Warning: Permanently added '3.85.52.124' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6186044-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 0.68 PID: 6899 Logging PID: 6900 Task: {'appstream': False, 'background': True, 'build_id': 6186044, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'ef647f6010d5529ea98df4f09a9964ad7c44bc90', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/torsava/automatic-obsoletes/avogadro2-libs', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'avogadro2-libs', 'package_version': '1.97.0-5', 'project_dirname': 'automatic-obsoletes', 'project_name': 'automatic-obsoletes', 'project_owner': 'torsava', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/torsava/automatic-obsoletes/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository'}], 'sandbox': 'torsava/automatic-obsoletes--https://src.fedoraproject.org/user/releng', 'source_json': {}, 'source_type': None, 'submitter': 'https://src.fedoraproject.org/user/releng', 'tags': [], 'task_id': '6186044-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/torsava/automatic-obsoletes/avogadro2-libs /var/lib/copr-rpmbuild/workspace/workdir-rrqd87mk/avogadro2-libs --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/torsava/automatic-obsoletes/avogadro2-libs', '/var/lib/copr-rpmbuild/workspace/workdir-rrqd87mk/avogadro2-libs', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-rrqd87mk/avogadro2-libs'... Running: git checkout ef647f6010d5529ea98df4f09a9964ad7c44bc90 -- cmd: ['git', 'checkout', 'ef647f6010d5529ea98df4f09a9964ad7c44bc90', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-rrqd87mk/avogadro2-libs rc: 0 stdout: stderr: Note: switching to 'ef647f6010d5529ea98df4f09a9964ad7c44bc90'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at ef647f6 automatic import of avogadro2-libs Running: copr-distgit-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-rrqd87mk/avogadro2-libs rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading avogadro2-libs-crystals-1.0.1.tar.gz INFO: Calling: curl -H Pragma: -o avogadro2-libs-crystals-1.0.1.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/torsava/automatic-obsoletes/avogadro2-libs/avogadro2-libs-crystals-1.0.1.tar.gz/md5/b05b526928b89fd27a5784b24c419613/avogadro2-libs-crystals-1.0.1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 148k 100 148k 0 0 2278k 0 --:--:-- --:--:-- --:--:-- 2316k INFO: Reading stdout from command: md5sum avogadro2-libs-crystals-1.0.1.tar.gz INFO: Downloading avogadro2-libs-molecules-master.zip INFO: Calling: curl -H Pragma: -o avogadro2-libs-molecules-master.zip --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/torsava/automatic-obsoletes/avogadro2-libs/avogadro2-libs-molecules-master.zip/md5/c109a16d04a775839f87de1149af3ef1/avogadro2-libs-molecules-master.zip % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 453k 100 453k 0 0 14.9M 0 --:--:-- --:--:-- --:--:-- 15.2M INFO: Reading stdout from command: md5sum avogadro2-libs-molecules-master.zip INFO: Downloading avogadrolibs-1.97.0.tar.gz INFO: Calling: curl -H Pragma: -o avogadrolibs-1.97.0.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/torsava/automatic-obsoletes/avogadro2-libs/avogadrolibs-1.97.0.tar.gz/md5/a7cc488fb0ab65516117304df62fb2e9/avogadrolibs-1.97.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 10.9M 100 10.9M 0 0 55.8M 0 --:--:-- --:--:-- --:--:-- 56.0M INFO: Reading stdout from command: md5sum avogadrolibs-1.97.0.tar.gz INFO: Downloading avogenerators-1.97.0.tar.gz INFO: Calling: curl -H Pragma: -o avogenerators-1.97.0.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/torsava/automatic-obsoletes/avogadro2-libs/avogenerators-1.97.0.tar.gz/md5/d115ab0f5f4dbf10d2ba2d1191c80a59/avogenerators-1.97.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 15677 100 15677 0 0 588k 0 --:--:-- --:--:-- --:--:-- 612k INFO: Reading stdout from command: md5sum avogenerators-1.97.0.tar.gz Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-rrqd87mk/avogadro2-libs/avogadro2-libs.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-rrqd87mk/avogadro2-libs --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1689776071.383479 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 4.1 starting (python version = 3.11.3, NVR = mock-4.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-rrqd87mk/avogadro2-libs/avogadro2-libs.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1689776071.383479/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (fallback) Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 130 MB/s | 14 MB 00:00 fedora 43 MB/s | 72 MB 00:01 Last metadata expiration check: 0:00:02 ago on Wed Jul 19 14:14:36 2023. Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: dnf-plugins-core noarch 4.4.1-4.fc39 fedora 38 k python3-dnf noarch 4.16.1-3.fc39 fedora 586 k Installing dependencies: alternatives x86_64 1.24-1.fc39 fedora 39 k audit-libs x86_64 3.1.1-4.fc39 copr_base 117 k basesystem noarch 11-17.fc39 fedora 7.0 k bash x86_64 5.2.15-3.fc38 fedora 1.8 M bzip2-libs x86_64 1.0.8-13.fc38 fedora 41 k ca-certificates noarch 2023.2.60-2.fc38 fedora 845 k coreutils x86_64 9.3-1.fc39 fedora 1.1 M coreutils-common x86_64 9.3-1.fc39 fedora 2.1 M crypto-policies noarch 20230614-1.git5f3458e.fc39 fedora 94 k curl x86_64 8.1.2-1.fc39 fedora 345 k cyrus-sasl-lib x86_64 2.1.28-10.fc39 fedora 792 k dbus-libs x86_64 1:1.14.8-1.fc39 fedora 156 k dnf-data noarch 4.16.1-3.fc39 fedora 38 k elfutils-default-yama-scope noarch 0.189-3.fc39 fedora 13 k elfutils-libelf x86_64 0.189-3.fc39 fedora 195 k elfutils-libs x86_64 0.189-3.fc39 fedora 258 k expat x86_64 2.5.0-2.fc38 fedora 110 k fedora-gpg-keys noarch 39-0.3 fedora 127 k fedora-release noarch 39-0.21 fedora 6.9 k fedora-release-common noarch 39-0.21 fedora 17 k fedora-release-identity-basic noarch 39-0.21 fedora 7.6 k fedora-repos noarch 39-0.3 fedora 8.8 k fedora-repos-rawhide noarch 39-0.3 fedora 8.4 k file-libs x86_64 5.44-4.fc39 fedora 729 k filesystem x86_64 3.18-4.fc39 fedora 1.1 M findutils x86_64 1:4.9.0-4.fc39 fedora 491 k fmt x86_64 10.0.0-2.fc39 fedora 127 k gawk x86_64 5.2.2-1.fc39 fedora 1.1 M gdbm-libs x86_64 1:1.23-3.fc38 fedora 56 k glib2 x86_64 2.77.0-3.fc39 fedora 2.8 M glibc x86_64 2.37.9000-17.fc39 fedora 2.2 M glibc-common x86_64 2.37.9000-17.fc39 fedora 346 k glibc-minimal-langpack x86_64 2.37.9000-17.fc39 fedora 64 k gmp x86_64 1:6.2.1-4.fc38 fedora 313 k gnupg2 x86_64 2.4.3-1.fc39 fedora 2.6 M gnutls x86_64 3.8.0-6.fc39 fedora 1.1 M gpgme x86_64 1.20.0-4.fc39 fedora 210 k grep x86_64 3.11-1.fc39 fedora 298 k ima-evm-utils x86_64 1.5-1.fc39 fedora 63 k json-c x86_64 0.16-4.fc38 fedora 41 k keyutils-libs x86_64 1.6.1-6.fc38 fedora 31 k krb5-libs x86_64 1.21-1.fc39 fedora 765 k libacl x86_64 2.3.1-7.fc39 fedora 23 k libarchive x86_64 3.6.1-5.fc39 fedora 400 k libassuan x86_64 2.5.6-1.fc39 fedora 67 k libattr x86_64 2.5.1-7.fc39 fedora 18 k libb2 x86_64 0.98.1-8.fc38 fedora 25 k libblkid x86_64 2.39.1-2.fc39 copr_base 117 k libbrotli x86_64 1.0.9-12.fc39 fedora 317 k libcap x86_64 2.48-6.fc38 fedora 67 k libcap-ng x86_64 0.8.3-6.fc39 fedora 32 k libcom_err x86_64 1.47.0-1.fc39 fedora 26 k libcomps x86_64 0.1.19-2.fc39 fedora 77 k libcurl x86_64 8.1.2-1.fc39 fedora 323 k libdnf x86_64 0.70.1-4.fc39 fedora 668 k libdnf5 x86_64 5.1.0-1.fc39 fedora 879 k libeconf x86_64 0.4.0-5.fc38 fedora 27 k libevent x86_64 2.1.12-8.fc38 fedora 257 k libffi x86_64 3.4.4-3.fc39 fedora 40 k libfsverity x86_64 1.4-9.fc38 fedora 19 k libgcc x86_64 13.1.1-4.fc39 fedora 107 k libgcrypt x86_64 1.10.2-1.fc39 fedora 514 k libgomp x86_64 13.1.1-4.fc39 fedora 317 k libgpg-error x86_64 1.47-1.fc39 fedora 230 k libidn2 x86_64 2.3.4-2.fc38 fedora 160 k libksba x86_64 1.6.4-1.fc39 fedora 159 k libmodulemd x86_64 2.15.0-4.fc39 fedora 232 k libmount x86_64 2.39.1-2.fc39 copr_base 155 k libnghttp2 x86_64 1.55.1-1.fc39 fedora 75 k libnsl2 x86_64 2.0.0-5.fc38 fedora 30 k libpsl x86_64 0.21.2-3.fc39 fedora 63 k librepo x86_64 1.15.1-3.fc39 fedora 95 k libreport-filesystem noarch 2.17.11-2.fc39 copr_base 15 k libselinux x86_64 3.5-4.fc39 copr_base 87 k libsemanage x86_64 3.5-3.fc39 fedora 119 k libsepol x86_64 3.5-1.fc39 fedora 324 k libsigsegv x86_64 2.14-4.fc38 fedora 27 k libsmartcols x86_64 2.39.1-2.fc39 copr_base 68 k libsolv x86_64 0.7.24-6.fc39 fedora 425 k libssh x86_64 0.10.5-1.fc39 fedora 211 k libssh-config noarch 0.10.5-1.fc39 fedora 9.0 k libstdc++ x86_64 13.1.1-4.fc39 fedora 861 k libtasn1 x86_64 4.19.0-2.fc38 fedora 74 k libtirpc x86_64 1.3.3-1.rc1.fc39 fedora 93 k libunistring x86_64 1.1-3.fc38 fedora 545 k libunistring1.0 x86_64 1.0-1.fc38 fedora 539 k libuuid x86_64 2.39.1-2.fc39 copr_base 29 k libverto x86_64 0.3.2-5.fc38 fedora 21 k libxcrypt x86_64 4.4.36-1.fc39 fedora 119 k libxml2 x86_64 2.10.4-2.fc39 fedora 701 k libyaml x86_64 0.2.5-9.fc38 fedora 59 k libzstd x86_64 1.5.5-1.fc39 fedora 308 k lua-libs x86_64 5.4.4-9.fc39 fedora 133 k lz4-libs x86_64 1.9.4-3.fc39 fedora 67 k mpdecimal x86_64 2.5.1-6.fc38 fedora 89 k mpfr x86_64 4.2.0-2.fc39 fedora 343 k ncurses-base noarch 6.4-5.20230520.fc39 fedora 88 k ncurses-libs x86_64 6.4-5.20230520.fc39 fedora 336 k nettle x86_64 3.9.1-1.fc39 fedora 425 k npth x86_64 1.6-13.fc39 fedora 24 k openldap x86_64 2.6.4-3.fc39 fedora 254 k openssl-libs x86_64 1:3.0.8-2.fc39 fedora 2.1 M p11-kit x86_64 0.24.1-6.fc38 fedora 359 k p11-kit-trust x86_64 0.24.1-6.fc38 fedora 136 k pcre2 x86_64 10.42-1.fc38.1 fedora 234 k pcre2-syntax noarch 10.42-1.fc38.1 fedora 144 k popt x86_64 1.19-2.fc38 fedora 67 k publicsuffix-list-dafsa noarch 20230614-1.fc39 fedora 57 k python-pip-wheel noarch 23.1.2-2.fc39 fedora 1.4 M python3 x86_64 3.12.0~b4-1.fc39 fedora 26 k python3-dateutil noarch 1:2.8.2-9.fc39 fedora 355 k python3-dbus x86_64 1.3.2-3.fc39 fedora 157 k python3-distro noarch 1.8.0-5.fc39 fedora 49 k python3-dnf-plugins-core noarch 4.4.1-4.fc39 fedora 293 k python3-gpg x86_64 1.20.0-4.fc39 fedora 298 k python3-hawkey x86_64 0.70.1-4.fc39 fedora 107 k python3-libcomps x86_64 0.1.19-2.fc39 fedora 48 k python3-libdnf x86_64 0.70.1-4.fc39 fedora 829 k python3-libs x86_64 3.12.0~b4-1.fc39 fedora 9.2 M python3-rpm x86_64 4.18.91-7.fc39 fedora 67 k python3-six noarch 1.16.0-11.fc39 fedora 41 k python3-systemd x86_64 235-4.fc39 fedora 107 k readline x86_64 8.2-3.fc38 fedora 212 k rpm x86_64 4.18.91-7.fc39 copr_base 503 k rpm-build-libs x86_64 4.18.91-7.fc39 copr_base 96 k rpm-libs x86_64 4.18.91-7.fc39 copr_base 309 k rpm-sequoia x86_64 1.4.1-1.fc39 fedora 843 k rpm-sign-libs x86_64 4.18.91-7.fc39 copr_base 27 k sed x86_64 4.8-12.fc38 fedora 306 k setup noarch 2.14.3-3.fc39 fedora 152 k shadow-utils x86_64 2:4.13-7.fc39 fedora 1.3 M sqlite-libs x86_64 3.42.0-6.fc39 fedora 678 k systemd-libs x86_64 254~rc2-4.fc39 fedora 686 k tpm2-tss x86_64 4.0.1-3.fc38 fedora 675 k tzdata noarch 2023c-1.fc39 fedora 718 k xz-libs x86_64 5.4.3-1.fc39 fedora 108 k zchunk-libs x86_64 1.3.1-1.fc39 fedora 52 k zlib x86_64 1.2.13-3.fc38 fedora 95 k Transaction Summary ================================================================================ Install 140 Packages Total download size: 57 M Installed size: 201 M Downloading Packages: (1/140): audit-libs-3.1.1-4.fc39.x86_64.rpm 4.2 MB/s | 117 kB 00:00 (2/140): libreport-filesystem-2.17.11-2.fc39.no 7.7 MB/s | 15 kB 00:00 (3/140): libmount-2.39.1-2.fc39.x86_64.rpm 5.0 MB/s | 155 kB 00:00 (4/140): libblkid-2.39.1-2.fc39.x86_64.rpm 3.7 MB/s | 117 kB 00:00 (5/140): libselinux-3.5-4.fc39.x86_64.rpm 26 MB/s | 87 kB 00:00 (6/140): libuuid-2.39.1-2.fc39.x86_64.rpm 10 MB/s | 29 kB 00:00 (7/140): libsmartcols-2.39.1-2.fc39.x86_64.rpm 18 MB/s | 68 kB 00:00 (8/140): rpm-4.18.91-7.fc39.x86_64.rpm 93 MB/s | 503 kB 00:00 (9/140): rpm-build-libs-4.18.91-7.fc39.x86_64.r 17 MB/s | 96 kB 00:00 (10/140): rpm-libs-4.18.91-7.fc39.x86_64.rpm 51 MB/s | 309 kB 00:00 (11/140): rpm-sign-libs-4.18.91-7.fc39.x86_64.r 11 MB/s | 27 kB 00:00 (12/140): alternatives-1.24-1.fc39.x86_64.rpm 4.1 MB/s | 39 kB 00:00 (13/140): basesystem-11-17.fc39.noarch.rpm 706 kB/s | 7.0 kB 00:00 (14/140): bzip2-libs-1.0.8-13.fc38.x86_64.rpm 23 MB/s | 41 kB 00:00 (15/140): bash-5.2.15-3.fc38.x86_64.rpm 102 MB/s | 1.8 MB 00:00 (16/140): ca-certificates-2023.2.60-2.fc38.noar 65 MB/s | 845 kB 00:00 (17/140): crypto-policies-20230614-1.git5f3458e 23 MB/s | 94 kB 00:00 (18/140): coreutils-9.3-1.fc39.x86_64.rpm 58 MB/s | 1.1 MB 00:00 (19/140): coreutils-common-9.3-1.fc39.x86_64.rp 134 MB/s | 2.1 MB 00:00 (20/140): curl-8.1.2-1.fc39.x86_64.rpm 38 MB/s | 345 kB 00:00 (21/140): cyrus-sasl-lib-2.1.28-10.fc39.x86_64. 118 MB/s | 792 kB 00:00 (22/140): dbus-libs-1.14.8-1.fc39.x86_64.rpm 61 MB/s | 156 kB 00:00 (23/140): dnf-data-4.16.1-3.fc39.noarch.rpm 17 MB/s | 38 kB 00:00 (24/140): dnf-plugins-core-4.4.1-4.fc39.noarch. 14 MB/s | 38 kB 00:00 (25/140): elfutils-default-yama-scope-0.189-3.f 5.6 MB/s | 13 kB 00:00 (26/140): elfutils-libelf-0.189-3.fc39.x86_64.r 69 MB/s | 195 kB 00:00 (27/140): elfutils-libs-0.189-3.fc39.x86_64.rpm 72 MB/s | 258 kB 00:00 (28/140): expat-2.5.0-2.fc38.x86_64.rpm 26 MB/s | 110 kB 00:00 (29/140): fedora-gpg-keys-39-0.3.noarch.rpm 48 MB/s | 127 kB 00:00 (30/140): fedora-release-39-0.21.noarch.rpm 4.2 MB/s | 6.9 kB 00:00 (31/140): fedora-release-common-39-0.21.noarch. 11 MB/s | 17 kB 00:00 (32/140): fedora-release-identity-basic-39-0.21 3.6 MB/s | 7.6 kB 00:00 (33/140): fedora-repos-39-0.3.noarch.rpm 4.4 MB/s | 8.8 kB 00:00 (34/140): fedora-repos-rawhide-39-0.3.noarch.rp 4.7 MB/s | 8.4 kB 00:00 (35/140): file-libs-5.44-4.fc39.x86_64.rpm 109 MB/s | 729 kB 00:00 (36/140): findutils-4.9.0-4.fc39.x86_64.rpm 74 MB/s | 491 kB 00:00 (37/140): filesystem-3.18-4.fc39.x86_64.rpm 117 MB/s | 1.1 MB 00:00 (38/140): fmt-10.0.0-2.fc39.x86_64.rpm 55 MB/s | 127 kB 00:00 (39/140): gawk-5.2.2-1.fc39.x86_64.rpm 163 MB/s | 1.1 MB 00:00 (40/140): gdbm-libs-1.23-3.fc38.x86_64.rpm 7.4 MB/s | 56 kB 00:00 (41/140): glib2-2.77.0-3.fc39.x86_64.rpm 182 MB/s | 2.8 MB 00:00 (42/140): glibc-common-2.37.9000-17.fc39.x86_64 38 MB/s | 346 kB 00:00 (43/140): glibc-2.37.9000-17.fc39.x86_64.rpm 151 MB/s | 2.2 MB 00:00 (44/140): glibc-minimal-langpack-2.37.9000-17.f 16 MB/s | 64 kB 00:00 (45/140): gmp-6.2.1-4.fc38.x86_64.rpm 70 MB/s | 313 kB 00:00 (46/140): gpgme-1.20.0-4.fc39.x86_64.rpm 48 MB/s | 210 kB 00:00 (47/140): gnutls-3.8.0-6.fc39.x86_64.rpm 112 MB/s | 1.1 MB 00:00 (48/140): gnupg2-2.4.3-1.fc39.x86_64.rpm 173 MB/s | 2.6 MB 00:00 (49/140): grep-3.11-1.fc39.x86_64.rpm 33 MB/s | 298 kB 00:00 (50/140): ima-evm-utils-1.5-1.fc39.x86_64.rpm 14 MB/s | 63 kB 00:00 (51/140): keyutils-libs-1.6.1-6.fc38.x86_64.rpm 13 MB/s | 31 kB 00:00 (52/140): json-c-0.16-4.fc38.x86_64.rpm 13 MB/s | 41 kB 00:00 (53/140): krb5-libs-1.21-1.fc39.x86_64.rpm 150 MB/s | 765 kB 00:00 (54/140): libacl-2.3.1-7.fc39.x86_64.rpm 7.0 MB/s | 23 kB 00:00 (55/140): libarchive-3.6.1-5.fc39.x86_64.rpm 110 MB/s | 400 kB 00:00 (56/140): libattr-2.5.1-7.fc39.x86_64.rpm 9.3 MB/s | 18 kB 00:00 (57/140): libassuan-2.5.6-1.fc39.x86_64.rpm 21 MB/s | 67 kB 00:00 (58/140): libb2-0.98.1-8.fc38.x86_64.rpm 17 MB/s | 25 kB 00:00 (59/140): libbrotli-1.0.9-12.fc39.x86_64.rpm 98 MB/s | 317 kB 00:00 (60/140): libcap-2.48-6.fc38.x86_64.rpm 19 MB/s | 67 kB 00:00 (61/140): libcap-ng-0.8.3-6.fc39.x86_64.rpm 11 MB/s | 32 kB 00:00 (62/140): libcom_err-1.47.0-1.fc39.x86_64.rpm 11 MB/s | 26 kB 00:00 (63/140): libcomps-0.1.19-2.fc39.x86_64.rpm 33 MB/s | 77 kB 00:00 (64/140): libcurl-8.1.2-1.fc39.x86_64.rpm 90 MB/s | 323 kB 00:00 (65/140): 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Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-4.fc39.