SYSCONFIG;
MPI_SUFFIX=_mpich; export MPI_SUFFIX;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH;
MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB;
PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN;
test 0;'
++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib
++ export LD_LIBRARY_PATH
++ MPI_COMPILER=mpich-x86_64
++ export MPI_COMPILER
++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/mpich-x86_64
++ export MPI_INCLUDE
++ MPI_MAN=/usr/share/man/mpich-x86_64
++ export MPI_MAN
++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON_SITEARCH
++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64
++ export _LMFILES_
++ LOADEDMODULES=mpi/mpich-x86_64
++ export LOADEDMODULES
++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/mpich
++ export MPI_PYTHON3_SITEARCH
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich
++ export MPI_FORTRAN_MOD_DIR
++ MPI_HOME=/usr/lib64/mpich
++ export MPI_HOME
++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SYSCONFIG=/etc/mpich-x86_64
++ export MPI_SYSCONFIG
++ MPI_SUFFIX=_mpich
++ export MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON2_SITEARCH
++ MPI_LIB=/usr/lib64/mpich/lib
++ export MPI_LIB
++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/mpich/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ DESTDIR=/builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64
+ /usr/bin/cmake --install build_mpich
-- Install configuration: "RelWithDebInfo"
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/python3.11/site-packages/mpich/boutpp/libboutpp.cpython-311-x86_64-linux-gnu.so
-- Set runtime path of "/builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/python3.11/site-packages/mpich/boutpp/libboutpp.cpython-311-x86_64-linux-gnu.so" to ""
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/python3.11/site-packages/mpich/boutpp/__init__.py
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/mpich/lib/libpvode.so.1.0.0
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/mpich/lib/libpvode.so
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/mpich/lib/libpvpre.so.1.0.0
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/mpich/lib/libpvpre.so
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/pvode
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/pvode/nvector.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/pvode/vector.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/pvode/spgmr.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/pvode/smalldense.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/pvode/pvbbdpre.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/pvode/llnltyps.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/pvode/llnlmath.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/pvode/iterativ.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/pvode/cvspgmr.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/pvode/cvode.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/pvode/cvdiag.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/pvode/band.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/mpich/lib/cmake/PVODE/PVODETargets.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/mpich/lib/cmake/PVODE/PVODETargets-relwithdebinfo.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/locale/es/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/locale/de/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/locale/fr/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/locale/zh_CN/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/locale/zh_TW/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/mpich/lib/libbout++.so.5.0.0
-- Set runtime path of "/builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/mpich/lib/libbout++.so.5.0.0" to ""
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/mpich/lib/libbout++.so
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/where.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/vector3d.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/vector2d.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/vecops.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/utils.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/unused.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/stencils.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/sourcex.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/smoothing.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/parallel_boundary_region.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/parallel_boundary_op.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/output.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/optionsreader.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/options_netcdf.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/options.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/multiostream.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/msg_stack.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/mask.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/lapack_routines.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/invert_parderiv.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/invert_laplace.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/interpolation_z.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/interpolation_xz.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/interpolation.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/initialprofiles.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/gyro_average.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/globals.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/fieldperp.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/field_factory.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/field_data.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/field3d.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/field2d.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/field.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/fft.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/difops.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/derivs.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/dcomplex.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/cyclic_reduction.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/boutexception.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/boutcomm.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout_types.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout/petsclib.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout/invertable_operator.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout/utils.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout/field.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout/sundials_backports.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout/boutcomm.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout/output.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout/where.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout/vector3d.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout/vector2d.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout/vecops.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout/unused.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout/traits.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout/template_combinations.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout/sys
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout/sys/variant.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout/sys/uncopyable.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout/sys/type_name.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout/sys/timer.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout/sys/range.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout/sys/gettext.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout/sys/generator_context.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout/sys/expressionparser.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout/surfaceiter.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout/stencils.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/mpich-x86_64/bout++/bout/sourcex.hxx
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-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/mpich/lib/cmake/bout++/FindSphinx.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/mpich/lib/cmake/bout++/ResolveCompilerPaths.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/python3.11/site-packages/mpich/boutconfig/__init__.py
++ grep /libbout
++ find /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64//usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64//usr/lib64/python3.11/site-packages/mpich
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep /libbout)
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64//usr/lib64/mpich/lib/libbout++.so
/builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64//usr/lib64/mpich/lib/libbout++.so: RUNPATH=:/usr/lib64/mpich/lib
/builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64//usr/lib64/mpich/lib/libbout++.so: new RUNPATH: /usr/lib64/mpich/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep /libbout)
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64//usr/lib64/mpich/lib/libbout++.so.5.0.0
/builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64//usr/lib64/mpich/lib/libbout++.so.5.0.0: RUNPATH=/usr/lib64/mpich/lib
/builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64//usr/lib64/mpich/lib/libbout++.so.5.0.0: new RUNPATH: /usr/lib64/mpich/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep /libbout)
+ chrpath -r /usr/lib64/mpich/lib /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64//usr/lib64/python3.11/site-packages/mpich/boutpp/libboutpp.cpython-311-x86_64-linux-gnu.so
/builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64//usr/lib64/python3.11/site-packages/mpich/boutpp/libboutpp.cpython-311-x86_64-linux-gnu.so: RUNPATH=:/usr/lib64/mpich/lib
/builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64//usr/lib64/python3.11/site-packages/mpich/boutpp/libboutpp.cpython-311-x86_64-linux-gnu.so: new RUNPATH: /usr/lib64/mpich/lib
+ rm -rf /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/bout++
+ mkdir -p /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/modulefiles/bout++
+ cat
+ DESTDIR=/builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64
+ /usr/bin/cmake --install build_mpich/manual
-- Install configuration: "RelWithDebInfo"
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++/
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//objects.inv
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//searchindex.js
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/css
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/css/custom.css
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/contents.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/navigation.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/sphinxdoc.css
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/basic.css
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/doctools.js
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/documentation_options.js
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/file.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/language_data.js
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/minus.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/plus.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/searchtools.js
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/sphinx_highlight.js
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/pygments.css
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_images
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_images/init_balloon.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_images/stagLocations.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_images/quickstart_conduction_example.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_images/sod_result.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_images/interchange_inst_test.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_images/snb-step.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_images/snb-sinusoidal.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_images/par_laplace.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_images/5PointStencilGlobalIndices.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_images/5PointStencilMatrix.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_images/5PointStencilMeshWithStencil.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_images/5PointStencilMesh.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_images/poincare.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_images/elliptic_grid.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_images/grid_gen.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_images/boutmesh-comms.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_images/topology_schematic.svg
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_images/topology_cross_section.svg
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_images/diffStencils.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_images/fluid_norm_mc.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_images/petsc_vector_set.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_images/operator_stencil_uml.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_images/petsc_interface_overview.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_images/memory.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_images/layout2.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_images/layout1.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//search.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//py-modindex.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//genindex.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/variable_init.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/time_integration.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/testing.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/staggered_grids.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/running_bout.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/quickstart.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/python_boutpp.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/python.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/preconditioning.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/physics_models.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/petsc.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/parallel-transforms.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/output_and_post.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/nonlocal.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/new_in_v5.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/makefiles.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/laplacian.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/invertable_operator.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/introduction.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/installing.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/input_grids.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/gpu_support.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/eigenvalue_solver.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/differential_operators.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/coordinates.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/bout_options.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/bout_functions_for_physics.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/boundary_options.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/algebraic_operators.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/advanced_install.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//user_docs/BOUT_Gradperp_op.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//index.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//developer_docs
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//developer_docs/petsc_interface.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//developer_docs/performance_profiling.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//developer_docs/natural_language.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//developer_docs/mesh.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//developer_docs/git_basics.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//developer_docs/file_io.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//developer_docs/data_types.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//developer_docs/contributing.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//developer_docs/code_layout.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//api_reference.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/variable_init.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/time_integration.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/testing.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/staggered_grids.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/running_bout.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/quickstart.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/python_boutpp.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/python.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/preconditioning.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/physics_models.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/petsc.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/parallel-transforms.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/output_and_post.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/nonlocal.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/new_in_v5.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/makefiles.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/laplacian.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/invertable_operator.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/introduction.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/installing.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/input_grids.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/gpu_support.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/eigenvalue_solver.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/differential_operators.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/coordinates.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/bout_options.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/bout_functions_for_physics.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/boundary_options.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/algebraic_operators.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/advanced_install.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/BOUT_Gradperp_op.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/index.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/developer_docs
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/developer_docs/petsc_interface.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/developer_docs/performance_profiling.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/developer_docs/natural_language.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/developer_docs/mesh.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/developer_docs/git_basics.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/developer_docs/file_io.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/developer_docs/data_types.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/developer_docs/contributing.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/developer_docs/code_layout.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/api_reference.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/_apidoc
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/_apidoc/zoidberg.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/_apidoc/boututils.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/_apidoc/boutpp.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/_apidoc/boutdata.rst.txt
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_apidoc
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_apidoc/zoidberg.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_apidoc/boututils.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_apidoc/boutpp.html
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_apidoc/boutdata.html
+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/mpich/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/mpich/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/mpich-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/mpich-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64
+ eval 'unset LD_LIBRARY_PATH;
unset MPI_COMPILER;
MANPATH=/usr/share/man:; export MANPATH;
unset MPI_INCLUDE;
unset MPI_MAN;
unset MPI_PYTHON_SITEARCH;
unset _LMFILES_;
unset LOADEDMODULES;
PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
unset MPI_PYTHON3_SITEARCH;
unset MPI_FORTRAN_MOD_DIR;
unset MPI_HOME;
unset __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH;
unset MPI_SYSCONFIG;
unset MPI_SUFFIX;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
unset MPI_PYTHON2_SITEARCH;
unset MPI_LIB;
PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
unset MPI_BIN;
test 0;'
++ unset LD_LIBRARY_PATH
++ unset MPI_COMPILER
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset MPI_MAN
++ unset MPI_PYTHON_SITEARCH
++ unset _LMFILES_
++ unset LOADEDMODULES
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_FORTRAN_MOD_DIR
++ unset MPI_HOME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SYSCONFIG
++ unset MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_PYTHON2_SITEARCH
++ unset MPI_LIB
++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ for mpi in mpich openmpi
+ '[' openmpi = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
LOADEDMODULES=; export LOADEDMODULES;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
LOADEDMODULES=; export LOADEDMODULES;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ LOADEDMODULES=
++++ export LOADEDMODULES
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/openmpi-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/openmpi-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64
+ eval 'MPI_COMPILER=openmpi-x86_64; export MPI_COMPILER;
LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH;
MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/openmpi-x86_64; export MPI_INCLUDE;
MPI_MAN=/usr/share/man/openmpi-x86_64; export MPI_MAN;
_LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64; export _LMFILES_;
LOADEDMODULES=mpi/openmpi-x86_64; export LOADEDMODULES;
PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/openmpi; export MPI_PYTHON3_SITEARCH;
MPI_HOME=/usr/lib64/openmpi; export MPI_HOME;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR;
__MODULES_LMALTNAME=mpi/openmpi-x86_64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME;
__MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SUFFIX=_openmpi; export MPI_SUFFIX;
MPI_SYSCONFIG=/etc/openmpi-x86_64; export MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB;
PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN;
test 0;'
++ MPI_COMPILER=openmpi-x86_64
++ export MPI_COMPILER
++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
++ export LD_LIBRARY_PATH
++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/openmpi-x86_64
++ export MPI_INCLUDE
++ MPI_MAN=/usr/share/man/openmpi-x86_64
++ export MPI_MAN
++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64
++ export _LMFILES_
++ LOADEDMODULES=mpi/openmpi-x86_64
++ export LOADEDMODULES
++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/openmpi
++ export MPI_PYTHON3_SITEARCH
++ MPI_HOME=/usr/lib64/openmpi
++ export MPI_HOME
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi
++ export MPI_FORTRAN_MOD_DIR
++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest'
++ export __MODULES_LMALTNAME
++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SUFFIX=_openmpi
++ export MPI_SUFFIX
++ MPI_SYSCONFIG=/etc/openmpi-x86_64
++ export MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_LIB=/usr/lib64/openmpi/lib
++ export MPI_LIB
++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/openmpi/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export OMPI_MCA_rmaps_base_oversubscribe=1
+ OMPI_MCA_rmaps_base_oversubscribe=1
+ DESTDIR=/builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64
+ /usr/bin/cmake --install build_openmpi
-- Install configuration: "RelWithDebInfo"
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/python3.11/site-packages/openmpi/boutpp/libboutpp.cpython-311-x86_64-linux-gnu.so
-- Set runtime path of "/builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/python3.11/site-packages/openmpi/boutpp/libboutpp.cpython-311-x86_64-linux-gnu.so" to ""
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/python3.11/site-packages/openmpi/boutpp/__init__.py
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/libpvode.so.1.0.0
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/libpvode.so
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/libpvpre.so.1.0.0
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/libpvpre.so
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/pvode
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/pvode/nvector.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/pvode/vector.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/pvode/spgmr.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/pvode/smalldense.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/pvode/pvbbdpre.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/pvode/llnltyps.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/pvode/llnlmath.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/pvode/iterativ.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/pvode/cvspgmr.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/pvode/cvode.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/pvode/cvdiag.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/pvode/band.h
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/cmake/PVODE/PVODETargets.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/cmake/PVODE/PVODETargets-relwithdebinfo.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/locale/es/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/locale/de/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/locale/fr/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/locale/zh_CN/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/locale/zh_TW/LC_MESSAGES/libbout.mo
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/libbout++.so.5.0.0
-- Set runtime path of "/builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/libbout++.so.5.0.0" to ""
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/libbout++.so
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/where.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/vector3d.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/vector2d.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/vecops.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/utils.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/unused.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/stencils.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/sourcex.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/smoothing.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/parallel_boundary_region.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/parallel_boundary_op.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/output.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/optionsreader.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/options_netcdf.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/options.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/multiostream.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/msg_stack.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/mask.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/lapack_routines.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/invert_parderiv.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/invert_laplace.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/interpolation_z.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/interpolation_xz.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/interpolation.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/initialprofiles.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/gyro_average.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/globals.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/fieldperp.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/field_factory.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/field_data.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/field3d.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/field2d.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/field.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/fft.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/difops.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/derivs.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/dcomplex.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/cyclic_reduction.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/boutexception.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/boutcomm.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout_types.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/petsclib.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/invertable_operator.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/utils.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/field.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/sundials_backports.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/boutcomm.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/output.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/where.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/vector3d.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/vector2d.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/vecops.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/unused.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/traits.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/template_combinations.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/sys
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/sys/variant.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/sys/uncopyable.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/sys/type_name.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/sys/timer.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/sys/range.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/sys/gettext.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/sys/generator_context.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/sys/expressionparser.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/surfaceiter.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/stencils.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/sourcex.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/solverfactory.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/solver.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/snb.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/smoothing.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/slepclib.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/single_index_ops.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/scorepwrapper.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/rvec.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/rkscheme.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/region.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/rajalib.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/physicsmodel.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/petsc_interface.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/paralleltransform.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/parallel_boundary_region.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/parallel_boundary_op.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/output_bout_types.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/optionsreader.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/options_netcdf.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/options.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/operatorstencil.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/openmpwrap.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/multiostream.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/msg_stack.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/mpi_wrapper.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/monitor.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/mesh.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/mask.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/macro_for_each.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/lapack_routines.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/invert_parderiv.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/invert_laplace.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/invert
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/invert/laplacexz.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/invert/laplacexy2_hypre.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/invert/laplacexy2.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/invert/laplacexy.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/interpolation_z.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/interpolation_xz.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/interpolation.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/initialprofiles.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/index_derivs_interface.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/index_derivs.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/hyprelib.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/hypre_interface.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/gyro_average.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/griddata.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/globals.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/globalindexer.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/globalfield.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/generic_factory.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/fv_ops.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/format.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/fieldperp.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/fieldgroup.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/field_factory.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/field_data.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/field_accessor.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/field3d.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/field2d.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/fft.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/expr.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/difops.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/derivs.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/deriv_store.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/dcomplex.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/cyclic_reduction.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/coordinates_accessor.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/coordinates.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/constants.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/caliper_wrapper.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/build_config.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/boutexception.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/bout_types.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/bout_enum_class.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/bout.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/boundary_standard.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/boundary_region.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/boundary_op.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/boundary_factory.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/assert.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/array.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/boundary_standard.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/boundary_region.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/boundary_op.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/boundary_factory.hxx
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/build_defines.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/revision.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/include/openmpi-x86_64/bout++/bout/version.hxx
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/bin
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/bin/bout_4to5
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/bin/bout_3to4.py
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/bin/bout-v5-xzinterpolation-upgrader.py
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/bin/bout-v5-physics-model-upgrader.py
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/bin/bout-v5-macro-upgrader.py
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/bin/bout-v5-input-file-upgrader.py
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/bin/bout-v5-header-upgrader.py
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/bin/bout-v5-format-upgrader.py
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/bin/bout-v5-factory-upgrader.py
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/bin/bout-stop-script
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/bin/bout-sonnet
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/bin/bout-log-color
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/bin/bout-changelog-generator.py
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/bin/bout-build-deps.sh
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/bin/bout-boutdata-restart-create
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/bin/bout-archive-helper.sh
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/bin/bout-add-mod-path
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/bin/bout-config
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/cmake/bout++/bout++Targets.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/cmake/bout++/bout++Targets-relwithdebinfo.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/cmake/bout++/bout++Config.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/cmake/bout++/bout++ConfigVersion.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/cmake/bout++/BOUT++functions.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/cmake/bout++/CorrectWindowsPaths.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/cmake/bout++/FindClangFormat.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/cmake/bout++/FindFFTW.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/cmake/bout++/FindHYPRE.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/cmake/bout++/FindnetCDF.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/cmake/bout++/FindnetCDFCxx.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/cmake/bout++/FindPackageMultipass.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/cmake/bout++/FindLibuuid.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/cmake/bout++/FindPETSc.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/cmake/bout++/FindScoreP.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/cmake/bout++/FindSLEPc.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/cmake/bout++/FindSUNDIALS.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/cmake/bout++/FindSphinx.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/cmake/bout++/ResolveCompilerPaths.cmake
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/python3.11/site-packages/openmpi/boutconfig/__init__.py
++ grep /libbout
++ find /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64//usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64//usr/lib64/python3.11/site-packages/openmpi
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep /libbout)
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64//usr/lib64/openmpi/lib/libbout++.so
/builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64//usr/lib64/openmpi/lib/libbout++.so: RUNPATH=:/usr/lib64/openmpi/lib
/builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64//usr/lib64/openmpi/lib/libbout++.so: new RUNPATH: /usr/lib64/openmpi/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep /libbout)
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64//usr/lib64/openmpi/lib/libbout++.so.5.0.0
/builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64//usr/lib64/openmpi/lib/libbout++.so.5.0.0: RUNPATH=/usr/lib64/openmpi/lib
/builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64//usr/lib64/openmpi/lib/libbout++.so.5.0.0: new RUNPATH: /usr/lib64/openmpi/lib
+ for f in $(find ${RPM_BUILD_ROOT}/${MPI_LIB} ${RPM_BUILD_ROOT}/${MPI_PYTHON3_SITEARCH} | grep /libbout)
+ chrpath -r /usr/lib64/openmpi/lib /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64//usr/lib64/python3.11/site-packages/openmpi/boutpp/libboutpp.cpython-311-x86_64-linux-gnu.so
/builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64//usr/lib64/python3.11/site-packages/openmpi/boutpp/libboutpp.cpython-311-x86_64-linux-gnu.so: RUNPATH=:/usr/lib64/openmpi/lib
/builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64//usr/lib64/python3.11/site-packages/openmpi/boutpp/libboutpp.cpython-311-x86_64-linux-gnu.so: new RUNPATH: /usr/lib64/openmpi/lib
+ rm -rf /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/bout++
+ mkdir -p /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/modulefiles/bout++
+ cat
+ DESTDIR=/builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64
+ /usr/bin/cmake --install build_openmpi/manual
-- Install configuration: "RelWithDebInfo"
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++/
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//objects.inv
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//searchindex.js
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/css
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/css/custom.css
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/contents.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/navigation.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/sphinxdoc.css
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/basic.css
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/doctools.js
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/documentation_options.js
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/file.png
-- Installing: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/language_data.js
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/minus.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/plus.png
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_static/searchtools.js
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-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/preconditioning.rst.txt
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-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/nonlocal.rst.txt
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-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/bout_functions_for_physics.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/boundary_options.rst.txt
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-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/user_docs/advanced_install.rst.txt
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-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/index.rst.txt
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/developer_docs
-- Up-to-date: /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++//_sources/developer_docs/petsc_interface.rst.txt
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+ '[' openmpi = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/openmpi/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/openmpi-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/openmpi-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64
+ eval 'unset MPI_COMPILER;
unset LD_LIBRARY_PATH;
MANPATH=/usr/share/man:; export MANPATH;
unset MPI_INCLUDE;
unset MPI_MAN;
unset _LMFILES_;
unset LOADEDMODULES;
PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
unset MPI_PYTHON3_SITEARCH;
unset MPI_HOME;
unset MPI_FORTRAN_MOD_DIR;
unset __MODULES_LMALTNAME;
unset __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH;
unset MPI_SUFFIX;
unset MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
unset MPI_LIB;
PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
unset MPI_BIN;
test 0;'
++ unset MPI_COMPILER
++ unset LD_LIBRARY_PATH
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset MPI_MAN
++ unset _LMFILES_
++ unset LOADEDMODULES
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_HOME
++ unset MPI_FORTRAN_MOD_DIR
++ unset __MODULES_LMALTNAME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SUFFIX
++ unset MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_LIB
++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ /usr/lib/rpm/find-lang.sh /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64 libbout
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 5.0.0-6.fc39 --unique-debug-suffix -5.0.0-6.fc39.x86_64 --unique-debug-src-base bout++-5.0.0-6.fc39.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea
extracting debug info from /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/mpich/lib/libbout++.so.5.0.0
extracting debug info from /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/mpich/lib/libpvode.so.1.0.0
/usr/bin/gdb.minimal
extracting debug info from /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/mpich/lib/libpvpre.so.1.0.0
/usr/bin/gdb.minimal
extracting debug info from /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/libbout++.so.5.0.0
/usr/bin/gdb.minimal
/usr/bin/gdb.minimal
extracting debug info from /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/libpvode.so.1.0.0
/usr/bin/gdb.minimal
extracting debug info from /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/openmpi/lib/libpvpre.so.1.0.0
/usr/bin/gdb.minimal
extracting debug info from /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/python3.11/site-packages/mpich/boutpp/libboutpp.cpython-311-x86_64-linux-gnu.so
/usr/bin/gdb.minimal
extracting debug info from /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/python3.11/site-packages/openmpi/boutpp/libboutpp.cpython-311-x86_64-linux-gnu.so
/usr/bin/gdb.minimal
original debug info size: 228748kB, size after compression: 177032kB
/usr/bin/sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match.