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.1.1-4.fc39.x86_64 1/140 Running scriptlet: libgcc-13.1.1-4.fc39.x86_64 1/140 Installing : tzdata-2023c-1.fc39.noarch 2/140 Installing : crypto-policies-20230614-1.git5f3458e.fc39.noarc 3/140 Running scriptlet: crypto-policies-20230614-1.git5f3458e.fc39.noarc 3/140 Installing : fedora-release-identity-basic-39-0.21.noarch 4/140 Installing : publicsuffix-list-dafsa-20230614-1.fc39.noarch 5/140 Installing : pcre2-syntax-10.42-1.fc38.1.noarch 6/140 Installing : ncurses-base-6.4-5.20230520.fc39.noarch 7/140 Installing : libssh-config-0.10.5-1.fc39.noarch 8/140 Installing : fedora-gpg-keys-39-0.3.noarch 9/140 Installing : fedora-release-39-0.21.noarch 10/140 Installing : fedora-release-common-39-0.21.noarch 11/140 Installing : fedora-repos-rawhide-39-0.3.noarch 12/140 Installing : fedora-repos-39-0.3.noarch 13/140 Installing : setup-2.14.3-3.fc39.noarch 14/140 Running scriptlet: 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Installing : python3-3.12.0~b4-1.fc39.x86_64 104/140 Installing : python3-libs-3.12.0~b4-1.fc39.x86_64 105/140 Installing : python3-libcomps-0.1.19-2.fc39.x86_64 106/140 Installing : python3-dbus-1.3.2-3.fc39.x86_64 107/140 Installing : python3-distro-1.8.0-5.fc39.noarch 108/140 Installing : python3-six-1.16.0-11.fc39.noarch 109/140 Installing : python3-dateutil-1:2.8.2-9.fc39.noarch 110/140 Installing : python3-systemd-235-4.fc39.x86_64 111/140 Installing : libarchive-3.6.1-5.fc39.x86_64 112/140 Installing : libevent-2.1.12-8.fc38.x86_64 113/140 Installing : openldap-2.6.4-3.fc39.x86_64 114/140 Installing : libcurl-8.1.2-1.fc39.x86_64 115/140 Running scriptlet: tpm2-tss-4.0.1-3.fc38.x86_64 116/140 useradd: Warning: missing or non-executable shell '/usr/sbin/nologin' Installing : tpm2-tss-4.0.1-3.fc38.x86_64 116/140 Installing : gnupg2-2.4.3-1.fc39.x86_64 117/140 Installing : gpgme-1.20.0-4.fc39.x86_64 118/140 Installing : librepo-1.15.1-3.fc39.x86_64 119/140 Installing : 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python3-dnf-4.16.1-3.fc39.noarch 137/140 Installing : python3-dnf-plugins-core-4.4.1-4.fc39.noarch 138/140 Installing : dnf-plugins-core-4.4.1-4.fc39.noarch 139/140 Running scriptlet: rpm-4.18.91-7.fc39.x86_64 140/140 Installing : rpm-4.18.91-7.fc39.x86_64 140/140 Running scriptlet: filesystem-3.18-4.fc39.x86_64 140/140 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 140/140 Running scriptlet: rpm-4.18.91-7.fc39.x86_64 140/140 Verifying : audit-libs-3.1.1-4.fc39.x86_64 1/140 Verifying : libblkid-2.39.1-2.fc39.x86_64 2/140 Verifying : libmount-2.39.1-2.fc39.x86_64 3/140 Verifying : libreport-filesystem-2.17.11-2.fc39.noarch 4/140 Verifying : libselinux-3.5-4.fc39.x86_64 5/140 Verifying : libsmartcols-2.39.1-2.fc39.x86_64 6/140 Verifying : libuuid-2.39.1-2.fc39.x86_64 7/140 Verifying : rpm-4.18.91-7.fc39.x86_64 8/140 Verifying : rpm-build-libs-4.18.91-7.fc39.x86_64 9/140 Verifying : rpm-libs-4.18.91-7.fc39.x86_64 10/140 Verifying : rpm-sign-libs-4.18.91-7.fc39.x86_64 11/140 Verifying : alternatives-1.24-1.fc39.x86_64 12/140 Verifying : basesystem-11-17.fc39.noarch 13/140 Verifying : bash-5.2.15-3.fc38.x86_64 14/140 Verifying : bzip2-libs-1.0.8-13.fc38.x86_64 15/140 Verifying : ca-certificates-2023.2.60-2.fc38.noarch 16/140 Verifying : coreutils-9.3-1.fc39.x86_64 17/140 Verifying : coreutils-common-9.3-1.fc39.x86_64 18/140 Verifying : crypto-policies-20230614-1.git5f3458e.fc39.noarc 19/140 Verifying : curl-8.1.2-1.fc39.x86_64 20/140 Verifying : cyrus-sasl-lib-2.1.28-10.fc39.x86_64 21/140 Verifying : dbus-libs-1:1.14.8-1.fc39.x86_64 22/140 Verifying : dnf-data-4.16.1-3.fc39.noarch 23/140 Verifying : dnf-plugins-core-4.4.1-4.fc39.noarch 24/140 Verifying : elfutils-default-yama-scope-0.189-3.fc39.noarch 25/140 Verifying : elfutils-libelf-0.189-3.fc39.x86_64 26/140 Verifying : elfutils-libs-0.189-3.fc39.x86_64 27/140 Verifying : expat-2.5.0-2.fc38.x86_64 28/140 Verifying : fedora-gpg-keys-39-0.3.noarch 29/140 Verifying : fedora-release-39-0.21.noarch 30/140 Verifying : fedora-release-common-39-0.21.noarch 31/140 Verifying : fedora-release-identity-basic-39-0.21.noarch 32/140 Verifying : fedora-repos-39-0.3.noarch 33/140 Verifying : fedora-repos-rawhide-39-0.3.noarch 34/140 Verifying : file-libs-5.44-4.fc39.x86_64 35/140 Verifying : filesystem-3.18-4.fc39.x86_64 36/140 Verifying : findutils-1:4.9.0-4.fc39.x86_64 37/140 Verifying : fmt-10.0.0-2.fc39.x86_64 38/140 Verifying : gawk-5.2.2-1.fc39.x86_64 39/140 Verifying : gdbm-libs-1:1.23-3.fc38.x86_64 40/140 Verifying : glib2-2.77.0-3.fc39.x86_64 41/140 Verifying : glibc-2.37.9000-17.fc39.x86_64 42/140 Verifying : glibc-common-2.37.9000-17.fc39.x86_64 43/140 Verifying : glibc-minimal-langpack-2.37.9000-17.fc39.x86_64 44/140 Verifying : gmp-1:6.2.1-4.fc38.x86_64 45/140 Verifying : gnupg2-2.4.3-1.fc39.x86_64 46/140 Verifying : gnutls-3.8.0-6.fc39.x86_64 47/140 Verifying : gpgme-1.20.0-4.fc39.x86_64 48/140 Verifying : grep-3.11-1.fc39.x86_64 49/140 Verifying : ima-evm-utils-1.5-1.fc39.x86_64 50/140 Verifying : json-c-0.16-4.fc38.x86_64 51/140 Verifying : keyutils-libs-1.6.1-6.fc38.x86_64 52/140 Verifying : krb5-libs-1.21-1.fc39.x86_64 53/140 Verifying : libacl-2.3.1-7.fc39.x86_64 54/140 Verifying : libarchive-3.6.1-5.fc39.x86_64 55/140 Verifying : libassuan-2.5.6-1.fc39.x86_64 56/140 Verifying : libattr-2.5.1-7.fc39.x86_64 57/140 Verifying : libb2-0.98.1-8.fc38.x86_64 58/140 Verifying : libbrotli-1.0.9-12.fc39.x86_64 59/140 Verifying : libcap-2.48-6.fc38.x86_64 60/140 Verifying : libcap-ng-0.8.3-6.fc39.x86_64 61/140 Verifying : libcom_err-1.47.0-1.fc39.x86_64 62/140 Verifying : libcomps-0.1.19-2.fc39.x86_64 63/140 Verifying : libcurl-8.1.2-1.fc39.x86_64 64/140 Verifying : libdnf-0.70.1-4.fc39.x86_64 65/140 Verifying : libdnf5-5.1.0-1.fc39.x86_64 66/140 Verifying : libeconf-0.4.0-5.fc38.x86_64 67/140 Verifying : libevent-2.1.12-8.fc38.x86_64 68/140 Verifying : libffi-3.4.4-3.fc39.x86_64 69/140 Verifying : libfsverity-1.4-9.fc38.x86_64 70/140 Verifying : libgcc-13.1.1-4.fc39.x86_64 71/140 Verifying : libgcrypt-1.10.2-1.fc39.x86_64 72/140 Verifying : libgomp-13.1.1-4.fc39.x86_64 73/140 Verifying : libgpg-error-1.47-1.fc39.x86_64 74/140 Verifying : libidn2-2.3.4-2.fc38.x86_64 75/140 Verifying : libksba-1.6.4-1.fc39.x86_64 76/140 Verifying : libmodulemd-2.15.0-4.fc39.x86_64 77/140 Verifying : libnghttp2-1.55.1-1.fc39.x86_64 78/140 Verifying : libnsl2-2.0.0-5.fc38.x86_64 79/140 Verifying : libpsl-0.21.2-3.fc39.x86_64 80/140 Verifying : librepo-1.15.1-3.fc39.x86_64 81/140 Verifying : libsemanage-3.5-3.fc39.x86_64 82/140 Verifying : libsepol-3.5-1.fc39.x86_64 83/140 Verifying : libsigsegv-2.14-4.fc38.x86_64 84/140 Verifying : libsolv-0.7.24-6.fc39.x86_64 85/140 Verifying : libssh-0.10.5-1.fc39.x86_64 86/140 Verifying : libssh-config-0.10.5-1.fc39.noarch 87/140 Verifying : libstdc++-13.1.1-4.fc39.x86_64 88/140 Verifying : libtasn1-4.19.0-2.fc38.x86_64 89/140 Verifying : libtirpc-1.3.3-1.rc1.fc39.x86_64 90/140 Verifying : libunistring-1.1-3.fc38.x86_64 91/140 Verifying : libunistring1.0-1.0-1.fc38.x86_64 92/140 Verifying : libverto-0.3.2-5.fc38.x86_64 93/140 Verifying : libxcrypt-4.4.36-1.fc39.x86_64 94/140 Verifying : libxml2-2.10.4-2.fc39.x86_64 95/140 Verifying : libyaml-0.2.5-9.fc38.x86_64 96/140 Verifying : libzstd-1.5.5-1.fc39.x86_64 97/140 Verifying : lua-libs-5.4.4-9.fc39.x86_64 98/140 Verifying : lz4-libs-1.9.4-3.fc39.x86_64 99/140 Verifying : mpdecimal-2.5.1-6.fc38.x86_64 100/140 Verifying : mpfr-4.2.0-2.fc39.x86_64 101/140 Verifying : ncurses-base-6.4-5.20230520.fc39.noarch 102/140 Verifying : ncurses-libs-6.4-5.20230520.fc39.x86_64 103/140 Verifying : nettle-3.9.1-1.fc39.x86_64 104/140 Verifying : npth-1.6-13.fc39.x86_64 105/140 Verifying : openldap-2.6.4-3.fc39.x86_64 106/140 Verifying : openssl-libs-1:3.0.8-2.fc39.x86_64 107/140 Verifying : p11-kit-0.24.1-6.fc38.x86_64 108/140 Verifying : p11-kit-trust-0.24.1-6.fc38.x86_64 109/140 Verifying : pcre2-10.42-1.fc38.1.x86_64 110/140 Verifying : pcre2-syntax-10.42-1.fc38.1.noarch 111/140 Verifying : popt-1.19-2.fc38.x86_64 112/140 Verifying : publicsuffix-list-dafsa-20230614-1.fc39.noarch 113/140 Verifying : python-pip-wheel-23.1.2-2.fc39.noarch 114/140 Verifying : python3-3.12.0~b4-1.fc39.x86_64 115/140 Verifying : python3-dateutil-1:2.8.2-9.fc39.noarch 116/140 Verifying : python3-dbus-1.3.2-3.fc39.x86_64 117/140 Verifying : python3-distro-1.8.0-5.fc39.noarch 118/140 Verifying : python3-dnf-4.16.1-3.fc39.noarch 119/140 Verifying : python3-dnf-plugins-core-4.4.1-4.fc39.noarch 120/140 Verifying : python3-gpg-1.20.0-4.fc39.x86_64 121/140 Verifying : python3-hawkey-0.70.1-4.fc39.x86_64 122/140 Verifying : python3-libcomps-0.1.19-2.fc39.x86_64 123/140 Verifying : python3-libdnf-0.70.1-4.fc39.x86_64 124/140 Verifying : python3-libs-3.12.0~b4-1.fc39.x86_64 125/140 Verifying : python3-rpm-4.18.91-7.fc39.x86_64 126/140 Verifying : python3-six-1.16.0-11.fc39.noarch 127/140 Verifying : python3-systemd-235-4.fc39.x86_64 128/140 Verifying : readline-8.2-3.fc38.x86_64 129/140 Verifying : rpm-sequoia-1.4.1-1.fc39.x86_64 130/140 Verifying : sed-4.8-12.fc38.x86_64 131/140 Verifying : setup-2.14.3-3.fc39.noarch 132/140 Verifying : shadow-utils-2:4.13-7.fc39.x86_64 133/140 Verifying : sqlite-libs-3.42.0-6.fc39.x86_64 134/140 Verifying : systemd-libs-254~rc2-4.fc39.x86_64 135/140 Verifying : tpm2-tss-4.0.1-3.fc38.x86_64 136/140 Verifying : tzdata-2023c-1.fc39.noarch 137/140 Verifying : xz-libs-5.4.3-1.fc39.x86_64 138/140 Verifying : zchunk-libs-1.3.1-1.fc39.x86_64 139/140 Verifying : zlib-1.2.13-3.fc38.x86_64 140/140 Installed products updated. Installed: alternatives-1.24-1.fc39.x86_64 audit-libs-3.1.1-4.fc39.x86_64 basesystem-11-17.fc39.noarch bash-5.2.15-3.fc38.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 ca-certificates-2023.2.60-2.fc38.noarch coreutils-9.3-1.fc39.x86_64 coreutils-common-9.3-1.fc39.x86_64 crypto-policies-20230614-1.git5f3458e.fc39.noarch curl-8.1.2-1.fc39.x86_64 cyrus-sasl-lib-2.1.28-10.fc39.x86_64 dbus-libs-1:1.14.8-1.fc39.x86_64 dnf-data-4.16.1-3.fc39.noarch dnf-plugins-core-4.4.1-4.fc39.noarch elfutils-default-yama-scope-0.189-3.fc39.noarch elfutils-libelf-0.189-3.fc39.x86_64 elfutils-libs-0.189-3.fc39.x86_64 expat-2.5.0-2.fc38.x86_64 fedora-gpg-keys-39-0.3.noarch fedora-release-39-0.21.noarch fedora-release-common-39-0.21.noarch fedora-release-identity-basic-39-0.21.noarch fedora-repos-39-0.3.noarch fedora-repos-rawhide-39-0.3.noarch file-libs-5.44-4.fc39.x86_64 filesystem-3.18-4.fc39.x86_64 findutils-1:4.9.0-4.fc39.x86_64 fmt-10.0.0-2.fc39.x86_64 gawk-5.2.2-1.fc39.x86_64 gdbm-libs-1:1.23-3.fc38.x86_64 glib2-2.77.0-3.fc39.x86_64 glibc-2.37.9000-17.fc39.x86_64 glibc-common-2.37.9000-17.fc39.x86_64 glibc-minimal-langpack-2.37.9000-17.fc39.x86_64 gmp-1:6.2.1-4.fc38.x86_64 gnupg2-2.4.3-1.fc39.x86_64 gnutls-3.8.0-6.fc39.x86_64 gpgme-1.20.0-4.fc39.x86_64 grep-3.11-1.fc39.x86_64 ima-evm-utils-1.5-1.fc39.x86_64 json-c-0.16-4.fc38.x86_64 keyutils-libs-1.6.1-6.fc38.x86_64 krb5-libs-1.21-1.fc39.x86_64 libacl-2.3.1-7.fc39.x86_64 libarchive-3.6.1-5.fc39.x86_64 libassuan-2.5.6-1.fc39.x86_64 libattr-2.5.1-7.fc39.x86_64 libb2-0.98.1-8.fc38.x86_64 libblkid-2.39.1-2.fc39.x86_64 libbrotli-1.0.9-12.fc39.x86_64 libcap-2.48-6.fc38.x86_64 libcap-ng-0.8.3-6.fc39.x86_64 libcom_err-1.47.0-1.fc39.x86_64 libcomps-0.1.19-2.fc39.x86_64 libcurl-8.1.2-1.fc39.x86_64 libdnf-0.70.1-4.fc39.x86_64 libdnf5-5.1.0-1.fc39.x86_64 libeconf-0.4.0-5.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libffi-3.4.4-3.fc39.x86_64 libfsverity-1.4-9.fc38.x86_64 libgcc-13.1.1-4.fc39.x86_64 libgcrypt-1.10.2-1.fc39.x86_64 libgomp-13.1.1-4.fc39.x86_64 libgpg-error-1.47-1.fc39.x86_64 libidn2-2.3.4-2.fc38.x86_64 libksba-1.6.4-1.fc39.x86_64 libmodulemd-2.15.0-4.fc39.x86_64 libmount-2.39.1-2.fc39.x86_64 libnghttp2-1.55.1-1.fc39.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libpsl-0.21.2-3.fc39.x86_64 librepo-1.15.1-3.fc39.x86_64 libreport-filesystem-2.17.11-2.fc39.noarch libselinux-3.5-4.fc39.x86_64 libsemanage-3.5-3.fc39.x86_64 libsepol-3.5-1.fc39.x86_64 libsigsegv-2.14-4.fc38.x86_64 libsmartcols-2.39.1-2.fc39.x86_64 libsolv-0.7.24-6.fc39.x86_64 libssh-0.10.5-1.fc39.x86_64 libssh-config-0.10.5-1.fc39.noarch libstdc++-13.1.1-4.fc39.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libtirpc-1.3.3-1.rc1.fc39.x86_64 libunistring-1.1-3.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libuuid-2.39.1-2.fc39.x86_64 libverto-0.3.2-5.fc38.x86_64 libxcrypt-4.4.36-1.fc39.x86_64 libxml2-2.10.4-2.fc39.x86_64 libyaml-0.2.5-9.fc38.x86_64 libzstd-1.5.5-1.fc39.x86_64 lua-libs-5.4.4-9.fc39.x86_64 lz4-libs-1.9.4-3.fc39.x86_64 mpdecimal-2.5.1-6.fc38.x86_64 mpfr-4.2.0-2.fc39.x86_64 ncurses-base-6.4-5.20230520.fc39.noarch ncurses-libs-6.4-5.20230520.fc39.x86_64 nettle-3.9.1-1.fc39.x86_64 npth-1.6-13.fc39.x86_64 openldap-2.6.4-3.fc39.x86_64 openssl-libs-1:3.0.8-2.fc39.x86_64 p11-kit-0.24.1-6.fc38.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 pcre2-10.42-1.fc38.1.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch popt-1.19-2.fc38.x86_64 publicsuffix-list-dafsa-20230614-1.fc39.noarch python-pip-wheel-23.1.2-2.fc39.noarch python3-3.12.0~b4-1.fc39.x86_64 python3-dateutil-1:2.8.2-9.fc39.noarch python3-dbus-1.3.2-3.fc39.x86_64 python3-distro-1.8.0-5.fc39.noarch python3-dnf-4.16.1-3.fc39.noarch python3-dnf-plugins-core-4.4.1-4.fc39.noarch python3-gpg-1.20.0-4.fc39.x86_64 python3-hawkey-0.70.1-4.fc39.x86_64 python3-libcomps-0.1.19-2.fc39.x86_64 python3-libdnf-0.70.1-4.fc39.x86_64 python3-libs-3.12.0~b4-1.fc39.x86_64 python3-rpm-4.18.91-7.fc39.x86_64 python3-six-1.16.0-11.fc39.noarch python3-systemd-235-4.fc39.x86_64 readline-8.2-3.fc38.x86_64 rpm-4.18.91-7.fc39.x86_64 rpm-build-libs-4.18.91-7.fc39.x86_64 rpm-libs-4.18.91-7.fc39.x86_64 rpm-sequoia-1.4.1-1.fc39.x86_64 rpm-sign-libs-4.18.91-7.fc39.x86_64 sed-4.8-12.fc38.x86_64 setup-2.14.3-3.fc39.noarch shadow-utils-2:4.13-7.fc39.x86_64 sqlite-libs-3.42.0-6.fc39.x86_64 systemd-libs-254~rc2-4.fc39.x86_64 tpm2-tss-4.0.1-3.fc38.x86_64 tzdata-2023c-1.fc39.noarch xz-libs-5.4.3-1.fc39.x86_64 zchunk-libs-1.3.1-1.fc39.x86_64 zlib-1.2.13-3.fc38.x86_64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1689776071.383479/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (direct choice) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 111 MB/s | 14 MB 00:00 fedora 43 MB/s | 72 MB 00:01 Last metadata expiration check: 0:00:02 ago on Wed Jul 19 14:15:11 2023. Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.15-3.fc38 fedora 1.8 M bzip2 x86_64 1.0.8-13.fc38 fedora 52 k coreutils x86_64 9.3-1.fc39 fedora 1.1 M cpio x86_64 2.14-2.fc39 fedora 279 k diffutils x86_64 3.10-2.fc39 fedora 398 k fedora-release-common noarch 39-0.21 fedora 17 k findutils x86_64 1:4.9.0-4.fc39 fedora 491 k gawk x86_64 5.2.2-1.fc39 fedora 1.1 M glibc-minimal-langpack x86_64 2.37.9000-17.fc39 fedora 64 k grep x86_64 3.11-1.fc39 fedora 298 k gzip x86_64 1.12-3.fc38 fedora 166 k info x86_64 7.0.3-2.fc39 fedora 182 k patch x86_64 2.7.6-21.fc39 fedora 126 k redhat-rpm-config noarch 261-1.fc39 fedora 84 k rpm-build x86_64 4.18.91-7.fc39 copr_base 70 k sed x86_64 4.8-12.fc38 fedora 306 k shadow-utils x86_64 2:4.13-7.fc39 fedora 1.3 M tar x86_64 2:1.34-8.fc39 fedora 888 k unzip x86_64 6.0-60.fc38 fedora 184 k util-linux x86_64 2.39.1-2.fc39 copr_base 1.1 M which x86_64 2.21-39.fc39 fedora 42 k xz x86_64 5.4.3-1.fc39 fedora 555 k Installing dependencies: alternatives x86_64 1.24-1.fc39 fedora 39 k ansible-srpm-macros noarch 1-10.fc39 fedora 21 k audit-libs x86_64 3.1.1-4.fc39 copr_base 117 k authselect x86_64 1.4.2-2.fc38 fedora 144 k authselect-libs x86_64 1.4.2-2.fc38 fedora 249 k basesystem noarch 11-17.fc39 fedora 7.0 k binutils x86_64 2.40-9.fc39 fedora 5.6 M binutils-gold x86_64 2.40-9.fc39 fedora 797 k bzip2-libs x86_64 1.0.8-13.fc38 fedora 41 k ca-certificates noarch 2023.2.60-2.fc38 fedora 845 k coreutils-common x86_64 9.3-1.fc39 fedora 2.1 M cracklib x86_64 2.9.11-1.fc39 fedora 94 k crypto-policies noarch 20230614-1.git5f3458e.fc39 fedora 94 k curl x86_64 8.1.2-1.fc39 fedora 345 k cyrus-sasl-lib x86_64 2.1.28-10.fc39 fedora 792 k debugedit x86_64 5.0-9.fc39 fedora 77 k dwz x86_64 0.15-2.fc38 fedora 135 k ed x86_64 1.19-2.fc38 fedora 78 k efi-srpm-macros noarch 5-8.fc39 fedora 22 k elfutils x86_64 0.189-3.fc39 fedora 537 k elfutils-debuginfod-client x86_64 0.189-3.fc39 fedora 38 k elfutils-default-yama-scope noarch 0.189-3.fc39 fedora 13 k elfutils-libelf x86_64 0.189-3.fc39 fedora 195 k elfutils-libs x86_64 0.189-3.fc39 fedora 258 k fedora-gpg-keys noarch 39-0.3 fedora 127 k fedora-release noarch 39-0.21 fedora 6.9 k fedora-release-identity-basic noarch 39-0.21 fedora 7.6 k fedora-repos noarch 39-0.3 fedora 8.8 k fedora-repos-rawhide noarch 39-0.3 fedora 8.4 k file x86_64 5.44-4.fc39 fedora 49 k file-libs x86_64 5.44-4.fc39 fedora 729 k filesystem x86_64 3.18-4.