18815 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/lib64/openmpi/bin/bout-config from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/lib64/openmpi/bin/bout-add-mod-path from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-archive-helper.sh from /usr/bin/env bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/openmpi/bin/bout-boutdata-restart-create from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-build-deps.sh from /usr/bin/env bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/openmpi/bin/bout-changelog-generator.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-log-color from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/lib64/openmpi/bin/bout-sonnet from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-stop-script from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-factory-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-format-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-header-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-input-file-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-macro-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-physics-model-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout-v5-xzinterpolation-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout_3to4.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/openmpi/bin/bout_4to5 from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/mpich/bin/bout-config from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/lib64/mpich/bin/bout-add-mod-path from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-archive-helper.sh from /usr/bin/env bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/mpich/bin/bout-boutdata-restart-create from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-build-deps.sh from /usr/bin/env bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/mpich/bin/bout-changelog-generator.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-log-color from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/lib64/mpich/bin/bout-sonnet from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-stop-script from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/lib64/mpich/bin/bout-v5-factory-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-format-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-header-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-input-file-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-macro-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-physics-model-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout-v5-xzinterpolation-upgrader.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout_3to4.py from /usr/bin/env python3 to #!/usr/bin/python3
mangling shebang in /usr/lib64/mpich/bin/bout_4to5 from /bin/bash to #!/usr/bin/bash
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
Bytecompiling .py files below /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib/debug/usr/lib64/python3.11 using python3.11
Bytecompiling .py files below /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/lib64/python3.11 using python3.11
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.xZ3I64
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd BOUT++-v5.0.0.dev10626+gd935fa1ea
+ fail=0
+ for mpi in mpich openmpi
+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/mpich-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/mpich-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/mpich-x86_64
+ eval 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib; export LD_LIBRARY_PATH;
MPI_COMPILER=mpich-x86_64; export MPI_COMPILER;
MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/mpich-x86_64; export MPI_INCLUDE;
MPI_MAN=/usr/share/man/mpich-x86_64; export MPI_MAN;
MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON_SITEARCH;
_LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64; export _LMFILES_;
LOADEDMODULES=mpi/mpich-x86_64; export LOADEDMODULES;
PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/mpich; export MPI_PYTHON3_SITEARCH;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich; export MPI_FORTRAN_MOD_DIR;
MPI_HOME=/usr/lib64/mpich; export MPI_HOME;
__MODULES_LMCONFLICT=mpi/mpich-x86_64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SYSCONFIG=/etc/mpich-x86_64; export MPI_SYSCONFIG;
MPI_SUFFIX=_mpich; export MPI_SUFFIX;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich; export MPI_PYTHON2_SITEARCH;
MPI_LIB=/usr/lib64/mpich/lib; export MPI_LIB;
PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/mpich/bin; export MPI_BIN;
test 0;'
++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib
++ export LD_LIBRARY_PATH
++ MPI_COMPILER=mpich-x86_64
++ export MPI_COMPILER
++ MANPATH=/usr/share/man/mpich-x86_64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/mpich-x86_64
++ export MPI_INCLUDE
++ MPI_MAN=/usr/share/man/mpich-x86_64
++ export MPI_MAN
++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON_SITEARCH
++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-x86_64
++ export _LMFILES_
++ LOADEDMODULES=mpi/mpich-x86_64
++ export LOADEDMODULES
++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/mpich
++ export MPI_PYTHON3_SITEARCH
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich
++ export MPI_FORTRAN_MOD_DIR
++ MPI_HOME=/usr/lib64/mpich
++ export MPI_HOME
++ __MODULES_LMCONFLICT='mpi/mpich-x86_64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SYSCONFIG=/etc/mpich-x86_64
++ export MPI_SYSCONFIG
++ MPI_SUFFIX=_mpich
++ export MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich'
++ export MPI_PYTHON2_SITEARCH
++ MPI_LIB=/usr/lib64/mpich/lib
++ export MPI_LIB
++ PATH=/usr/lib64/mpich/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
~/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich ~/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea
++ export PATH
++ MPI_BIN=/usr/lib64/mpich/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
+ pushd build_mpich
+ export OMPI_MCA_rmaps_base_oversubscribe=yes
+ OMPI_MCA_rmaps_base_oversubscribe=yes
+ export HDF5_USE_FILE_LOCKING=FALSE
+ HDF5_USE_FILE_LOCKING=FALSE
+ export BOUT_TEST_TIMEOUT=15m
+ BOUT_TEST_TIMEOUT=15m
+ sed 's/ 3s / 30s /' tests/integrated/test-coordinates-initialization/runtest
#!/bin/bash
# Cores: 3
make || exit
test -z $MPIRUN  && MPIRUN='mpirun -np'
# Kill the test after 3 seconds, if it hasn't already exited
OMP_NUM_THREADS=1 $MPIRUN 3 timeout 30s ./test-coordinates-initialization
e=$?
if test $e -ne 0
then
    echo "The test failed. That can be caused by a timeout."
    echo "If this test is run on high load, it may fail occasionally."
    echo "The load is:"
    uptime
fi
exit $e
+ make -j2 build-check
/usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea -B/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich --check-build-system CMakeFiles/Makefile.cmake 0
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/usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 
[  2%] Linking CXX shared library ../../../../../lib/libgtest.so
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/externalpackages/googletest/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/gtest.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgtest.so.1.10.0 -o ../../../../../lib/libgtest.so.1.10.0 "CMakeFiles/gtest.dir/src/gtest-all.cc.o" 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplace/impls/spt/spt.cxx: In member function '__ct_base ':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplace/impls/spt/spt.cxx:68:37: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   68 |   alldata = new SPT_data[ye - ys + 1];
      |                                     ^
/usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here
  128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/externalpackages/googletest/googletest && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib/libgtest.so.1.10.0 ../../../../../lib/libgtest.so.1.10.0 ../../../../../lib/libgtest.so
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/externalpackages/googletest/googlemock && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/MMS/wave-1d-y && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-wave-1d-y.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/externalpackages/googletest/googlemock && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib/libgmock.so.1.10.0 ../../../../../lib/libgmock.so.1.10.0 ../../../../../lib/libgmock.so
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make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/MMS/advection && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/advection/CMakeFiles/MMS-advection.dir/advection.cxx.o -MF CMakeFiles/MMS-advection.dir/advection.cxx.o.d -o CMakeFiles/MMS-advection.dir/advection.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/MMS/advection/advection.cxx
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 44%] Built target MMS-wave-1d-y
make  -f tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build.make tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/MMS/diffusion /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/MMS/diffusion /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build.make tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 44%] Building CXX object tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/MMS/diffusion && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/MMS/diffusion -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o -MF CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o.d -o CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/MMS/diffusion/diffusion.cxx
[ 44%] Linking CXX executable advection
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/MMS/advection && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-advection.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/MMS-advection.dir/link.d "CMakeFiles/MMS-advection.dir/advection.cxx.o" -o advection  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
[ 44%] Linking CXX executable cyto
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/MMS/diffusion && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-diffusion.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/MMS-diffusion.dir/link.d "CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o" -o cyto  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 44%] Built target MMS-advection
make  -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 45%] Building CXX object tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/wave.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/MMS/wave-1d && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/MMS/wave-1d -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/wave.cxx.o -MF CMakeFiles/MMS-wave-1d.dir/wave.cxx.o.d -o CMakeFiles/MMS-wave-1d.dir/wave.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/MMS/wave-1d/wave.cxx
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 45%] Built target MMS-diffusion
make  -f tests/unit/CMakeFiles/serial_tests.dir/build.make tests/unit/CMakeFiles/serial_tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/CMakeFiles/serial_tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/unit/CMakeFiles/serial_tests.dir/build.make tests/unit/CMakeFiles/serial_tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 45%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/bout_test_main.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/bout_test_main.cxx.o -MF CMakeFiles/serial_tests.dir/bout_test_main.cxx.o.d -o CMakeFiles/serial_tests.dir/bout_test_main.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout_test_main.cxx
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout_test_main.cxx: In function 'int main(int, char**)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout_test_main.cxx:29:18: warning: unused variable 'hyprelib' [-Wunused-variable]
   29 |   bout::HypreLib hyprelib{};
      |                  ^~~~~~~~
[ 45%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_field.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_field.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_field.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/field/test_field.cxx
[ 45%] Linking CXX executable wave
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/MMS/wave-1d && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-wave-1d.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/MMS-wave-1d.dir/link.d "CMakeFiles/MMS-wave-1d.dir/wave.cxx.o" -o wave  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 45%] Built target MMS-wave-1d
make  -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-yupdown-weights /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-yupdown-weights /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 45%] Building CXX object tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-yupdown-weights && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-yupdown-weights -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o -MF CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o.d -o CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-yupdown-weights/test_yupdown_weights.cxx
[ 47%] Linking CXX executable test_yupdown_weights
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-yupdown-weights && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-yupdown-weights.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-yupdown-weights.dir/link.d "CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o" -o test_yupdown_weights  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 47%] Built target test-yupdown-weights
make  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 48%] Generating resolve_enum.pxd
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.11 generate.py resolve_enum.pxd.jinja /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/resolve_enum.pxd
[ 48%] Generating boutcpp.pxd
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.11 generate.py boutcpp.pxd.jinja /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/boutcpp.pxd
[ 48%] Generating boutpp.pyx
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.11 generate.py boutpp.pyx.jinja /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/boutpp.pyx
[ 50%] Generating helper.cxx
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.11 generate.py helper.cxx.jinja /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/helper.cxx
[ 50%] Generating helper.h
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/..: /usr/bin/python3.11 generate.py helper.h.jinja /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/helper.h
[ 50%] Cythonizing python interface
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy boutpp.pyx libboutpp.pyx
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build && /usr/bin/python3.11 -m cython libboutpp.pyx --cplus -3 -X binding=True -X embedsignature=True
warning: resolve_enum.pxd:49:21: 'deflt' redeclared 
warning: resolve_enum.pxd:189:24: 'Standard' redeclared 
warning: resolve_enum.pxd:223:15: 'Standard' redeclared 
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 50%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/helper.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_311_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build -I/usr/include/python3.11 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/helper.cxx.o -MF CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/helper.cxx.o.d -o CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/helper.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/helper.cxx
[ 51%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/field/test_field2d.cxx
[ 51%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/libboutpp.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_311_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build -I/usr/include/python3.11 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/libboutpp.cpp.o -MF CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/libboutpp.cpp.o.d -o CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/libboutpp.cpp.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp
In file included from /usr/include/numpy/ndarraytypes.h:1940,
                 from /usr/include/numpy/ndarrayobject.h:12,
                 from /usr/include/numpy/arrayobject.h:5,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:793:
/usr/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:30516:46: warning: '__pyx_obj_9libboutpp_Vector2D* __pyx_f_9libboutpp_v2dFromObj(Vector2D)' defined but not used [-Wunused-function]
30516 | static struct __pyx_obj_9libboutpp_Vector2D *__pyx_f_9libboutpp_v2dFromObj(Vector2D __pyx_v_i) {
      |                                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp: In function '__pyx_f_12resolve_enum_resolve_cell_loc(_object*)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56447:10: warning: '__pyx_r' may be used uninitialized [-Wmaybe-uninitialized]
56447 |   return __pyx_r;
      |          ^~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:56090:12: note: '__pyx_r' was declared here
56090 |   CELL_LOC __pyx_r;
      |            ^~~~~~~
[ 51%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/field/test_field3d.cxx
In function '__pyx_pf_9libboutpp_48bracket(_object*, __pyx_obj_9libboutpp_Field3D*, __pyx_obj_9libboutpp_Field3D*, _object*, _object*)',
    inlined from '__pyx_pw_9libboutpp_49bracket(_object*, _object*, _object*)' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:48665:42:
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:48741:65: warning: '__pyx_r' may be used uninitialized [-Wmaybe-uninitialized]
48741 |   __pyx_t_1 = ((PyObject *)__pyx_f_9libboutpp_f3dFromObj(bracket((__pyx_v_a->cobj[0]), (__pyx_v_b->cobj[0]), __pyx_v_method_, __pyx_v_outloc_))); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 2901, __pyx_L1_error)
      |                                                          ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp: In function '__pyx_pw_9libboutpp_49bracket(_object*, _object*, _object*)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpp:57958:18: note: '__pyx_r' was declared here
57958 |   BRACKET_METHOD __pyx_r;
      |                  ^~~~~~~
[ 51%] Linking CXX shared library libboutpp.cpython-311-x86_64-linux-gnu.so
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E cmake_link_script CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libboutpp.cpython-311-x86_64-linux-gnu.so -o libboutpp.cpython-311-x86_64-linux-gnu.so "CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/libboutpp.cpp.o" "CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/helper.cxx.o" "CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/boutexception_helper.cxx.o"  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib: ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
[ 51%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field_factory.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_field_factory.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_field_factory.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_field_factory.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/field/test_field_factory.cxx
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
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make  -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/depend
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-backtrace /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-backtrace /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 52%] Building CXX object tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/boutexcept.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-backtrace && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-backtrace -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/boutexcept.cxx.o -MF CMakeFiles/test-backtrace.dir/boutexcept.cxx.o.d -o CMakeFiles/test-backtrace.dir/boutexcept.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-backtrace/boutexcept.cxx
[ 52%] Linking CXX executable boutexcept
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-backtrace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-backtrace.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-backtrace.dir/link.d "CMakeFiles/test-backtrace.dir/boutexcept.cxx.o" -o boutexcept  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
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make  -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/depend
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[ 52%] Building CXX object tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/test_beuler.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-beuler && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-beuler -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/test_beuler.cxx.o -MF CMakeFiles/test_beuler.dir/test_beuler.cxx.o.d -o CMakeFiles/test_beuler.dir/test_beuler.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-beuler/test_beuler.cxx
[ 52%] Linking CXX executable test_beuler
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-beuler && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_beuler.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test_beuler.dir/link.d CMakeFiles/test_beuler.dir/test_beuler.cxx.o -o test_beuler  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
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make  -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/depend
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make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-bout-override-default-option && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-bout-override-default-option -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o -MF CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o.d -o CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-bout-override-default-option/test-bout-override-default-option.cxx
In file included from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-bout-override-default-option/test-bout-override-default-option.cxx:1:
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/options.hxx:3:2: warning: #warning Header "options.hxx" has moved to "bout/options.hxx". Run `bin/bout-v5-header-upgrader.py` to fix [-Wcpp]
    3 | #warning Header "options.hxx" has moved to "bout/options.hxx". Run `bin/bout-v5-header-upgrader.py` to fix
      |  ^~~~~~~
[ 52%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_fieldgroup.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_fieldgroup.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_fieldgroup.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_fieldgroup.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/field/test_fieldgroup.cxx
[ 52%] Linking CXX executable test-bout-override-default-option
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-bout-override-default-option && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-bout-override-default-option.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-bout-override-default-option.dir/link.d "CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o" -o test-bout-override-default-option  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 52%] Built target test-bout-override-default-option
make  -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-command-args /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-command-args /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 54%] Building CXX object tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/command-args.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-command-args && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-command-args -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/command-args.cxx.o -MF CMakeFiles/test-command-args.dir/command-args.cxx.o.d -o CMakeFiles/test-command-args.dir/command-args.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-command-args/command-args.cxx
[ 54%] Linking CXX executable command-args
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-command-args && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-command-args.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-command-args.dir/link.d "CMakeFiles/test-command-args.dir/command-args.cxx.o" -o command-args  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 54%] Built target test-command-args
make  -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-communications /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-communications /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-communications/CMakeFiles/test-communications.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 54%] Building CXX object tests/integrated/test-communications/CMakeFiles/test-communications.dir/test-communications.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-communications && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-communications -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-communications/CMakeFiles/test-communications.dir/test-communications.cxx.o -MF CMakeFiles/test-communications.dir/test-communications.cxx.o.d -o CMakeFiles/test-communications.dir/test-communications.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-communications/test-communications.cxx
[ 55%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_fieldperp.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_fieldperp.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_fieldperp.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_fieldperp.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/field/test_fieldperp.cxx
[ 55%] Linking CXX executable test-communications
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-communications && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-communications.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-communications.dir/link.d "CMakeFiles/test-communications.dir/test-communications.cxx.o" -o test-communications  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 55%] Built target test-communications
make  -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 55%] Building CXX object tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-coordinates-initialization && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-coordinates-initialization -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o -MF CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o.d -o CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-coordinates-initialization/test-coordinates-initialization.cxx
[ 57%] Linking CXX executable test-coordinates-initialization
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-coordinates-initialization && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-coordinates-initialization.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-coordinates-initialization.dir/link.d "CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o" -o test-coordinates-initialization  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
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make  -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-cyclic /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-cyclic /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 57%] Building CXX object tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-cyclic && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-cyclic -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o -MF CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o.d -o CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-cyclic/test_cyclic.cxx
[ 57%] Linking CXX executable test_cyclic
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-cyclic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-cyclic.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-cyclic.dir/link.d "CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o" -o test_cyclic  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
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make  -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-delp2 /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-delp2 /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/DependInfo.cmake "--color="
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[ 57%] Building CXX object tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/test_delp2.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-delp2 && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-delp2 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/test_delp2.cxx.o -MF CMakeFiles/test-delp2.dir/test_delp2.cxx.o.d -o CMakeFiles/test-delp2.dir/test_delp2.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-delp2/test_delp2.cxx
[ 57%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_initialprofiles.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_initialprofiles.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_initialprofiles.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_initialprofiles.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/field/test_initialprofiles.cxx
[ 57%] Linking CXX executable test_delp2
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-delp2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-delp2.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-delp2.dir/link.d "CMakeFiles/test-delp2.dir/test_delp2.cxx.o" -o test_delp2  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 57%] Built target test-delp2
make  -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/depend
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-datafilefacade /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-datafilefacade /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 57%] Building CXX object tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-datafilefacade && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-datafilefacade -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o -MF CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o.d -o CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-datafilefacade/test-datafile-facade.cxx
[ 58%] Linking CXX executable test-datafile-facade
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-datafilefacade && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-datafile-facade.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-datafile-facade.dir/link.d "CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o" -o test-datafile-facade  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 58%] Built target test-datafile-facade
make  -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-drift-instability /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-drift-instability /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 58%] Building CXX object tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/2fluid.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-drift-instability && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-drift-instability -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/2fluid.cxx.o -MF CMakeFiles/test-drift-instability.dir/2fluid.cxx.o.d -o CMakeFiles/test-drift-instability.dir/2fluid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-drift-instability/2fluid.cxx
[ 58%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_vector2d.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_vector2d.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_vector2d.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_vector2d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/field/test_vector2d.cxx
[ 58%] Linking CXX executable 2fluid
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-drift-instability && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-drift-instability.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-drift-instability.dir/link.d "CMakeFiles/test-drift-instability.dir/2fluid.cxx.o" -o 2fluid  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
[ 58%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_vector3d.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_vector3d.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_vector3d.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_vector3d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/field/test_vector3d.cxx
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 58%] Built target test-drift-instability
make  -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 58%] Building CXX object tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-drift-instability-staggered && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-drift-instability-staggered -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o -MF CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o.d -o CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-drift-instability-staggered/2fluid.cxx
[ 60%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_where.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_where.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_where.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_where.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/field/test_where.cxx
[ 61%] Linking CXX executable 2fluid
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-drift-instability-staggered && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-drift-instability-staggered.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-drift-instability-staggered.dir/link.d "CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o" -o 2fluid  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 61%] Built target test-drift-instability-staggered
make  -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 61%] Building CXX object tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-fieldgroupComm && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-fieldgroupComm -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o -MF CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o.d -o CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-fieldgroupComm/test_fieldgroupcomm.cxx
[ 61%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_array.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_array.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_array.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_array.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_array.cxx
[ 61%] Linking CXX executable test_fieldgroupcomm
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-fieldgroupComm && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-fieldgroupComm.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-fieldgroupComm.dir/link.d "CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o" -o test_fieldgroupcomm  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 61%] Built target test-fieldgroupComm
make  -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-griddata /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-griddata /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
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make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 61%] Building CXX object tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/test_griddata.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-griddata && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-griddata -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/test_griddata.cxx.o -MF CMakeFiles/test-griddata.dir/test_griddata.cxx.o.d -o CMakeFiles/test-griddata.dir/test_griddata.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-griddata/test_griddata.cxx
[ 61%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_assert.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_assert.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_assert.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_assert.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_assert.cxx
[ 61%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_bout_enum_class.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_bout_enum_class.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_bout_enum_class.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_bout_enum_class.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_bout_enum_class.cxx
[ 62%] Linking CXX executable test_griddata
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-griddata && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-griddata.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-griddata.dir/link.d "CMakeFiles/test-griddata.dir/test_griddata.cxx.o" -o test_griddata  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
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make  -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 62%] Building CXX object tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-griddata-yboundary-guards && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-griddata-yboundary-guards -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o -MF CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o.d -o CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-griddata-yboundary-guards/test_griddata.cxx
[ 62%] Linking CXX executable test_griddata
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-griddata-yboundary-guards && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-griddata-yboundary-guards.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-griddata-yboundary-guards.dir/link.d "CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o" -o test_griddata  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 62%] Built target test-griddata-yboundary-guards
make  -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-gyro /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-gyro /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 62%] Building CXX object tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/test_gyro.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-gyro && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-gyro -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/test_gyro.cxx.o -MF CMakeFiles/test-gyro.dir/test_gyro.cxx.o.d -o CMakeFiles/test-gyro.dir/test_gyro.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-gyro/test_gyro.cxx
[ 64%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_deriv_store.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_deriv_store.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_deriv_store.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_deriv_store.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_deriv_store.cxx
[ 65%] Linking CXX executable test_gyro
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-gyro && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-gyro.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-gyro.dir/link.d "CMakeFiles/test-gyro.dir/test_gyro.cxx.o" -o test_gyro  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 65%] Built target test-gyro
make  -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-initial /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-initial /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-initial/CMakeFiles/test-initial.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 65%] Building CXX object tests/integrated/test-initial/CMakeFiles/test-initial.dir/test_initial.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-initial && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-initial -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-initial/CMakeFiles/test-initial.dir/test_initial.cxx.o -MF CMakeFiles/test-initial.dir/test_initial.cxx.o.d -o CMakeFiles/test-initial.dir/test_initial.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-initial/test_initial.cxx
[ 65%] Linking CXX executable test_initial
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-initial && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-initial.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-initial.dir/link.d "CMakeFiles/test-initial.dir/test_initial.cxx.o" -o test_initial  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 65%] Built target test-initial
make  -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-interchange-instability /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-interchange-instability /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 65%] Building CXX object tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-interchange-instability && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-interchange-instability -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o -MF CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o.d -o CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-interchange-instability/2fluid.cxx
[ 65%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_generic_factory.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_generic_factory.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_generic_factory.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_generic_factory.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_generic_factory.cxx
[ 67%] Linking CXX executable 2fluid
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-interchange-instability && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interchange-instability.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-interchange-instability.dir/link.d "CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o" -o 2fluid  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
[ 67%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_macro_for_each.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_macro_for_each.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_macro_for_each.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_macro_for_each.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_macro_for_each.cxx
[ 67%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_monitor.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_monitor.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_monitor.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_monitor.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_monitor.cxx
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 67%] Built target test-interchange-instability
make  -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-interpolate /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-interpolate /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
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make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 67%] Building CXX object tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-interpolate && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-interpolate -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o -MF CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o.d -o CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-interpolate/test_interpolate.cxx
[ 68%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_petsc_indexer.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_petsc_indexer.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_petsc_indexer.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_petsc_indexer.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_petsc_indexer.cxx
[ 68%] Linking CXX executable test_interpolate
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-interpolate && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interpolate.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-interpolate.dir/link.d "CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o" -o test_interpolate  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 68%] Built target test-interpolate
make  -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-interpolate-z /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-interpolate-z /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 68%] Building CXX object tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-interpolate-z && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-interpolate-z -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o -MF CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o.d -o CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-interpolate-z/test_interpolate.cxx
[ 68%] Linking CXX executable test_interpolate
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-interpolate-z && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interpolate-z.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-interpolate-z.dir/link.d "CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o" -o test_interpolate  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 68%] Built target test-interpolate-z
make  -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-invertable-operator /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-invertable-operator /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 70%] Building CXX object tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-invertable-operator && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-invertable-operator -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o -MF CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o.d -o CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-invertable-operator/invertable_operator.cxx
In file included from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-invertable-operator/invertable_operator.cxx:4:
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx: In instantiation of 'PetscErrorCode bout::inversion::InvertableOperator<T>::setup() [with T = Field3D; PetscErrorCode = int]':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-invertable-operator/invertable_operator.cxx:51:19:   required from here
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:222:30: warning: 'virtual bool Mesh::firstY() const' is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  222 |         if (localmesh->firstY() or localmesh->lastY()) {
      |             ~~~~~~~~~~~~~~~~~^~
In file included from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:44:
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:441:66: note: declared here
  441 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:222:30: warning: 'virtual bool Mesh::firstY() const' is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  222 |         if (localmesh->firstY() or localmesh->lastY()) {
      |             ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:441:66: note: declared here
  441 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:222:52: warning: 'virtual bool Mesh::lastY() const' is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  222 |         if (localmesh->firstY() or localmesh->lastY()) {
      |                                    ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:445:65: note: declared here
  445 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:222:52: warning: 'virtual bool Mesh::lastY() const' is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  222 |         if (localmesh->firstY() or localmesh->lastY()) {
      |                                    ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:445:65: note: declared here
  445 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:225:36: warning: 'virtual bool Mesh::firstY() const' is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  225 |               if (localmesh->firstY()) {
      |                   ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:441:66: note: declared here
  441 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:225:36: warning: 'virtual bool Mesh::firstY() const' is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  225 |               if (localmesh->firstY()) {
      |                   ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:441:66: note: declared here
  441 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:231:35: warning: 'virtual bool Mesh::lastY() const' is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  231 |               if (localmesh->lastY()) {
      |                   ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:445:65: note: declared here
  445 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:231:35: warning: 'virtual bool Mesh::lastY() const' is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  231 |               if (localmesh->lastY()) {
      |                   ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:445:65: note: declared here
  445 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:262:30: warning: 'virtual bool Mesh::firstY() const' is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  262 |         if (localmesh->firstY() or localmesh->lastY()) {
      |             ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:441:66: note: declared here
  441 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:262:30: warning: 'virtual bool Mesh::firstY() const' is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  262 |         if (localmesh->firstY() or localmesh->lastY()) {
      |             ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:441:66: note: declared here
  441 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:262:52: warning: 'virtual bool Mesh::lastY() const' is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  262 |         if (localmesh->firstY() or localmesh->lastY()) {
      |                                    ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:445:65: note: declared here
  445 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:262:52: warning: 'virtual bool Mesh::lastY() const' is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  262 |         if (localmesh->firstY() or localmesh->lastY()) {
      |                                    ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:445:65: note: declared here
  445 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:265:36: warning: 'virtual bool Mesh::firstY() const' is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  265 |               if (localmesh->firstY()) {
      |                   ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:441:66: note: declared here
  441 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:265:36: warning: 'virtual bool Mesh::firstY() const' is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  265 |               if (localmesh->firstY()) {
      |                   ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:441:66: note: declared here
  441 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:270:35: warning: 'virtual bool Mesh::lastY() const' is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  270 |               if (localmesh->lastY()) {
      |                   ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:445:65: note: declared here
  445 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:270:35: warning: 'virtual bool Mesh::lastY() const' is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  270 |               if (localmesh->lastY()) {
      |                   ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:445:65: note: declared here
  445 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
[ 70%] Linking CXX executable invertable_operator
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-invertable-operator && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-invertable-operator.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-invertable-operator.dir/link.d "CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o" -o invertable_operator  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 70%] Built target test-invertable-operator
make  -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-invpar /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-invpar /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 70%] Building CXX object tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/test_invpar.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-invpar && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-invpar -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/test_invpar.cxx.o -MF CMakeFiles/test-invpar.dir/test_invpar.cxx.o.d -o CMakeFiles/test-invpar.dir/test_invpar.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-invpar/test_invpar.cxx
[ 70%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_petsc_matrix.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_petsc_matrix.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_petsc_matrix.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_petsc_matrix.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_petsc_matrix.cxx
[ 70%] Linking CXX executable test_invpar
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-invpar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-invpar.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-invpar.dir/link.d "CMakeFiles/test-invpar.dir/test_invpar.cxx.o" -o test_invpar  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 70%] Built target test-invpar
make  -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplace /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-laplace /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 71%] Building CXX object tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/test_laplace.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-laplace && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplace -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/test_laplace.cxx.o -MF CMakeFiles/test-laplace.dir/test_laplace.cxx.o.d -o CMakeFiles/test-laplace.dir/test_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplace/test_laplace.cxx
[ 71%] Linking CXX executable test_laplace
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplace.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-laplace.dir/link.d "CMakeFiles/test-laplace.dir/test_laplace.cxx.o" -o test_laplace  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 71%] Built target test-laplace
make  -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 71%] Building CXX object tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-laplace-petsc3d && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplace-petsc3d -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o -MF CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o.d -o CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplace-petsc3d/test-laplace3d.cxx
[ 71%] Linking CXX executable test-laplace3d
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-laplace-petsc3d && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplace-petsc3d.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-laplace-petsc3d.dir/link.d "CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o" -o test-laplace3d  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 71%] Built target test-laplace-petsc3d
make  -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 72%] Building CXX object tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-laplacexy-fv && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplacexy-fv -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o -MF CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o.d -o CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplacexy-fv/test-laplacexy.cxx
[ 72%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_petsc_setters.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_petsc_setters.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_petsc_setters.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_petsc_setters.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_petsc_setters.cxx
[ 72%] Linking CXX executable test-laplacexy
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-laplacexy-fv && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexy-fv.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-laplacexy-fv.dir/link.d "CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o" -o test-laplacexy  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 72%] Built target test-laplacexy-fv
make  -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplacexy-short /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-laplacexy-short /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 72%] Building CXX object tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-laplacexy-short && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplacexy-short -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o -MF CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o.d -o CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplacexy-short/test-laplacexy.cxx
[ 72%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_petsc_vector.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_petsc_vector.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_petsc_vector.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_petsc_vector.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_petsc_vector.cxx
[ 72%] Linking CXX executable test-laplacexy
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-laplacexy-short && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexy-short.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-laplacexy-short.dir/link.d "CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o" -o test-laplacexy  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 72%] Built target test-laplacexy-short
make  -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplacexz /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-laplacexz /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 74%] Building CXX object tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-laplacexz && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplacexz -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o -MF CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o.d -o CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplacexz/test-laplacexz.cxx
[ 74%] Linking CXX executable test-laplacexz
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-laplacexz && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexz.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-laplacexz.dir/link.d "CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o" -o test-laplacexz  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 74%] Built target test-laplacexz
make  -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 74%] Building CXX object tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-multigrid_laplace && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-multigrid_laplace -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o -MF CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o.d -o CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-multigrid_laplace/test_multigrid_laplace.cxx
[ 74%] Linking CXX executable test_multigrid_laplace
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-multigrid_laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-multigrid-laplace.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-multigrid-laplace.dir/link.d "CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o" -o test_multigrid_laplace  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
[ 74%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_region.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_region.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_region.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_region.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_region.cxx
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 74%] Built target test-multigrid-laplace
make  -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-naulin-laplace /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-naulin-laplace /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 75%] Building CXX object tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-naulin-laplace && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-naulin-laplace -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o -MF CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o.d -o CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-naulin-laplace/test_naulin_laplace.cxx
[ 75%] Linking CXX executable test_naulin_laplace
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-naulin-laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-naulin-laplace.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-naulin-laplace.dir/link.d "CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o" -o test_naulin_laplace  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 75%] Built target test-naulin-laplace
make  -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-options-netcdf /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-options-netcdf /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 75%] Building CXX object tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-options-netcdf && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-options-netcdf -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o -MF CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o.d -o CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-options-netcdf/test-options-netcdf.cxx
[ 75%] Linking CXX executable test-options-netcdf
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-options-netcdf && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-options-netcdf.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-options-netcdf.dir/link.d "CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o" -o test-options-netcdf  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 75%] Built target test-options-netcdf
make  -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-petsc_laplace /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-petsc_laplace /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 77%] Building CXX object tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-petsc_laplace && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-petsc_laplace -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o -MF CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o.d -o CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-petsc_laplace/test_petsc_laplace.cxx
[ 77%] Linking CXX executable test_petsc_laplace
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-petsc_laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-petsc-laplace.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-petsc-laplace.dir/link.d "CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o" -o test_petsc_laplace  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 77%] Built target test-petsc-laplace
make  -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 77%] Building CXX object tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-petsc_laplace_MAST-grid && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-petsc_laplace_MAST-grid -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o -MF CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o.d -o CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-petsc_laplace_MAST-grid/test_petsc_laplace_MAST_grid.cxx
[ 77%] Linking CXX executable test_petsc_laplace_MAST_grid
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-petsc_laplace_MAST-grid && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-petsc-laplace-MAST-grid.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-petsc-laplace-MAST-grid.dir/link.d "CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o" -o test_petsc_laplace_MAST_grid  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
[ 78%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_single_index_ops.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_single_index_ops.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_single_index_ops.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_single_index_ops.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_single_index_ops.cxx
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 78%] Built target test-petsc-laplace-MAST-grid
make  -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-restart-io /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-restart-io /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 80%] Building CXX object tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-restart-io && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-restart-io -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o -MF CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o.d -o CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-restart-io/test-restart-io.cxx
[ 80%] Linking CXX executable test-restart-io
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-restart-io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-restart-io.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-restart-io.dir/link.d "CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o" -o test-restart-io  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 80%] Built target test-restart-io
make  -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-restarting /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-restarting /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 80%] Building CXX object tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/test_restarting.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-restarting && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-restarting -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/test_restarting.cxx.o -MF CMakeFiles/test-restarting.dir/test_restarting.cxx.o.d -o CMakeFiles/test-restarting.dir/test_restarting.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-restarting/test_restarting.cxx
[ 80%] Linking CXX executable test_restarting
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-restarting && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-restarting.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-restarting.dir/link.d "CMakeFiles/test-restarting.dir/test_restarting.cxx.o" -o test_restarting  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 80%] Built target test-restarting
make  -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-smooth /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-smooth /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 80%] Building CXX object tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/test_smooth.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-smooth && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-smooth -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/test_smooth.cxx.o -MF CMakeFiles/test-smooth.dir/test_smooth.cxx.o.d -o CMakeFiles/test-smooth.dir/test_smooth.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-smooth/test_smooth.cxx