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-11.fc38 fedora 26 k fpc-srpm-macros noarch 1.3-7.fc38 fedora 7.8 k gdb-minimal x86_64 13.2-5.fc39 fedora 4.2 M gdbm-libs x86_64 1:1.23-3.fc38 fedora 56 k ghc-srpm-macros noarch 1.6.1-1.fc38 fedora 8.0 k glibc x86_64 2.37.9000-17.fc39 fedora 2.2 M glibc-common x86_64 2.37.9000-17.fc39 fedora 346 k glibc-gconv-extra x86_64 2.37.9000-17.fc39 fedora 1.6 M gmp x86_64 1:6.2.1-4.fc38 fedora 313 k gnat-srpm-macros noarch 6-2.fc38 fedora 8.8 k go-srpm-macros noarch 3.2.0-3.fc39 fedora 27 k jansson x86_64 2.13.1-6.fc38 fedora 44 k kernel-srpm-macros noarch 1.0-19.fc39 fedora 10 k keyutils-libs x86_64 1.6.1-6.fc38 fedora 31 k krb5-libs x86_64 1.21-1.fc39 fedora 765 k libacl x86_64 2.3.1-7.fc39 fedora 23 k libarchive x86_64 3.6.1-5.fc39 fedora 400 k libattr x86_64 2.5.1-7.fc39 fedora 18 k libblkid x86_64 2.39.1-2.fc39 copr_base 117 k libbrotli x86_64 1.0.9-12.fc39 fedora 317 k libcap x86_64 2.48-6.fc38 fedora 67 k libcap-ng x86_64 0.8.3-6.fc39 fedora 32 k libcom_err x86_64 1.47.0-1.fc39 fedora 26 k libcurl x86_64 8.1.2-1.fc39 fedora 323 k libdb x86_64 5.3.28-55.fc38 fedora 758 k libeconf x86_64 0.4.0-5.fc38 fedora 27 k libevent x86_64 2.1.12-8.fc38 fedora 257 k libfdisk x86_64 2.39.1-2.fc39 copr_base 163 k libffi x86_64 3.4.4-3.fc39 fedora 40 k libgcc x86_64 13.1.1-4.fc39 fedora 107 k libgomp x86_64 13.1.1-4.fc39 fedora 317 k libidn2 x86_64 2.3.4-2.fc38 fedora 160 k libmount x86_64 2.39.1-2.fc39 copr_base 155 k libnghttp2 x86_64 1.55.1-1.fc39 fedora 75 k libnsl2 x86_64 2.0.0-5.fc38 fedora 30 k libpkgconf x86_64 1.9.5-1.fc39 fedora 38 k libpsl x86_64 0.21.2-3.fc39 fedora 63 k libpwquality x86_64 1.4.5-5.fc39 fedora 119 k libselinux x86_64 3.5-4.fc39 copr_base 87 k libsemanage x86_64 3.5-3.fc39 fedora 119 k libsepol x86_64 3.5-1.fc39 fedora 324 k libsigsegv x86_64 2.14-4.fc38 fedora 27 k libsmartcols x86_64 2.39.1-2.fc39 copr_base 68 k libssh x86_64 0.10.5-1.fc39 fedora 211 k libssh-config noarch 0.10.5-1.fc39 fedora 9.0 k libstdc++ x86_64 13.1.1-4.fc39 fedora 861 k libtasn1 x86_64 4.19.0-2.fc38 fedora 74 k libtirpc x86_64 1.3.3-1.rc1.fc39 fedora 93 k libunistring x86_64 1.1-3.fc38 fedora 545 k libunistring1.0 x86_64 1.0-1.fc38 fedora 539 k libutempter x86_64 1.2.1-9.fc39 fedora 26 k libuuid x86_64 2.39.1-2.fc39 copr_base 29 k libverto x86_64 0.3.2-5.fc38 fedora 21 k libxcrypt x86_64 4.4.36-1.fc39 fedora 119 k libxml2 x86_64 2.10.4-2.fc39 fedora 701 k libzstd x86_64 1.5.5-1.fc39 fedora 308 k lua-libs x86_64 5.4.4-9.fc39 fedora 133 k lua-srpm-macros noarch 1-8.fc38 fedora 8.6 k lz4-libs x86_64 1.9.4-3.fc39 fedora 67 k mpfr x86_64 4.2.0-2.fc39 fedora 343 k ncurses-base noarch 6.4-5.20230520.fc39 fedora 88 k ncurses-libs x86_64 6.4-5.20230520.fc39 fedora 336 k ocaml-srpm-macros noarch 8-1.fc39 fedora 13 k openblas-srpm-macros noarch 2-13.fc38 fedora 7.5 k openldap x86_64 2.6.4-3.fc39 fedora 254 k openssl-libs x86_64 1:3.0.8-2.fc39 fedora 2.1 M p11-kit x86_64 0.24.1-6.fc38 fedora 359 k p11-kit-trust x86_64 0.24.1-6.fc38 fedora 136 k package-notes-srpm-macros noarch 0.5-8.fc39 fedora 11 k pam x86_64 1.5.3-1.fc39 fedora 547 k pam-libs x86_64 1.5.3-1.fc39 fedora 57 k pcre2 x86_64 10.42-1.fc38.1 fedora 234 k pcre2-syntax noarch 10.42-1.fc38.1 fedora 144 k perl-srpm-macros noarch 1-50.fc39 fedora 8.3 k pkgconf x86_64 1.9.5-1.fc39 fedora 42 k pkgconf-m4 noarch 1.9.5-1.fc39 fedora 14 k pkgconf-pkg-config x86_64 1.9.5-1.fc39 fedora 9.6 k popt x86_64 1.19-2.fc38 fedora 67 k publicsuffix-list-dafsa noarch 20230614-1.fc39 fedora 57 k pyproject-srpm-macros noarch 1.9.0-1.fc39 fedora 15 k python-srpm-macros noarch 3.12-1.fc39 fedora 25 k qt5-srpm-macros noarch 5.15.10-1.fc39 fedora 7.8 k qt6-srpm-macros noarch 6.5.1-1.fc39 fedora 9.2 k readline x86_64 8.2-3.fc38 fedora 212 k rpm x86_64 4.18.91-7.fc39 copr_base 503 k rpm-build-libs x86_64 4.18.91-7.fc39 copr_base 96 k rpm-libs x86_64 4.18.91-7.fc39 copr_base 309 k rpm-sequoia x86_64 1.4.1-1.fc39 fedora 843 k rpmautospec-rpm-macros noarch 0.3.5-3.fc39 fedora 8.7 k rust-srpm-macros noarch 24-2.fc39 copr_base 13 k setup noarch 2.14.3-3.fc39 fedora 152 k sqlite-libs x86_64 3.42.0-6.fc39 fedora 678 k systemd-libs x86_64 254~rc2-4.fc39 fedora 686 k tzdata noarch 2023c-1.fc39 fedora 718 k util-linux-core x86_64 2.39.1-2.fc39 copr_base 480 k xxhash-libs x86_64 0.8.1-5.fc39 fedora 40 k xz-libs x86_64 5.4.3-1.fc39 fedora 108 k zip x86_64 3.0-36.fc38 fedora 265 k zlib x86_64 1.2.13-3.fc38 fedora 95 k zstd x86_64 1.5.5-1.fc39 fedora 482 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 154 Packages Total download size: 53 M Installed size: 180 M Downloading Packages: (1/154): libblkid-2.39.1-2.fc39.x86_64.rpm 4.3 MB/s | 117 kB 00:00 (2/154): audit-libs-3.1.1-4.fc39.x86_64.rpm 3.7 MB/s | 117 kB 00:00 (3/154): libmount-2.39.1-2.fc39.x86_64.rpm 28 MB/s | 155 kB 00:00 (4/154): libselinux-3.5-4.fc39.x86_64.rpm 34 MB/s | 87 kB 00:00 (5/154): libsmartcols-2.39.1-2.fc39.x86_64.rpm 37 MB/s | 68 kB 00:00 (6/154): libuuid-2.39.1-2.fc39.x86_64.rpm 15 MB/s | 29 kB 00:00 (7/154): rpm-4.18.91-7.fc39.x86_64.rpm 147 MB/s | 503 kB 00:00 (8/154): rpm-build-4.18.91-7.fc39.x86_64.rpm 18 MB/s | 70 kB 00:00 (9/154): rpm-build-libs-4.18.91-7.fc39.x86_64.r 50 MB/s | 96 kB 00:00 (10/154): rpm-libs-4.18.91-7.fc39.x86_64.rpm 109 MB/s | 309 kB 00:00 (11/154): rust-srpm-macros-24-2.fc39.noarch.rpm 5.1 MB/s | 13 kB 00:00 (12/154): util-linux-2.39.1-2.fc39.x86_64.rpm 153 MB/s | 1.1 MB 00:00 (13/154): util-linux-core-2.39.1-2.fc39.x86_64. 52 MB/s | 480 kB 00:00 (14/154): libfdisk-2.39.1-2.fc39.x86_64.rpm 2.6 MB/s | 163 kB 00:00 (15/154): alternatives-1.24-1.fc39.x86_64.rpm 4.4 MB/s | 39 kB 00:00 (16/154): ansible-srpm-macros-1-10.fc39.noarch. 2.4 MB/s | 21 kB 00:00 (17/154): authselect-1.4.2-2.fc38.x86_64.rpm 31 MB/s | 144 kB 00:00 (18/154): authselect-libs-1.4.2-2.fc38.x86_64.r 50 MB/s | 249 kB 00:00 (19/154): basesystem-11-17.fc39.noarch.rpm 1.5 MB/s | 7.0 kB 00:00 (20/154): binutils-gold-2.40-9.fc39.x86_64.rpm 103 MB/s | 797 kB 00:00 (21/154): bash-5.2.15-3.fc38.x86_64.rpm 97 MB/s | 1.8 MB 00:00 (22/154): binutils-2.40-9.fc39.x86_64.rpm 181 MB/s | 5.6 MB 00:00 (23/154): bzip2-1.0.8-13.fc38.x86_64.rpm 2.4 MB/s | 52 kB 00:00 (24/154): bzip2-libs-1.0.8-13.fc38.x86_64.rpm 3.3 MB/s | 41 kB 00:00 (25/154): ca-certificates-2023.2.60-2.fc38.noar 110 MB/s | 845 kB 00:00 (26/154): coreutils-9.3-1.fc39.x86_64.rpm 99 MB/s | 1.1 MB 00:00 (27/154): coreutils-common-9.3-1.fc39.x86_64.rp 151 MB/s | 2.1 MB 00:00 (28/154): cpio-2.14-2.fc39.x86_64.rpm 46 MB/s | 279 kB 00:00 (29/154): cracklib-2.9.11-1.fc39.x86_64.rpm 20 MB/s | 94 kB 00:00 (30/154): crypto-policies-20230614-1.git5f3458e 42 MB/s | 94 kB 00:00 (31/154): curl-8.1.2-1.fc39.x86_64.rpm 89 MB/s | 345 kB 00:00 (32/154): cyrus-sasl-lib-2.1.28-10.fc39.x86_64. 136 MB/s | 792 kB 00:00 (33/154): debugedit-5.0-9.fc39.x86_64.rpm 14 MB/s | 77 kB 00:00 (34/154): diffutils-3.10-2.fc39.x86_64.rpm 105 MB/s | 398 kB 00:00 (35/154): dwz-0.15-2.fc38.x86_64.rpm 39 MB/s | 135 kB 00:00 (36/154): ed-1.19-2.fc38.x86_64.rpm 21 MB/s | 78 kB 00:00 (37/154): efi-srpm-macros-5-8.fc39.noarch.rpm 7.7 MB/s | 22 kB 00:00 (38/154): elfutils-debuginfod-client-0.189-3.fc 17 MB/s | 38 kB 00:00 (39/154): elfutils-0.189-3.fc39.x86_64.rpm 126 MB/s | 537 kB 00:00 (40/154): elfutils-default-yama-scope-0.189-3.f 3.9 MB/s | 13 kB 00:00 (41/154): elfutils-libelf-0.189-3.fc39.x86_64.r 56 MB/s | 195 kB 00:00 (42/154): elfutils-libs-0.189-3.fc39.x86_64.rpm 65 MB/s | 258 kB 00:00 (43/154): fedora-gpg-keys-39-0.3.noarch.rpm 29 MB/s | 127 kB 00:00 (44/154): fedora-release-39-0.21.noarch.rpm 2.6 MB/s | 6.9 kB 00:00 (45/154): fedora-release-identity-basic-39-0.21 3.8 MB/s | 7.6 kB 00:00 (46/154): fedora-release-common-39-0.21.noarch. 6.4 MB/s | 17 kB 00:00 (47/154): fedora-repos-39-0.3.noarch.rpm 3.3 MB/s | 8.8 kB 00:00 (48/154): fedora-repos-rawhide-39-0.3.noarch.rp 6.3 MB/s | 8.4 kB 00:00 (49/154): file-5.44-4.fc39.x86_64.rpm 26 MB/s | 49 kB 00:00 (50/154): file-libs-5.44-4.fc39.x86_64.rpm 132 MB/s | 729 kB 00:00 (51/154): findutils-4.9.0-4.fc39.x86_64.rpm 68 MB/s | 491 kB 00:00 (52/154): filesystem-3.18-4.fc39.x86_64.rpm 111 MB/s | 1.1 MB 00:00 (53/154): fonts-srpm-macros-2.0.5-11.fc38.noarc 9.1 MB/s | 26 kB 00:00 (54/154): fpc-srpm-macros-1.3-7.fc38.noarch.rpm 3.7 MB/s | 7.8 kB 00:00 (55/154): gdbm-libs-1.23-3.fc38.x86_64.rpm 20 MB/s | 56 kB 00:00 (56/154): gawk-5.2.2-1.fc39.x86_64.rpm 135 MB/s | 1.1 MB 00:00 (57/154): gdb-minimal-13.2-5.fc39.x86_64.rpm 227 MB/s | 4.2 MB 00:00 (58/154): ghc-srpm-macros-1.6.1-1.fc38.noarch.r 614 kB/s | 8.0 kB 00:00 (59/154): glibc-2.37.9000-17.fc39.x86_64.rpm 148 MB/s | 2.2 MB 00:00 (60/154): glibc-common-2.37.9000-17.fc39.x86_64 42 MB/s | 346 kB 00:00 (61/154): glibc-gconv-extra-2.37.9000-17.fc39.x 158 MB/s | 1.6 MB 00:00 (62/154): glibc-minimal-langpack-2.37.9000-17.f 17 MB/s | 64 kB 00:00 (63/154): gmp-6.2.1-4.fc38.x86_64.rpm 78 MB/s | 313 kB 00:00 (64/154): gnat-srpm-macros-6-2.fc38.noarch.rpm 4.2 MB/s | 8.8 kB 00:00 (65/154): go-srpm-macros-3.2.0-3.fc39.noarch.rp 12 MB/s | 27 kB 00:00 (66/154): gzip-1.12-3.fc38.x86_64.rpm 58 MB/s | 166 kB 00:00 (67/154): grep-3.11-1.fc39.x86_64.rpm 55 MB/s | 298 kB 00:00 (68/154): info-7.0.3-2.fc39.x86_64.rpm 37 MB/s | 182 kB 00:00 (69/154): jansson-2.13.1-6.fc38.x86_64.rpm 15 MB/s | 44 kB 00:00 (70/154): kernel-srpm-macros-1.0-19.fc39.noarch 3.1 MB/s | 10 kB 00:00 (71/154): keyutils-libs-1.6.1-6.fc38.x86_64.rpm 7.1 MB/s | 31 kB 00:00 (72/154): krb5-libs-1.21-1.fc39.x86_64.rpm 107 MB/s | 765 kB 00:00 (73/154): libacl-2.3.1-7.fc39.x86_64.rpm 5.0 MB/s | 23 kB 00:00 (74/154): libarchive-3.6.1-5.fc39.x86_64.rpm 76 MB/s | 400 kB 00:00 (75/154): libattr-2.5.1-7.fc39.x86_64.rpm 11 MB/s | 18 kB 00:00 (76/154): libbrotli-1.0.9-12.fc39.x86_64.rpm 95 MB/s | 317 kB 00:00 (77/154): libcap-2.48-6.fc38.x86_64.rpm 22 MB/s | 67 kB 00:00 (78/154): libcap-ng-0.8.3-6.fc39.x86_64.rpm 12 MB/s | 32 kB 00:00 (79/154): libcom_err-1.47.0-1.fc39.x86_64.rpm 15 MB/s | 26 kB 00:00 (80/154): libcurl-8.1.2-1.fc39.x86_64.rpm 82 MB/s | 323 kB 00:00 (81/154): libeconf-0.4.0-5.fc38.x86_64.rpm 5.8 MB/s | 27 kB 00:00 (82/154): libdb-5.3.28-55.fc38.x86_64.rpm 105 MB/s | 758 kB 00:00 (83/154): libevent-2.1.12-8.fc38.x86_64.rpm 64 MB/s | 257 kB 00:00 (84/154): libffi-3.4.4-3.fc39.x86_64.rpm 13 MB/s | 40 kB 00:00 (85/154): libgcc-13.1.1-4.fc39.x86_64.rpm 38 MB/s | 107 kB 00:00 (86/154): libgomp-13.1.1-4.fc39.x86_64.rpm 83 MB/s | 317 kB 00:00 (87/154): libnghttp2-1.55.1-1.fc39.x86_64.rpm 24 MB/s | 75 kB 00:00 (88/154): libidn2-2.3.4-2.fc38.x86_64.rpm 30 MB/s | 160 kB 00:00 (89/154): libnsl2-2.0.0-5.fc38.x86_64.rpm 13 MB/s | 30 kB 00:00 (90/154): libpkgconf-1.9.5-1.fc39.x86_64.rpm 17 MB/s | 38 kB 00:00 (91/154): libpsl-0.21.2-3.fc39.x86_64.rpm 27 MB/s | 63 kB 00:00 (92/154): libpwquality-1.4.5-5.fc39.x86_64.rpm 46 MB/s | 119 kB 00:00 (93/154): libsemanage-3.5-3.fc39.x86_64.rpm 53 MB/s | 119 kB 00:00 (94/154): libsigsegv-2.14-4.fc38.x86_64.rpm 15 MB/s | 27 kB 00:00 (95/154): libsepol-3.5-1.fc39.x86_64.rpm 82 MB/s | 324 kB 00:00 (96/154): libssh-config-0.10.5-1.fc39.noarch.rp 3.3 MB/s | 9.0 kB 00:00 (97/154): libssh-0.10.5-1.fc39.x86_64.rpm 38 MB/s | 211 kB 00:00 (98/154): libstdc++-13.1.1-4.fc39.x86_64.rpm 135 MB/s | 861 kB 00:00 (99/154): libtasn1-4.19.0-2.fc38.x86_64.rpm 16 MB/s | 74 kB 00:00 (100/154): libtirpc-1.3.3-1.rc1.fc39.x86_64.rpm 21 MB/s | 93 kB 00:00 (101/154): libunistring-1.1-3.fc38.x86_64.rpm 142 MB/s | 545 kB 00:00 (102/154): libunistring1.0-1.0-1.fc38.x86_64.rp 115 MB/s | 539 kB 00:00 (103/154): libutempter-1.2.1-9.fc39.x86_64.rpm 5.2 MB/s | 26 kB 00:00 (104/154): libverto-0.3.2-5.fc38.x86_64.rpm 11 MB/s | 21 kB 00:00 (105/154): libxcrypt-4.4.36-1.fc39.x86_64.rpm 55 MB/s | 119 kB 00:00 (106/154): libzstd-1.5.5-1.fc39.x86_64.rpm 70 MB/s | 308 kB 00:00 (107/154): libxml2-2.10.4-2.fc39.x86_64.rpm 106 MB/s | 701 kB 00:00 (108/154): lua-libs-5.4.4-9.fc39.x86_64.rpm 33 MB/s | 133 kB 00:00 (109/154): lua-srpm-macros-1-8.fc38.noarch.rpm 4.0 MB/s | 8.6 kB 00:00 (110/154): lz4-libs-1.9.4-3.fc39.x86_64.rpm 34 MB/s | 67 kB 00:00 (111/154): ncurses-base-6.4-5.20230520.fc39.noa 29 MB/s | 88 kB 00:00 (112/154): mpfr-4.2.0-2.fc39.x86_64.rpm 74 MB/s | 343 kB 00:00 (113/154): ncurses-libs-6.4-5.20230520.fc39.x86 71 MB/s | 336 kB 00:00 (114/154): ocaml-srpm-macros-8-1.fc39.noarch.rp 5.3 MB/s | 13 kB 00:00 (115/154): openblas-srpm-macros-2-13.fc38.noarc 4.3 MB/s | 7.5 kB 00:00 (116/154): openldap-2.6.4-3.fc39.x86_64.rpm 67 MB/s | 254 kB 00:00 (117/154): p11-kit-0.24.1-6.fc38.x86_64.rpm 58 MB/s | 359 kB 00:00 (118/154): openssl-libs-3.0.8-2.fc39.x86_64.rpm 191 MB/s | 2.1 MB 00:00 (119/154): p11-kit-trust-0.24.1-6.fc38.x86_64.r 18 MB/s | 136 kB 00:00 (120/154): package-notes-srpm-macros-0.5-8.fc39 2.4 MB/s | 11 kB 00:00 (121/154): pam-1.5.3-1.fc39.x86_64.rpm 124 MB/s | 547 kB 00:00 (122/154): pam-libs-1.5.3-1.fc39.x86_64.rpm 14 MB/s | 57 kB 00:00 (123/154): patch-2.7.6-21.fc39.x86_64.rpm 27 MB/s | 126 kB 00:00 (124/154): pcre2-10.42-1.fc38.1.x86_64.rpm 68 MB/s | 234 kB 00:00 (125/154): perl-srpm-macros-1-50.fc39.noarch.rp 2.9 MB/s | 8.3 kB 00:00 (126/154): pcre2-syntax-10.42-1.fc38.1.noarch.r 37 MB/s | 144 kB 00:00 (127/154): pkgconf-m4-1.9.5-1.fc39.noarch.rpm 7.2 MB/s | 14 kB 00:00 (128/154): pkgconf-1.9.5-1.fc39.x86_64.rpm 12 MB/s | 42 kB 00:00 (129/154): pkgconf-pkg-config-1.9.5-1.fc39.x86_ 4.3 MB/s | 9.6 kB 00:00 (130/154): popt-1.19-2.fc38.x86_64.rpm 32 MB/s | 67 kB 00:00 (131/154): publicsuffix-list-dafsa-20230614-1.f 21 MB/s | 57 kB 00:00 (132/154): pyproject-srpm-macros-1.9.0-1.fc39.n 4.6 MB/s | 15 kB 00:00 (133/154): python-srpm-macros-3.12-1.fc39.noarc 10 MB/s | 25 kB 00:00 (134/154): qt5-srpm-macros-5.15.10-1.fc39.noarc 5.5 MB/s | 7.8 kB 00:00 (135/154): qt6-srpm-macros-6.5.1-1.fc39.noarch. 6.6 MB/s | 9.2 kB 00:00 (136/154): redhat-rpm-config-261-1.fc39.noarch. 35 MB/s | 84 kB 00:00 (137/154): readline-8.2-3.fc38.x86_64.rpm 42 MB/s | 212 kB 00:00 (138/154): rpm-sequoia-1.4.1-1.fc39.x86_64.rpm 148 MB/s | 843 kB 00:00 (139/154): rpmautospec-rpm-macros-0.3.5-3.fc39. 2.6 MB/s | 8.7 kB 00:00 (140/154): setup-2.14.3-3.fc39.noarch.rpm 58 MB/s | 152 kB 00:00 (141/154): sed-4.8-12.fc38.x86_64.rpm 58 MB/s | 306 kB 00:00 (142/154): shadow-utils-4.13-7.fc39.x86_64.rpm 152 MB/s | 1.3 MB 00:00 (143/154): sqlite-libs-3.42.0-6.fc39.x86_64.rpm 76 MB/s | 678 kB 00:00 (144/154): systemd-libs-254~rc2-4.fc39.x86_64.r 75 MB/s | 686 kB 00:00 (145/154): tar-1.34-8.fc39.x86_64.rpm 133 MB/s | 888 kB 00:00 (146/154): tzdata-2023c-1.fc39.noarch.rpm 120 MB/s | 718 kB 00:00 (147/154): unzip-6.0-60.fc38.x86_64.rpm 30 MB/s | 184 kB 00:00 (148/154): which-2.21-39.fc39.x86_64.rpm 18 MB/s | 42 kB 00:00 (149/154): xxhash-libs-0.8.1-5.fc39.x86_64.rpm 12 MB/s | 40 kB 00:00 (150/154): xz-libs-5.4.3-1.fc39.x86_64.rpm 27 MB/s | 108 kB 00:00 (151/154): xz-5.4.3-1.fc39.x86_64.rpm 83 MB/s | 555 kB 00:00 (152/154): zip-3.0-36.fc38.x86_64.rpm 55 MB/s | 265 kB 00:00 (153/154): zlib-1.2.13-3.fc38.x86_64.rpm 31 MB/s | 95 kB 00:00 (154/154): zstd-1.5.5-1.fc39.x86_64.rpm 93 MB/s | 482 kB 00:00 -------------------------------------------------------------------------------- Total 87 MB/s | 53 MB 00:00 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary (0x18B8E74C) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-4.fc39.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.1.1-4.fc39.x86_64 1/154 Running scriptlet: libgcc-13.1.1-4.fc39.x86_64 1/154 Installing : crypto-policies-20230614-1.git5f3458e.fc39.noarc 2/154 Running scriptlet: crypto-policies-20230614-1.git5f3458e.fc39.noarc 2/154 Installing : tzdata-2023c-1.fc39.noarch 3/154 Installing : fedora-release-identity-basic-39-0.21.noarch 4/154 Installing : qt6-srpm-macros-6.5.1-1.fc39.noarch 5/154 Installing : qt5-srpm-macros-5.15.10-1.fc39.noarch 6/154 Installing : pyproject-srpm-macros-1.9.0-1.fc39.noarch 7/154 Installing : publicsuffix-list-dafsa-20230614-1.fc39.noarch 8/154 Installing : pkgconf-m4-1.9.5-1.fc39.noarch 9/154 Installing : perl-srpm-macros-1-50.fc39.noarch 10/154 Installing : pcre2-syntax-10.42-1.fc38.1.noarch 11/154 Installing : package-notes-srpm-macros-0.5-8.fc39.noarch 12/154 Installing : openblas-srpm-macros-2-13.fc38.noarch 13/154 Installing : ocaml-srpm-macros-8-1.fc39.noarch 14/154 Installing : ncurses-base-6.4-5.20230520.fc39.noarch 15/154 Installing : libssh-config-0.10.5-1.fc39.noarch 16/154 Installing : kernel-srpm-macros-1.0-19.fc39.noarch 17/154 Installing : gnat-srpm-macros-6-2.fc38.noarch 18/154 Installing : ghc-srpm-macros-1.6.1-1.fc38.noarch 19/154 Installing : fpc-srpm-macros-1.3-7.fc38.noarch 20/154 Installing : fedora-gpg-keys-39-0.3.noarch 21/154 Installing : fedora-release-39-0.21.noarch 22/154 Installing : fedora-release-common-39-0.21.noarch 23/154 Installing : fedora-repos-rawhide-39-0.3.noarch 24/154 Installing : fedora-repos-39-0.3.noarch 25/154 Installing : setup-2.14.3-3.fc39.noarch 26/154 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.3-3.fc39.noarch 26/154 Installing : filesystem-3.18-4.fc39.x86_64 27/154 Installing : basesystem-11-17.fc39.noarch 28/154 Installing : glibc-gconv-extra-2.37.9000-17.fc39.x86_64 29/154 Running scriptlet: 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elfutils-default-yama-scope-0.189-3.fc39.noarch 84/154 Installing : cpio-2.14-2.fc39.x86_64 85/154 Installing : diffutils-3.10-2.fc39.x86_64 86/154 Installing : gdbm-libs-1:1.23-3.fc38.x86_64 87/154 Installing : cyrus-sasl-lib-2.1.28-10.fc39.x86_64 88/154 Installing : keyutils-libs-1.6.1-6.fc38.x86_64 89/154 Installing : libbrotli-1.0.9-12.fc39.x86_64 90/154 Installing : libdb-5.3.28-55.fc38.x86_64 91/154 Installing : libeconf-0.4.0-5.fc38.x86_64 92/154 Installing : shadow-utils-2:4.13-7.fc39.x86_64 93/154 Running scriptlet: libutempter-1.2.1-9.fc39.x86_64 94/154 Installing : libutempter-1.2.1-9.fc39.x86_64 94/154 Installing : libffi-3.4.4-3.fc39.x86_64 95/154 Installing : p11-kit-0.24.1-6.fc38.x86_64 96/154 Installing : libgomp-13.1.1-4.fc39.x86_64 97/154 Installing : libnghttp2-1.55.1-1.fc39.x86_64 98/154 Installing : libpkgconf-1.9.5-1.fc39.x86_64 99/154 Installing : pkgconf-1.9.5-1.fc39.x86_64 100/154 Installing : pkgconf-pkg-config-1.9.5-1.fc39.x86_64 101/154 Installing : 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rpm-build-4.18.91-7.fc39.x86_64 151/154 Installing : util-linux-2.39.1-2.fc39.x86_64 152/154 Installing : which-2.21-39.fc39.x86_64 153/154 Installing : info-7.0.3-2.fc39.x86_64 154/154 Running scriptlet: filesystem-3.18-4.fc39.x86_64 154/154 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 154/154 Running scriptlet: authselect-libs-1.4.2-2.fc38.x86_64 154/154 Running scriptlet: rpm-4.18.91-7.fc39.x86_64 154/154 Running scriptlet: info-7.0.3-2.fc39.x86_64 154/154 Verifying : audit-libs-3.1.1-4.fc39.x86_64 1/154 Verifying : libblkid-2.39.1-2.fc39.x86_64 2/154 Verifying : libfdisk-2.39.1-2.fc39.x86_64 3/154 Verifying : libmount-2.39.1-2.fc39.x86_64 4/154 Verifying : libselinux-3.5-4.fc39.x86_64 5/154 Verifying : libsmartcols-2.39.1-2.fc39.x86_64 6/154 Verifying : libuuid-2.39.1-2.fc39.x86_64 7/154 Verifying : rpm-4.18.91-7.fc39.x86_64 8/154 Verifying : rpm-build-4.18.91-7.fc39.x86_64 9/154 Verifying : rpm-build-libs-4.18.91-7.fc39.x86_64 10/154 Verifying : rpm-libs-4.18.91-7.fc39.x86_64 11/154 Verifying : rust-srpm-macros-24-2.fc39.noarch 12/154 Verifying : util-linux-2.39.1-2.fc39.x86_64 13/154 Verifying : util-linux-core-2.39.1-2.fc39.x86_64 14/154 Verifying : alternatives-1.24-1.fc39.x86_64 15/154 Verifying : ansible-srpm-macros-1-10.fc39.noarch 16/154 Verifying : authselect-1.4.2-2.fc38.x86_64 17/154 Verifying : authselect-libs-1.4.2-2.fc38.x86_64 18/154 Verifying : basesystem-11-17.fc39.noarch 19/154 Verifying : bash-5.2.15-3.fc38.x86_64 20/154 Verifying : binutils-2.40-9.fc39.x86_64 21/154 Verifying : binutils-gold-2.40-9.fc39.x86_64 22/154 Verifying : bzip2-1.0.8-13.fc38.x86_64 23/154 Verifying : bzip2-libs-1.0.8-13.fc38.x86_64 24/154 Verifying : ca-certificates-2023.2.60-2.fc38.noarch 25/154 Verifying : coreutils-9.3-1.fc39.x86_64 26/154 Verifying : coreutils-common-9.3-1.fc39.x86_64 27/154 Verifying : cpio-2.14-2.fc39.x86_64 28/154 Verifying : cracklib-2.9.11-1.fc39.x86_64 29/154 Verifying : crypto-policies-20230614-1.git5f3458e.fc39.noarc 30/154 Verifying : curl-8.1.2-1.fc39.x86_64 31/154 Verifying : cyrus-sasl-lib-2.1.28-10.fc39.x86_64 32/154 Verifying : debugedit-5.0-9.fc39.x86_64 33/154 Verifying : diffutils-3.10-2.fc39.x86_64 34/154 Verifying : dwz-0.15-2.fc38.x86_64 35/154 Verifying : ed-1.19-2.fc38.x86_64 36/154 Verifying : efi-srpm-macros-5-8.fc39.noarch 37/154 Verifying : elfutils-0.189-3.fc39.x86_64 38/154 Verifying : elfutils-debuginfod-client-0.189-3.fc39.x86_64 39/154 Verifying : elfutils-default-yama-scope-0.189-3.fc39.noarch 40/154 Verifying : elfutils-libelf-0.189-3.fc39.x86_64 41/154 Verifying : elfutils-libs-0.189-3.fc39.x86_64 42/154 Verifying : fedora-gpg-keys-39-0.3.noarch 43/154 Verifying : fedora-release-39-0.21.noarch 44/154 Verifying : fedora-release-common-39-0.21.noarch 45/154 Verifying : fedora-release-identity-basic-39-0.21.noarch 46/154 Verifying : fedora-repos-39-0.3.noarch 47/154 Verifying : fedora-repos-rawhide-39-0.3.noarch 48/154 Verifying : file-5.44-4.fc39.x86_64 49/154 Verifying : file-libs-5.44-4.fc39.x86_64 50/154 Verifying : filesystem-3.18-4.fc39.x86_64 51/154 Verifying : findutils-1:4.9.0-4.fc39.x86_64 52/154 Verifying : fonts-srpm-macros-1:2.0.5-11.fc38.noarch 53/154 Verifying : fpc-srpm-macros-1.3-7.fc38.noarch 54/154 Verifying : gawk-5.2.2-1.fc39.x86_64 55/154 Verifying : gdb-minimal-13.2-5.fc39.x86_64 56/154 Verifying : gdbm-libs-1:1.23-3.fc38.x86_64 57/154 Verifying : ghc-srpm-macros-1.6.1-1.fc38.noarch 58/154 Verifying : glibc-2.37.9000-17.fc39.x86_64 59/154 Verifying : glibc-common-2.37.9000-17.fc39.x86_64 60/154 Verifying : glibc-gconv-extra-2.37.9000-17.fc39.x86_64 61/154 Verifying : glibc-minimal-langpack-2.37.9000-17.fc39.x86_64 62/154 Verifying : gmp-1:6.2.1-4.fc38.x86_64 63/154 Verifying : gnat-srpm-macros-6-2.fc38.noarch 64/154 Verifying : go-srpm-macros-3.2.0-3.fc39.noarch 65/154 Verifying : grep-3.11-1.fc39.x86_64 66/154 Verifying : gzip-1.12-3.fc38.x86_64 67/154 Verifying : info-7.0.3-2.fc39.x86_64 68/154 Verifying : jansson-2.13.1-6.fc38.x86_64 69/154 Verifying : kernel-srpm-macros-1.0-19.fc39.noarch 70/154 Verifying : keyutils-libs-1.6.1-6.fc38.x86_64 71/154 Verifying : krb5-libs-1.21-1.fc39.x86_64 72/154 Verifying : libacl-2.3.1-7.fc39.x86_64 73/154 Verifying : libarchive-3.6.1-5.fc39.x86_64 74/154 Verifying : libattr-2.5.1-7.fc39.x86_64 75/154 Verifying : libbrotli-1.0.9-12.fc39.x86_64 76/154 Verifying : libcap-2.48-6.fc38.x86_64 77/154 Verifying : libcap-ng-0.8.3-6.fc39.x86_64 78/154 Verifying : libcom_err-1.47.0-1.fc39.x86_64 79/154 Verifying : libcurl-8.1.2-1.fc39.x86_64 80/154 Verifying : libdb-5.3.28-55.fc38.x86_64 81/154 Verifying : libeconf-0.4.0-5.fc38.x86_64 82/154 Verifying : libevent-2.1.12-8.fc38.x86_64 83/154 Verifying : libffi-3.4.4-3.fc39.x86_64 84/154 Verifying : libgcc-13.1.1-4.fc39.x86_64 85/154 Verifying : libgomp-13.1.1-4.fc39.x86_64 86/154 Verifying : libidn2-2.3.4-2.fc38.x86_64 87/154 Verifying : libnghttp2-1.55.1-1.fc39.x86_64 88/154 Verifying : libnsl2-2.0.0-5.fc38.x86_64 89/154 Verifying : libpkgconf-1.9.5-1.fc39.x86_64 90/154 Verifying : libpsl-0.21.2-3.fc39.x86_64 91/154 Verifying : libpwquality-1.4.5-5.fc39.x86_64 92/154 Verifying : libsemanage-3.5-3.fc39.x86_64 93/154 Verifying : libsepol-3.5-1.fc39.x86_64 94/154 Verifying : libsigsegv-2.14-4.fc38.x86_64 95/154 Verifying : libssh-0.10.5-1.fc39.x86_64 96/154 Verifying : libssh-config-0.10.5-1.fc39.noarch 97/154 Verifying : libstdc++-13.1.1-4.fc39.x86_64 98/154 Verifying : libtasn1-4.19.0-2.fc38.x86_64 99/154 Verifying : libtirpc-1.3.3-1.rc1.fc39.x86_64 100/154 Verifying : libunistring-1.1-3.fc38.x86_64 101/154 Verifying : libunistring1.0-1.0-1.fc38.x86_64 102/154 Verifying : libutempter-1.2.1-9.fc39.x86_64 103/154 Verifying : libverto-0.3.2-5.fc38.x86_64 104/154 Verifying : libxcrypt-4.4.36-1.fc39.x86_64 105/154 Verifying : libxml2-2.10.4-2.fc39.x86_64 106/154 Verifying : libzstd-1.5.5-1.fc39.x86_64 107/154 Verifying : lua-libs-5.4.4-9.fc39.x86_64 108/154 Verifying : lua-srpm-macros-1-8.fc38.noarch 109/154 Verifying : lz4-libs-1.9.4-3.fc39.x86_64 110/154 Verifying : mpfr-4.2.0-2.fc39.x86_64 111/154 Verifying : ncurses-base-6.4-5.20230520.fc39.noarch 112/154 Verifying : ncurses-libs-6.4-5.20230520.fc39.x86_64 113/154 Verifying : ocaml-srpm-macros-8-1.fc39.noarch 114/154 Verifying : openblas-srpm-macros-2-13.fc38.noarch 115/154 Verifying : openldap-2.6.4-3.fc39.x86_64 116/154 Verifying : openssl-libs-1:3.0.8-2.fc39.x86_64 117/154 Verifying : p11-kit-0.24.1-6.fc38.x86_64 118/154 Verifying : p11-kit-trust-0.24.1-6.fc38.x86_64 119/154 Verifying : package-notes-srpm-macros-0.5-8.fc39.noarch 120/154 Verifying : pam-1.5.3-1.fc39.x86_64 121/154 Verifying : pam-libs-1.5.3-1.fc39.x86_64 122/154 Verifying : patch-2.7.6-21.fc39.x86_64 123/154 Verifying : pcre2-10.42-1.fc38.1.x86_64 124/154 Verifying : pcre2-syntax-10.42-1.fc38.1.noarch 125/154 Verifying : perl-srpm-macros-1-50.fc39.noarch 126/154 Verifying : pkgconf-1.9.5-1.fc39.x86_64 127/154 Verifying : pkgconf-m4-1.9.5-1.fc39.noarch 128/154 Verifying : pkgconf-pkg-config-1.9.5-1.fc39.x86_64 129/154 Verifying : popt-1.19-2.fc38.x86_64 130/154 Verifying : publicsuffix-list-dafsa-20230614-1.fc39.noarch 131/154 Verifying : pyproject-srpm-macros-1.9.0-1.fc39.noarch 132/154 Verifying : python-srpm-macros-3.12-1.fc39.noarch 133/154 Verifying : qt5-srpm-macros-5.15.10-1.fc39.noarch 134/154 Verifying : qt6-srpm-macros-6.5.1-1.fc39.noarch 135/154 Verifying : readline-8.2-3.fc38.x86_64 136/154 Verifying : redhat-rpm-config-261-1.fc39.noarch 137/154 Verifying : rpm-sequoia-1.4.1-1.fc39.x86_64 138/154 Verifying : rpmautospec-rpm-macros-0.3.5-3.fc39.noarch 139/154 Verifying : sed-4.8-12.fc38.x86_64 140/154 Verifying : setup-2.14.3-3.fc39.noarch 141/154 Verifying : shadow-utils-2:4.13-7.fc39.x86_64 142/154 Verifying : sqlite-libs-3.42.0-6.fc39.x86_64 143/154 Verifying : systemd-libs-254~rc2-4.fc39.x86_64 144/154 Verifying : tar-2:1.34-8.fc39.x86_64 145/154 Verifying : tzdata-2023c-1.fc39.noarch 146/154 Verifying : unzip-6.0-60.fc38.x86_64 147/154 Verifying : which-2.21-39.fc39.x86_64 148/154 Verifying : xxhash-libs-0.8.1-5.fc39.x86_64 149/154 Verifying : xz-5.4.3-1.fc39.x86_64 150/154 Verifying : xz-libs-5.4.3-1.fc39.x86_64 151/154 Verifying : zip-3.0-36.fc38.x86_64 152/154 Verifying : zlib-1.2.13-3.fc38.x86_64 153/154 Verifying : zstd-1.5.5-1.fc39.x86_64 154/154 Installed: alternatives-1.24-1.fc39.x86_64 ansible-srpm-macros-1-10.fc39.noarch audit-libs-3.1.1-4.fc39.x86_64 authselect-1.4.2-2.fc38.x86_64 authselect-libs-1.4.2-2.fc38.x86_64 basesystem-11-17.fc39.noarch bash-5.2.15-3.fc38.x86_64 binutils-2.40-9.fc39.x86_64 binutils-gold-2.40-9.fc39.x86_64 bzip2-1.0.8-13.fc38.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 ca-certificates-2023.2.60-2.fc38.noarch coreutils-9.3-1.fc39.x86_64 coreutils-common-9.3-1.fc39.x86_64 cpio-2.14-2.fc39.x86_64 cracklib-2.9.11-1.fc39.x86_64 crypto-policies-20230614-1.git5f3458e.fc39.noarch curl-8.1.2-1.fc39.x86_64 cyrus-sasl-lib-2.1.28-10.fc39.x86_64 debugedit-5.0-9.fc39.x86_64 diffutils-3.10-2.fc39.x86_64 dwz-0.15-2.fc38.x86_64 ed-1.19-2.fc38.x86_64 efi-srpm-macros-5-8.fc39.noarch elfutils-0.189-3.fc39.x86_64 elfutils-debuginfod-client-0.189-3.fc39.x86_64 elfutils-default-yama-scope-0.189-3.fc39.noarch elfutils-libelf-0.189-3.fc39.x86_64 elfutils-libs-0.189-3.fc39.x86_64 fedora-gpg-keys-39-0.3.noarch fedora-release-39-0.21.noarch fedora-release-common-39-0.21.noarch fedora-release-identity-basic-39-0.21.noarch fedora-repos-39-0.3.noarch fedora-repos-rawhide-39-0.3.noarch file-5.44-4.fc39.x86_64 file-libs-5.44-4.fc39.x86_64 filesystem-3.18-4.fc39.x86_64 findutils-1:4.9.0-4.fc39.x86_64 fonts-srpm-macros-1:2.0.5-11.fc38.noarch fpc-srpm-macros-1.3-7.fc38.noarch gawk-5.2.2-1.fc39.x86_64 gdb-minimal-13.2-5.fc39.x86_64 gdbm-libs-1:1.23-3.fc38.x86_64 ghc-srpm-macros-1.6.1-1.fc38.noarch glibc-2.37.9000-17.fc39.x86_64 glibc-common-2.37.9000-17.fc39.x86_64 glibc-gconv-extra-2.37.9000-17.fc39.x86_64 glibc-minimal-langpack-2.37.9000-17.fc39.x86_64 gmp-1:6.2.1-4.fc38.x86_64 gnat-srpm-macros-6-2.fc38.noarch go-srpm-macros-3.2.0-3.fc39.noarch grep-3.11-1.fc39.x86_64 gzip-1.12-3.fc38.x86_64 info-7.0.3-2.fc39.x86_64 jansson-2.13.1-6.fc38.x86_64 kernel-srpm-macros-1.0-19.fc39.noarch keyutils-libs-1.6.1-6.fc38.x86_64 krb5-libs-1.21-1.fc39.x86_64 libacl-2.3.1-7.fc39.x86_64 libarchive-3.6.1-5.fc39.x86_64 libattr-2.5.1-7.fc39.x86_64 libblkid-2.39.1-2.fc39.x86_64 libbrotli-1.0.9-12.fc39.x86_64 libcap-2.48-6.fc38.x86_64 libcap-ng-0.8.3-6.fc39.x86_64 libcom_err-1.47.0-1.fc39.x86_64 libcurl-8.1.2-1.fc39.x86_64 libdb-5.3.28-55.fc38.x86_64 libeconf-0.4.0-5.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libfdisk-2.39.1-2.fc39.x86_64 libffi-3.4.4-3.fc39.x86_64 libgcc-13.1.1-4.fc39.x86_64 libgomp-13.1.1-4.fc39.x86_64 libidn2-2.3.4-2.fc38.x86_64 libmount-2.39.1-2.fc39.x86_64 libnghttp2-1.55.1-1.fc39.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libpkgconf-1.9.5-1.fc39.x86_64 libpsl-0.21.2-3.fc39.x86_64 libpwquality-1.4.5-5.fc39.x86_64 libselinux-3.5-4.fc39.x86_64 libsemanage-3.5-3.fc39.x86_64 libsepol-3.5-1.fc39.x86_64 libsigsegv-2.14-4.fc38.x86_64 libsmartcols-2.39.1-2.fc39.x86_64 libssh-0.10.5-1.fc39.x86_64 libssh-config-0.10.5-1.fc39.noarch libstdc++-13.1.1-4.fc39.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libtirpc-1.3.3-1.rc1.fc39.x86_64 libunistring-1.1-3.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libutempter-1.2.1-9.fc39.x86_64 libuuid-2.39.1-2.fc39.x86_64 libverto-0.3.2-5.fc38.x86_64 libxcrypt-4.4.36-1.fc39.x86_64 libxml2-2.10.4-2.fc39.x86_64 libzstd-1.5.5-1.fc39.x86_64 lua-libs-5.4.4-9.fc39.x86_64 lua-srpm-macros-1-8.fc38.noarch lz4-libs-1.9.4-3.fc39.x86_64 mpfr-4.2.0-2.fc39.x86_64 ncurses-base-6.4-5.20230520.fc39.noarch ncurses-libs-6.4-5.20230520.fc39.x86_64 ocaml-srpm-macros-8-1.fc39.noarch openblas-srpm-macros-2-13.fc38.noarch openldap-2.6.4-3.fc39.x86_64 openssl-libs-1:3.0.8-2.fc39.x86_64 p11-kit-0.24.1-6.fc38.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 package-notes-srpm-macros-0.5-8.fc39.noarch pam-1.5.3-1.fc39.x86_64 pam-libs-1.5.3-1.fc39.x86_64 patch-2.7.6-21.fc39.x86_64 pcre2-10.42-1.fc38.1.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch perl-srpm-macros-1-50.fc39.noarch pkgconf-1.9.5-1.fc39.x86_64 pkgconf-m4-1.9.5-1.fc39.noarch pkgconf-pkg-config-1.9.5-1.fc39.x86_64 popt-1.19-2.fc38.x86_64 publicsuffix-list-dafsa-20230614-1.fc39.noarch pyproject-srpm-macros-1.9.0-1.fc39.noarch python-srpm-macros-3.12-1.fc39.noarch qt5-srpm-macros-5.15.10-1.fc39.noarch qt6-srpm-macros-6.5.1-1.fc39.noarch readline-8.2-3.fc38.x86_64 redhat-rpm-config-261-1.fc39.noarch rpm-4.18.91-7.fc39.x86_64 rpm-build-4.18.91-7.fc39.x86_64 rpm-build-libs-4.18.91-7.fc39.x86_64 rpm-libs-4.18.91-7.fc39.x86_64 rpm-sequoia-1.4.1-1.fc39.x86_64 rpmautospec-rpm-macros-0.3.5-3.fc39.noarch rust-srpm-macros-24-2.fc39.noarch sed-4.8-12.fc38.x86_64 setup-2.14.3-3.fc39.noarch shadow-utils-2:4.13-7.fc39.x86_64 sqlite-libs-3.42.0-6.fc39.x86_64 systemd-libs-254~rc2-4.fc39.x86_64 tar-2:1.34-8.fc39.x86_64 tzdata-2023c-1.fc39.noarch unzip-6.0-60.fc38.x86_64 util-linux-2.39.1-2.fc39.x86_64 util-linux-core-2.39.1-2.fc39.x86_64 which-2.21-39.fc39.x86_64 xxhash-libs-0.8.1-5.fc39.x86_64 xz-5.4.3-1.fc39.x86_64 xz-libs-5.4.3-1.fc39.x86_64 zip-3.0-36.fc38.x86_64 zlib-1.2.13-3.fc38.x86_64 zstd-1.5.5-1.fc39.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: gmp-6.2.1-4.fc38.x86_64 pkgconf-1.9.5-1.fc39.x86_64 libselinux-3.5-4.fc39.x86_64 libssh-0.10.5-1.fc39.x86_64 libblkid-2.39.1-2.fc39.x86_64 shadow-utils-4.13-7.fc39.x86_64 patch-2.7.6-21.fc39.x86_64 rpm-4.18.91-7.fc39.x86_64 rpm-sequoia-1.4.1-1.fc39.x86_64 python-srpm-macros-3.12-1.fc39.noarch lz4-libs-1.9.4-3.fc39.x86_64 ansible-srpm-macros-1-10.fc39.noarch unzip-6.0-60.fc38.x86_64 info-7.0.3-2.fc39.x86_64 file-libs-5.44-4.fc39.x86_64 libxml2-2.10.4-2.fc39.x86_64 debugedit-5.0-9.fc39.x86_64 elfutils-default-yama-scope-0.189-3.fc39.noarch tzdata-2023c-1.fc39.noarch fedora-release-common-39-0.21.noarch coreutils-9.3-1.fc39.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libattr-2.5.1-7.fc39.x86_64 qt5-srpm-macros-5.15.10-1.fc39.noarch fedora-release-identity-basic-39-0.21.noarch glibc-2.37.9000-17.fc39.x86_64 rpm-build-libs-4.18.91-7.fc39.x86_64 qt6-srpm-macros-6.5.1-1.fc39.noarch libssh-config-0.10.5-1.fc39.noarch libcap-ng-0.8.3-6.fc39.x86_64 grep-3.11-1.fc39.x86_64 libcurl-8.1.2-1.fc39.x86_64 publicsuffix-list-dafsa-20230614-1.fc39.noarch findutils-4.9.0-4.fc39.x86_64 xz-5.4.3-1.fc39.x86_64 gdb-minimal-13.2-5.fc39.x86_64 libmount-2.39.1-2.fc39.x86_64 zstd-1.5.5-1.fc39.x86_64 libstdc++-13.1.1-4.fc39.x86_64 elfutils-0.189-3.fc39.x86_64 perl-srpm-macros-1-50.fc39.noarch ocaml-srpm-macros-8-1.fc39.noarch libsemanage-3.5-3.fc39.x86_64 lua-srpm-macros-1-8.fc38.noarch openblas-srpm-macros-2-13.fc38.noarch crypto-policies-20230614-1.git5f3458e.fc39.noarch gawk-5.2.2-1.fc39.x86_64 binutils-2.40-9.fc39.x86_64 go-srpm-macros-3.2.0-3.fc39.noarch fedora-repos-rawhide-39-0.3.noarch libnsl2-2.0.0-5.fc38.x86_64 xz-libs-5.4.3-1.fc39.x86_64 libacl-2.3.1-7.fc39.x86_64 libcap-2.48-6.fc38.x86_64 keyutils-libs-1.6.1-6.fc38.x86_64 rpm-libs-4.18.91-7.fc39.x86_64 gnat-srpm-macros-6-2.fc38.noarch jansson-2.13.1-6.fc38.x86_64 libbrotli-1.0.9-12.fc39.x86_64 libeconf-0.4.0-5.fc38.x86_64 cyrus-sasl-lib-2.1.28-10.fc39.x86_64 libunistring-1.1-3.fc38.x86_64 bzip2-libs-1.0.8-13.fc38.x86_64 fpc-srpm-macros-1.3-7.fc38.noarch cracklib-2.9.11-1.fc39.x86_64 redhat-rpm-config-261-1.fc39.noarch ncurses-base-6.4-5.20230520.fc39.noarch bash-5.2.15-3.fc38.x86_64 diffutils-3.10-2.fc39.x86_64 authselect-1.4.2-2.fc38.x86_64 libpsl-0.21.2-3.fc39.x86_64 gpg-pubkey-18b8e74c-62f2920f glibc-gconv-extra-2.37.9000-17.fc39.x86_64 systemd-libs-254~rc2-4.fc39.x86_64 pkgconf-m4-1.9.5-1.fc39.noarch openldap-2.6.4-3.fc39.x86_64 file-5.44-4.fc39.x86_64 libpwquality-1.4.5-5.fc39.x86_64 libgcc-13.1.1-4.fc39.x86_64 efi-srpm-macros-5-8.fc39.noarch cpio-2.14-2.fc39.x86_64 pam-1.5.3-1.fc39.x86_64 libxcrypt-4.4.36-1.fc39.x86_64 which-2.21-39.fc39.x86_64 libsigsegv-2.14-4.fc38.x86_64 krb5-libs-1.21-1.fc39.x86_64 dwz-0.15-2.fc38.x86_64 filesystem-3.18-4.fc39.x86_64 pcre2-10.42-1.fc38.1.x86_64 libevent-2.1.12-8.fc38.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 alternatives-1.24-1.fc39.x86_64 libfdisk-2.39.1-2.fc39.x86_64 sqlite-libs-3.42.0-6.fc39.x86_64 zlib-1.2.13-3.fc38.x86_64 zip-3.0-36.fc38.x86_64 kernel-srpm-macros-1.0-19.fc39.noarch rpm-build-4.18.91-7.fc39.x86_64 libtirpc-1.3.3-1.rc1.fc39.x86_64 libsmartcols-2.39.1-2.fc39.x86_64 libffi-3.4.4-3.fc39.x86_64 pam-libs-1.5.3-1.fc39.x86_64 ncurses-libs-6.4-5.20230520.fc39.x86_64 binutils-gold-2.40-9.fc39.x86_64 rpmautospec-rpm-macros-0.3.5-3.fc39.noarch libuuid-2.39.1-2.fc39.x86_64 gdbm-libs-1.23-3.fc38.x86_64 pyproject-srpm-macros-1.9.0-1.fc39.noarch libgomp-13.1.1-4.fc39.x86_64 gpg-pubkey-eb10b464-6202d9c6 readline-8.2-3.fc38.x86_64 xxhash-libs-0.8.1-5.fc39.x86_64 util-linux-core-2.39.1-2.fc39.x86_64 libutempter-1.2.1-9.fc39.x86_64 elfutils-libs-0.189-3.fc39.x86_64 mpfr-4.2.0-2.fc39.x86_64 elfutils-debuginfod-client-0.189-3.fc39.x86_64 pkgconf-pkg-config-1.9.5-1.fc39.x86_64 package-notes-srpm-macros-0.5-8.fc39.noarch gzip-1.12-3.fc38.x86_64 sed-4.8-12.fc38.x86_64 basesystem-11-17.fc39.noarch bzip2-1.0.8-13.fc38.x86_64 glibc-common-2.37.9000-17.fc39.x86_64 libzstd-1.5.5-1.fc39.x86_64 fedora-release-39-0.21.noarch tar-1.34-8.fc39.x86_64 curl-8.1.2-1.fc39.x86_64 ca-certificates-2023.2.60-2.fc38.noarch libcom_err-1.47.0-1.fc39.x86_64 popt-1.19-2.fc38.x86_64 util-linux-2.39.1-2.fc39.x86_64 audit-libs-3.1.1-4.fc39.x86_64 openssl-libs-3.0.8-2.fc39.x86_64 fedora-gpg-keys-39-0.3.noarch elfutils-libelf-0.189-3.fc39.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch fedora-repos-39-0.3.noarch setup-2.14.3-3.fc39.noarch lua-libs-5.4.4-9.fc39.x86_64 libidn2-2.3.4-2.