[ 80%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_stencil.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_stencil.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_stencil.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_stencil.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_stencil.cxx
[ 81%] Linking CXX executable test_smooth
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-smooth && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-smooth.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-smooth.dir/link.d "CMakeFiles/test-smooth.dir/test_smooth.cxx.o" -o test_smooth  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-snb /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-snb /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-snb/CMakeFiles/test-snb.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-snb && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-snb -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-snb/CMakeFiles/test-snb.dir/test_snb.cxx.o -MF CMakeFiles/test-snb.dir/test_snb.cxx.o.d -o CMakeFiles/test-snb.dir/test_snb.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-snb/test_snb.cxx
[ 81%] Linking CXX executable test_snb
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-snb && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-snb.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-snb.dir/link.d "CMakeFiles/test-snb.dir/test_snb.cxx.o" -o test_snb  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
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make  -f tests/integrated/test-solver/CMakeFiles/test-solver.dir/build.make tests/integrated/test-solver/CMakeFiles/test-solver.dir/depend
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-solver /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-solver /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-solver/CMakeFiles/test-solver.dir/DependInfo.cmake "--color="
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[ 81%] Building CXX object tests/integrated/test-solver/CMakeFiles/test-solver.dir/test_solver.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-solver && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-solver -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-solver/CMakeFiles/test-solver.dir/test_solver.cxx.o -MF CMakeFiles/test-solver.dir/test_solver.cxx.o.d -o CMakeFiles/test-solver.dir/test_solver.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-solver/test_solver.cxx
[ 81%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_template_combinations.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_template_combinations.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_template_combinations.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_template_combinations.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_template_combinations.cxx
[ 82%] Linking CXX executable test_solver
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-solver && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-solver.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-solver.dir/link.d "CMakeFiles/test-solver.dir/test_solver.cxx.o" -o test_solver  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
[ 82%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_traits.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_traits.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_traits.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_traits.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_traits.cxx
[ 84%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/test_cyclic_reduction.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/test_cyclic_reduction.cxx.o -MF CMakeFiles/serial_tests.dir/include/test_cyclic_reduction.cxx.o.d -o CMakeFiles/serial_tests.dir/include/test_cyclic_reduction.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/test_cyclic_reduction.cxx
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 84%] Built target test-solver
make  -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-squash /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-squash /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-squash/CMakeFiles/test-squash.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-squash && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-squash -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-squash/CMakeFiles/test-squash.dir/squash.cxx.o -MF CMakeFiles/test-squash.dir/squash.cxx.o.d -o CMakeFiles/test-squash.dir/squash.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-squash/squash.cxx
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-squash && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-squash.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-squash.dir/link.d "CMakeFiles/test-squash.dir/squash.cxx.o" -o squash  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-stopCheck && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-stopCheck -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o -MF CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o.d -o CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-stopCheck/test_stopCheck.cxx
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-stopCheck && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-stopCheck.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-stopCheck.dir/link.d "CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o" -o test_stopCheck  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-stopCheck-file /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-stopCheck-file /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-stopCheck-file && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-stopCheck-file -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o -MF CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o.d -o CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-stopCheck-file/test_stopCheck.cxx
[ 85%] Linking CXX executable test_stopCheck
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-stopCheck-file && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-stopCheck-file.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-stopCheck-file.dir/link.d "CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o" -o test_stopCheck  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
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make  -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/depend
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-twistshift /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-twistshift /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-twistshift && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-twistshift -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o -MF CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o.d -o CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-twistshift/test-twistshift.cxx
[ 85%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/test_mask.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/test_mask.cxx.o -MF CMakeFiles/serial_tests.dir/include/test_mask.cxx.o.d -o CMakeFiles/serial_tests.dir/include/test_mask.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/test_mask.cxx
[ 87%] Linking CXX executable test-twistshift
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-twistshift && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-twistshift.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-twistshift.dir/link.d "CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o" -o test-twistshift  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 87%] Built target test-twistshift
make  -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
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make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 87%] Building CXX object tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-twistshift-staggered && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-twistshift-staggered -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o -MF CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o.d -o CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-twistshift-staggered/test-twistshift.cxx
[ 87%] Linking CXX executable test-twistshift
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-twistshift-staggered && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-twistshift-staggered.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-twistshift-staggered.dir/link.d "CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o" -o test-twistshift  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
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make  -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-vec /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-vec /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-vec/CMakeFiles/test-vec.dir/DependInfo.cmake "--color="
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make  -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 87%] Building CXX object tests/integrated/test-vec/CMakeFiles/test-vec.dir/testVec.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-vec && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-vec -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-vec/CMakeFiles/test-vec.dir/testVec.cxx.o -MF CMakeFiles/test-vec.dir/testVec.cxx.o.d -o CMakeFiles/test-vec.dir/testVec.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-vec/testVec.cxx
[ 88%] Linking CXX executable testVec
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-vec && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-vec.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-vec.dir/link.d "CMakeFiles/test-vec.dir/testVec.cxx.o" -o testVec  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 88%] Built target test-vec
make  -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-yupdown /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-yupdown /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 88%] Building CXX object tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-yupdown && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-yupdown -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o -MF CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o.d -o CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-yupdown/test_yupdown.cxx
[ 88%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/invert/test_fft.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/invert/test_fft.cxx.o -MF CMakeFiles/serial_tests.dir/invert/test_fft.cxx.o.d -o CMakeFiles/serial_tests.dir/invert/test_fft.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/invert/test_fft.cxx
[ 88%] Linking CXX executable test_yupdown
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/integrated/test-yupdown && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-yupdown.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-yupdown.dir/link.d "CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o" -o test_yupdown  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/CMakeFiles/build-check-mms-tests.dir/DependInfo.cmake "--color="
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make  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color="
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[ 88%] Building python interface
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/libboutpp.cpython-311-x86_64-linux-gnu.so /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-311-x86_64-linux-gnu.so
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tools/pylib/_boutpp_build/../boutpp/__init__.py
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[ 90%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_petsc3damg.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_petsc3damg.cxx.o -MF CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_petsc3damg.cxx.o.d -o CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_petsc3damg.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/invert/laplace/test_laplace_petsc3damg.cxx
[ 90%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_cyclic.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_cyclic.cxx.o -MF CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_cyclic.cxx.o.d -o CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_cyclic.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/invert/laplace/test_laplace_cyclic.cxx
[ 90%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/mesh/data/test_gridfromoptions.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/mesh/data/test_gridfromoptions.cxx.o -MF CMakeFiles/serial_tests.dir/mesh/data/test_gridfromoptions.cxx.o.d -o CMakeFiles/serial_tests.dir/mesh/data/test_gridfromoptions.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/mesh/data/test_gridfromoptions.cxx
[ 90%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/mesh/parallel/test_shiftedmetric.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/mesh/parallel/test_shiftedmetric.cxx.o -MF CMakeFiles/serial_tests.dir/mesh/parallel/test_shiftedmetric.cxx.o.d -o CMakeFiles/serial_tests.dir/mesh/parallel/test_shiftedmetric.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/mesh/parallel/test_shiftedmetric.cxx
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/lib64/mpich/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/mpich-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/mesh/test_paralleltransform.cxx.o -MF CMakeFiles/serial_tests.dir/mesh/test_paralleltransform.cxx.o.d -o CMakeFiles/serial_tests.dir/mesh/test_paralleltransform.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/mesh/test_paralleltransform.cxx
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/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/sys/test_raja.cxx:96:7: warning: multi-line comment [-Wcomment]
   96 | #if 0 // disable temporarily until reconcile iteration space for parallel_forall  under \
      |       ^
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CMakeFiles/bout++.dir/src/sys/options.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o CMakeFiles/bout++.dir/src/sys/output.cxx.o CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o CMakeFiles/bout++.dir/src/sys/range.cxx.o CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o CMakeFiles/bout++.dir/src/sys/timer.cxx.o CMakeFiles/bout++.dir/src/sys/type_name.cxx.o CMakeFiles/bout++.dir/src/sys/utils.cxx.o "CMakeFiles/bout++.dir/bout++-time.cxx.o"  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib: /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/libfmt.so.10.0.0 lib/libpvode.so.1.0.0 lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl -ldl /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libnetcdf.so /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplace/impls/spt/spt.cxx: In member function '__ct_base ':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplace/impls/spt/spt.cxx:68:37: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   68 |   alldata = new SPT_data[ye - ys + 1];
      |                                     ^
/usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here
  128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
/usr/bin/cmake -E cmake_symlink_library lib/libbout++.so.5.0.0 lib/libbout++.so.5.0.0 lib/libbout++.so
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make  -f tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build.make tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/depend
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/MMS/wave-1d-y && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-wave-1d-y.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/MMS-wave-1d-y.dir/link.d "CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o" -o wave  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/MMS/advection && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-advection.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/MMS-advection.dir/link.d "CMakeFiles/MMS-advection.dir/advection.cxx.o" -o advection  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
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/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/MMS-diffusion.dir/link.d "CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o" -o cyto  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
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make  -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 42%] Linking CXX executable wave
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/MMS/wave-1d && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-wave-1d.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/MMS-wave-1d.dir/link.d "CMakeFiles/MMS-wave-1d.dir/wave.cxx.o" -o wave  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 44%] Built target MMS-wave-1d
make  -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/CMakeFiles/build-check-mms-tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make[3]: Nothing to be done for 'CMakeFiles/build-check-mms-tests.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
[ 44%] Built target build-check-mms-tests
make  -f CMakeFiles/check-mms-tests.dir/build.make CMakeFiles/check-mms-tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/CMakeFiles/check-mms-tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f CMakeFiles/check-mms-tests.dir/build.make CMakeFiles/check-mms-tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
ctest -R MMS- --output-on-failure
Test project /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich
    Start 52: MMS-diffusion
1/7 Test #52: MMS-diffusion ....................   Passed   58.19 sec
    Start 53: MMS-wave-1d
2/7 Test #53: MMS-wave-1d ......................   Passed   57.87 sec
    Start 54: MMS-wave-1d-y
3/7 Test #54: MMS-wave-1d-y ....................   Passed   57.26 sec
    Start 55: MMS-bracket
4/7 Test #55: MMS-bracket ......................   Passed    0.63 sec
    Start 56: MMS-derivatives3
5/7 Test #56: MMS-derivatives3 .................   Passed    1.08 sec
    Start 57: MMS-shiftedmetricinterp
6/7 Test #57: MMS-shiftedmetricinterp ..........   Passed    4.03 sec
    Start 58: MMS-upwinding3
7/7 Test #58: MMS-upwinding3 ...................   Passed    1.45 sec
100% tests passed, 0 tests failed out of 7
Total Test time (real) = 180.52 sec
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
Built target check-mms-tests
make  -f tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build.make tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/externalpackages/googletest/googletest /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build.make tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
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make  -f tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build.make tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/externalpackages/googletest/googlemock /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build.make tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
Linking CXX shared library ../../../../../lib/libgmock.so
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/externalpackages/googletest/googlemock && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/gmock.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgmock.so.1.10.0 -o ../../../../../lib/libgmock.so.1.10.0 "CMakeFiles/gmock.dir/src/gmock-all.cc.o"  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../../../../lib/libgtest.so.1.10.0 
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/externalpackages/googletest/googlemock && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib/libgmock.so.1.10.0 ../../../../../lib/libgmock.so.1.10.0 ../../../../../lib/libgmock.so
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
Built target gmock
make  -f tests/unit/CMakeFiles/serial_tests.dir/build.make tests/unit/CMakeFiles/serial_tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit/CMakeFiles/serial_tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f tests/unit/CMakeFiles/serial_tests.dir/build.make tests/unit/CMakeFiles/serial_tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
Linking CXX executable serial_tests
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/tests/unit && /usr/bin/cmake -E cmake_link_script CMakeFiles/serial_tests.dir/link.txt --verbose=1
/usr/lib64/mpich/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/serial_tests.dir/link.d CMakeFiles/serial_tests.dir/bout_test_main.cxx.o CMakeFiles/serial_tests.dir/field/test_field.cxx.o CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o CMakeFiles/serial_tests.dir/field/test_field_factory.cxx.o CMakeFiles/serial_tests.dir/field/test_fieldgroup.cxx.o CMakeFiles/serial_tests.dir/field/test_fieldperp.cxx.o CMakeFiles/serial_tests.dir/field/test_initialprofiles.cxx.o CMakeFiles/serial_tests.dir/field/test_vector2d.cxx.o CMakeFiles/serial_tests.dir/field/test_vector3d.cxx.o CMakeFiles/serial_tests.dir/field/test_where.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_array.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_assert.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_bout_enum_class.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_deriv_store.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_generic_factory.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_macro_for_each.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_monitor.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_indexer.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_matrix.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_setters.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_vector.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_region.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_single_index_ops.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_stencil.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_template_combinations.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_traits.cxx.o CMakeFiles/serial_tests.dir/include/test_cyclic_reduction.cxx.o CMakeFiles/serial_tests.dir/include/test_derivs.cxx.o CMakeFiles/serial_tests.dir/include/test_mask.cxx.o CMakeFiles/serial_tests.dir/invert/test_fft.cxx.o CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_petsc3damg.cxx.o CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_cyclic.cxx.o CMakeFiles/serial_tests.dir/mesh/data/test_gridfromoptions.cxx.o CMakeFiles/serial_tests.dir/mesh/parallel/test_shiftedmetric.cxx.o CMakeFiles/serial_tests.dir/mesh/test_boundary_factory.cxx.o CMakeFiles/serial_tests.dir/mesh/test_boutmesh.cxx.o CMakeFiles/serial_tests.dir/mesh/test_coordinates.cxx.o CMakeFiles/serial_tests.dir/mesh/test_coordinates_accessor.cxx.o CMakeFiles/serial_tests.dir/mesh/test_interpolation.cxx.o CMakeFiles/serial_tests.dir/mesh/test_mesh.cxx.o CMakeFiles/serial_tests.dir/mesh/test_paralleltransform.cxx.o CMakeFiles/serial_tests.dir/solver/test_fakesolver.cxx.o CMakeFiles/serial_tests.dir/solver/test_solver.cxx.o CMakeFiles/serial_tests.dir/solver/test_solverfactory.cxx.o CMakeFiles/serial_tests.dir/sys/test_boutexception.cxx.o CMakeFiles/serial_tests.dir/sys/test_expressionparser.cxx.o CMakeFiles/serial_tests.dir/sys/test_msg_stack.cxx.o CMakeFiles/serial_tests.dir/sys/test_options.cxx.o CMakeFiles/serial_tests.dir/sys/test_options_fields.cxx.o CMakeFiles/serial_tests.dir/sys/test_options_netcdf.cxx.o CMakeFiles/serial_tests.dir/sys/test_optionsreader.cxx.o CMakeFiles/serial_tests.dir/sys/test_output.cxx.o CMakeFiles/serial_tests.dir/sys/test_range.cxx.o CMakeFiles/serial_tests.dir/sys/test_timer.cxx.o CMakeFiles/serial_tests.dir/sys/test_type_name.cxx.o CMakeFiles/serial_tests.dir/sys/test_utils.cxx.o CMakeFiles/serial_tests.dir/sys/test_variant.cxx.o CMakeFiles/serial_tests.dir/sys/test_raja.cxx.o CMakeFiles/serial_tests.dir/test_extras.cxx.o CMakeFiles/serial_tests.dir/src/test_bout++.cxx.o -o serial_tests  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/lib ../../lib/libgmock.so.1.10.0 ../../lib/libbout++.so.5.0.0 ../../lib/libgtest.so.1.10.0 /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libpetsc.so /usr/lib64/mpich/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../lib/libpvode.so.1.0.0 ../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/mpich/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/mpich/lib/libsundials_cvode.so.6.5.1 /usr/lib64/mpich/lib/libsundials_ida.so.6.5.1 /usr/lib64/mpich/lib/libsundials_arkode.so.5.5.1 -ldl 
/usr/bin/ld: /tmp/ccWKv7Kh.ltrans106.ltrans.o: in function `testing::internal::TestFactoryImpl<OptionsNetCDFTest_WriteMultipleTimeDimensions_Test>::CreateTest()':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/sys/test_options_netcdf.cxx:28: warning: the use of `tmpnam' is dangerous, better use `mkstemp'
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
Built target serial_tests
make  -f CMakeFiles/build-check-unit-tests.dir/build.make CMakeFiles/build-check-unit-tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/CMakeFiles/build-check-unit-tests.dir/DependInfo.cmake "--color="
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make  -f CMakeFiles/build-check-unit-tests.dir/build.make CMakeFiles/build-check-unit-tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
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make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
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make  -f CMakeFiles/check-unit-tests.dir/build.make CMakeFiles/check-unit-tests.dir/depend
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich/CMakeFiles/check-unit-tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make  -f CMakeFiles/check-unit-tests.dir/build.make CMakeFiles/check-unit-tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
ctest -R serial_tests --output-on-failure
Test project /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich
    Start 1: serial_tests
1/1 Test #1: serial_tests .....................***Failed    3.70 sec
Running main() from bout_test_main.cxx
[WARNING] /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/src/gtest-death-test.cc:1121:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test detected 3 threads. See https://github.com/google/googletest/blob/master/googletest/docs/advanced.md#death-tests-and-threads for more explanation and suggested solutions, especially if this is the last message you see before your test times out.
[WARNING] /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/src/gtest-death-test.cc:1121:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test detected 3 threads. See https://github.com/google/googletest/blob/master/googletest/docs/advanced.md#death-tests-and-threads for more explanation and suggested solutions, especially if this is the last message you see before your test times out.
[WARNING] /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/src/gtest-death-test.cc:1121:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test detected 3 threads. See https://github.com/google/googletest/blob/master/googletest/docs/advanced.md#death-tests-and-threads for more explanation and suggested solutions, especially if this is the last message you see before your test times out.
Timer::resetTime
Timer name         | Total time (s) | % of top | Hits | Mean time/hit (s)
-------------------|----------------|----------|------|------------------
one                | 0.003191949    | 1.00     | 1    | 0.003191949      
two                | 0.002127428    | 0.67     | 2    | 0.001063714      
18 characters long | 1e-07          | 0.00     | 1    | 1e-07            
Calculating differential geometry terms
	Option ddx:first = C2 ()
	Option ddx:upwind = C2 ()
	Option ddy:first = C2 ()
	Option ddy:upwind = C2 ()
	Option ddz:first = C2 ()
	Option ddz:upwind = C2 ()
	Option ddy:first = C2 ()
	Option ddy:upwind = C2 ()
	Option ddx:first = C2 ()
	Option ddx:upwind = C2 ()
	Option ddy:first = C2 ()
	Option ddy:upwind = C2 ()
	Option ddz:first = C2 ()
	Option ddz:upwind = C2 ()
	Option ddy:first = C2 ()
	Option ddy:upwind = C2 ()
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/field/test_field.cxx:238: Failure
Expected: getUniform(nonuniform) throws an exception of type BoutException.
  Actual: it throws fmt::v10::format_error with description "argument not found".
[  FAILED  ] FieldTest.GetUniformFalse3D (0 ms)
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/field/test_field.cxx:251: Failure
Expected: getUniform(nonuniform) throws an exception of type BoutException.
  Actual: it throws fmt::v10::format_error with description "argument not found".
[  FAILED  ] FieldTest.GetUniformFalse2D (0 ms)
[==========] 2158 tests from 141 test suites ran. (3171 ms total)
[  PASSED  ] 2156 tests.
0% tests passed, 1 tests failed out of 1
Total Test time (real) =   3.71 sec
The following tests FAILED:
	  1 - serial_tests (Failed)
Errors while running CTest
make[3]: *** [CMakeFiles/check-unit-tests.dir/build.make:73: CMakeFiles/check-unit-tests] Error 8
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make[2]: *** [CMakeFiles/Makefile2:2743: CMakeFiles/check-unit-tests.dir/all] Error 2
make[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make[1]: *** [CMakeFiles/Makefile2:2830: CMakeFiles/check.dir/rule] Error 2
make[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_mpich'
make: *** [Makefile:286: check] Error 2
++ exit 0
+ popd
~/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea
+ '[' mpich = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/mpich/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/mpich/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/mpich/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/mpich-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/mpich-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/mpich-x86_64
+ eval 'unset LD_LIBRARY_PATH;
unset MPI_COMPILER;
MANPATH=/usr/share/man:; export MANPATH;
unset MPI_INCLUDE;
unset MPI_MAN;
unset MPI_PYTHON_SITEARCH;
unset _LMFILES_;
unset LOADEDMODULES;
PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
unset MPI_PYTHON3_SITEARCH;
unset MPI_FORTRAN_MOD_DIR;
unset MPI_HOME;
unset __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH;
unset MPI_SYSCONFIG;
unset MPI_SUFFIX;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
unset MPI_PYTHON2_SITEARCH;
unset MPI_LIB;
PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
unset MPI_BIN;
test 0;'
++ unset LD_LIBRARY_PATH
++ unset MPI_COMPILER
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset MPI_MAN
++ unset MPI_PYTHON_SITEARCH
++ unset _LMFILES_
++ unset LOADEDMODULES
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_FORTRAN_MOD_DIR
++ unset MPI_HOME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SYSCONFIG
++ unset MPI_SUFFIX
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_PYTHON2_SITEARCH
++ unset MPI_LIB
++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ for mpi in mpich openmpi
+ '[' openmpi = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n 'LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
LOADEDMODULES=; export LOADEDMODULES;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
LOADEDMODULES=; export LOADEDMODULES;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ LOADEDMODULES=
++++ export LOADEDMODULES
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module load mpi/openmpi-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw load mpi/openmpi-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh load mpi/openmpi-x86_64
+ eval 'MPI_COMPILER=openmpi-x86_64; export MPI_COMPILER;
LD_LIBRARY_PATH=/usr/lib64/openmpi/lib; export LD_LIBRARY_PATH;
MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:; export MANPATH;
MPI_INCLUDE=/usr/include/openmpi-x86_64; export MPI_INCLUDE;
MPI_MAN=/usr/share/man/openmpi-x86_64; export MPI_MAN;
_LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64; export _LMFILES_;
LOADEDMODULES=mpi/openmpi-x86_64; export LOADEDMODULES;
PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/openmpi; export MPI_PYTHON3_SITEARCH;
MPI_HOME=/usr/lib64/openmpi; export MPI_HOME;
MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi; export MPI_FORTRAN_MOD_DIR;
__MODULES_LMALTNAME=mpi/openmpi-x86_64\&as\|mpi/default\&as\|mpi/latest; export __MODULES_LMALTNAME;
__MODULES_LMCONFLICT=mpi/openmpi-x86_64\&mpi; export __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:2; export __MODULES_SHARE_MANPATH;
MPI_SUFFIX=_openmpi; export MPI_SUFFIX;
MPI_SYSCONFIG=/etc/openmpi-x86_64; export MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
MPI_LIB=/usr/lib64/openmpi/lib; export MPI_LIB;
PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
MPI_BIN=/usr/lib64/openmpi/bin; export MPI_BIN;
test 0;'
++ MPI_COMPILER=openmpi-x86_64
~/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi ~/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea
#!/bin/bash
# Cores: 3
make || exit
test -z $MPIRUN  && MPIRUN='mpirun -np'
# Kill the test after 3 seconds, if it hasn't already exited
OMP_NUM_THREADS=1 $MPIRUN 3 timeout 30s ./test-coordinates-initialization
e=$?
if test $e -ne 0
then
    echo "The test failed. That can be caused by a timeout."
    echo "If this test is run on high load, it may fail occasionally."
    echo "The load is:"
    uptime
fi
exit $e
++ export MPI_COMPILER
++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
++ export LD_LIBRARY_PATH
++ MANPATH=/usr/share/man/openmpi-x86_64:/usr/share/man:
++ export MANPATH
++ MPI_INCLUDE=/usr/include/openmpi-x86_64
++ export MPI_INCLUDE
++ MPI_MAN=/usr/share/man/openmpi-x86_64
++ export MPI_MAN
++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-x86_64
++ export _LMFILES_
++ LOADEDMODULES=mpi/openmpi-x86_64
++ export LOADEDMODULES
++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.11/site-packages/openmpi
++ export MPI_PYTHON3_SITEARCH
++ MPI_HOME=/usr/lib64/openmpi
++ export MPI_HOME
++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi
++ export MPI_FORTRAN_MOD_DIR
++ __MODULES_LMALTNAME='mpi/openmpi-x86_64&as|mpi/default&as|mpi/latest'
++ export __MODULES_LMALTNAME
++ __MODULES_LMCONFLICT='mpi/openmpi-x86_64&mpi'
++ export __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:2
++ export __MODULES_SHARE_MANPATH
++ MPI_SUFFIX=_openmpi
++ export MPI_SUFFIX
++ MPI_SYSCONFIG=/etc/openmpi-x86_64
++ export MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ MPI_LIB=/usr/lib64/openmpi/lib
++ export MPI_LIB
++ PATH=/usr/lib64/openmpi/bin:/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ MPI_BIN=/usr/lib64/openmpi/bin
++ export MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ export OMPI_MCA_rmaps_base_oversubscribe=1
+ OMPI_MCA_rmaps_base_oversubscribe=1
+ pushd build_openmpi
+ export OMPI_MCA_rmaps_base_oversubscribe=yes
+ OMPI_MCA_rmaps_base_oversubscribe=yes
+ export HDF5_USE_FILE_LOCKING=FALSE
+ HDF5_USE_FILE_LOCKING=FALSE
+ export BOUT_TEST_TIMEOUT=15m
+ BOUT_TEST_TIMEOUT=15m
+ sed 's/ 3s / 30s /' tests/integrated/test-coordinates-initialization/runtest
+ make -j2 build-check
/usr/bin/cmake -S/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea -B/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi --check-build-system CMakeFiles/Makefile.cmake 0
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CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/rkgeneric.cxx.o CMakeFiles/bout++.dir/src/solver/impls/rkgeneric/rkscheme.cxx.o CMakeFiles/bout++.dir/src/solver/impls/slepc/slepc.cxx.o CMakeFiles/bout++.dir/src/solver/impls/snes/snes.cxx.o "CMakeFiles/bout++.dir/src/solver/impls/split-rk/split-rk.cxx.o" CMakeFiles/bout++.dir/src/solver/solver.cxx.o CMakeFiles/bout++.dir/src/sys/bout_types.cxx.o CMakeFiles/bout++.dir/src/sys/boutcomm.cxx.o CMakeFiles/bout++.dir/src/sys/boutexception.cxx.o CMakeFiles/bout++.dir/src/sys/derivs.cxx.o CMakeFiles/bout++.dir/src/sys/expressionparser.cxx.o CMakeFiles/bout++.dir/src/sys/generator_context.cxx.o CMakeFiles/bout++.dir/src/sys/hyprelib.cxx.o CMakeFiles/bout++.dir/src/sys/msg_stack.cxx.o CMakeFiles/bout++.dir/src/sys/options.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o CMakeFiles/bout++.dir/src/sys/output.cxx.o CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o CMakeFiles/bout++.dir/src/sys/range.cxx.o CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o CMakeFiles/bout++.dir/src/sys/timer.cxx.o CMakeFiles/bout++.dir/src/sys/type_name.cxx.o CMakeFiles/bout++.dir/src/sys/utils.cxx.o "CMakeFiles/bout++.dir/bout++-time.cxx.o"  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib: /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/libfmt.so.10.0.0 lib/libpvode.so.1.0.0 lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl -ldl /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libnetcdf.so /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 
[  2%] Linking CXX shared library ../../../../../lib/libgtest.so
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/externalpackages/googletest/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/gtest.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgtest.so.1.10.0 -o ../../../../../lib/libgtest.so.1.10.0 "CMakeFiles/gtest.dir/src/gtest-all.cc.o" 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplace/impls/spt/spt.cxx: In member function '__ct_base ':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplace/impls/spt/spt.cxx:68:37: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   68 |   alldata = new SPT_data[ye - ys + 1];
      |                                     ^
/usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here
  128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/externalpackages/googletest/googletest && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib/libgtest.so.1.10.0 ../../../../../lib/libgtest.so.1.10.0 ../../../../../lib/libgtest.so
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make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[  2%] Building CXX object tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/externalpackages/googletest/googlemock && /usr/lib64/openmpi/bin/mpicxx -DGTEST_CREATE_SHARED_LIBRARY=1 -DGTEST_HAS_PTHREAD=0 -Dgmock_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -Wall -Wshadow -Werror -Wno-error=dangling-else -DGTEST_HAS_PTHREAD=0 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -MD -MT tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o -MF CMakeFiles/gmock.dir/src/gmock-all.cc.o.d -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/src/gmock-all.cc
/usr/bin/cmake -E cmake_symlink_library lib/libbout++.so.5.0.0 lib/libbout++.so.5.0.0 lib/libbout++.so
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 42%] Built target bout++
make  -f tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build.make tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/MMS/wave-1d-y /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/MMS/wave-1d-y /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 42%] Building CXX object tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/MMS/wave-1d-y && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/MMS/wave-1d-y -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o -MF CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o.d -o CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/MMS/wave-1d-y/wave.cxx
[ 44%] Linking CXX shared library ../../../../../lib/libgmock.so
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/externalpackages/googletest/googlemock && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/gmock.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgmock.so.1.10.0 -o ../../../../../lib/libgmock.so.1.10.0 "CMakeFiles/gmock.dir/src/gmock-all.cc.o"  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../../../lib/libgtest.so.1.10.0 
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/externalpackages/googletest/googlemock && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib/libgmock.so.1.10.0 ../../../../../lib/libgmock.so.1.10.0 ../../../../../lib/libgmock.so
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 44%] Built target gmock
make  -f tests/MMS/advection/CMakeFiles/MMS-advection.dir/build.make tests/MMS/advection/CMakeFiles/MMS-advection.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/MMS/advection /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/MMS/advection /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/MMS/advection/CMakeFiles/MMS-advection.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/MMS/advection/CMakeFiles/MMS-advection.dir/build.make tests/MMS/advection/CMakeFiles/MMS-advection.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 44%] Building CXX object tests/MMS/advection/CMakeFiles/MMS-advection.dir/advection.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/MMS/advection && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/advection/CMakeFiles/MMS-advection.dir/advection.cxx.o -MF CMakeFiles/MMS-advection.dir/advection.cxx.o.d -o CMakeFiles/MMS-advection.dir/advection.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/MMS/advection/advection.cxx
[ 44%] Linking CXX executable wave
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/MMS/wave-1d-y && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-wave-1d-y.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/MMS-wave-1d-y.dir/link.d "CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o" -o wave  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 44%] Built target MMS-wave-1d-y
make  -f tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/build.make tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/MMS/diffusion /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/MMS/diffusion /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 44%] Building CXX object tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/MMS/diffusion && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/MMS/diffusion -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/diffusion/CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o -MF CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o.d -o CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/MMS/diffusion/diffusion.cxx
[ 44%] Linking CXX executable advection
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/MMS/advection && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-advection.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/MMS-advection.dir/link.d "CMakeFiles/MMS-advection.dir/advection.cxx.o" -o advection  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
[ 44%] Linking CXX executable cyto
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/MMS/diffusion && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-diffusion.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/MMS-diffusion.dir/link.d "CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o" -o cyto  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 44%] Built target MMS-advection
make  -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/DependInfo.cmake "--color="
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make  -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 45%] Building CXX object tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/wave.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/MMS/wave-1d && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/MMS/wave-1d -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/wave.cxx.o -MF CMakeFiles/MMS-wave-1d.dir/wave.cxx.o.d -o CMakeFiles/MMS-wave-1d.dir/wave.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/MMS/wave-1d/wave.cxx
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 45%] Built target MMS-diffusion
make  -f tests/unit/CMakeFiles/serial_tests.dir/build.make tests/unit/CMakeFiles/serial_tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/CMakeFiles/serial_tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/unit/CMakeFiles/serial_tests.dir/build.make tests/unit/CMakeFiles/serial_tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 45%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/bout_test_main.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/bout_test_main.cxx.o -MF CMakeFiles/serial_tests.dir/bout_test_main.cxx.o.d -o CMakeFiles/serial_tests.dir/bout_test_main.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout_test_main.cxx
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout_test_main.cxx: In function 'int main(int, char**)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout_test_main.cxx:29:18: warning: unused variable 'hyprelib' [-Wunused-variable]
   29 |   bout::HypreLib hyprelib{};
      |                  ^~~~~~~~
[ 45%] Linking CXX executable wave
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/MMS/wave-1d && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-wave-1d.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/MMS-wave-1d.dir/link.d "CMakeFiles/MMS-wave-1d.dir/wave.cxx.o" -o wave  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
[ 45%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_field.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_field.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_field.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/field/test_field.cxx
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 45%] Built target MMS-wave-1d
make  -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-yupdown-weights /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-yupdown-weights /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build.make tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 45%] Building CXX object tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-yupdown-weights && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-yupdown-weights -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-yupdown-weights/CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o -MF CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o.d -o CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-yupdown-weights/test_yupdown_weights.cxx
[ 47%] Linking CXX executable test_yupdown_weights
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-yupdown-weights && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-yupdown-weights.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-yupdown-weights.dir/link.d "CMakeFiles/test-yupdown-weights.dir/test_yupdown_weights.cxx.o" -o test_yupdown_weights  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 47%] Built target test-yupdown-weights
make  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 48%] Generating resolve_enum.pxd
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.11 generate.py resolve_enum.pxd.jinja /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/resolve_enum.pxd
[ 48%] Generating boutcpp.pxd
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.11 generate.py boutcpp.pxd.jinja /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/boutcpp.pxd
[ 48%] Generating boutpp.pyx
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.11 generate.py boutpp.pyx.jinja /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/boutpp.pyx
[ 50%] Generating helper.cxx
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.11 generate.py helper.cxx.jinja /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/helper.cxx
[ 50%] Generating helper.h
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E make_directory /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build && /usr/bin/cmake -E env PYTHONPATH=/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/..: /usr/bin/python3.11 generate.py helper.h.jinja /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/helper.h
[ 50%] Cythonizing python interface
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy boutpp.pyx libboutpp.pyx
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/python3.11 -m cython libboutpp.pyx --cplus -3 -X binding=True -X embedsignature=True
warning: resolve_enum.pxd:49:21: 'deflt' redeclared 
warning: resolve_enum.pxd:189:24: 'Standard' redeclared 
warning: resolve_enum.pxd:223:15: 'Standard' redeclared 
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 50%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/helper.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_311_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build -I/usr/include/python3.11 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/helper.cxx.o -MF CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/helper.cxx.o.d -o CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/helper.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/helper.cxx
[ 51%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/field/test_field2d.cxx
[ 51%] Building CXX object tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/libboutpp.cpp.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -Dboutpp_cpython_311_x86_64_linux_gnu_EXPORTS -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build -I/usr/include/python3.11 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -fPIC -MD -MT tools/pylib/_boutpp_build/CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/libboutpp.cpp.o -MF CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/libboutpp.cpp.o.d -o CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/libboutpp.cpp.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp
In file included from /usr/include/numpy/ndarraytypes.h:1940,
                 from /usr/include/numpy/ndarrayobject.h:12,
                 from /usr/include/numpy/arrayobject.h:5,
                 from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:793:
/usr/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
   17 | #warning "Using deprecated NumPy API, disable it with " \
      |  ^~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:30516:46: warning: '__pyx_obj_9libboutpp_Vector2D* __pyx_f_9libboutpp_v2dFromObj(Vector2D)' defined but not used [-Wunused-function]
30516 | static struct __pyx_obj_9libboutpp_Vector2D *__pyx_f_9libboutpp_v2dFromObj(Vector2D __pyx_v_i) {
      |                                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp: In function '__pyx_f_12resolve_enum_resolve_cell_loc(_object*)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56447:10: warning: '__pyx_r' may be used uninitialized [-Wmaybe-uninitialized]
56447 |   return __pyx_r;
      |          ^~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:56090:12: note: '__pyx_r' was declared here
56090 |   CELL_LOC __pyx_r;
      |            ^~~~~~~
[ 51%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/field/test_field3d.cxx
In function '__pyx_pf_9libboutpp_48bracket(_object*, __pyx_obj_9libboutpp_Field3D*, __pyx_obj_9libboutpp_Field3D*, _object*, _object*)',
    inlined from '__pyx_pw_9libboutpp_49bracket(_object*, _object*, _object*)' at /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:48665:42:
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:48741:65: warning: '__pyx_r' may be used uninitialized [-Wmaybe-uninitialized]
48741 |   __pyx_t_1 = ((PyObject *)__pyx_f_9libboutpp_f3dFromObj(bracket((__pyx_v_a->cobj[0]), (__pyx_v_b->cobj[0]), __pyx_v_method_, __pyx_v_outloc_))); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 2901, __pyx_L1_error)
      |                                                          ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp: In function '__pyx_pw_9libboutpp_49bracket(_object*, _object*, _object*)':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpp:57958:18: note: '__pyx_r' was declared here
57958 |   BRACKET_METHOD __pyx_r;
      |                  ^~~~~~~
[ 51%] Linking CXX shared library libboutpp.cpython-311-x86_64-linux-gnu.so
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E cmake_link_script CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libboutpp.cpython-311-x86_64-linux-gnu.so -o libboutpp.cpython-311-x86_64-linux-gnu.so "CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/libboutpp.cpp.o" "CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/helper.cxx.o" "CMakeFiles/boutpp.cpython-311-x86_64-linux-gnu.dir/boutexception_helper.cxx.o"  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib: ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
[ 51%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_field_factory.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_field_factory.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_field_factory.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_field_factory.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/field/test_field_factory.cxx
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 51%] Built target boutpp.cpython-311-x86_64-linux-gnu
make  -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/depend
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-backtrace /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-backtrace /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build.make tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 52%] Building CXX object tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/boutexcept.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-backtrace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-backtrace -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-backtrace/CMakeFiles/test-backtrace.dir/boutexcept.cxx.o -MF CMakeFiles/test-backtrace.dir/boutexcept.cxx.o.d -o CMakeFiles/test-backtrace.dir/boutexcept.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-backtrace/boutexcept.cxx
[ 52%] Linking CXX executable boutexcept
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-backtrace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-backtrace.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-backtrace.dir/link.d "CMakeFiles/test-backtrace.dir/boutexcept.cxx.o" -o boutexcept  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 52%] Built target test-backtrace
make  -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-beuler /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-beuler /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build.make tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 52%] Building CXX object tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/test_beuler.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-beuler && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-beuler -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-beuler/CMakeFiles/test_beuler.dir/test_beuler.cxx.o -MF CMakeFiles/test_beuler.dir/test_beuler.cxx.o.d -o CMakeFiles/test_beuler.dir/test_beuler.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-beuler/test_beuler.cxx
[ 52%] Linking CXX executable test_beuler
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-beuler && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_beuler.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test_beuler.dir/link.d CMakeFiles/test_beuler.dir/test_beuler.cxx.o -o test_beuler  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 52%] Built target test_beuler
make  -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-bout-override-default-option /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build.make tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 52%] Building CXX object tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-bout-override-default-option && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-bout-override-default-option -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-bout-override-default-option/CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o -MF CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o.d -o CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-bout-override-default-option/test-bout-override-default-option.cxx
In file included from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-bout-override-default-option/test-bout-override-default-option.cxx:1:
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/options.hxx:3:2: warning: #warning Header "options.hxx" has moved to "bout/options.hxx". Run `bin/bout-v5-header-upgrader.py` to fix [-Wcpp]
    3 | #warning Header "options.hxx" has moved to "bout/options.hxx". Run `bin/bout-v5-header-upgrader.py` to fix
      |  ^~~~~~~
[ 52%] Linking CXX executable test-bout-override-default-option
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-bout-override-default-option && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-bout-override-default-option.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-bout-override-default-option.dir/link.d "CMakeFiles/test-bout-override-default-option.dir/test-bout-override-default-option.cxx.o" -o test-bout-override-default-option  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
[ 52%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_fieldgroup.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_fieldgroup.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_fieldgroup.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_fieldgroup.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/field/test_fieldgroup.cxx
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 52%] Built target test-bout-override-default-option
make  -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-command-args /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-command-args /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build.make tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 54%] Building CXX object tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/command-args.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-command-args && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-command-args -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-command-args/CMakeFiles/test-command-args.dir/command-args.cxx.o -MF CMakeFiles/test-command-args.dir/command-args.cxx.o.d -o CMakeFiles/test-command-args.dir/command-args.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-command-args/command-args.cxx
[ 54%] Linking CXX executable command-args
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-command-args && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-command-args.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-command-args.dir/link.d "CMakeFiles/test-command-args.dir/command-args.cxx.o" -o command-args  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 54%] Built target test-command-args
make  -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-communications /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-communications /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-communications/CMakeFiles/test-communications.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-communications/CMakeFiles/test-communications.dir/build.make tests/integrated/test-communications/CMakeFiles/test-communications.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 54%] Building CXX object tests/integrated/test-communications/CMakeFiles/test-communications.dir/test-communications.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-communications && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-communications -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-communications/CMakeFiles/test-communications.dir/test-communications.cxx.o -MF CMakeFiles/test-communications.dir/test-communications.cxx.o.d -o CMakeFiles/test-communications.dir/test-communications.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-communications/test-communications.cxx
[ 55%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_fieldperp.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_fieldperp.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_fieldperp.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_fieldperp.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/field/test_fieldperp.cxx
[ 55%] Linking CXX executable test-communications
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-communications && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-communications.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-communications.dir/link.d "CMakeFiles/test-communications.dir/test-communications.cxx.o" -o test-communications  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 55%] Built target test-communications
make  -f tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/build.make tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-coordinates-initialization /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
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make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 55%] Building CXX object tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-coordinates-initialization && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-coordinates-initialization -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-coordinates-initialization/CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o -MF CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o.d -o CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-coordinates-initialization/test-coordinates-initialization.cxx
[ 57%] Linking CXX executable test-coordinates-initialization
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-coordinates-initialization && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-coordinates-initialization.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-coordinates-initialization.dir/link.d "CMakeFiles/test-coordinates-initialization.dir/test-coordinates-initialization.cxx.o" -o test-coordinates-initialization  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
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make  -f tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/build.make tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-cyclic /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-cyclic /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/DependInfo.cmake "--color="
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[ 57%] Building CXX object tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-cyclic && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-cyclic -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-cyclic/CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o -MF CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o.d -o CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-cyclic/test_cyclic.cxx
[ 57%] Linking CXX executable test_cyclic
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-cyclic && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-cyclic.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-cyclic.dir/link.d "CMakeFiles/test-cyclic.dir/test_cyclic.cxx.o" -o test_cyclic  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
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make  -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/depend
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-delp2 /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-delp2 /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/DependInfo.cmake "--color="
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make  -f tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build.make tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 57%] Building CXX object tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/test_delp2.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-delp2 && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-delp2 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-delp2/CMakeFiles/test-delp2.dir/test_delp2.cxx.o -MF CMakeFiles/test-delp2.dir/test_delp2.cxx.o.d -o CMakeFiles/test-delp2.dir/test_delp2.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-delp2/test_delp2.cxx
[ 57%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_initialprofiles.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_initialprofiles.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_initialprofiles.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_initialprofiles.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/field/test_initialprofiles.cxx
[ 57%] Linking CXX executable test_delp2
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-delp2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-delp2.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-delp2.dir/link.d "CMakeFiles/test-delp2.dir/test_delp2.cxx.o" -o test_delp2  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 57%] Built target test-delp2
make  -f tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/build.make tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-datafilefacade /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-datafilefacade /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
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make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 57%] Building CXX object tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-datafilefacade && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-datafilefacade -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-datafilefacade/CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o -MF CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o.d -o CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-datafilefacade/test-datafile-facade.cxx
[ 57%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_vector2d.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_vector2d.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_vector2d.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_vector2d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/field/test_vector2d.cxx
[ 58%] Linking CXX executable test-datafile-facade
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-datafilefacade && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-datafile-facade.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-datafile-facade.dir/link.d "CMakeFiles/test-datafile-facade.dir/test-datafile-facade.cxx.o" -o test-datafile-facade  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 58%] Built target test-datafile-facade
make  -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-drift-instability /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-drift-instability /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build.make tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 58%] Building CXX object tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/2fluid.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-drift-instability && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-drift-instability -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-drift-instability/CMakeFiles/test-drift-instability.dir/2fluid.cxx.o -MF CMakeFiles/test-drift-instability.dir/2fluid.cxx.o.d -o CMakeFiles/test-drift-instability.dir/2fluid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-drift-instability/2fluid.cxx
[ 58%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_vector3d.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_vector3d.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_vector3d.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_vector3d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/field/test_vector3d.cxx
[ 58%] Linking CXX executable 2fluid
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-drift-instability && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-drift-instability.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-drift-instability.dir/link.d "CMakeFiles/test-drift-instability.dir/2fluid.cxx.o" -o 2fluid  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 58%] Built target test-drift-instability
make  -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-drift-instability-staggered /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build.make tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 58%] Building CXX object tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-drift-instability-staggered && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-drift-instability-staggered -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-drift-instability-staggered/CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o -MF CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o.d -o CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-drift-instability-staggered/2fluid.cxx
[ 60%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/field/test_where.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/field/test_where.cxx.o -MF CMakeFiles/serial_tests.dir/field/test_where.cxx.o.d -o CMakeFiles/serial_tests.dir/field/test_where.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/field/test_where.cxx