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 p11-kit-0.24.1-6.fc38.x86_64 libpkgconf-1.9.5-1.fc39.x86_64 fonts-srpm-macros-2.0.5-11.fc38.noarch libdb-5.3.28-55.fc38.x86_64 ghc-srpm-macros-1.6.1-1.fc38.noarch authselect-libs-1.4.2-2.fc38.x86_64 glibc-minimal-langpack-2.37.9000-17.fc39.x86_64 ed-1.19-2.fc38.x86_64 rust-srpm-macros-24-2.fc39.noarch libsepol-3.5-1.fc39.x86_64 libnghttp2-1.55.1-1.fc39.x86_64 coreutils-common-9.3-1.fc39.x86_64 libverto-0.3.2-5.fc38.x86_64 libarchive-3.6.1-5.fc39.x86_64 Start: buildsrpm Start: rpmbuild -bs warning: %patchN is deprecated (3 usages found), use %patch N (or %patch -P N) Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689724800 Wrote: /builddir/build/SRPMS/avogadro2-libs-1.97.0-5.fc39.src.rpm RPM build warnings: %patchN is deprecated (3 usages found), use %patch N (or %patch -P N) Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1689776071.383479/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1689776071.383479/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1689776071.383479/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-rrqd87mk/avogadro2-libs/avogadro2-libs.spec) Config(child) 1 minutes 11 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/avogadro2-libs-1.97.0-5.fc39.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1689776071.383479 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 4.1 starting (python version = 3.11.3, NVR = mock-4.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/avogadro2-libs-1.97.0-5.fc39.src.rpm) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1689776071.383479/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1689776071.383479/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (fallback) Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1689776071.383479/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (direct choice) Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 61 kB/s | 2.2 kB 00:00 Copr repository 82 MB/s | 14 MB 00:00 fedora 62 kB/s | 20 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for avogadro2-libs-1.97.0-5.fc39.src.rpm Start: build setup for avogadro2-libs-1.97.0-5.fc39.src.rpm warning: %patchN is deprecated (3 usages found), use %patch N (or %patch -P N) Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689724800 Wrote: /builddir/build/SRPMS/avogadro2-libs-1.97.0-5.fc39.src.rpm RPM build warnings: %patchN is deprecated (3 usages found), use %patch N (or %patch -P N) No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 78 kB/s | 2.2 kB 00:00 fedora 456 kB/s | 20 kB 00:00 Dependencies resolved. =========================================================================================== Package Arch Version Repo Size =========================================================================================== Installing: boost-devel x86_64 1.81.0-5.fc39 fedora 14 M chrpath x86_64 0.16-19.fc38 fedora 30 k cmake x86_64 3.27.0~rc5-1.fc39 fedora 8.0 M doxygen x86_64 2:1.9.7-2.fc39 fedora 5.0 M eigen3-devel noarch 3.4.0-10.fc39 fedora 1.2 M gcc x86_64 13.1.1-4.fc39 fedora 34 M gcc-c++ x86_64 13.1.1-4.fc39 fedora 13 M glew-devel x86_64 2.2.0-4.fc38 fedora 222 k graphviz x86_64 8.1.0-4.fc39 copr_base 5.0 M hdf5-devel x86_64 1.12.1-12.fc39 fedora 1.3 M jsoncpp-devel x86_64 1.9.5-4.fc38 fedora 29 k libarchive-devel x86_64 3.6.1-5.fc39 fedora 134 k make x86_64 1:4.4.1-1.fc39 fedora 589 k mesa-libGLU-devel x86_64 9.0.1-8.fc38 fedora 13 k mmtf-cpp-devel x86_64 1.1.0-2.fc38 fedora 30 k openbabel-devel x86_64 3.1.1-20.fc39 copr_base 192 k python3-devel x86_64 3.12.0~b4-1.fc39 fedora 310 k qt5-qtbase-devel x86_64 5.15.10-2.fc39 fedora 3.5 M qt5-qtsvg-devel x86_64 5.15.10-1.fc39 fedora 32 k qt5-qttools-devel x86_64 5.15.10-2.fc39 fedora 228 k spglib-devel x86_64 2.0.2-2.fc39 fedora 14 k Installing dependencies: adobe-mappings-cmap noarch 20230118-1.fc38 fedora 2.1 M adobe-mappings-cmap-deprecated noarch 20230118-1.fc38 fedora 113 k adobe-mappings-pdf noarch 20190401-3.fc38 fedora 698 k annobin-docs noarch 12.21-1.fc39 fedora 95 k annobin-plugin-gcc x86_64 12.21-1.fc39 fedora 959 k avahi-libs x86_64 0.8-23.fc39 fedora 67 k boost x86_64 1.81.0-5.fc39 fedora 14 k boost-atomic x86_64 1.81.0-5.fc39 fedora 20 k boost-chrono x86_64 1.81.0-5.fc39 fedora 26 k boost-container x86_64 1.81.0-5.fc39 fedora 40 k boost-context x86_64 1.81.0-5.fc39 fedora 17 k boost-contract x86_64 1.81.0-5.fc39 fedora 46 k boost-coroutine x86_64 1.81.0-5.fc39 fedora 20 k boost-date-time x86_64 1.81.0-5.fc39 fedora 16 k boost-fiber x86_64 1.81.0-5.fc39 fedora 42 k boost-filesystem x86_64 1.81.0-5.fc39 fedora 68 k boost-graph x86_64 1.81.0-5.fc39 fedora 153 k boost-iostreams x86_64 1.81.0-5.fc39 fedora 42 k boost-json x86_64 1.81.0-5.fc39 fedora 110 k boost-locale x86_64 1.81.0-5.fc39 fedora 222 k boost-log x86_64 1.81.0-5.fc39 fedora 493 k boost-math x86_64 1.81.0-5.fc39 fedora 219 k boost-nowide x86_64 1.81.0-5.fc39 fedora 21 k boost-numpy3 x86_64 1.81.0-5.fc39 fedora 30 k boost-program-options x86_64 1.81.0-5.fc39 fedora 110 k boost-python3 x86_64 1.81.0-5.fc39 fedora 97 k boost-random x86_64 1.81.0-5.fc39 fedora 24 k boost-regex x86_64 1.81.0-5.fc39 fedora 112 k boost-serialization x86_64 1.81.0-5.fc39 fedora 135 k boost-stacktrace x86_64 1.81.0-5.fc39 fedora 30 k boost-system x86_64 1.81.0-5.fc39 fedora 16 k boost-test x86_64 1.81.0-5.fc39 fedora 241 k boost-thread x86_64 1.81.0-5.fc39 fedora 59 k boost-timer x86_64 1.81.0-5.fc39 fedora 24 k boost-type_erasure x86_64 1.81.0-5.fc39 fedora 34 k boost-wave x86_64 1.81.0-5.fc39 fedora 225 k cairo x86_64 1.17.8-4.fc39 fedora 706 k cairo-gobject x86_64 1.17.8-4.fc39 fedora 18 k clang-libs x86_64 16.0.6-2.fc39 fedora 22 M clang-resource-filesystem x86_64 16.0.6-2.fc39 fedora 13 k cmake-data noarch 3.27.0~rc5-1.fc39 fedora 2.2 M cmake-filesystem x86_64 3.27.0~rc5-1.fc39 fedora 18 k cmake-rpm-macros noarch 3.27.0~rc5-1.fc39 fedora 17 k cpp x86_64 13.1.1-4.fc39 fedora 11 M crypto-policies-scripts noarch 20230614-1.git5f3458e.fc39 fedora 116 k cups-libs x86_64 1:2.4.6-1.fc39 fedora 266 k dbus-libs x86_64 1:1.14.8-1.fc39 fedora 156 k double-conversion x86_64 3.1.5-8.fc38 fedora 49 k duktape x86_64 2.7.0-4.fc39 fedora 170 k emacs-filesystem noarch 1:28.2-6.fc39 fedora 7.8 k expat x86_64 2.5.0-2.fc38 fedora 110 k flexiblas x86_64 3.3.1-3.fc39 fedora 33 k flexiblas-netlib x86_64 3.3.1-3.fc39 fedora 3.1 M flexiblas-openblas-openmp x86_64 3.3.1-3.fc39 fedora 17 k fontconfig x86_64 2.14.2-3.fc39 fedora 296 k fonts-filesystem noarch 1:2.0.5-11.fc38 fedora 8.1 k freetype x86_64 2.13.1-1.fc39 fedora 414 k fribidi x86_64 1.0.13-1.fc39 fedora 90 k gc x86_64 8.2.2-3.fc38 fedora 110 k gcc-gfortran x86_64 13.1.1-4.fc39 fedora 12 M gcc-plugin-annobin x86_64 13.1.1-4.fc39 fedora 45 k gd x86_64 2.3.3-11.fc39 fedora 139 k gdk-pixbuf2 x86_64 2.42.10-2.fc38 fedora 485 k gl-manpages noarch 1.1-26.20190306.fc38 fedora 1.2 M glib2 x86_64 2.77.0-3.fc39 fedora 2.8 M glibc-devel x86_64 2.37.9000-17.fc39 fedora 80 k glibc-headers-x86 noarch 2.37.9000-17.fc39 fedora 563 k glx-utils x86_64 9.0.0-1.fc39 fedora 77 k gnutls x86_64 3.8.0-6.fc39 fedora 1.1 M google-droid-sans-fonts noarch 20200215-15.fc39 fedora 2.7 M google-noto-fonts-common noarch 20230601-3.fc39 fedora 16 k google-noto-sans-vf-fonts noarch 20230601-3.fc39 fedora 582 k graphite2 x86_64 1.3.14-11.fc38 fedora 95 k groff-base x86_64 1.23.0-1.fc39 fedora 1.1 M gts x86_64 0.7.6-45.20121130.fc39 fedora 239 k guile22 x86_64 2.2.7-8.fc39 fedora 6.5 M harfbuzz x86_64 8.0.1-2.fc39 fedora 937 k hdf5 x86_64 1.12.1-12.fc39 fedora 2.2 M highway x86_64 1.0.4-2.fc39 fedora 391 k hwdata noarch 0.372-1.fc39 fedora 1.6 M inchi-libs x86_64 1.0.6-6.fc38 fedora 684 k jbig2dec-libs x86_64 0.19-8.fc38 fedora 73 k jbigkit-libs x86_64 2.1-25.fc38 fedora 53 k jsoncpp x86_64 1.9.5-4.fc38 fedora 97 k kernel-headers x86_64 6.5.0-0.rc2.git0.1.fc39 fedora 1.5 M langpacks-core-font-en noarch 3.0-35.fc39 fedora 9.9 k lasi x86_64 1.1.3-10.fc38 fedora 53 k lcms2 x86_64 2.15-1.fc39 fedora 177 k libGLEW x86_64 2.2.0-4.fc38 fedora 175 k libICE x86_64 1.0.10-10.fc38 fedora 71 k libSM x86_64 1.2.3-12.fc38 fedora 41 k libX11 x86_64 1.8.6-1.fc39 fedora 649 k libX11-common noarch 1.8.6-1.fc39 fedora 175 k libX11-devel x86_64 1.8.6-1.fc39 fedora 1.0 M libX11-xcb x86_64 1.8.6-1.fc39 fedora 11 k libXau x86_64 1.0.11-2.fc38 fedora 32 k libXau-devel x86_64 1.0.11-2.fc38 fedora 14 k libXext x86_64 1.3.5-2.fc38 fedora 39 k libXfixes x86_64 6.0.0-5.fc38 fedora 19 k libXft x86_64 2.3.8-2.fc39 fedora 72 k libXpm x86_64 3.5.15-3.fc38 fedora 63 k libXrender x86_64 0.9.11-2.fc38 fedora 27 k libXt x86_64 1.2.1-4.fc38 fedora 179 k libXxf86vm x86_64 1.1.5-2.fc38 fedora 18 k libaec x86_64 1.0.6-4.fc38 fedora 42 k libaec-devel x86_64 1.0.6-4.fc38 fedora 12 k libaom x86_64 3.6.1-1.fc39 fedora 1.8 M libavif x86_64 0.11.1-9.fc39 fedora 84 k libb2 x86_64 0.98.1-8.fc38 fedora 25 k libdatrie x86_64 0.2.13-6.fc39 fedora 32 k libdav1d x86_64 1.2.1-1.fc39 fedora 618 k libdrm x86_64 2.4.114-2.fc38 fedora 157 k libedit x86_64 3.1-45.20221030cvs.fc38 fedora 107 k libevdev x86_64 1.13.1-1.fc39 fedora 44 k libfontenc x86_64 1.1.6-2.fc38 fedora 32 k libgfortran x86_64 13.1.1-4.fc39 fedora 896 k libglvnd x86_64 1:1.6.0-2.fc38 fedora 134 k libglvnd-core-devel x86_64 1:1.6.0-2.fc38 fedora 18 k libglvnd-devel x86_64 1:1.6.0-2.fc38 fedora 163 k libglvnd-egl x86_64 1:1.6.0-2.fc38 fedora 36 k libglvnd-gles x86_64 1:1.6.0-2.fc38 fedora 32 k libglvnd-glx x86_64 1:1.6.0-2.fc38 fedora 142 k libglvnd-opengl x86_64 1:1.6.0-2.fc38 fedora 43 k libgs x86_64 10.01.2-1.fc39 fedora 3.5 M libgudev x86_64 238-1.fc39 fedora 34 k libicu x86_64 73.2-1.fc39 fedora 11 M libicu-devel x86_64 73.2-1.fc39 fedora 924 k libijs x86_64 0.35-17.fc38 fedora 29 k libimagequant x86_64 4.0.1-4.fc39 fedora 302 k libinput x86_64 1.23.0-2.fc39 fedora 213 k libjpeg-turbo x86_64 2.1.4-2.fc38 fedora 183 k libjxl x86_64 1:0.8.2-1.fc39 fedora 1.2 M libmpc x86_64 1.3.1-2.fc38 fedora 70 k libpaper x86_64 1:2.1.0-1.fc39 fedora 26 k libpciaccess x86_64 0.16-8.fc38 fedora 26 k libpng x86_64 2:1.6.37-14.fc38 fedora 120 k libproxy x86_64 0.5.3-1.fc39 copr_base 49 k libquadmath x86_64 13.1.1-4.fc39 fedora 192 k libquadmath-devel x86_64 13.1.1-4.fc39 fedora 34 k librsvg2 x86_64 2.56.90-1.fc39 fedora 1.5 M libstdc++-devel x86_64 13.1.1-4.fc39 fedora 2.6 M libthai x86_64 0.1.29-5.fc39 fedora 213 k libtiff x86_64 4.4.0-5.fc38 fedora 197 k libtool-ltdl x86_64 2.4.7-6.fc38 fedora 37 k libuv x86_64 1:1.46.0-1.fc39 fedora 159 k libvmaf x86_64 2.3.0-5.fc38 fedora 180 k libwacom x86_64 2.7.0-1.fc39 fedora 42 k libwacom-data noarch 2.7.0-1.fc39 fedora 187 k libwayland-client x86_64 1.22.0-1.fc39 fedora 33 k libwayland-server x86_64 1.22.0-1.fc39 fedora 42 k libwebp x86_64 1.3.1-1.fc39 fedora 283 k libxcb x86_64 1.13.1-11.fc38 fedora 231 k libxcb-devel x86_64 1.13.1-11.fc38 fedora 1.4 M libxcrypt-devel x86_64 4.4.36-1.fc39 fedora 30 k libxkbcommon x86_64 1.5.0-2.fc39 fedora 139 k libxkbcommon-x11 x86_64 1.5.0-2.fc39 fedora 22 k libxshmfence x86_64 1.3-12.fc38 fedora 12 k llvm-libs x86_64 16.0.6-4.fc39 fedora 27 M mesa-libEGL x86_64 23.1.3-1.fc39 fedora 132 k mesa-libEGL-devel x86_64 23.1.3-1.fc39 fedora 21 k mesa-libGL x86_64 23.1.3-1.fc39 fedora 174 k mesa-libGLU x86_64 9.0.1-8.fc38 fedora 155 k mesa-libgbm x86_64 23.1.3-1.fc39 fedora 45 k mesa-libglapi x86_64 23.1.3-1.fc39 fedora 54 k mkfontscale x86_64 1.2.2-3.fc38 fedora 32 k mpdecimal x86_64 2.5.1-6.fc38 fedora 89 k msgpack x86_64 3.1.0-11.fc38 fedora 30 k msgpack-devel x86_64 3.1.0-11.fc38 fedora 427 k mtdev x86_64 1.1.6-5.fc38 fedora 21 k ncurses x86_64 6.4-5.20230520.fc39 fedora 416 k netpbm x86_64 11.02.00-1.fc39 fedora 185 k nettle x86_64 3.9.1-1.fc39 fedora 425 k nspr x86_64 4.35.0-9.fc39 fedora 138 k nss x86_64 3.91.0-1.fc39 fedora 696 k nss-softokn x86_64 3.91.0-1.fc39 fedora 1.0 M nss-softokn-freebl x86_64 3.91.0-1.fc39 fedora 327 k nss-sysinit x86_64 3.91.0-1.fc39 fedora 18 k nss-util x86_64 3.91.0-1.fc39 fedora 87 k openbabel-libs x86_64 3.1.1-20.fc39 copr_base 3.7 M openblas x86_64 0.3.21-4.fc38 fedora 35 k openblas-openmp x86_64 0.3.21-4.fc38 fedora 5.1 M openjpeg2 x86_64 2.5.0-3.fc38 fedora 178 k pango x86_64 1.50.14-1.fc39 fedora 342 k pcre2-utf16 x86_64 10.42-1.fc38.1 fedora 214 k perl-Carp noarch 1.54-499.fc39 fedora 29 k perl-Class-Struct noarch 0.68-499.fc39 fedora 22 k perl-DynaLoader x86_64 1.54-499.fc39 fedora 26 k perl-Encode x86_64 4:3.19-499.fc39 fedora 1.7 M perl-English noarch 1.11-499.fc39 fedora 14 k perl-Errno x86_64 1.37-499.fc39 fedora 15 k perl-Exporter noarch 5.77-499.fc39 fedora 30 k perl-Fcntl x86_64 1.15-499.fc39 fedora 20 k perl-File-Basename noarch 2.86-499.fc39 fedora 17 k perl-File-Find noarch 1.43-499.fc39 fedora 25 k perl-File-Path noarch 2.18-499.fc39 fedora 35 k perl-File-Temp noarch 1:0.231.100-499.fc39 fedora 59 k perl-File-stat noarch 1.13-499.fc39 fedora 17 k perl-Getopt-Long noarch 1:2.54-499.fc39 fedora 60 k perl-Getopt-Std noarch 1.13-499.fc39 fedora 16 k perl-HTTP-Tiny noarch 0.088-1.fc39 fedora 55 k perl-IO x86_64 1.52-499.fc39 fedora 82 k perl-IPC-Open3 noarch 1.22-499.fc39 fedora 22 k perl-MIME-Base64 x86_64 3.16-499.fc39 fedora 30 k perl-POSIX x86_64 2.13-499.fc39 fedora 97 k perl-PathTools x86_64 3.89-499.fc39 fedora 87 k perl-Pod-Escapes noarch 1:1.07-499.fc39 fedora 19 k perl-Pod-Perldoc noarch 3.28.01-500.fc39 fedora 86 k perl-Pod-Simple noarch 1:3.45-3.fc39 fedora 218 k perl-Pod-Usage noarch 4:2.03-499.fc39 fedora 40 k perl-Scalar-List-Utils x86_64 5:1.63-499.fc39 fedora 72 k perl-SelectSaver noarch 1.02-499.fc39 fedora 12 k perl-Socket x86_64 4:2.037-2.fc39 fedora 55 k perl-Storable x86_64 1:3.32-499.fc39 fedora 99 k perl-Symbol noarch 1.09-499.fc39 fedora 14 k perl-Term-ANSIColor noarch 5.01-500.fc39 fedora 47 k perl-Term-Cap noarch 1.18-499.fc39 fedora 22 k perl-Text-ParseWords noarch 3.31-499.fc39 fedora 16 k perl-Text-Tabs+Wrap noarch 2023.0511-2.fc39 fedora 22 k perl-Time-Local noarch 2:1.350-2.fc39 fedora 34 k perl-constant noarch 1.33-500.fc39 fedora 23 k perl-if noarch 0.61.000-499.fc39 fedora 14 k perl-interpreter x86_64 4:5.38.0-499.fc39 fedora 72 k perl-libs x86_64 4:5.38.0-499.fc39 fedora 2.3 M perl-locale noarch 1.10-499.fc39 fedora 14 k perl-mro x86_64 1.28-499.fc39 fedora 29 k perl-overload noarch 1.37-499.fc39 fedora 45 k perl-overloading noarch 0.02-499.fc39 fedora 13 k perl-parent noarch 1:0.241-499.fc39 fedora 15 k perl-podlators noarch 1:5.01-499.fc39 fedora 125 k perl-vars noarch 1.05-499.fc39 fedora 13 k pixman x86_64 0.42.2-1.fc39 fedora 284 k poppler x86_64 23.02.0-2.fc39 fedora 1.2 M poppler-data noarch 0.4.11-4.fc38 fedora 2.0 M poppler-glib x86_64 23.02.0-2.fc39 fedora 176 k pyproject-rpm-macros noarch 1.9.0-1.fc39 fedora 42 k python-pip-wheel noarch 23.1.2-2.fc39 fedora 1.4 M python-rpm-macros noarch 3.12-1.fc39 fedora 19 k python3 x86_64 3.12.0~b4-1.fc39 fedora 26 k python3-libs x86_64 3.12.0~b4-1.fc39 fedora 9.2 M python3-numpy x86_64 1:1.24.3-2.fc39 fedora 7.2 M python3-packaging noarch 23.1-3.fc39 fedora 114 k python3-rpm-generators noarch 14-6.fc39 fedora 30 k python3-rpm-macros noarch 3.12-1.fc39 fedora 15 k qt-settings noarch 38.2-2.fc39 fedora 10 k qt5-designer x86_64 5.15.10-2.fc39 fedora 161 k qt5-doctools x86_64 5.15.10-2.fc39 fedora 696 k qt5-linguist x86_64 5.15.10-2.fc39 fedora 883 k qt5-qtbase x86_64 5.15.10-2.fc39 fedora 3.6 M qt5-qtbase-common noarch 5.15.10-2.fc39 fedora 12 k qt5-qtbase-gui x86_64 5.15.10-2.fc39 fedora 6.4 M qt5-qtdeclarative x86_64 5.15.10-1.fc39 fedora 4.3 M qt5-qtsvg x86_64 5.15.10-1.fc39 fedora 185 k qt5-qttools x86_64 5.15.10-2.fc39 fedora 41 k qt5-qttools-common noarch 5.15.10-2.fc39 fedora 11 k qt5-qttools-libs-designer x86_64 5.15.10-2.fc39 fedora 2.7 M qt5-qttools-libs-designercomponents x86_64 5.15.10-2.fc39 fedora 788 k qt5-qttools-libs-help x86_64 5.15.10-2.fc39 fedora 157 k qt5-rpm-macros noarch 5.15.10-1.fc39 fedora 9.5 k rav1e-libs x86_64 0.6.6-1.fc39 fedora 1.0 M rhash x86_64 1.4.3-2.fc38 fedora 194 k shared-mime-info x86_64 2.2-3.fc38 fedora 381 k spglib x86_64 2.0.2-2.fc39 fedora 209 k svt-av1-libs x86_64 1.4.1-2.fc38 fedora 2.0 M urw-base35-bookman-fonts noarch 20200910-16.fc38 fedora 848 k urw-base35-c059-fonts noarch 20200910-16.fc38 fedora 875 k urw-base35-d050000l-fonts noarch 20200910-16.fc38 fedora 76 k urw-base35-fonts noarch 20200910-16.fc38 fedora 11 k urw-base35-fonts-common noarch 20200910-16.fc38 fedora 21 k urw-base35-gothic-fonts noarch 20200910-16.fc38 fedora 643 k urw-base35-nimbus-mono-ps-fonts noarch 20200910-16.fc38 fedora 796 k urw-base35-nimbus-roman-fonts noarch 20200910-16.fc38 fedora 857 k urw-base35-nimbus-sans-fonts noarch 20200910-16.fc38 fedora 1.3 M urw-base35-p052-fonts noarch 20200910-16.fc38 fedora 974 k urw-base35-standard-symbols-ps-fonts noarch 20200910-16.fc38 fedora 42 k urw-base35-z003-fonts noarch 20200910-16.fc38 fedora 276 k vim-filesystem noarch 2:9.0.1677-2.fc39 fedora 18 k vulkan-headers noarch 1.3.250.0-1.fc39 fedora 1.1 M vulkan-loader x86_64 1.3.250.0-1.fc39 fedora 143 k vulkan-loader-devel x86_64 1.3.250.0-1.fc39 fedora 9.3 k xapian-core-libs x86_64 1.4.22-1.fc39 fedora 768 k xcb-util x86_64 0.4.1-2.fc38 fedora 19 k xcb-util-image x86_64 0.4.1-2.fc38 fedora 19 k xcb-util-keysyms x86_64 0.4.1-2.fc38 fedora 14 k xcb-util-renderutil x86_64 0.3.10-2.fc38 fedora 17 k xcb-util-wm x86_64 0.4.2-2.fc38 fedora 31 k xkeyboard-config noarch 2.39-1.fc39 fedora 962 k xml-common noarch 0.6.3-60.fc38 fedora 31 k xorg-x11-fonts-ISO8859-1-100dpi noarch 7.5-35.fc38 fedora 1.1 M xorg-x11-proto-devel noarch 2023.2-1.fc39 fedora 297 k zlib-devel x86_64 1.2.13-3.fc38 fedora 45 k Transaction Summary =========================================================================================== Install 311 Packages Total download size: 306 M Installed size: 1.2 G Downloading Packages: (1/311): libproxy-0.5.3-1.fc39.x86_64.rpm 1.8 MB/s | 49 kB 00:00 (2/311): graphviz-8.1.0-4.fc39.x86_64.rpm 116 MB/s | 5.0 MB 00:00 (3/311): openbabel-devel-3.1.1-20.fc39.x86_64.r 3.6 MB/s | 192 kB 00:00 (4/311): adobe-mappings-cmap-deprecated-2023011 16 MB/s | 113 kB 00:00 (5/311): adobe-mappings-cmap-20230118-1.fc38.no 89 MB/s | 2.1 MB 00:00 (6/311): annobin-docs-12.21-1.fc39.noarch.rpm 34 MB/s | 95 kB 00:00 (7/311): adobe-mappings-pdf-20190401-3.fc38.noa 71 MB/s | 698 kB 00:00 (8/311): avahi-libs-0.8-23.fc39.x86_64.rpm 25 MB/s | 67 kB 00:00 (9/311): annobin-plugin-gcc-12.21-1.fc39.x86_64 146 MB/s | 959 kB 00:00 (10/311): boost-1.81.0-5.fc39.x86_64.rpm 8.4 MB/s | 14 kB 00:00 (11/311): boost-atomic-1.81.0-5.fc39.x86_64.rpm 11 MB/s | 20 kB 00:00 (12/311): boost-chrono-1.81.0-5.fc39.x86_64.rpm 14 MB/s | 26 kB 00:00 (13/311): boost-container-1.81.0-5.fc39.x86_64. 