[ 61%] Linking CXX executable 2fluid
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-drift-instability-staggered && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-drift-instability-staggered.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-drift-instability-staggered.dir/link.d "CMakeFiles/test-drift-instability-staggered.dir/2fluid.cxx.o" -o 2fluid  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
[ 61%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_array.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_array.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_array.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_array.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_array.cxx
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 61%] Built target test-drift-instability-staggered
make  -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-fieldgroupComm /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build.make tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 61%] Building CXX object tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-fieldgroupComm && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-fieldgroupComm -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-fieldgroupComm/CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o -MF CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o.d -o CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-fieldgroupComm/test_fieldgroupcomm.cxx
[ 61%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_assert.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_assert.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_assert.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_assert.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_assert.cxx
[ 61%] Linking CXX executable test_fieldgroupcomm
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-fieldgroupComm && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-fieldgroupComm.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-fieldgroupComm.dir/link.d "CMakeFiles/test-fieldgroupComm.dir/test_fieldgroupcomm.cxx.o" -o test_fieldgroupcomm  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
[ 61%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_bout_enum_class.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_bout_enum_class.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_bout_enum_class.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_bout_enum_class.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_bout_enum_class.cxx
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 61%] Built target test-fieldgroupComm
make  -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-griddata /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-griddata /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build.make tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 61%] Building CXX object tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/test_griddata.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-griddata && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-griddata -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-griddata/CMakeFiles/test-griddata.dir/test_griddata.cxx.o -MF CMakeFiles/test-griddata.dir/test_griddata.cxx.o.d -o CMakeFiles/test-griddata.dir/test_griddata.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-griddata/test_griddata.cxx
[ 62%] Linking CXX executable test_griddata
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-griddata && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-griddata.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-griddata.dir/link.d "CMakeFiles/test-griddata.dir/test_griddata.cxx.o" -o test_griddata  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 62%] Built target test-griddata
make  -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-griddata-yboundary-guards /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build.make tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 62%] Building CXX object tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-griddata-yboundary-guards && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-griddata-yboundary-guards -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-griddata-yboundary-guards/CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o -MF CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o.d -o CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-griddata-yboundary-guards/test_griddata.cxx
[ 64%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_deriv_store.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_deriv_store.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_deriv_store.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_deriv_store.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_deriv_store.cxx
[ 64%] Linking CXX executable test_griddata
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-griddata-yboundary-guards && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-griddata-yboundary-guards.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-griddata-yboundary-guards.dir/link.d "CMakeFiles/test-griddata-yboundary-guards.dir/test_griddata.cxx.o" -o test_griddata  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 64%] Built target test-griddata-yboundary-guards
make  -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-gyro /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-gyro /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build.make tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 64%] Building CXX object tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/test_gyro.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-gyro && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-gyro -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-gyro/CMakeFiles/test-gyro.dir/test_gyro.cxx.o -MF CMakeFiles/test-gyro.dir/test_gyro.cxx.o.d -o CMakeFiles/test-gyro.dir/test_gyro.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-gyro/test_gyro.cxx
[ 65%] Linking CXX executable test_gyro
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-gyro && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-gyro.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-gyro.dir/link.d "CMakeFiles/test-gyro.dir/test_gyro.cxx.o" -o test_gyro  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
[ 65%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_generic_factory.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_generic_factory.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_generic_factory.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_generic_factory.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_generic_factory.cxx
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 65%] Built target test-gyro
make  -f tests/integrated/test-initial/CMakeFiles/test-initial.dir/build.make tests/integrated/test-initial/CMakeFiles/test-initial.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-initial /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-initial /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-initial/CMakeFiles/test-initial.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
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make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-initial && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-initial -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-initial/CMakeFiles/test-initial.dir/test_initial.cxx.o -MF CMakeFiles/test-initial.dir/test_initial.cxx.o.d -o CMakeFiles/test-initial.dir/test_initial.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-initial/test_initial.cxx
[ 65%] Linking CXX executable test_initial
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-initial && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-initial.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-initial.dir/link.d "CMakeFiles/test-initial.dir/test_initial.cxx.o" -o test_initial  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
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make  -f tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/build.make tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-interchange-instability /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-interchange-instability /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
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make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 65%] Building CXX object tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-interchange-instability && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-interchange-instability -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interchange-instability/CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o -MF CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o.d -o CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-interchange-instability/2fluid.cxx
[ 65%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_macro_for_each.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_macro_for_each.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_macro_for_each.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_macro_for_each.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_macro_for_each.cxx
[ 65%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_monitor.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_monitor.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_monitor.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_monitor.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_monitor.cxx
[ 67%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_petsc_indexer.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_petsc_indexer.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_petsc_indexer.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_petsc_indexer.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_petsc_indexer.cxx
[ 68%] Linking CXX executable 2fluid
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-interchange-instability && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interchange-instability.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-interchange-instability.dir/link.d "CMakeFiles/test-interchange-instability.dir/2fluid.cxx.o" -o 2fluid  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
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make  -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-interpolate /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-interpolate /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build.make tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 68%] Building CXX object tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-interpolate && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-interpolate -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interpolate/CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o -MF CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o.d -o CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-interpolate/test_interpolate.cxx
[ 68%] Linking CXX executable test_interpolate
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-interpolate && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interpolate.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-interpolate.dir/link.d "CMakeFiles/test-interpolate.dir/test_interpolate.cxx.o" -o test_interpolate  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 68%] Built target test-interpolate
make  -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-interpolate-z /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-interpolate-z /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build.make tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 68%] Building CXX object tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-interpolate-z && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-interpolate-z -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-interpolate-z/CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o -MF CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o.d -o CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-interpolate-z/test_interpolate.cxx
[ 68%] Linking CXX executable test_interpolate
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-interpolate-z && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-interpolate-z.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-interpolate-z.dir/link.d "CMakeFiles/test-interpolate-z.dir/test_interpolate.cxx.o" -o test_interpolate  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 68%] Built target test-interpolate-z
make  -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-invertable-operator /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-invertable-operator /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build.make tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 70%] Building CXX object tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-invertable-operator && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-invertable-operator -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-invertable-operator/CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o -MF CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o.d -o CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-invertable-operator/invertable_operator.cxx
In file included from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-invertable-operator/invertable_operator.cxx:4:
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx: In instantiation of 'PetscErrorCode bout::inversion::InvertableOperator<T>::setup() [with T = Field3D; PetscErrorCode = int]':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-invertable-operator/invertable_operator.cxx:51:19:   required from here
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:222:30: warning: 'virtual bool Mesh::firstY() const' is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  222 |         if (localmesh->firstY() or localmesh->lastY()) {
      |             ~~~~~~~~~~~~~~~~~^~
In file included from /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:44:
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:441:66: note: declared here
  441 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:222:30: warning: 'virtual bool Mesh::firstY() const' is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  222 |         if (localmesh->firstY() or localmesh->lastY()) {
      |             ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:441:66: note: declared here
  441 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:222:52: warning: 'virtual bool Mesh::lastY() const' is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  222 |         if (localmesh->firstY() or localmesh->lastY()) {
      |                                    ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:445:65: note: declared here
  445 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:222:52: warning: 'virtual bool Mesh::lastY() const' is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  222 |         if (localmesh->firstY() or localmesh->lastY()) {
      |                                    ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:445:65: note: declared here
  445 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:225:36: warning: 'virtual bool Mesh::firstY() const' is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  225 |               if (localmesh->firstY()) {
      |                   ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:441:66: note: declared here
  441 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:225:36: warning: 'virtual bool Mesh::firstY() const' is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  225 |               if (localmesh->firstY()) {
      |                   ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:441:66: note: declared here
  441 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:231:35: warning: 'virtual bool Mesh::lastY() const' is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  231 |               if (localmesh->lastY()) {
      |                   ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:445:65: note: declared here
  445 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:231:35: warning: 'virtual bool Mesh::lastY() const' is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  231 |               if (localmesh->lastY()) {
      |                   ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:445:65: note: declared here
  445 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:262:30: warning: 'virtual bool Mesh::firstY() const' is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  262 |         if (localmesh->firstY() or localmesh->lastY()) {
      |             ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:441:66: note: declared here
  441 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:262:30: warning: 'virtual bool Mesh::firstY() const' is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  262 |         if (localmesh->firstY() or localmesh->lastY()) {
      |             ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:441:66: note: declared here
  441 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:262:52: warning: 'virtual bool Mesh::lastY() const' is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  262 |         if (localmesh->firstY() or localmesh->lastY()) {
      |                                    ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:445:65: note: declared here
  445 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:262:52: warning: 'virtual bool Mesh::lastY() const' is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  262 |         if (localmesh->firstY() or localmesh->lastY()) {
      |                                    ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:445:65: note: declared here
  445 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:265:36: warning: 'virtual bool Mesh::firstY() const' is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  265 |               if (localmesh->firstY()) {
      |                   ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:441:66: note: declared here
  441 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:265:36: warning: 'virtual bool Mesh::firstY() const' is deprecated: Please use firstY(xind) instead [-Wdeprecated-declarations]
  265 |               if (localmesh->firstY()) {
      |                   ~~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:441:66: note: declared here
  441 |   [[deprecated("Please use firstY(xind) instead")]] virtual bool firstY() const = 0;
      |                                                                  ^~~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:270:35: warning: 'virtual bool Mesh::lastY() const' is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  270 |               if (localmesh->lastY()) {
      |                   ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:445:65: note: declared here
  445 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/invertable_operator.hxx:270:35: warning: 'virtual bool Mesh::lastY() const' is deprecated: Please use lastY(xind) instead [-Wdeprecated-declarations]
  270 |               if (localmesh->lastY()) {
      |                   ~~~~~~~~~~~~~~~~^~
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include/bout/mesh.hxx:445:65: note: declared here
  445 |   [[deprecated("Please use lastY(xind) instead")]] virtual bool lastY() const = 0;
      |                                                                 ^~~~~
[ 70%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_petsc_matrix.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_petsc_matrix.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_petsc_matrix.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_petsc_matrix.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_petsc_matrix.cxx
[ 70%] Linking CXX executable invertable_operator
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-invertable-operator && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-invertable-operator.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-invertable-operator.dir/link.d "CMakeFiles/test-invertable-operator.dir/invertable_operator.cxx.o" -o invertable_operator  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 70%] Built target test-invertable-operator
make  -f tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/build.make tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-invpar /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-invpar /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
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make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 70%] Building CXX object tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/test_invpar.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-invpar && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-invpar -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-invpar/CMakeFiles/test-invpar.dir/test_invpar.cxx.o -MF CMakeFiles/test-invpar.dir/test_invpar.cxx.o.d -o CMakeFiles/test-invpar.dir/test_invpar.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-invpar/test_invpar.cxx
[ 70%] Linking CXX executable test_invpar
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-invpar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-invpar.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-invpar.dir/link.d "CMakeFiles/test-invpar.dir/test_invpar.cxx.o" -o test_invpar  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 70%] Built target test-invpar
make  -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplace /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-laplace /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build.make tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 71%] Building CXX object tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/test_laplace.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-laplace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplace -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplace/CMakeFiles/test-laplace.dir/test_laplace.cxx.o -MF CMakeFiles/test-laplace.dir/test_laplace.cxx.o.d -o CMakeFiles/test-laplace.dir/test_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplace/test_laplace.cxx
[ 71%] Linking CXX executable test_laplace
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplace.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-laplace.dir/link.d "CMakeFiles/test-laplace.dir/test_laplace.cxx.o" -o test_laplace  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 71%] Built target test-laplace
make  -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-laplace-petsc3d /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build.make tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 71%] Building CXX object tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-laplace-petsc3d && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplace-petsc3d -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplace-petsc3d/CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o -MF CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o.d -o CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplace-petsc3d/test-laplace3d.cxx
[ 71%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_petsc_setters.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_petsc_setters.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_petsc_setters.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_petsc_setters.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_petsc_setters.cxx
[ 71%] Linking CXX executable test-laplace3d
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-laplace-petsc3d && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplace-petsc3d.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-laplace-petsc3d.dir/link.d "CMakeFiles/test-laplace-petsc3d.dir/test-laplace3d.cxx.o" -o test-laplace3d  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
[ 71%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_petsc_vector.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_petsc_vector.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_petsc_vector.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_petsc_vector.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_petsc_vector.cxx
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 71%] Built target test-laplace-petsc3d
[ 71%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_region.cxx.o
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[ 72%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_single_index_ops.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_single_index_ops.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_single_index_ops.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_single_index_ops.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_single_index_ops.cxx
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[ 72%] Building CXX object tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_template_combinations.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_template_combinations.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_template_combinations.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_template_combinations.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_template_combinations.cxx
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -DGTEST_HAS_PTHREAD=0 -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/bout++ -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/../../include -I//include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock/include -isystem /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/unit/CMakeFiles/serial_tests.dir/include/bout/test_traits.cxx.o -MF CMakeFiles/serial_tests.dir/include/bout/test_traits.cxx.o.d -o CMakeFiles/serial_tests.dir/include/bout/test_traits.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/include/bout/test_traits.cxx
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/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/sys/test_raja.cxx:96:7: warning: multi-line comment [-Wcomment]
   96 | #if 0 // disable temporarily until reconcile iteration space for parallel_forall  under \
      |       ^
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make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-laplacexy-fv /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build.make tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 87%] Building CXX object tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-laplacexy-fv && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplacexy-fv -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexy-fv/CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o -MF CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o.d -o CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplacexy-fv/test-laplacexy.cxx
[ 87%] Linking CXX executable serial_tests
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit && /usr/bin/cmake -E cmake_link_script CMakeFiles/serial_tests.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/serial_tests.dir/link.d CMakeFiles/serial_tests.dir/bout_test_main.cxx.o CMakeFiles/serial_tests.dir/field/test_field.cxx.o CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o CMakeFiles/serial_tests.dir/field/test_field_factory.cxx.o CMakeFiles/serial_tests.dir/field/test_fieldgroup.cxx.o CMakeFiles/serial_tests.dir/field/test_fieldperp.cxx.o CMakeFiles/serial_tests.dir/field/test_initialprofiles.cxx.o CMakeFiles/serial_tests.dir/field/test_vector2d.cxx.o CMakeFiles/serial_tests.dir/field/test_vector3d.cxx.o CMakeFiles/serial_tests.dir/field/test_where.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_array.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_assert.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_bout_enum_class.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_deriv_store.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_generic_factory.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_macro_for_each.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_monitor.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_indexer.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_matrix.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_setters.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_vector.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_region.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_single_index_ops.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_stencil.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_template_combinations.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_traits.cxx.o CMakeFiles/serial_tests.dir/include/test_cyclic_reduction.cxx.o CMakeFiles/serial_tests.dir/include/test_derivs.cxx.o CMakeFiles/serial_tests.dir/include/test_mask.cxx.o CMakeFiles/serial_tests.dir/invert/test_fft.cxx.o CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_petsc3damg.cxx.o CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_cyclic.cxx.o CMakeFiles/serial_tests.dir/mesh/data/test_gridfromoptions.cxx.o CMakeFiles/serial_tests.dir/mesh/parallel/test_shiftedmetric.cxx.o CMakeFiles/serial_tests.dir/mesh/test_boundary_factory.cxx.o CMakeFiles/serial_tests.dir/mesh/test_boutmesh.cxx.o CMakeFiles/serial_tests.dir/mesh/test_coordinates.cxx.o CMakeFiles/serial_tests.dir/mesh/test_coordinates_accessor.cxx.o CMakeFiles/serial_tests.dir/mesh/test_interpolation.cxx.o CMakeFiles/serial_tests.dir/mesh/test_mesh.cxx.o CMakeFiles/serial_tests.dir/mesh/test_paralleltransform.cxx.o CMakeFiles/serial_tests.dir/solver/test_fakesolver.cxx.o CMakeFiles/serial_tests.dir/solver/test_solver.cxx.o CMakeFiles/serial_tests.dir/solver/test_solverfactory.cxx.o CMakeFiles/serial_tests.dir/sys/test_boutexception.cxx.o CMakeFiles/serial_tests.dir/sys/test_expressionparser.cxx.o CMakeFiles/serial_tests.dir/sys/test_msg_stack.cxx.o CMakeFiles/serial_tests.dir/sys/test_options.cxx.o CMakeFiles/serial_tests.dir/sys/test_options_fields.cxx.o CMakeFiles/serial_tests.dir/sys/test_options_netcdf.cxx.o CMakeFiles/serial_tests.dir/sys/test_optionsreader.cxx.o CMakeFiles/serial_tests.dir/sys/test_output.cxx.o CMakeFiles/serial_tests.dir/sys/test_range.cxx.o CMakeFiles/serial_tests.dir/sys/test_timer.cxx.o CMakeFiles/serial_tests.dir/sys/test_type_name.cxx.o CMakeFiles/serial_tests.dir/sys/test_utils.cxx.o CMakeFiles/serial_tests.dir/sys/test_variant.cxx.o CMakeFiles/serial_tests.dir/sys/test_raja.cxx.o CMakeFiles/serial_tests.dir/test_extras.cxx.o CMakeFiles/serial_tests.dir/src/test_bout++.cxx.o -o serial_tests  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../lib/libgmock.so.1.10.0 ../../lib/libbout++.so.5.0.0 ../../lib/libgtest.so.1.10.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../lib/libpvode.so.1.0.0 ../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
[ 87%] Linking CXX executable test-laplacexy
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-laplacexy-fv && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexy-fv.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-laplacexy-fv.dir/link.d "CMakeFiles/test-laplacexy-fv.dir/test-laplacexy.cxx.o" -o test-laplacexy  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 87%] Built target test-laplacexy-fv
make  -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplacexy-short /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-laplacexy-short /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build.make tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 87%] Building CXX object tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-laplacexy-short && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplacexy-short -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexy-short/CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o -MF CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o.d -o CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplacexy-short/test-laplacexy.cxx
[ 87%] Linking CXX executable test-laplacexy
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-laplacexy-short && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexy-short.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-laplacexy-short.dir/link.d "CMakeFiles/test-laplacexy-short.dir/test-laplacexy.cxx.o" -o test-laplacexy  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 87%] Built target test-laplacexy-short
make  -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplacexz /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-laplacexz /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build.make tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 88%] Building CXX object tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-laplacexz && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplacexz -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-laplacexz/CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o -MF CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o.d -o CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-laplacexz/test-laplacexz.cxx
[ 88%] Linking CXX executable test-laplacexz
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-laplacexz && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-laplacexz.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-laplacexz.dir/link.d "CMakeFiles/test-laplacexz.dir/test-laplacexz.cxx.o" -o test-laplacexz  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 88%] Built target test-laplacexz
make  -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-multigrid_laplace /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build.make tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 88%] Building CXX object tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-multigrid_laplace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-multigrid_laplace -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-multigrid_laplace/CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o -MF CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o.d -o CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-multigrid_laplace/test_multigrid_laplace.cxx
[ 88%] Linking CXX executable test_multigrid_laplace
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-multigrid_laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-multigrid-laplace.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-multigrid-laplace.dir/link.d "CMakeFiles/test-multigrid-laplace.dir/test_multigrid_laplace.cxx.o" -o test_multigrid_laplace  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 88%] Built target test-multigrid-laplace
make  -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-naulin-laplace /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-naulin-laplace /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build.make tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 90%] Building CXX object tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-naulin-laplace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-naulin-laplace -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-naulin-laplace/CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o -MF CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o.d -o CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-naulin-laplace/test_naulin_laplace.cxx
[ 90%] Linking CXX executable test_naulin_laplace
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-naulin-laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-naulin-laplace.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-naulin-laplace.dir/link.d "CMakeFiles/test-naulin-laplace.dir/test_naulin_laplace.cxx.o" -o test_naulin_laplace  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 90%] Built target test-naulin-laplace
make  -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-options-netcdf /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-options-netcdf /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build.make tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 90%] Building CXX object tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-options-netcdf && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-options-netcdf -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-options-netcdf/CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o -MF CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o.d -o CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-options-netcdf/test-options-netcdf.cxx
[ 90%] Linking CXX executable test-options-netcdf
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-options-netcdf && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-options-netcdf.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-options-netcdf.dir/link.d "CMakeFiles/test-options-netcdf.dir/test-options-netcdf.cxx.o" -o test-options-netcdf  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 90%] Built target test-options-netcdf
make  -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-petsc_laplace /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-petsc_laplace /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build.make tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 91%] Building CXX object tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-petsc_laplace && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-petsc_laplace -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-petsc_laplace/CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o -MF CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o.d -o CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-petsc_laplace/test_petsc_laplace.cxx
[ 91%] Linking CXX executable test_petsc_laplace
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-petsc_laplace && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-petsc-laplace.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-petsc-laplace.dir/link.d "CMakeFiles/test-petsc-laplace.dir/test_petsc_laplace.cxx.o" -o test_petsc_laplace  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 91%] Built target test-petsc-laplace
make  -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build.make tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 91%] Building CXX object tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-petsc_laplace_MAST-grid -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-petsc_laplace_MAST-grid/CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o -MF CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o.d -o CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-petsc_laplace_MAST-grid/test_petsc_laplace_MAST_grid.cxx
[ 91%] Linking CXX executable test_petsc_laplace_MAST_grid
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-petsc_laplace_MAST-grid && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-petsc-laplace-MAST-grid.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-petsc-laplace-MAST-grid.dir/link.d "CMakeFiles/test-petsc-laplace-MAST-grid.dir/test_petsc_laplace_MAST_grid.cxx.o" -o test_petsc_laplace_MAST_grid  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 91%] Built target test-petsc-laplace-MAST-grid
make  -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-restart-io /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-restart-io /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build.make tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 92%] Building CXX object tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-restart-io && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-restart-io -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-restart-io/CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o -MF CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o.d -o CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-restart-io/test-restart-io.cxx
[ 92%] Linking CXX executable test-restart-io
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-restart-io && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-restart-io.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-restart-io.dir/link.d "CMakeFiles/test-restart-io.dir/test-restart-io.cxx.o" -o test-restart-io  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 92%] Built target test-restart-io
make  -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-restarting /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-restarting /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build.make tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 92%] Building CXX object tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/test_restarting.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-restarting && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-restarting -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-restarting/CMakeFiles/test-restarting.dir/test_restarting.cxx.o -MF CMakeFiles/test-restarting.dir/test_restarting.cxx.o.d -o CMakeFiles/test-restarting.dir/test_restarting.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-restarting/test_restarting.cxx
[ 92%] Linking CXX executable test_restarting
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-restarting && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-restarting.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-restarting.dir/link.d "CMakeFiles/test-restarting.dir/test_restarting.cxx.o" -o test_restarting  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 92%] Built target test-restarting
make  -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-smooth /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-smooth /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build.make tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-smooth && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-smooth -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-smooth/CMakeFiles/test-smooth.dir/test_smooth.cxx.o -MF CMakeFiles/test-smooth.dir/test_smooth.cxx.o.d -o CMakeFiles/test-smooth.dir/test_smooth.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-smooth/test_smooth.cxx
[ 94%] Linking CXX executable test_smooth
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-smooth && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-smooth.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-smooth.dir/link.d "CMakeFiles/test-smooth.dir/test_smooth.cxx.o" -o test_smooth  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-snb /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-snb /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-snb/CMakeFiles/test-snb.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-snb && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-snb.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-snb.dir/link.d "CMakeFiles/test-snb.dir/test_snb.cxx.o" -o test_snb  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-solver && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-solver -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-solver/CMakeFiles/test-solver.dir/test_solver.cxx.o -MF CMakeFiles/test-solver.dir/test_solver.cxx.o.d -o CMakeFiles/test-solver.dir/test_solver.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-solver/test_solver.cxx
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-solver && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-solver.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-solver.dir/link.d "CMakeFiles/test-solver.dir/test_solver.cxx.o" -o test_solver  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
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make  -f tests/integrated/test-squash/CMakeFiles/test-squash.dir/build.make tests/integrated/test-squash/CMakeFiles/test-squash.dir/depend
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-squash /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-squash /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-squash/CMakeFiles/test-squash.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-squash && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-squash -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-squash/CMakeFiles/test-squash.dir/squash.cxx.o -MF CMakeFiles/test-squash.dir/squash.cxx.o.d -o CMakeFiles/test-squash.dir/squash.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-squash/squash.cxx
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-squash && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-squash.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-squash.dir/link.d "CMakeFiles/test-squash.dir/squash.cxx.o" -o squash  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
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make  -f tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/build.make tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-stopCheck /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-stopCheck /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 95%] Building CXX object tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-stopCheck && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-stopCheck -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-stopCheck/CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o -MF CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o.d -o CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-stopCheck/test_stopCheck.cxx
[ 97%] Linking CXX executable test_stopCheck
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-stopCheck && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-stopCheck.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-stopCheck.dir/link.d "CMakeFiles/test-stopCheck.dir/test_stopCheck.cxx.o" -o test_stopCheck  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 97%] Built target test-stopCheck
make  -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-stopCheck-file /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-stopCheck-file /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build.make tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 97%] Building CXX object tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-stopCheck-file && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-stopCheck-file -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-stopCheck-file/CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o -MF CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o.d -o CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-stopCheck-file/test_stopCheck.cxx
[ 97%] Linking CXX executable test_stopCheck
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-stopCheck-file && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-stopCheck-file.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-stopCheck-file.dir/link.d "CMakeFiles/test-stopCheck-file.dir/test_stopCheck.cxx.o" -o test_stopCheck  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 97%] Built target test-stopCheck-file
make  -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-twistshift /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-twistshift /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build.make tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 97%] Building CXX object tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-twistshift && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-twistshift -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-twistshift/CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o -MF CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o.d -o CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-twistshift/test-twistshift.cxx
[ 98%] Linking CXX executable test-twistshift
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-twistshift && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-twistshift.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-twistshift.dir/link.d "CMakeFiles/test-twistshift.dir/test-twistshift.cxx.o" -o test-twistshift  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 98%] Built target test-twistshift
make  -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-twistshift-staggered /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build.make tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 98%] Building CXX object tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-twistshift-staggered && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-twistshift-staggered -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-twistshift-staggered/CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o -MF CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o.d -o CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-twistshift-staggered/test-twistshift.cxx
[ 98%] Linking CXX executable test-twistshift
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-twistshift-staggered && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-twistshift-staggered.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-twistshift-staggered.dir/link.d "CMakeFiles/test-twistshift-staggered.dir/test-twistshift.cxx.o" -o test-twistshift  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 98%] Built target test-twistshift-staggered
make  -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-vec /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-vec /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-vec/CMakeFiles/test-vec.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-vec/CMakeFiles/test-vec.dir/build.make tests/integrated/test-vec/CMakeFiles/test-vec.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 98%] Building CXX object tests/integrated/test-vec/CMakeFiles/test-vec.dir/testVec.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-vec && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-vec -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-vec/CMakeFiles/test-vec.dir/testVec.cxx.o -MF CMakeFiles/test-vec.dir/testVec.cxx.o.d -o CMakeFiles/test-vec.dir/testVec.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-vec/testVec.cxx
[100%] Linking CXX executable testVec
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-vec && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-vec.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-vec.dir/link.d "CMakeFiles/test-vec.dir/testVec.cxx.o" -o testVec  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[100%] Built target test-vec
make  -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-yupdown /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-yupdown /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build.make tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[100%] Building CXX object tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-yupdown && /usr/lib64/openmpi/bin/mpicxx -DCHECK=2 -DFMT_SHARED -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-yupdown -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/include -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include/pvode -I/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/PVODE/include -isystem /usr/include/openmpi-x86_64/petsc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -MD -MT tests/integrated/test-yupdown/CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o -MF CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o.d -o CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o -c /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/integrated/test-yupdown/test_yupdown.cxx
[100%] Linking CXX executable test_yupdown
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/integrated/test-yupdown && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-yupdown.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/test-yupdown.dir/link.d "CMakeFiles/test-yupdown.dir/test_yupdown.cxx.o" -o test_yupdown  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
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make  -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/CMakeFiles/build-check-mms-tests.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
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make  -f tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/build.make tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/CMakeFiles/boutpp.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[100%] Building python interface
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/libboutpp.cpython-311-x86_64-linux-gnu.so /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/../boutpp/libboutpp.cpython-311-x86_64-linux-gnu.so
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build && /usr/bin/cmake -E copy /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tools/pylib/_boutpp_build/boutpp.py /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tools/pylib/_boutpp_build/../boutpp/__init__.py
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
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make  -f CMakeFiles/build-check-integrated-tests.dir/build.make CMakeFiles/build-check-integrated-tests.dir/depend
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/CMakeFiles/build-check-integrated-tests.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
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/usr/bin/ld: /tmp/ccNfQWtT.ltrans106.ltrans.o: in function `testing::internal::TestFactoryImpl<OptionsNetCDFTest_WriteMultipleTimeDimensions_Test>::CreateTest()':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/sys/test_options_netcdf.cxx:28: warning: the use of `tmpnam' is dangerous, better use `mkstemp'
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make  -f CMakeFiles/build-check.dir/build.make CMakeFiles/build-check.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
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make[2]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
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make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
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CMakeFiles/bout++.dir/src/sys/options.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_ini.cxx.o CMakeFiles/bout++.dir/src/sys/options/options_netcdf.cxx.o CMakeFiles/bout++.dir/src/sys/optionsreader.cxx.o CMakeFiles/bout++.dir/src/sys/output.cxx.o CMakeFiles/bout++.dir/src/sys/petsclib.cxx.o CMakeFiles/bout++.dir/src/sys/range.cxx.o CMakeFiles/bout++.dir/src/sys/slepclib.cxx.o CMakeFiles/bout++.dir/src/sys/timer.cxx.o CMakeFiles/bout++.dir/src/sys/type_name.cxx.o CMakeFiles/bout++.dir/src/sys/utils.cxx.o "CMakeFiles/bout++.dir/bout++-time.cxx.o"  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib: /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/libfmt.so.10.0.0 lib/libpvode.so.1.0.0 lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl -ldl /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libnetcdf.so /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplace/impls/spt/spt.cxx: In member function '__ct_base ':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/src/invert/laplace/impls/spt/spt.cxx:68:37: warning: argument 1 value '18446744073709551615' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   68 |   alldata = new SPT_data[ye - ys + 1];
      |                                     ^
/usr/include/c++/13/new:128:26: note: in a call to allocation function 'operator new []' declared here
  128 | _GLIBCXX_NODISCARD void* operator new[](std::size_t) _GLIBCXX_THROW (std::bad_alloc)
      |                          ^
/usr/bin/cmake -E cmake_symlink_library lib/libbout++.so.5.0.0 lib/libbout++.so.5.0.0 lib/libbout++.so
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make  -f tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/build.make tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/depend
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/MMS/wave-1d-y /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/MMS/wave-1d-y /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/MMS/wave-1d-y/CMakeFiles/MMS-wave-1d-y.dir/DependInfo.cmake "--color="
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cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/MMS/wave-1d-y && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-wave-1d-y.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/MMS-wave-1d-y.dir/link.d "CMakeFiles/MMS-wave-1d-y.dir/wave.cxx.o" -o wave  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
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/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/MMS-advection.dir/link.d "CMakeFiles/MMS-advection.dir/advection.cxx.o" -o advection  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
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[ 42%] Linking CXX executable cyto
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/MMS/diffusion && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-diffusion.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/MMS-diffusion.dir/link.d "CMakeFiles/MMS-diffusion.dir/diffusion.cxx.o" -o cyto  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 42%] Built target MMS-diffusion
make  -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/MMS/wave-1d /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build.make tests/MMS/wave-1d/CMakeFiles/MMS-wave-1d.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 42%] Linking CXX executable wave
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/MMS/wave-1d && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMS-wave-1d.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/MMS-wave-1d.dir/link.d "CMakeFiles/MMS-wave-1d.dir/wave.cxx.o" -o wave  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../lib/libbout++.so.5.0.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../../lib/libpvode.so.1.0.0 ../../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 44%] Built target MMS-wave-1d
make  -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/CMakeFiles/build-check-mms-tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f CMakeFiles/build-check-mms-tests.dir/build.make CMakeFiles/build-check-mms-tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make[3]: Nothing to be done for 'CMakeFiles/build-check-mms-tests.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
[ 44%] Built target build-check-mms-tests
make  -f CMakeFiles/check-mms-tests.dir/build.make CMakeFiles/check-mms-tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/CMakeFiles/check-mms-tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f CMakeFiles/check-mms-tests.dir/build.make CMakeFiles/check-mms-tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
ctest -R MMS- --output-on-failure
Test project /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi
    Start 52: MMS-diffusion
1/7 Test #52: MMS-diffusion ....................   Passed   65.51 sec
    Start 53: MMS-wave-1d
2/7 Test #53: MMS-wave-1d ......................   Passed   66.56 sec
    Start 54: MMS-wave-1d-y
3/7 Test #54: MMS-wave-1d-y ....................   Passed   64.33 sec
    Start 55: MMS-bracket
4/7 Test #55: MMS-bracket ......................   Passed    1.69 sec
    Start 56: MMS-derivatives3
5/7 Test #56: MMS-derivatives3 .................   Passed    2.12 sec
    Start 57: MMS-shiftedmetricinterp
6/7 Test #57: MMS-shiftedmetricinterp ..........   Passed    5.12 sec
    Start 58: MMS-upwinding3
7/7 Test #58: MMS-upwinding3 ...................   Passed    2.51 sec
100% tests passed, 0 tests failed out of 7
Total Test time (real) = 207.85 sec
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
Built target check-mms-tests
make  -f tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build.make tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/externalpackages/googletest/googletest /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build.make tests/unit/externalpackages/googletest/googletest/CMakeFiles/gtest.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
Built target gtest
make  -f tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build.make tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googlemock /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/externalpackages/googletest/googlemock /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build.make tests/unit/externalpackages/googletest/googlemock/CMakeFiles/gmock.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
Linking CXX shared library ../../../../../lib/libgmock.so
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/externalpackages/googletest/googlemock && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,--dependency-file,CMakeFiles/gmock.dir/link.d -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libgmock.so.1.10.0 -o ../../../../../lib/libgmock.so.1.10.0 "CMakeFiles/gmock.dir/src/gmock-all.cc.o"  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../../../../lib/libgtest.so.1.10.0 
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/externalpackages/googletest/googlemock && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib/libgmock.so.1.10.0 ../../../../../lib/libgmock.so.1.10.0 ../../../../../lib/libgmock.so
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
Built target gmock
make  -f tests/unit/CMakeFiles/serial_tests.dir/build.make tests/unit/CMakeFiles/serial_tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit/CMakeFiles/serial_tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f tests/unit/CMakeFiles/serial_tests.dir/build.make tests/unit/CMakeFiles/serial_tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
Linking CXX executable serial_tests
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/tests/unit && /usr/bin/cmake -E cmake_link_script CMakeFiles/serial_tests.dir/link.txt --verbose=1
/usr/lib64/openmpi/bin/mpicxx -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64   -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O2 -g -DNDEBUG -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -Wl,--dependency-file,CMakeFiles/serial_tests.dir/link.d CMakeFiles/serial_tests.dir/bout_test_main.cxx.o CMakeFiles/serial_tests.dir/field/test_field.cxx.o CMakeFiles/serial_tests.dir/field/test_field2d.cxx.o CMakeFiles/serial_tests.dir/field/test_field3d.cxx.o CMakeFiles/serial_tests.dir/field/test_field_factory.cxx.o CMakeFiles/serial_tests.dir/field/test_fieldgroup.cxx.o CMakeFiles/serial_tests.dir/field/test_fieldperp.cxx.o CMakeFiles/serial_tests.dir/field/test_initialprofiles.cxx.o CMakeFiles/serial_tests.dir/field/test_vector2d.cxx.o CMakeFiles/serial_tests.dir/field/test_vector3d.cxx.o CMakeFiles/serial_tests.dir/field/test_where.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_array.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_assert.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_bout_enum_class.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_deriv_store.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_generic_factory.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_macro_for_each.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_monitor.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_indexer.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_matrix.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_setters.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_petsc_vector.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_region.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_single_index_ops.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_stencil.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_template_combinations.cxx.o CMakeFiles/serial_tests.dir/include/bout/test_traits.cxx.o CMakeFiles/serial_tests.dir/include/test_cyclic_reduction.cxx.o CMakeFiles/serial_tests.dir/include/test_derivs.cxx.o CMakeFiles/serial_tests.dir/include/test_mask.cxx.o CMakeFiles/serial_tests.dir/invert/test_fft.cxx.o CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_petsc3damg.cxx.o CMakeFiles/serial_tests.dir/invert/laplace/test_laplace_cyclic.cxx.o CMakeFiles/serial_tests.dir/mesh/data/test_gridfromoptions.cxx.o CMakeFiles/serial_tests.dir/mesh/parallel/test_shiftedmetric.cxx.o CMakeFiles/serial_tests.dir/mesh/test_boundary_factory.cxx.o CMakeFiles/serial_tests.dir/mesh/test_boutmesh.cxx.o CMakeFiles/serial_tests.dir/mesh/test_coordinates.cxx.o CMakeFiles/serial_tests.dir/mesh/test_coordinates_accessor.cxx.o CMakeFiles/serial_tests.dir/mesh/test_interpolation.cxx.o CMakeFiles/serial_tests.dir/mesh/test_mesh.cxx.o CMakeFiles/serial_tests.dir/mesh/test_paralleltransform.cxx.o CMakeFiles/serial_tests.dir/solver/test_fakesolver.cxx.o CMakeFiles/serial_tests.dir/solver/test_solver.cxx.o CMakeFiles/serial_tests.dir/solver/test_solverfactory.cxx.o CMakeFiles/serial_tests.dir/sys/test_boutexception.cxx.o CMakeFiles/serial_tests.dir/sys/test_expressionparser.cxx.o CMakeFiles/serial_tests.dir/sys/test_msg_stack.cxx.o CMakeFiles/serial_tests.dir/sys/test_options.cxx.o CMakeFiles/serial_tests.dir/sys/test_options_fields.cxx.o CMakeFiles/serial_tests.dir/sys/test_options_netcdf.cxx.o CMakeFiles/serial_tests.dir/sys/test_optionsreader.cxx.o CMakeFiles/serial_tests.dir/sys/test_output.cxx.o CMakeFiles/serial_tests.dir/sys/test_range.cxx.o CMakeFiles/serial_tests.dir/sys/test_timer.cxx.o CMakeFiles/serial_tests.dir/sys/test_type_name.cxx.o CMakeFiles/serial_tests.dir/sys/test_utils.cxx.o CMakeFiles/serial_tests.dir/sys/test_variant.cxx.o CMakeFiles/serial_tests.dir/sys/test_raja.cxx.o CMakeFiles/serial_tests.dir/test_extras.cxx.o CMakeFiles/serial_tests.dir/src/test_bout++.cxx.o -o serial_tests  -Wl,-rpath,/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/lib ../../lib/libgmock.so.1.10.0 ../../lib/libbout++.so.5.0.0 ../../lib/libgtest.so.1.10.0 /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libpetsc.so /usr/lib64/openmpi/lib/libhdf5.so /usr/lib64/libfmt.so.10.0.0 ../../lib/libpvode.so.1.0.0 ../../lib/libpvpre.so.1.0.0 /usr/lib64/libnetcdf_c++4.so /usr/lib64/libnetcdf.so /usr/lib64/libfftw3.so /usr/lib64/libflexiblas.so -lm -ldl /usr/lib64/openmpi/lib/libsundials_nvecparallel.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_cvode.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_ida.so.6.5.1 /usr/lib64/openmpi/lib/libsundials_arkode.so.5.5.1 -ldl 
/usr/bin/ld: /tmp/ccjC6LuR.ltrans106.ltrans.o: in function `testing::internal::TestFactoryImpl<OptionsNetCDFTest_WriteMultipleTimeDimensions_Test>::CreateTest()':
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/sys/test_options_netcdf.cxx:28: warning: the use of `tmpnam' is dangerous, better use `mkstemp'
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
Built target serial_tests
make  -f CMakeFiles/build-check-unit-tests.dir/build.make CMakeFiles/build-check-unit-tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/CMakeFiles/build-check-unit-tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f CMakeFiles/build-check-unit-tests.dir/build.make CMakeFiles/build-check-unit-tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make[3]: Nothing to be done for 'CMakeFiles/build-check-unit-tests.dir/build'.
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
Built target build-check-unit-tests
make  -f CMakeFiles/check-unit-tests.dir/build.make CMakeFiles/check-unit-tests.dir/depend
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
cd /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi/CMakeFiles/check-unit-tests.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make  -f CMakeFiles/check-unit-tests.dir/build.make CMakeFiles/check-unit-tests.dir/build
make[3]: Entering directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
ctest -R serial_tests --output-on-failure
Test project /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi
    Start 1: serial_tests
1/1 Test #1: serial_tests .....................***Failed    4.95 sec
[WARNING] /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/src/gtest-death-test.cc:1121:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test detected 3 threads. See https://github.com/google/googletest/blob/master/googletest/docs/advanced.md#death-tests-and-threads for more explanation and suggested solutions, especially if this is the last message you see before your test times out.
Running main() from bout_test_main.cxx
[WARNING] /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/src/gtest-death-test.cc:1121:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test detected 3 threads. See https://github.com/google/googletest/blob/master/googletest/docs/advanced.md#death-tests-and-threads for more explanation and suggested solutions, especially if this is the last message you see before your test times out.
[WARNING] /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/externalpackages/googletest/googletest/src/gtest-death-test.cc:1121:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test detected 3 threads. See https://github.com/google/googletest/blob/master/googletest/docs/advanced.md#death-tests-and-threads for more explanation and suggested solutions, especially if this is the last message you see before your test times out.
Timer::resetTime
Timer name         | Total time (s) | % of top | Hits | Mean time/hit (s)
-------------------|----------------|----------|------|------------------
one                | 0.003487483    | 1.00     | 1    | 0.003487483      
two                | 0.002161121    | 0.62     | 2    | 0.0010805605     
18 characters long | 2.91e-07       | 0.00     | 1    | 2.91e-07         
Calculating differential geometry terms
	Option ddx:first = C2 ()
	Option ddx:upwind = C2 ()
	Option ddy:first = C2 ()
	Option ddy:upwind = C2 ()
	Option ddz:first = C2 ()
	Option ddz:upwind = C2 ()
	Option ddy:first = C2 ()
	Option ddy:upwind = C2 ()
	Option ddx:first = C2 ()
	Option ddx:upwind = C2 ()
	Option ddy:first = C2 ()
	Option ddy:upwind = C2 ()
	Option ddz:first = C2 ()
	Option ddz:upwind = C2 ()
	Option ddy:first = C2 ()
	Option ddy:upwind = C2 ()
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/field/test_field.cxx:238: Failure
Expected: getUniform(nonuniform) throws an exception of type BoutException.
  Actual: it throws fmt::v10::format_error with description "argument not found".
[  FAILED  ] FieldTest.GetUniformFalse3D (0 ms)
/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/tests/unit/field/test_field.cxx:251: Failure
Expected: getUniform(nonuniform) throws an exception of type BoutException.
  Actual: it throws fmt::v10::format_error with description "argument not found".
[  FAILED  ] FieldTest.GetUniformFalse2D (0 ms)
[==========] 2158 tests from 141 test suites ran. (3373 ms total)
[  PASSED  ] 2156 tests.