19 MB/s | 40 kB 00:00 (14/311): boost-context-1.81.0-5.fc39.x86_64.rp 7.8 MB/s | 17 kB 00:00 (15/311): boost-contract-1.81.0-5.fc39.x86_64.r 25 MB/s | 46 kB 00:00 (16/311): boost-coroutine-1.81.0-5.fc39.x86_64. 8.7 MB/s | 20 kB 00:00 (17/311): boost-date-time-1.81.0-5.fc39.x86_64. 11 MB/s | 16 kB 00:00 (18/311): boost-fiber-1.81.0-5.fc39.x86_64.rpm 2.8 MB/s | 42 kB 00:00 (19/311): openbabel-libs-3.1.1-20.fc39.x86_64.r 41 MB/s | 3.7 MB 00:00 (20/311): boost-filesystem-1.81.0-5.fc39.x86_64 6.4 MB/s | 68 kB 00:00 (21/311): boost-graph-1.81.0-5.fc39.x86_64.rpm 17 MB/s | 153 kB 00:00 (22/311): boost-iostreams-1.81.0-5.fc39.x86_64. 4.7 MB/s | 42 kB 00:00 (23/311): boost-devel-1.81.0-5.fc39.x86_64.rpm 245 MB/s | 14 MB 00:00 (24/311): boost-json-1.81.0-5.fc39.x86_64.rpm 6.8 MB/s | 110 kB 00:00 (25/311): boost-locale-1.81.0-5.fc39.x86_64.rpm 13 MB/s | 222 kB 00:00 (26/311): boost-log-1.81.0-5.fc39.x86_64.rpm 122 MB/s | 493 kB 00:00 (27/311): boost-math-1.81.0-5.fc39.x86_64.rpm 56 MB/s | 219 kB 00:00 (28/311): boost-nowide-1.81.0-5.fc39.x86_64.rpm 5.4 MB/s | 21 kB 00:00 (29/311): boost-numpy3-1.81.0-5.fc39.x86_64.rpm 14 MB/s | 30 kB 00:00 (30/311): boost-program-options-1.81.0-5.fc39.x 44 MB/s | 110 kB 00:00 (31/311): boost-python3-1.81.0-5.fc39.x86_64.rp 31 MB/s | 97 kB 00:00 (32/311): boost-random-1.81.0-5.fc39.x86_64.rpm 10 MB/s | 24 kB 00:00 (33/311): boost-regex-1.81.0-5.fc39.x86_64.rpm 50 MB/s | 112 kB 00:00 (34/311): boost-serialization-1.81.0-5.fc39.x86 54 MB/s | 135 kB 00:00 (35/311): boost-stacktrace-1.81.0-5.fc39.x86_64 12 MB/s | 30 kB 00:00 (36/311): boost-system-1.81.0-5.fc39.x86_64.rpm 8.9 MB/s | 16 kB 00:00 (37/311): boost-test-1.81.0-5.fc39.x86_64.rpm 94 MB/s | 241 kB 00:00 (38/311): boost-thread-1.81.0-5.fc39.x86_64.rpm 22 MB/s | 59 kB 00:00 (39/311): boost-timer-1.81.0-5.fc39.x86_64.rpm 8.8 MB/s | 24 kB 00:00 (40/311): boost-type_erasure-1.81.0-5.fc39.x86_ 19 MB/s | 34 kB 00:00 (41/311): boost-wave-1.81.0-5.fc39.x86_64.rpm 75 MB/s | 225 kB 00:00 (42/311): cairo-1.17.8-4.fc39.x86_64.rpm 145 MB/s | 706 kB 00:00 (43/311): cairo-gobject-1.17.8-4.fc39.x86_64.rp 4.5 MB/s | 18 kB 00:00 (44/311): clang-resource-filesystem-16.0.6-2.fc 5.9 MB/s | 13 kB 00:00 (45/311): cmake-3.27.0~rc5-1.fc39.x86_64.rpm 276 MB/s | 8.0 MB 00:00 (46/311): chrpath-0.16-19.fc38.x86_64.rpm 836 kB/s | 30 kB 00:00 (47/311): cmake-filesystem-3.27.0~rc5-1.fc39.x8 6.2 MB/s | 18 kB 00:00 (48/311): cmake-data-3.27.0~rc5-1.fc39.noarch.r 222 MB/s | 2.2 MB 00:00 (49/311): cmake-rpm-macros-3.27.0~rc5-1.fc39.no 3.3 MB/s | 17 kB 00:00 (50/311): crypto-policies-scripts-20230614-1.gi 39 MB/s | 116 kB 00:00 (51/311): cups-libs-2.4.6-1.fc39.x86_64.rpm 18 MB/s | 266 kB 00:00 (52/311): cpp-13.1.1-4.fc39.x86_64.rpm 259 MB/s | 11 MB 00:00 (53/311): dbus-libs-1.14.8-1.fc39.x86_64.rpm 7.0 MB/s | 156 kB 00:00 (54/311): double-conversion-3.1.5-8.fc38.x86_64 18 MB/s | 49 kB 00:00 (55/311): duktape-2.7.0-4.fc39.x86_64.rpm 3.3 MB/s | 170 kB 00:00 (56/311): eigen3-devel-3.4.0-10.fc39.noarch.rpm 45 MB/s | 1.2 MB 00:00 (57/311): emacs-filesystem-28.2-6.fc39.noarch.r 779 kB/s | 7.8 kB 00:00 (58/311): doxygen-1.9.7-2.fc39.x86_64.rpm 47 MB/s | 5.0 MB 00:00 (59/311): expat-2.5.0-2.fc38.x86_64.rpm 5.4 MB/s | 110 kB 00:00 (60/311): flexiblas-3.3.1-3.fc39.x86_64.rpm 10 MB/s | 33 kB 00:00 (61/311): flexiblas-openblas-openmp-3.3.1-3.fc3 3.0 MB/s | 17 kB 00:00 (62/311): flexiblas-netlib-3.3.1-3.fc39.x86_64. 179 MB/s | 3.1 MB 00:00 (63/311): fontconfig-2.14.2-3.fc39.x86_64.rpm 28 MB/s | 296 kB 00:00 (64/311): fonts-filesystem-2.0.5-11.fc38.noarch 1.0 MB/s | 8.1 kB 00:00 (65/311): freetype-2.13.1-1.fc39.x86_64.rpm 65 MB/s | 414 kB 00:00 (66/311): fribidi-1.0.13-1.fc39.x86_64.rpm 14 MB/s | 90 kB 00:00 (67/311): gc-8.2.2-3.fc38.x86_64.rpm 26 MB/s | 110 kB 00:00 (68/311): clang-libs-16.0.6-2.fc39.x86_64.rpm 83 MB/s | 22 MB 00:00 (69/311): gcc-c++-13.1.1-4.fc39.x86_64.rpm 132 MB/s | 13 MB 00:00 (70/311): gcc-plugin-annobin-13.1.1-4.fc39.x86_ 3.7 MB/s | 45 kB 00:00 (71/311): gcc-gfortran-13.1.1-4.fc39.x86_64.rpm 118 MB/s | 12 MB 00:00 (72/311): gd-2.3.3-11.fc39.x86_64.rpm 5.8 MB/s | 139 kB 00:00 (73/311): 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Verifying : libpciaccess-0.16-8.fc38.x86_64 150/311 Verifying : libpng-2:1.6.37-14.fc38.x86_64 151/311 Verifying : libquadmath-13.1.1-4.fc39.x86_64 152/311 Verifying : libquadmath-devel-13.1.1-4.fc39.x86_64 153/311 Verifying : librsvg2-2.56.90-1.fc39.x86_64 154/311 Verifying : libstdc++-devel-13.1.1-4.fc39.x86_64 155/311 Verifying : libthai-0.1.29-5.fc39.x86_64 156/311 Verifying : libtiff-4.4.0-5.fc38.x86_64 157/311 Verifying : libtool-ltdl-2.4.7-6.fc38.x86_64 158/311 Verifying : libuv-1:1.46.0-1.fc39.x86_64 159/311 Verifying : libvmaf-2.3.0-5.fc38.x86_64 160/311 Verifying : libwacom-2.7.0-1.fc39.x86_64 161/311 Verifying : libwacom-data-2.7.0-1.fc39.noarch 162/311 Verifying : libwayland-client-1.22.0-1.fc39.x86_64 163/311 Verifying : libwayland-server-1.22.0-1.fc39.x86_64 164/311 Verifying : libwebp-1.3.1-1.fc39.x86_64 165/311 Verifying : libxcb-1.13.1-11.fc38.x86_64 166/311 Verifying : libxcb-devel-1.13.1-11.fc38.x86_64 167/311 Verifying : libxcrypt-devel-4.4.36-1.fc39.x86_64 168/311 Verifying : libxkbcommon-1.5.0-2.fc39.x86_64 169/311 Verifying : libxkbcommon-x11-1.5.0-2.fc39.x86_64 170/311 Verifying : libxshmfence-1.3-12.fc38.x86_64 171/311 Verifying : llvm-libs-16.0.6-4.fc39.x86_64 172/311 Verifying : make-1:4.4.1-1.fc39.x86_64 173/311 Verifying : mesa-libEGL-23.1.3-1.fc39.x86_64 174/311 Verifying : mesa-libEGL-devel-23.1.3-1.fc39.x86_64 175/311 Verifying : mesa-libGL-23.1.3-1.fc39.x86_64 176/311 Verifying : mesa-libGLU-9.0.1-8.fc38.x86_64 177/311 Verifying : mesa-libGLU-devel-9.0.1-8.fc38.x86_64 178/311 Verifying : mesa-libgbm-23.1.3-1.fc39.x86_64 179/311 Verifying : mesa-libglapi-23.1.3-1.fc39.x86_64 180/311 Verifying : mkfontscale-1.2.2-3.fc38.x86_64 181/311 Verifying : mmtf-cpp-devel-1.1.0-2.fc38.x86_64 182/311 Verifying : mpdecimal-2.5.1-6.fc38.x86_64 183/311 Verifying : msgpack-3.1.0-11.fc38.x86_64 184/311 Verifying : msgpack-devel-3.1.0-11.fc38.x86_64 185/311 Verifying : mtdev-1.1.6-5.fc38.x86_64 186/311 Verifying : ncurses-6.4-5.20230520.fc39.x86_64 187/311 Verifying : netpbm-11.02.00-1.fc39.x86_64 188/311 Verifying : nettle-3.9.1-1.fc39.x86_64 189/311 Verifying : nspr-4.35.0-9.fc39.x86_64 190/311 Verifying : nss-3.91.0-1.fc39.x86_64 191/311 Verifying : nss-softokn-3.91.0-1.fc39.x86_64 192/311 Verifying : nss-softokn-freebl-3.91.0-1.fc39.x86_64 193/311 Verifying : nss-sysinit-3.91.0-1.fc39.x86_64 194/311 Verifying : nss-util-3.91.0-1.fc39.x86_64 195/311 Verifying : openblas-0.3.21-4.fc38.x86_64 196/311 Verifying : openblas-openmp-0.3.21-4.fc38.x86_64 197/311 Verifying : openjpeg2-2.5.0-3.fc38.x86_64 198/311 Verifying : pango-1.50.14-1.fc39.x86_64 199/311 Verifying : pcre2-utf16-10.42-1.fc38.1.x86_64 200/311 Verifying : perl-Carp-1.54-499.fc39.noarch 201/311 Verifying : perl-Class-Struct-0.68-499.fc39.noarch 202/311 Verifying : perl-DynaLoader-1.54-499.fc39.x86_64 203/311 Verifying : perl-Encode-4:3.19-499.fc39.x86_64 204/311 Verifying : perl-English-1.11-499.fc39.noarch 205/311 Verifying : perl-Errno-1.37-499.fc39.x86_64 206/311 Verifying : perl-Exporter-5.77-499.fc39.noarch 207/311 Verifying : perl-Fcntl-1.15-499.fc39.x86_64 208/311 Verifying : perl-File-Basename-2.86-499.fc39.noarch 209/311 Verifying : perl-File-Find-1.43-499.fc39.noarch 210/311 Verifying : perl-File-Path-2.18-499.fc39.noarch 211/311 Verifying : perl-File-Temp-1:0.231.100-499.fc39.noarch 212/311 Verifying : perl-File-stat-1.13-499.fc39.noarch 213/311 Verifying : perl-Getopt-Long-1:2.54-499.fc39.noarch 214/311 Verifying : perl-Getopt-Std-1.13-499.fc39.noarch 215/311 Verifying : perl-HTTP-Tiny-0.088-1.fc39.noarch 216/311 Verifying : perl-IO-1.52-499.fc39.x86_64 217/311 Verifying : perl-IPC-Open3-1.22-499.fc39.noarch 218/311 Verifying : perl-MIME-Base64-3.16-499.fc39.x86_64 219/311 Verifying : perl-POSIX-2.13-499.fc39.x86_64 220/311 Verifying : perl-PathTools-3.89-499.fc39.x86_64 221/311 Verifying : perl-Pod-Escapes-1:1.07-499.fc39.noarch 222/311 Verifying : perl-Pod-Perldoc-3.28.01-500.fc39.noarch 223/311 Verifying : perl-Pod-Simple-1:3.45-3.fc39.noarch 224/311 Verifying : perl-Pod-Usage-4:2.03-499.fc39.noarch 225/311 Verifying : perl-Scalar-List-Utils-5:1.63-499.fc39.x86_64 226/311 Verifying : perl-SelectSaver-1.02-499.fc39.noarch 227/311 Verifying : perl-Socket-4:2.037-2.fc39.x86_64 228/311 Verifying : perl-Storable-1:3.32-499.fc39.x86_64 229/311 Verifying : perl-Symbol-1.09-499.fc39.noarch 230/311 Verifying : perl-Term-ANSIColor-5.01-500.fc39.noarch 231/311 Verifying : perl-Term-Cap-1.18-499.fc39.noarch 232/311 Verifying : perl-Text-ParseWords-3.31-499.fc39.noarch 233/311 Verifying : perl-Text-Tabs+Wrap-2023.0511-2.fc39.noarch 234/311 Verifying : perl-Time-Local-2:1.350-2.fc39.noarch 235/311 Verifying : perl-constant-1.33-500.fc39.noarch 236/311 Verifying : perl-if-0.61.000-499.fc39.noarch 237/311 Verifying : perl-interpreter-4:5.38.0-499.fc39.x86_64 238/311 Verifying : perl-libs-4:5.38.0-499.fc39.x86_64 239/311 Verifying : perl-locale-1.10-499.fc39.noarch 240/311 Verifying : perl-mro-1.28-499.fc39.x86_64 241/311 Verifying : perl-overload-1.37-499.fc39.noarch 242/311 Verifying : perl-overloading-0.02-499.fc39.noarch 243/311 Verifying : perl-parent-1:0.241-499.fc39.noarch 244/311 Verifying : perl-podlators-1:5.01-499.fc39.noarch 245/311 Verifying : perl-vars-1.05-499.fc39.noarch 246/311 Verifying : pixman-0.42.2-1.fc39.x86_64 247/311 Verifying : poppler-23.02.0-2.fc39.x86_64 248/311 Verifying : poppler-data-0.4.11-4.fc38.noarch 249/311 Verifying : poppler-glib-23.02.0-2.fc39.x86_64 250/311 Verifying : pyproject-rpm-macros-1.9.0-1.fc39.noarch 251/311 Verifying : python-pip-wheel-23.1.2-2.fc39.noarch 252/311 Verifying : python-rpm-macros-3.12-1.fc39.noarch 253/311 Verifying : python3-3.12.0~b4-1.fc39.x86_64 254/311 Verifying : python3-devel-3.12.0~b4-1.fc39.x86_64 255/311 Verifying : python3-libs-3.12.0~b4-1.fc39.x86_64 256/311 Verifying : python3-numpy-1:1.24.3-2.fc39.x86_64 257/311 Verifying : python3-packaging-23.1-3.fc39.noarch 258/311 Verifying : python3-rpm-generators-14-6.fc39.noarch 259/311 Verifying : python3-rpm-macros-3.12-1.fc39.noarch 260/311 Verifying : qt-settings-38.2-2.fc39.noarch 261/311 Verifying : qt5-designer-5.15.10-2.fc39.x86_64 262/311 Verifying : qt5-doctools-5.15.10-2.fc39.x86_64 263/311 Verifying : qt5-linguist-5.15.10-2.fc39.x86_64 264/311 Verifying : qt5-qtbase-5.15.10-2.fc39.x86_64 265/311 Verifying : qt5-qtbase-common-5.15.10-2.fc39.noarch 266/311 Verifying : qt5-qtbase-devel-5.15.10-2.fc39.x86_64 267/311 Verifying : qt5-qtbase-gui-5.15.10-2.fc39.x86_64 268/311 Verifying : qt5-qtdeclarative-5.15.10-1.fc39.x86_64 269/311 Verifying : qt5-qtsvg-5.15.10-1.fc39.x86_64 270/311 Verifying : qt5-qtsvg-devel-5.15.10-1.fc39.x86_64 271/311 Verifying : qt5-qttools-5.15.10-2.fc39.x86_64 272/311 Verifying : qt5-qttools-common-5.15.10-2.fc39.noarch 273/311 Verifying : qt5-qttools-devel-5.15.10-2.fc39.x86_64 274/311 Verifying : qt5-qttools-libs-designer-5.15.10-2.fc39.x86_64 275/311 Verifying : qt5-qttools-libs-designercomponents-5.15.10-2.fc 276/311 Verifying : qt5-qttools-libs-help-5.15.10-2.fc39.x86_64 277/311 Verifying : qt5-rpm-macros-5.15.10-1.fc39.noarch 278/311 Verifying : rav1e-libs-0.6.6-1.fc39.x86_64 279/311 Verifying : rhash-1.4.3-2.fc38.x86_64 280/311 Verifying : shared-mime-info-2.2-3.fc38.x86_64 281/311 Verifying : spglib-2.0.2-2.fc39.x86_64 282/311 Verifying : spglib-devel-2.0.2-2.fc39.x86_64 283/311 Verifying : svt-av1-libs-1.4.1-2.fc38.x86_64 284/311 Verifying : urw-base35-bookman-fonts-20200910-16.fc38.noarch 285/311 Verifying : urw-base35-c059-fonts-20200910-16.fc38.noarch 286/311 Verifying : urw-base35-d050000l-fonts-20200910-16.fc38.noarc 287/311 Verifying : urw-base35-fonts-20200910-16.fc38.noarch 288/311 Verifying : urw-base35-fonts-common-20200910-16.fc38.noarch 289/311 Verifying : urw-base35-gothic-fonts-20200910-16.fc38.noarch 290/311 Verifying : urw-base35-nimbus-mono-ps-fonts-20200910-16.fc38 291/311 Verifying : urw-base35-nimbus-roman-fonts-20200910-16.fc38.n 292/311 Verifying : urw-base35-nimbus-sans-fonts-20200910-16.fc38.no 293/311 Verifying : urw-base35-p052-fonts-20200910-16.fc38.noarch 294/311 Verifying : urw-base35-standard-symbols-ps-fonts-20200910-16 295/311 Verifying : urw-base35-z003-fonts-20200910-16.fc38.noarch 296/311 Verifying : vim-filesystem-2:9.0.1677-2.fc39.noarch 297/311 Verifying : vulkan-headers-1.3.250.0-1.fc39.noarch 298/311 Verifying : vulkan-loader-1.3.250.0-1.fc39.x86_64 299/311 Verifying : vulkan-loader-devel-1.3.250.0-1.fc39.x86_64 300/311 Verifying : xapian-core-libs-1.4.22-1.fc39.x86_64 301/311 Verifying : xcb-util-0.4.1-2.fc38.x86_64 302/311 Verifying : xcb-util-image-0.4.1-2.fc38.x86_64 303/311 Verifying : xcb-util-keysyms-0.4.1-2.fc38.x86_64 304/311 Verifying : xcb-util-renderutil-0.3.10-2.fc38.x86_64 305/311 Verifying : xcb-util-wm-0.4.2-2.fc38.x86_64 306/311 Verifying : xkeyboard-config-2.39-1.fc39.noarch 307/311 Verifying : xml-common-0.6.3-60.fc38.noarch 308/311 Verifying : xorg-x11-fonts-ISO8859-1-100dpi-7.5-35.fc38.noar 309/311 Verifying : xorg-x11-proto-devel-2023.2-1.fc39.noarch 310/311 Verifying : zlib-devel-1.2.13-3.fc38.x86_64 311/311 Installed: adobe-mappings-cmap-20230118-1.fc38.noarch adobe-mappings-cmap-deprecated-20230118-1.fc38.noarch adobe-mappings-pdf-20190401-3.fc38.noarch annobin-docs-12.21-1.fc39.noarch annobin-plugin-gcc-12.21-1.fc39.x86_64 avahi-libs-0.8-23.fc39.x86_64 boost-1.81.0-5.fc39.x86_64 boost-atomic-1.81.0-5.fc39.x86_64 boost-chrono-1.81.0-5.fc39.x86_64 boost-container-1.81.0-5.fc39.x86_64 boost-context-1.81.0-5.fc39.x86_64 boost-contract-1.81.0-5.fc39.x86_64 boost-coroutine-1.81.0-5.fc39.x86_64 boost-date-time-1.81.0-5.fc39.x86_64 boost-devel-1.81.0-5.fc39.x86_64 boost-fiber-1.81.0-5.fc39.x86_64 boost-filesystem-1.81.0-5.fc39.x86_64 boost-graph-1.81.0-5.fc39.x86_64 boost-iostreams-1.81.0-5.fc39.x86_64 boost-json-1.81.0-5.fc39.x86_64 boost-locale-1.81.0-5.fc39.x86_64 boost-log-1.81.0-5.fc39.x86_64 boost-math-1.81.0-5.fc39.x86_64 boost-nowide-1.81.0-5.fc39.x86_64 boost-numpy3-1.81.0-5.fc39.x86_64 boost-program-options-1.81.0-5.fc39.x86_64 boost-python3-1.81.0-5.fc39.x86_64 boost-random-1.81.0-5.fc39.x86_64 boost-regex-1.81.0-5.fc39.x86_64 boost-serialization-1.81.0-5.fc39.x86_64 boost-stacktrace-1.81.0-5.fc39.x86_64 boost-system-1.81.0-5.fc39.x86_64 boost-test-1.81.0-5.fc39.x86_64 boost-thread-1.81.0-5.fc39.x86_64 boost-timer-1.81.0-5.fc39.x86_64 boost-type_erasure-1.81.0-5.fc39.x86_64 boost-wave-1.81.0-5.fc39.x86_64 cairo-1.17.8-4.fc39.x86_64 cairo-gobject-1.17.8-4.fc39.x86_64 chrpath-0.16-19.fc38.x86_64 clang-libs-16.0.6-2.fc39.x86_64 clang-resource-filesystem-16.0.6-2.fc39.x86_64 cmake-3.27.0~rc5-1.fc39.x86_64 cmake-data-3.27.0~rc5-1.fc39.noarch cmake-filesystem-3.27.0~rc5-1.fc39.x86_64 cmake-rpm-macros-3.27.0~rc5-1.fc39.noarch cpp-13.1.1-4.fc39.x86_64 crypto-policies-scripts-20230614-1.git5f3458e.fc39.noarch cups-libs-1:2.4.6-1.fc39.x86_64 dbus-libs-1:1.14.8-1.fc39.x86_64 double-conversion-3.1.5-8.fc38.x86_64 doxygen-2:1.9.7-2.fc39.x86_64 duktape-2.7.0-4.fc39.x86_64 eigen3-devel-3.4.0-10.fc39.noarch emacs-filesystem-1:28.2-6.fc39.noarch expat-2.5.0-2.fc38.x86_64 flexiblas-3.3.1-3.fc39.x86_64 flexiblas-netlib-3.3.1-3.fc39.x86_64 flexiblas-openblas-openmp-3.3.1-3.fc39.x86_64 fontconfig-2.14.2-3.fc39.x86_64 fonts-filesystem-1:2.0.5-11.fc38.noarch freetype-2.13.1-1.fc39.x86_64 fribidi-1.0.13-1.fc39.x86_64 gc-8.2.2-3.fc38.x86_64 gcc-13.1.1-4.fc39.x86_64 gcc-c++-13.1.1-4.fc39.x86_64 gcc-gfortran-13.1.1-4.fc39.x86_64 gcc-plugin-annobin-13.1.1-4.fc39.x86_64 gd-2.3.3-11.fc39.x86_64 gdk-pixbuf2-2.42.10-2.fc38.x86_64 gl-manpages-1.1-26.20190306.fc38.noarch glew-devel-2.2.0-4.fc38.x86_64 glib2-2.77.0-3.fc39.x86_64 glibc-devel-2.37.9000-17.fc39.x86_64 glibc-headers-x86-2.37.9000-17.fc39.noarch glx-utils-9.0.0-1.fc39.x86_64 gnutls-3.8.0-6.fc39.x86_64 google-droid-sans-fonts-20200215-15.fc39.noarch google-noto-fonts-common-20230601-3.fc39.noarch google-noto-sans-vf-fonts-20230601-3.fc39.noarch graphite2-1.3.14-11.fc38.x86_64 graphviz-8.1.0-4.fc39.x86_64 groff-base-1.23.0-1.fc39.x86_64 gts-0.7.6-45.20121130.fc39.x86_64 guile22-2.2.7-8.fc39.x86_64 harfbuzz-8.0.1-2.fc39.x86_64 hdf5-1.12.1-12.fc39.x86_64 hdf5-devel-1.12.1-12.fc39.x86_64 highway-1.0.4-2.fc39.x86_64 hwdata-0.372-1.fc39.noarch inchi-libs-1.0.6-6.fc38.x86_64 jbig2dec-libs-0.19-8.fc38.x86_64 jbigkit-libs-2.1-25.fc38.x86_64 jsoncpp-1.9.5-4.fc38.x86_64 jsoncpp-devel-1.9.5-4.fc38.x86_64 kernel-headers-6.5.0-0.rc2.git0.1.fc39.x86_64 langpacks-core-font-en-3.0-35.fc39.noarch lasi-1.1.3-10.fc38.x86_64 lcms2-2.15-1.fc39.x86_64 libGLEW-2.2.0-4.fc38.x86_64 libICE-1.0.10-10.fc38.x86_64 libSM-1.2.3-12.fc38.x86_64 libX11-1.8.6-1.fc39.x86_64 libX11-common-1.8.6-1.fc39.noarch libX11-devel-1.8.6-1.fc39.x86_64 libX11-xcb-1.8.6-1.fc39.x86_64 libXau-1.0.11-2.fc38.x86_64 libXau-devel-1.0.11-2.fc38.x86_64 libXext-1.3.5-2.fc38.x86_64 libXfixes-6.0.0-5.fc38.x86_64 libXft-2.3.8-2.fc39.x86_64 libXpm-3.5.15-3.fc38.x86_64 libXrender-0.9.11-2.fc38.x86_64 libXt-1.2.1-4.fc38.x86_64 libXxf86vm-1.1.5-2.fc38.x86_64 libaec-1.0.6-4.fc38.x86_64 libaec-devel-1.0.6-4.fc38.x86_64 libaom-3.6.1-1.fc39.x86_64 libarchive-devel-3.6.1-5.fc39.x86_64 libavif-0.11.1-9.fc39.x86_64 libb2-0.98.1-8.fc38.x86_64 libdatrie-0.2.13-6.fc39.x86_64 libdav1d-1.2.1-1.fc39.x86_64 libdrm-2.4.114-2.fc38.x86_64 libedit-3.1-45.20221030cvs.fc38.x86_64 libevdev-1.13.1-1.fc39.x86_64 libfontenc-1.1.6-2.fc38.x86_64 libgfortran-13.1.1-4.fc39.x86_64 libglvnd-1:1.6.0-2.fc38.x86_64 libglvnd-core-devel-1:1.6.0-2.fc38.x86_64 libglvnd-devel-1:1.6.0-2.fc38.x86_64 libglvnd-egl-1:1.6.0-2.fc38.x86_64 libglvnd-gles-1:1.6.0-2.fc38.x86_64 libglvnd-glx-1:1.6.0-2.fc38.x86_64 libglvnd-opengl-1:1.6.0-2.fc38.x86_64 libgs-10.01.2-1.fc39.x86_64 libgudev-238-1.fc39.x86_64 libicu-73.2-1.fc39.x86_64 libicu-devel-73.2-1.fc39.x86_64 libijs-0.35-17.fc38.x86_64 libimagequant-4.0.1-4.fc39.x86_64 libinput-1.23.0-2.fc39.x86_64 libjpeg-turbo-2.1.4-2.fc38.x86_64 libjxl-1:0.8.2-1.fc39.x86_64 libmpc-1.3.1-2.fc38.x86_64 libpaper-1:2.1.0-1.fc39.x86_64 libpciaccess-0.16-8.fc38.x86_64 libpng-2:1.6.37-14.fc38.x86_64 libproxy-0.5.3-1.fc39.x86_64 libquadmath-13.1.1-4.fc39.x86_64 libquadmath-devel-13.1.1-4.fc39.x86_64 librsvg2-2.56.90-1.fc39.x86_64 libstdc++-devel-13.1.1-4.fc39.x86_64 libthai-0.1.29-5.fc39.x86_64 libtiff-4.4.0-5.fc38.x86_64 libtool-ltdl-2.4.7-6.fc38.x86_64 libuv-1:1.46.0-1.fc39.x86_64 libvmaf-2.3.0-5.fc38.x86_64 libwacom-2.7.0-1.fc39.x86_64 libwacom-data-2.7.0-1.fc39.noarch libwayland-client-1.22.0-1.fc39.x86_64 libwayland-server-1.22.0-1.fc39.x86_64 libwebp-1.3.1-1.fc39.x86_64 libxcb-1.13.1-11.fc38.x86_64 libxcb-devel-1.13.1-11.fc38.x86_64 libxcrypt-devel-4.4.36-1.fc39.x86_64 libxkbcommon-1.5.0-2.fc39.x86_64 libxkbcommon-x11-1.5.0-2.fc39.x86_64 libxshmfence-1.3-12.fc38.x86_64 llvm-libs-16.0.6-4.fc39.x86_64 make-1:4.4.1-1.fc39.x86_64 mesa-libEGL-23.1.3-1.fc39.x86_64 mesa-libEGL-devel-23.1.3-1.fc39.x86_64 mesa-libGL-23.1.3-1.fc39.x86_64 mesa-libGLU-9.0.1-8.fc38.x86_64 mesa-libGLU-devel-9.0.1-8.fc38.x86_64 mesa-libgbm-23.1.3-1.fc39.x86_64 mesa-libglapi-23.1.3-1.fc39.x86_64 mkfontscale-1.2.2-3.fc38.x86_64 mmtf-cpp-devel-1.1.0-2.fc38.x86_64 mpdecimal-2.5.1-6.fc38.x86_64 msgpack-3.1.0-11.fc38.x86_64 msgpack-devel-3.1.0-11.fc38.x86_64 mtdev-1.1.6-5.fc38.x86_64 ncurses-6.4-5.20230520.fc39.x86_64 netpbm-11.02.00-1.fc39.x86_64 nettle-3.9.1-1.fc39.x86_64 nspr-4.35.0-9.fc39.x86_64 nss-3.91.0-1.fc39.x86_64 nss-softokn-3.91.0-1.fc39.x86_64 nss-softokn-freebl-3.91.0-1.fc39.x86_64 nss-sysinit-3.91.0-1.fc39.x86_64 nss-util-3.91.0-1.fc39.x86_64 openbabel-devel-3.1.1-20.fc39.x86_64 openbabel-libs-3.1.1-20.fc39.x86_64 openblas-0.3.21-4.fc38.x86_64 openblas-openmp-0.3.21-4.fc38.x86_64 openjpeg2-2.5.0-3.fc38.x86_64 pango-1.50.14-1.fc39.x86_64 pcre2-utf16-10.42-1.fc38.1.x86_64 perl-Carp-1.54-499.fc39.noarch perl-Class-Struct-0.68-499.fc39.noarch perl-DynaLoader-1.54-499.fc39.x86_64 perl-Encode-4:3.19-499.fc39.x86_64 perl-English-1.11-499.fc39.noarch perl-Errno-1.37-499.fc39.x86_64 perl-Exporter-5.77-499.fc39.noarch perl-Fcntl-1.15-499.fc39.x86_64 perl-File-Basename-2.86-499.fc39.noarch perl-File-Find-1.43-499.fc39.noarch perl-File-Path-2.18-499.fc39.noarch perl-File-Temp-1:0.231.100-499.fc39.noarch perl-File-stat-1.13-499.fc39.noarch perl-Getopt-Long-1:2.54-499.fc39.noarch perl-Getopt-Std-1.13-499.fc39.noarch perl-HTTP-Tiny-0.088-1.fc39.noarch perl-IO-1.52-499.fc39.x86_64 perl-IPC-Open3-1.22-499.fc39.noarch perl-MIME-Base64-3.16-499.fc39.x86_64 perl-POSIX-2.13-499.fc39.x86_64 perl-PathTools-3.89-499.fc39.x86_64 perl-Pod-Escapes-1:1.07-499.fc39.noarch perl-Pod-Perldoc-3.28.01-500.fc39.noarch perl-Pod-Simple-1:3.45-3.fc39.noarch perl-Pod-Usage-4:2.03-499.fc39.noarch perl-Scalar-List-Utils-5:1.63-499.fc39.x86_64 perl-SelectSaver-1.02-499.fc39.noarch perl-Socket-4:2.037-2.fc39.x86_64 perl-Storable-1:3.32-499.fc39.x86_64 perl-Symbol-1.09-499.fc39.noarch perl-Term-ANSIColor-5.01-500.fc39.noarch perl-Term-Cap-1.18-499.fc39.noarch perl-Text-ParseWords-3.31-499.fc39.noarch perl-Text-Tabs+Wrap-2023.0511-2.fc39.noarch perl-Time-Local-2:1.350-2.fc39.noarch perl-constant-1.33-500.fc39.noarch perl-if-0.61.000-499.fc39.noarch perl-interpreter-4:5.38.0-499.fc39.x86_64 perl-libs-4:5.38.0-499.fc39.x86_64 perl-locale-1.10-499.fc39.noarch perl-mro-1.28-499.fc39.x86_64 perl-overload-1.37-499.fc39.noarch perl-overloading-0.02-499.fc39.noarch perl-parent-1:0.241-499.fc39.noarch perl-podlators-1:5.01-499.fc39.noarch perl-vars-1.05-499.fc39.noarch pixman-0.42.2-1.fc39.x86_64 poppler-23.02.0-2.fc39.x86_64 poppler-data-0.4.11-4.fc38.noarch poppler-glib-23.02.0-2.fc39.x86_64 pyproject-rpm-macros-1.9.0-1.fc39.noarch python-pip-wheel-23.1.2-2.fc39.noarch python-rpm-macros-3.12-1.fc39.noarch python3-3.12.0~b4-1.fc39.x86_64 python3-devel-3.12.0~b4-1.fc39.x86_64 python3-libs-3.12.0~b4-1.fc39.x86_64 python3-numpy-1:1.24.3-2.fc39.x86_64 python3-packaging-23.1-3.fc39.noarch python3-rpm-generators-14-6.fc39.noarch python3-rpm-macros-3.12-1.fc39.noarch qt-settings-38.2-2.fc39.noarch qt5-designer-5.15.10-2.fc39.x86_64 qt5-doctools-5.15.10-2.fc39.x86_64 qt5-linguist-5.15.10-2.fc39.x86_64 qt5-qtbase-5.15.10-2.fc39.x86_64 qt5-qtbase-common-5.15.10-2.fc39.noarch qt5-qtbase-devel-5.15.10-2.fc39.x86_64 qt5-qtbase-gui-5.15.10-2.fc39.x86_64 qt5-qtdeclarative-5.15.10-1.fc39.x86_64 qt5-qtsvg-5.15.10-1.fc39.x86_64 qt5-qtsvg-devel-5.15.10-1.fc39.x86_64 qt5-qttools-5.15.10-2.fc39.x86_64 qt5-qttools-common-5.15.10-2.fc39.noarch qt5-qttools-devel-5.15.10-2.fc39.x86_64 qt5-qttools-libs-designer-5.15.10-2.fc39.x86_64 qt5-qttools-libs-designercomponents-5.15.10-2.fc39.x86_64 qt5-qttools-libs-help-5.15.10-2.fc39.x86_64 qt5-rpm-macros-5.15.10-1.fc39.noarch rav1e-libs-0.6.6-1.fc39.x86_64 rhash-1.4.3-2.fc38.x86_64 shared-mime-info-2.2-3.fc38.x86_64 spglib-2.0.2-2.fc39.x86_64 spglib-devel-2.0.2-2.fc39.x86_64 svt-av1-libs-1.4.1-2.fc38.x86_64 urw-base35-bookman-fonts-20200910-16.fc38.noarch urw-base35-c059-fonts-20200910-16.fc38.noarch urw-base35-d050000l-fonts-20200910-16.fc38.noarch urw-base35-fonts-20200910-16.fc38.noarch urw-base35-fonts-common-20200910-16.fc38.noarch urw-base35-gothic-fonts-20200910-16.fc38.noarch urw-base35-nimbus-mono-ps-fonts-20200910-16.fc38.noarch urw-base35-nimbus-roman-fonts-20200910-16.fc38.noarch urw-base35-nimbus-sans-fonts-20200910-16.fc38.noarch urw-base35-p052-fonts-20200910-16.fc38.noarch urw-base35-standard-symbols-ps-fonts-20200910-16.fc38.noarch urw-base35-z003-fonts-20200910-16.fc38.noarch vim-filesystem-2:9.0.1677-2.fc39.noarch vulkan-headers-1.3.250.0-1.fc39.noarch vulkan-loader-1.3.250.0-1.fc39.x86_64 vulkan-loader-devel-1.3.250.0-1.fc39.x86_64 xapian-core-libs-1.4.22-1.fc39.x86_64 xcb-util-0.4.1-2.fc38.x86_64 xcb-util-image-0.4.1-2.fc38.x86_64 xcb-util-keysyms-0.4.1-2.fc38.x86_64 xcb-util-renderutil-0.3.10-2.fc38.x86_64 xcb-util-wm-0.4.2-2.fc38.x86_64 xkeyboard-config-2.39-1.fc39.noarch xml-common-0.6.3-60.fc38.noarch xorg-x11-fonts-ISO8859-1-100dpi-7.5-35.fc38.noarch xorg-x11-proto-devel-2023.2-1.fc39.noarch zlib-devel-1.2.13-3.fc38.x86_64 Complete! Finish: build setup for avogadro2-libs-1.97.0-5.fc39.src.rpm Start: rpmbuild avogadro2-libs-1.97.0-5.fc39.src.rpm warning: %patchN is deprecated (3 usages found), use %patch N (or %patch -P N) Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689724800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Kp5YHP + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf avogadrolibs-1.97.0 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/avogadrolibs-1.97.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd avogadrolibs-1.97.0 + /usr/bin/mkdir -p SPECPARTS + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/avogenerators-1.97.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + unzip -qq /builddir/build/SOURCES/avogadro2-libs-molecules-master.zip + mv molecules-master molecules + tar -xf /builddir/build/SOURCES/avogadro2-libs-crystals-1.0.1.tar.gz + mv crystals-1.0.1 crystals + mv molecules/LICENSE molecules/LICENSE-molecules + echo 'Patch #0 (avogadro2-libs-set_pythonpath.patch):' Patch #0 (avogadro2-libs-set_pythonpath.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .backup --fuzz=0 patching file avogadro/qtplugins/quantuminput/CMakeLists.txt Hunk #1 succeeded at 37 (offset -4 lines). patching file avogadro/qtplugins/scriptfileformats/CMakeLists.txt Hunk #1 succeeded at 20 (offset -4 lines). Patch #1 (avogadro2-libs-1.94.0-do_not_download_external_files.patch): + echo 'Patch #1 (avogadro2-libs-1.94.0-do_not_download_external_files.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .backup --fuzz=0 patching file avogadro/qtplugins/insertfragment/CMakeLists.txt Patch #2 (avogadro2-libs-bug1185.patch): + echo 'Patch #2 (avogadro2-libs-bug1185.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 patching file avogadro/io/mmtfformat.cpp Hunk #1 succeeded at 33 (offset -2 lines). Hunk #2 succeeded at 50 (offset -2 lines). + mv avogenerators-1.97.0 avogadrogenerators + mv avogadrogenerators/README.md avogadrogenerators/README-avogenerators.md + sed -e 's|../avogadrogenerators|avogadrogenerators|g' -i avogadro/qtplugins/quantuminput/CMakeLists.txt + mv thirdparty/libgwavi/README.md thirdparty/libgwavi/README-libgwavi.md + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.VesWPF + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd avogadrolibs-1.97.0 + mkdir -p build + export 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API' + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API' + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -B build -DCMAKE_BUILD_TYPE:STRING=Release -DINSTALL_INCLUDE_DIR:PATH=include/avogadro2 -DINSTALL_LIBRARY_DIR:PATH=lib64 -Wno-dev -DENABLE_GLSL:BOOL=ON -DENABLE_PYTHON:BOOL=ON -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DPYTHON_VERSION:STRING=3.12 -DUSE_BOOST_PYTHON:BOOL=ON -DUSE_LIBARCHIVE:BOOL=ON -DENABLE_RPATH:BOOL=OFF -DENABLE_TESTING:BOOL=OFF -DUSE_MMTF:BOOL=ON -DUSE_QT:BOOL=ON -DUSE_MOLEQUEUE:BOOL=ON -DUSE_VTK:BOOL=OFF -DUSE_HDF5:BOOL=ON -DUSE_SPGLIB:BOOL=ON -DSPGLIB_LIBRARY:FILEPATH=/usr/lib64/libsymspg.so -DSPGLIB_INCLUDE_DIR:PATH=/usr/include/spglib -DBUILD_GPL_PLUGINS:BOOL=ON -DBUILD_STATIC_PLUGINS:BOOL=ON -DBUILD_DOCUMENTATION:BOOL=ON -DUSE_LIBMSYM:BOOL=OFF -- The C compiler identification is GNU 13.1.1 -- The CXX compiler identification is GNU 13.1.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE - Success -- Could NOT find Git (missing: GIT_EXECUTABLE) -- Could not use git to determine source version, using version 1.97.0 -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Found SPGLIB: /usr/include/spglib -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Found MMTF: /usr/include -- Found HDF5: /usr/lib64/libhdf5.so (found version "1.12.1") found components: C -- Found OpenGL: /usr/lib64/libOpenGL.so -- Found GLEW: /usr/include -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.12", minimum required is "3") We have dalton.py;gamessuk.py;gaussian.py;molpro.py;mopac.py;nwchem.py;orca.py;psi4.py;pyscf.py;qchem.py;terachem.py We have /builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/dalton.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/gamessuk.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/gaussian.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/molpro.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/mopac.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/nwchem.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/orca.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/psi4.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/pyscf.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/qchem.py;/builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/terachem.py -- Found LIBARCHIVE: /usr/include -- Found Doxygen: /usr/bin/doxygen (found version "1.9.7") found components: doxygen dot -- Configuring done (1.4s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP ENABLE_GLSL ENABLE_PYTHON INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR USE_BOOST_PYTHON USE_MOLEQUEUE -- Build files have been written to: /builddir/build/BUILD/avogadrolibs-1.97.0/build + /usr/bin/make -O -j2 V=1 VERBOSE=1 -C build make: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/cmake -S/builddir/build/BUILD/avogadrolibs-1.97.0 -B/builddir/build/BUILD/avogadrolibs-1.97.0/build --check-build-system CMakeFiles/Makefile.cmake 0 make: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadrolibs-1.97.0/build/CMakeFiles /builddir/build/BUILD/avogadrolibs-1.97.0/build//CMakeFiles/progress.marks make: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f utilities/bodr/CMakeFiles/bodrparse.dir/build.make utilities/bodr/CMakeFiles/bodrparse.dir/depend /usr/bin/make -f utilities/encodefile/CMakeFiles/encodefile.dir/build.make utilities/encodefile/CMakeFiles/encodefile.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/bodr /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/bodr /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/bodr/CMakeFiles/bodrparse.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f utilities/bodr/CMakeFiles/bodrparse.dir/build.make utilities/bodr/CMakeFiles/bodrparse.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/encodefile/CMakeFiles/encodefile.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f utilities/encodefile/CMakeFiles/encodefile.dir/build.make utilities/encodefile/CMakeFiles/encodefile.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 0%] Building CXX object utilities/encodefile/CMakeFiles/encodefile.dir/encodefile.cxx.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/encodefile && /usr/bin/g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT utilities/encodefile/CMakeFiles/encodefile.dir/encodefile.cxx.o -MF CMakeFiles/encodefile.dir/encodefile.cxx.o.d -o CMakeFiles/encodefile.dir/encodefile.cxx.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/encodefile/encodefile.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 1%] Linking CXX executable ../../bin/encodefile cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/encodefile && /usr/bin/cmake -E cmake_link_script CMakeFiles/encodefile.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/encodefile.dir/encodefile.cxx.o -o ../../bin/encodefile make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 1%] Built target encodefile make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f utilities/resdata/CMakeFiles/resdataparse.dir/build.make utilities/resdata/CMakeFiles/resdataparse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/resdata /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/resdata/CMakeFiles/resdataparse.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f utilities/resdata/CMakeFiles/resdataparse.dir/build.make utilities/resdata/CMakeFiles/resdataparse.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 1%] Building CXX object utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/resdata && /usr/bin/g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT utilities/resdata/CMakeFiles/resdataparse.dir/resdataparse.cxx.o -MF CMakeFiles/resdataparse.dir/resdataparse.cxx.o.d -o CMakeFiles/resdataparse.dir/resdataparse.cxx.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx: In function 'int main(int, char**)': /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:129:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 129 | for (i = 0; i < atoms.size(); ++i) { | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:131:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 131 | if (i != atoms.size() - 1) | ~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:136:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::__cxx11::basic_string > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 136 | for (i = 0; i < singleBonds.