0% tests passed, 1 tests failed out of 1
Total Test time (real) =   4.96 sec
The following tests FAILED:
	  1 - serial_tests (Failed)
Errors while running CTest
make[3]: *** [CMakeFiles/check-unit-tests.dir/build.make:73: CMakeFiles/check-unit-tests] Error 8
make[3]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make[2]: *** [CMakeFiles/Makefile2:2743: CMakeFiles/check-unit-tests.dir/all] Error 2
make[2]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make[1]: *** [CMakeFiles/Makefile2:2830: CMakeFiles/check.dir/rule] Error 2
make[1]: Leaving directory '/builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/build_openmpi'
make: *** [Makefile:286: check] Error 2
++ exit 0
+ popd
~/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea
+ '[' openmpi = mpich ']'
+ . /etc/profile.d/modules.sh
++ '[' -n /bin/sh ']'
++ '[' sh = sh ']'
++ shell=sh
++ '[' -f /usr/share/Modules/init/sh ']'
++ . /usr/share/Modules/init/sh
+++ unset _mlshdbg
+++ '[' 0 = 1 ']'
+++ export 'MODULES_RUN_QUARANTINE=LD_LIBRARY_PATH LD_PRELOAD'
+++ MODULES_RUN_QUARANTINE='LD_LIBRARY_PATH LD_PRELOAD'
+++ unset _mlre _mlIFS
+++ '[' -n x ']'
+++ _mlIFS=' 	
'
+++ IFS=' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
+++ '[' LD_LIBRARY_PATH = LD_LIBRARY_PATH ']'
++++ eval 'echo ${LD_LIBRARY_PATH+x}'
+++++ echo x
+++ '[' -n x ']'
++++ eval 'echo ${LD_LIBRARY_PATH}'
+++++ echo /usr/lib64/openmpi/lib
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' '
+++ _mlrv=MODULES_RUNENV_LD_LIBRARY_PATH
++++ eval 'echo ${MODULES_RUNENV_LD_LIBRARY_PATH:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' '
+++ for _mlv in ${MODULES_RUN_QUARANTINE:-}
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
+++ '[' LD_PRELOAD = LD_PRELOAD ']'
++++ eval 'echo ${LD_PRELOAD+x}'
+++++ echo
+++ '[' -n '' ']'
+++ _mlrv=MODULES_RUNENV_LD_PRELOAD
++++ eval 'echo ${MODULES_RUNENV_LD_PRELOAD:-}'
+++++ echo
+++ _mlre='__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' '
+++ '[' -n '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' ' ']'
+++ _mlre='eval __MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\'' LD_LIBRARY_PATH='\'''\'' LD_PRELOAD='\'''\'' __MODULES_QUARANTINE_SET=1 '
++++ eval '__MODULES_QUAR_LD_LIBRARY_PATH='\''/usr/lib64/openmpi/lib'\''' 'LD_LIBRARY_PATH='\'''\''' 'LD_PRELOAD='\'''\''' __MODULES_QUARANTINE_SET=1 /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++++ __MODULES_QUAR_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib
+++++ LD_LIBRARY_PATH=
+++++ LD_PRELOAD=
+++++ __MODULES_QUARANTINE_SET=1
+++++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh autoinit
+++ _mlcode='_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
+++ _mlret=0
+++ '[' -n x ']'
+++ IFS=' 	
'
+++ unset _mlIFS
+++ unset _mlre _mlv _mlrv
+++ '[' 0 -eq 0 ']'
+++ eval '_module_raw() {
   eval "$(/usr/bin/tclsh '\''/usr/share/Modules/libexec/modulecmd.tcl'\'' sh "$@")";
   _mlstatus=$?;
   return $_mlstatus;
};
module() {
   local _mlredir=0;
   if [ -n "${MODULES_REDIRECT_OUTPUT+x}" ]; then
      if [ "$MODULES_REDIRECT_OUTPUT" = '\''0'\'' ]; then
         _mlredir=0;
      elif [ "$MODULES_REDIRECT_OUTPUT" = '\''1'\'' ]; then
         _mlredir=1;
      fi;
   fi;
   case " $@ " in
      *'\'' --no-redirect '\''*) _mlredir=0 ;;
      *'\'' --redirect '\''*) _mlredir=1 ;;
   esac;
   if [ $_mlredir -eq 0 ]; then
      _module_raw "$@";
   else
      _module_raw "$@" 2>&1;
   fi;
};
ml() { module ml "$@"; };
MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl; export MODULES_CMD;
unset __MODULES_AUTOINIT_INPROGRESS;
MODULESHOME=/usr/share/Modules; export MODULESHOME;
test 0;'
++++ MODULES_CMD=/usr/share/Modules/libexec/modulecmd.tcl
++++ export MODULES_CMD
++++ unset __MODULES_AUTOINIT_INPROGRESS
++++ MODULESHOME=/usr/share/Modules
++++ export MODULESHOME
++++ test 0
+++ '[' /bin/sh '!=' '' ']'
+++ export -f _module_raw
+++ export -f module
++++ type -t ml
+++ '[' function = function ']'
+++ export -f ml
+++ unset _mlcode _mlret
+++ '[' -n '' ']'
+ module unload mpi/openmpi-x86_64
+ local _mlredir=0
+ '[' -n '' ']'
+ case " $@ " in
+ '[' 0 -eq 0 ']'
+ _module_raw unload mpi/openmpi-x86_64
++ /usr/bin/tclsh /usr/share/Modules/libexec/modulecmd.tcl sh unload mpi/openmpi-x86_64
+ eval 'unset MPI_COMPILER;
unset LD_LIBRARY_PATH;
MANPATH=/usr/share/man:; export MANPATH;
unset MPI_INCLUDE;
unset MPI_MAN;
unset _LMFILES_;
unset LOADEDMODULES;
PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig; export PKG_CONFIG_PATH;
unset MPI_PYTHON3_SITEARCH;
unset MPI_HOME;
unset MPI_FORTRAN_MOD_DIR;
unset __MODULES_LMALTNAME;
unset __MODULES_LMCONFLICT;
__MODULES_SHARE_MANPATH=:1; export __MODULES_SHARE_MANPATH;
unset MPI_SUFFIX;
unset MPI_SYSCONFIG;
__MODULES_SHARE_PKG_CONFIG_PATH=:1; export __MODULES_SHARE_PKG_CONFIG_PATH;
unset MPI_LIB;
PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin; export PATH;
unset MPI_BIN;
test 0;'
++ unset MPI_COMPILER
++ unset LD_LIBRARY_PATH
++ MANPATH=/usr/share/man:
++ export MANPATH
++ unset MPI_INCLUDE
++ unset MPI_MAN
++ unset _LMFILES_
++ unset LOADEDMODULES
++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig
++ export PKG_CONFIG_PATH
++ unset MPI_PYTHON3_SITEARCH
++ unset MPI_HOME
++ unset MPI_FORTRAN_MOD_DIR
++ unset __MODULES_LMALTNAME
++ unset __MODULES_LMCONFLICT
++ __MODULES_SHARE_MANPATH=:1
++ export __MODULES_SHARE_MANPATH
++ unset MPI_SUFFIX
++ unset MPI_SYSCONFIG
++ __MODULES_SHARE_PKG_CONFIG_PATH=:1
++ export __MODULES_SHARE_PKG_CONFIG_PATH
++ unset MPI_LIB
++ PATH=/builddir/.local/bin:/builddir/bin:/usr/share/Modules/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin
++ export PATH
++ unset MPI_BIN
++ test 0
+ _mlstatus=0
+ return 0
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: bout++-mpich-5.0.0-6.fc39.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.gmKZjz
+ umask 022
+ cd /builddir/build/BUILD
+ cd BOUT++-v5.0.0.dev10626+gd935fa1ea
+ DOCDIR=/builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++-mpich
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++-mpich
+ cp -pr /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/README.md /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++-mpich
+ cp -pr /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/CITATION.bib /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++-mpich
+ cp -pr /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/CITATION.cff /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++-mpich
+ cp -pr /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/CHANGELOG.md /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++-mpich
+ cp -pr /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/CONTRIBUTING.md /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++-mpich
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.W0Yvj4
+ umask 022
+ cd /builddir/build/BUILD
+ cd BOUT++-v5.0.0.dev10626+gd935fa1ea
+ LICENSEDIR=/builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/licenses/bout++-mpich
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/licenses/bout++-mpich
+ cp -pr /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/LICENSE /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/licenses/bout++-mpich
+ cp -pr /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/LICENSE.GPL /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/licenses/bout++-mpich
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bout++-mpich = 5.0.0-6.fc39 bout++-mpich(x86-64) = 5.0.0-6.fc39 bundled(libpvode) libbout++.so.5.0.0()(64bit)(mpich-x86_64) libpvode.so.1.0.0()(64bit)(mpich-x86_64) libpvpre.so.1.0.0()(64bit)(mpich-x86_64)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/bash /usr/bin/python3 /usr/bin/sh glibc >= 2.37.9000-14 libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libfftw3.so.3()(64bit) libflexiblas.so.3()(64bit) libfmt.so.10()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libmpi.so.12()(64bit)(mpich-x86_64) libnetcdf.so.19()(64bit) libnetcdf_c++4.so.1()(64bit) libpetsc.so.3.18()(64bit)(mpich-x86_64) libpvode.so.1.0.0()(64bit)(mpich-x86_64) libpvpre.so.1.0.0()(64bit)(mpich-x86_64) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libsundials_arkode.so.5()(64bit)(mpich-x86_64) libsundials_cvode.so.6()(64bit)(mpich-x86_64) libsundials_ida.so.6()(64bit)(mpich-x86_64) libsundials_nvecparallel.so.6()(64bit)(mpich-x86_64) rtld(GNU_HASH)
Recommends: environment-modules python3-boutdata python3-boututils python3-xbout
Processing files: bout++-mpich-devel-5.0.0-6.fc39.x86_64
Provides: bout++-mpich-devel = 5.0.0-6.fc39 bout++-mpich-devel(x86-64) = 5.0.0-6.fc39
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: fftw-devel flexiblas-devel gcc-c++ gettext-devel hdf5-devel hdf5-mpich-devel make mpark-variant-devel mpich-devel netcdf-cxx4-devel netcdf-devel petsc-mpich-devel sundials-devel sundials-mpich-devel zlib-devel
Processing files: python3-bout++-mpich-5.0.0-6.fc39.x86_64
Provides: libboutpp.cpython-311-x86_64-linux-gnu.so()(64bit)(mpich-x86_64) python-bout++-mpich = 5.0.0-6.fc39 python3-bout++-mpich = 5.0.0-6.fc39 python3-bout++-mpich(x86-64) = 5.0.0-6.fc39 python3.11-bout++-mpich = 5.0.0-6.fc39
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libbout++.so.5.0.0()(64bit)(mpich-x86_64) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.4)(64bit) libfmt.so.10()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.11 rtld(GNU_HASH)
Recommends: python3-xbout
Processing files: bout++-openmpi-5.0.0-6.fc39.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.8JDbHR
+ umask 022
+ cd /builddir/build/BUILD
+ cd BOUT++-v5.0.0.dev10626+gd935fa1ea
+ DOCDIR=/builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++-openmpi
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++-openmpi
+ cp -pr /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/README.md /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++-openmpi
+ cp -pr /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/CITATION.bib /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++-openmpi
+ cp -pr /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/CITATION.cff /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++-openmpi
+ cp -pr /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/CHANGELOG.md /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++-openmpi
+ cp -pr /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/CONTRIBUTING.md /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/bout++-openmpi
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.QLSVqq
+ umask 022
+ cd /builddir/build/BUILD
+ cd BOUT++-v5.0.0.dev10626+gd935fa1ea
+ LICENSEDIR=/builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/licenses/bout++-openmpi
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/licenses/bout++-openmpi
+ cp -pr /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/LICENSE /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/licenses/bout++-openmpi
+ cp -pr /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/LICENSE.GPL /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/licenses/bout++-openmpi
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bout++-openmpi = 5.0.0-6.fc39 bout++-openmpi(x86-64) = 5.0.0-6.fc39 bundled(libpvode) libbout++.so.5.0.0()(64bit)(openmpi-x86_64) libpvode.so.1.0.0()(64bit)(openmpi-x86_64) libpvpre.so.1.0.0()(64bit)(openmpi-x86_64)
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/bash /usr/bin/python3 /usr/bin/sh glibc >= 2.37.9000-14 libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libfftw3.so.3()(64bit) libflexiblas.so.3()(64bit) libfmt.so.10()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libmpi.so.40()(64bit)(openmpi-x86_64) libmpi_cxx.so.40()(64bit)(openmpi-x86_64) libnetcdf.so.19()(64bit) libnetcdf_c++4.so.1()(64bit) libpetsc.so.3.18()(64bit)(openmpi-x86_64) libpvode.so.1.0.0()(64bit)(openmpi-x86_64) libpvpre.so.1.0.0()(64bit)(openmpi-x86_64) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.19)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libsundials_arkode.so.5()(64bit)(openmpi-x86_64) libsundials_cvode.so.6()(64bit)(openmpi-x86_64) libsundials_ida.so.6()(64bit)(openmpi-x86_64) libsundials_nvecparallel.so.6()(64bit)(openmpi-x86_64) rtld(GNU_HASH)
Recommends: environment-modules python3-boutdata python3-boututils python3-xbout
Processing files: bout++-openmpi-devel-5.0.0-6.fc39.x86_64
Provides: bout++-openmpi-devel = 5.0.0-6.fc39 bout++-openmpi-devel(x86-64) = 5.0.0-6.fc39
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: fftw-devel flexiblas-devel gcc-c++ gettext-devel hdf5-devel hdf5-openmpi-devel make mpark-variant-devel netcdf-cxx4-devel netcdf-devel openmpi-devel petsc-openmpi-devel sundials-devel sundials-openmpi-devel zlib-devel
Processing files: python3-bout++-openmpi-5.0.0-6.fc39.x86_64
Provides: libboutpp.cpython-311-x86_64-linux-gnu.so()(64bit)(openmpi-x86_64) python-bout++-openmpi = 5.0.0-6.fc39 python3-bout++-openmpi = 5.0.0-6.fc39 python3-bout++-openmpi(x86-64) = 5.0.0-6.fc39 python3.11-bout++-openmpi = 5.0.0-6.fc39
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libbout++.so.5.0.0()(64bit)(openmpi-x86_64) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libfmt.so.10()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libmpi.so.40()(64bit)(openmpi-x86_64) libmpi_cxx.so.40()(64bit)(openmpi-x86_64) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.22)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.11 rtld(GNU_HASH)
Recommends: python3-xbout
Processing files: bout++-common-5.0.0-6.fc39.x86_64
Provides: bout++-common = 5.0.0-6.fc39 bout++-common(x86-64) = 5.0.0-6.fc39
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: python3-bout++-5.0.0-6.fc39.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.lHe5l6
+ umask 022
+ cd /builddir/build/BUILD
+ cd BOUT++-v5.0.0.dev10626+gd935fa1ea
+ DOCDIR=/builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/python3-bout++
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/python3-bout++
+ cp -pr /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/README.md /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/python3-bout++
+ cp -pr /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/CITATION.bib /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/python3-bout++
+ cp -pr /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/CITATION.cff /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/python3-bout++
+ cp -pr /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/CHANGELOG.md /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/python3-bout++
+ cp -pr /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/CONTRIBUTING.md /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/doc/python3-bout++
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.wZ3TGn
+ umask 022
+ cd /builddir/build/BUILD
+ cd BOUT++-v5.0.0.dev10626+gd935fa1ea
+ LICENSEDIR=/builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/licenses/python3-bout++
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/licenses/python3-bout++
+ cp -pr /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/LICENSE /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/licenses/python3-bout++
+ cp -pr /builddir/build/BUILD/BOUT++-v5.0.0.dev10626+gd935fa1ea/LICENSE.GPL /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64/usr/share/licenses/python3-bout++
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: python-bout++ = 5.0.0-6.fc39 python3-bout++ = 5.0.0-6.fc39 python3.11-bout++ = 5.0.0-6.fc39
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: python3-boutdata python3-boututils python3-matplotlib python3-scipy
Processing files: bout++-doc-5.0.0-6.fc39.noarch
Provides: bout++-doc = 5.0.0-6.fc39
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: bout++-debugsource-5.0.0-6.fc39.x86_64
Provides: bout++-debugsource = 5.0.0-6.fc39 bout++-debugsource(x86-64) = 5.0.0-6.fc39
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: bout++-debuginfo-5.0.0-6.fc39.x86_64
Provides: bout++-debuginfo = 5.0.0-6.fc39 bout++-debuginfo(x86-64) = 5.0.0-6.fc39
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: bout++-debugsource(x86-64) = 5.0.0-6.fc39
Processing files: bout++-mpich-debuginfo-5.0.0-6.fc39.x86_64
Provides: bout++-mpich-debuginfo = 5.0.0-6.fc39 bout++-mpich-debuginfo(x86-64) = 5.0.0-6.fc39 debuginfo(build-id) = 64071cac58c386275d2cf9a365243767af7bd277 debuginfo(build-id) = 772daafdf0333f1d85ad72c4626bf9cb8369e8e6 debuginfo(build-id) = eaca56a662ba1262d3c43d8ead0d4456a86870be
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: bout++-debugsource(x86-64) = 5.0.0-6.fc39
Processing files: python3-bout++-mpich-debuginfo-5.0.0-6.fc39.x86_64
Provides: debuginfo(build-id) = fead7d7e38b46dccd25dc5e221242827404715a2 python-bout++-mpich-debuginfo = 5.0.0-6.fc39 python3-bout++-mpich-debuginfo = 5.0.0-6.fc39 python3-bout++-mpich-debuginfo(x86-64) = 5.0.0-6.fc39 python3.11-bout++-mpich-debuginfo = 5.0.0-6.fc39
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: bout++-debugsource(x86-64) = 5.0.0-6.fc39
Processing files: bout++-openmpi-debuginfo-5.0.0-6.fc39.x86_64
Provides: bout++-openmpi-debuginfo = 5.0.0-6.fc39 bout++-openmpi-debuginfo(x86-64) = 5.0.0-6.fc39 debuginfo(build-id) = 15ba0276ca6312c36d20a03c1c19222ccf9bb149 debuginfo(build-id) = cc206bbbf8d65677132bae76863161b156451b50 debuginfo(build-id) = fad029a7350fa2c86e98c86eb154797217d17ec6
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: bout++-debugsource(x86-64) = 5.0.0-6.fc39
Processing files: python3-bout++-openmpi-debuginfo-5.0.0-6.fc39.x86_64
Provides: debuginfo(build-id) = 38bbf682a7f072ed7ac3bada3676c681b7c9f29b python-bout++-openmpi-debuginfo = 5.0.0-6.fc39 python3-bout++-openmpi-debuginfo = 5.0.0-6.fc39 python3-bout++-openmpi-debuginfo(x86-64) = 5.0.0-6.fc39 python3.11-bout++-openmpi-debuginfo = 5.0.0-6.fc39
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: bout++-debugsource(x86-64) = 5.0.0-6.fc39
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64
Wrote: /builddir/build/RPMS/bout++-mpich-debuginfo-5.0.0-6.fc39.x86_64.rpm
Wrote: /builddir/build/RPMS/bout++-openmpi-debuginfo-5.0.0-6.fc39.x86_64.rpm
Wrote: /builddir/build/RPMS/bout++-debugsource-5.0.0-6.fc39.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-bout++-openmpi-debuginfo-5.0.0-6.fc39.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-bout++-mpich-debuginfo-5.0.0-6.fc39.x86_64.rpm
Wrote: /builddir/build/RPMS/bout++-doc-5.0.0-6.fc39.noarch.rpm
Wrote: /builddir/build/RPMS/bout++-debuginfo-5.0.0-6.fc39.x86_64.rpm
Wrote: /builddir/build/RPMS/bout++-openmpi-5.0.0-6.fc39.x86_64.rpm
Wrote: /builddir/build/RPMS/bout++-mpich-5.0.0-6.fc39.x86_64.rpm
Wrote: /builddir/build/RPMS/bout++-openmpi-devel-5.0.0-6.fc39.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-bout++-openmpi-5.0.0-6.fc39.x86_64.rpm
Wrote: /builddir/build/RPMS/bout++-mpich-devel-5.0.0-6.fc39.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-bout++-5.0.0-6.fc39.noarch.rpm
Wrote: /builddir/build/RPMS/bout++-common-5.0.0-6.fc39.x86_64.rpm
Wrote: /builddir/build/RPMS/python3-bout++-mpich-5.0.0-6.fc39.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.qlQsZb
+ umask 022
+ cd /builddir/build/BUILD
+ cd BOUT++-v5.0.0.dev10626+gd935fa1ea
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/bout++-5.0.0-6.fc39.x86_64
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.wXCPSc
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf BOUT++-v5.0.0.dev10626+gd935fa1ea BOUT++-v5.0.0.dev10626+gd935fa1ea.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Child return code was: 0