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:139:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::__cxx11::basic_string > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 139 | if (i != singleBonds.size() - 1) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:144:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::__cxx11::basic_string > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 144 | for (i = 0; i < doubleBonds.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:147:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector, std::__cxx11::basic_string > >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 147 | if (i != doubleBonds.size() - 1) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:181:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 181 | for (int j = 0; j < residueClassNames.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata/resdataparse.cxx:184:11: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 184 | if (j != residueClassNames.size() - 1) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 1%] Linking CXX executable ../../bin/resdataparse cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/resdata && /usr/bin/cmake -E cmake_link_script CMakeFiles/resdataparse.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/resdataparse.dir/resdataparse.cxx.o -o ../../bin/resdataparse make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 1%] Built target resdataparse make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f thirdparty/struct/CMakeFiles/struct.dir/build.make thirdparty/struct/CMakeFiles/struct.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/struct /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/struct/CMakeFiles/struct.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f thirdparty/struct/CMakeFiles/struct.dir/build.make thirdparty/struct/CMakeFiles/struct.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 1%] Building C object thirdparty/struct/CMakeFiles/struct.dir/struct.c.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/struct && /usr/bin/gcc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -fPIC -MD -MT thirdparty/struct/CMakeFiles/struct.dir/struct.c.o -MF CMakeFiles/struct.dir/struct.c.o.d -o CMakeFiles/struct.dir/struct.c.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct/struct.c make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 1%] Building C object thirdparty/struct/CMakeFiles/struct.dir/struct_endian.c.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/struct && /usr/bin/gcc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -fPIC -MD -MT thirdparty/struct/CMakeFiles/struct.dir/struct_endian.c.o -MF CMakeFiles/struct.dir/struct_endian.c.o.d -o CMakeFiles/struct.dir/struct_endian.c.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct/struct_endian.c make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 2%] Linking C static library libstruct.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/struct && /usr/bin/cmake -P CMakeFiles/struct.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/struct && /usr/bin/cmake -E cmake_link_script CMakeFiles/struct.dir/link.txt --verbose=1 /usr/bin/ar qc libstruct.a CMakeFiles/struct.dir/struct.c.o CMakeFiles/struct.dir/struct_endian.c.o /usr/bin/ranlib libstruct.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 2%] Built target struct make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f thirdparty/libgwavi/CMakeFiles/gwavi.dir/build.make thirdparty/libgwavi/CMakeFiles/gwavi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/libgwavi /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/libgwavi/CMakeFiles/gwavi.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f thirdparty/libgwavi/CMakeFiles/gwavi.dir/build.make thirdparty/libgwavi/CMakeFiles/gwavi.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 2%] Building C object thirdparty/libgwavi/CMakeFiles/gwavi.dir/gwavi.c.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/libgwavi && /usr/bin/gcc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -fPIC -MD -MT thirdparty/libgwavi/CMakeFiles/gwavi.dir/gwavi.c.o -MF CMakeFiles/gwavi.dir/gwavi.c.o.d -o CMakeFiles/gwavi.dir/gwavi.c.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi/gwavi.c make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 2%] Building C object thirdparty/libgwavi/CMakeFiles/gwavi.dir/fileio.c.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/libgwavi && /usr/bin/gcc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -fPIC -MD -MT thirdparty/libgwavi/CMakeFiles/gwavi.dir/fileio.c.o -MF CMakeFiles/gwavi.dir/fileio.c.o.d -o CMakeFiles/gwavi.dir/fileio.c.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi/fileio.c make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 2%] Building C object thirdparty/libgwavi/CMakeFiles/gwavi.dir/avi-utils.c.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/libgwavi && /usr/bin/gcc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -fPIC -MD -MT thirdparty/libgwavi/CMakeFiles/gwavi.dir/avi-utils.c.o -MF CMakeFiles/gwavi.dir/avi-utils.c.o.d -o CMakeFiles/gwavi.dir/avi-utils.c.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi/avi-utils.c make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 2%] Linking C static library libgwavi.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/libgwavi && /usr/bin/cmake -P CMakeFiles/gwavi.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/libgwavi && /usr/bin/cmake -E cmake_link_script CMakeFiles/gwavi.dir/link.txt --verbose=1 /usr/bin/ar qc libgwavi.a CMakeFiles/gwavi.dir/gwavi.c.o CMakeFiles/gwavi.dir/fileio.c.o "CMakeFiles/gwavi.dir/avi-utils.c.o" /usr/bin/ranlib libgwavi.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 2%] Built target gwavi make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/core/CMakeFiles/AvogadroCore.dir/build.make avogadro/core/CMakeFiles/AvogadroCore.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core/CMakeFiles/AvogadroCore.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/core/CMakeFiles/AvogadroCore.dir/build.make avogadro/core/CMakeFiles/AvogadroCore.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 2%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/angleiterator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/angleiterator.cpp.o -MF CMakeFiles/AvogadroCore.dir/angleiterator.cpp.o.d -o CMakeFiles/AvogadroCore.dir/angleiterator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 0%] Building CXX object utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/bodr && /usr/bin/g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT utilities/bodr/CMakeFiles/bodrparse.dir/bodrparse.cxx.o -MF CMakeFiles/bodrparse.dir/bodrparse.cxx.o.d -o CMakeFiles/bodrparse.dir/bodrparse.cxx.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/bodr/bodrparse.cxx make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 3%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/atomutilities.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/atomutilities.cpp.o -MF CMakeFiles/AvogadroCore.dir/atomutilities.cpp.o.d -o CMakeFiles/AvogadroCore.dir/atomutilities.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomutilities.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomutilities.cpp: In static member function 'static Avogadro::Vector3 Avogadro::Core::AtomUtilities::generateNewBondVector(const Avogadro::Core::Atom&, const std::vector, std::allocator > >&, Avogadro::Core::AtomHybridization)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomutilities.cpp:109:10: warning: variable 'noA2' set but not used [-Wunused-but-set-variable] 109 | bool noA2 = false; | ^~~~ In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomutilities.cpp:8: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mdlvalence_p.h: At global scope: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mdlvalence_p.h:19:21: warning: 'unsigned int Avogadro::Core::atomValence(unsigned char, int, unsigned int)' defined but not used [-Wunused-function] 19 | static unsigned int atomValence(const unsigned char atomicNumber, | ^~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 3%] Linking CXX executable ../../bin/bodrparse cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/bodr && /usr/bin/cmake -E cmake_link_script CMakeFiles/bodrparse.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/bodrparse.dir/bodrparse.cxx.o -o ../../bin/bodrparse make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 3%] Built target bodrparse make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 3%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o -MF CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o.d -o CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp In file included from /usr/include/c++/13/istream:41, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:6: In function 'std::operator<< >(std::basic_ostream >&, char const*)std::basic_ostream >&', inlined from 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:138:69: /usr/include/c++/13/ostream:664:7: warning: 'symbol' may be used uninitialized [-Wmaybe-uninitialized] 664 | if (!__s) | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp: In member function 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:67:15: note: 'symbol' was declared here 67 | const char* symbol; | ^~~~~~ In function 'std::operator<< >(std::basic_ostream >&, char const*)std::basic_ostream >&', inlined from 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:141:67: /usr/include/c++/13/ostream:664:7: warning: 'name' may be used uninitialized [-Wmaybe-uninitialized] 664 | if (!__s) | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp: In member function 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:68:15: note: 'name' was declared here 68 | const char* name; | ^~~~ In file included from /usr/include/eigen3/Eigen/Core:257, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:8: In member function 'Eigen::internal::mul_assign_op::assignCoeff(double&, double const&) const', inlined from 'Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeff(long, long)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:654:26, inlined from 'Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeffByOuterInner(long, long)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from 'Eigen::internal::copy_using_evaluator_DefaultTraversal_CompleteUnrolling >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 2, 3>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:211:35, inlined from 'Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 3, 2>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:456:92, inlined from 'Eigen::internal::call_dense_assignment_loop, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from 'Eigen::internal::Assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from 'Eigen::internal::call_assignment_no_alias, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from 'Eigen::internal::call_assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&, Eigen::internal::enable_if, Eigen::Matrix >, Eigen::internal::evaluator_traits, Eigen::Matrix > >::Shape>::value, void*>::type)void' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:858:27, inlined from 'Eigen::DenseBase >::operator*=(double const&)' at /usr/include/eigen3/Eigen/src/Core/SelfCwiseBinaryOp.h:20:28, inlined from 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:107:18: /usr/include/eigen3/Eigen/src/Core/functors/AssignmentFunctors.h:92:102: warning: 'MEM[(double &)&pos3d + 16]' may be used uninitialized [-Wmaybe-uninitialized] 92 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void assignCoeff(DstScalar& a, const SrcScalar& b) const { a *= b; } | ~~^~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/rendering/CMakeFiles/AvogadroRendering.dir/build.make avogadro/rendering/CMakeFiles/AvogadroRendering.dir/depend /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp: In member function 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:69:11: note: 'MEM[(double &)&pos3d + 16]' was declared here 69 | Vector3 pos3d; | ^~~~~ In member function 'std::basic_ostream >::operator<<(double)', inlined from 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:164:76: /usr/include/c++/13/ostream:223:25: warning: 'MEM[(Scalar &)&fpos3d]' may be used uninitialized [-Wmaybe-uninitialized] 223 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp: In member function 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:70:11: note: 'MEM[(Scalar &)&fpos3d]' was declared here 70 | Vector3 fpos3d; | ^~~~~~ In member function 'std::basic_ostream >::operator<<(double)', inlined from 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:172:76: /usr/include/c++/13/ostream:223:25: warning: 'MEM[(Scalar &)&fpos3d + 8]' may be used uninitialized [-Wmaybe-uninitialized] 223 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp: In member function 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:70:11: note: 'MEM[(Scalar &)&fpos3d + 8]' was declared here 70 | Vector3 fpos3d; | ^~~~~~ In member function 'std::basic_ostream >::operator<<(double)', inlined from 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:180:76: /usr/include/c++/13/ostream:223:25: warning: 'MEM[(Scalar &)&fpos3d + 16]' may be used uninitialized [-Wmaybe-uninitialized] 223 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp: In member function 'Avogadro::Core::CoordinateBlockGenerator::generateCoordinateBlock[abi:cxx11]()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.cpp:70:11: note: 'MEM[(Scalar &)&fpos3d + 16]' was declared here 70 | Vector3 fpos3d; | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 3%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/textlabelbase_vs.h textlabelbase_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 4%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrow_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrow_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/arrow_vs.h arrow_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 4%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylinders_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylinders_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/cylinders_fs.h cylinders_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 4%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylinders_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylinders_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/cylinders_vs.h cylinders_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 4%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedline_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedline_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/dashedline_fs.h dashedline_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 4%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedline_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedline_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/dashedline_vs.h dashedline_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 4%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestrip_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestrip_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/linestrip_fs.h linestrip_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 5%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestrip_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestrip_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/linestrip_vs.h linestrip_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 5%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/mesh_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/mesh_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/mesh_fs.h mesh_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 5%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/mesh_opaque_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/mesh_opaque_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/mesh_opaque_fs.h mesh_opaque_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 5%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/mesh_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/mesh_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/mesh_vs.h mesh_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 5%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_bake_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_bake_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/sphere_ao_bake_fs.h sphere_ao_bake_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 5%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_bake_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_bake_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/sphere_ao_bake_vs.h sphere_ao_bake_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 5%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_depth_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_depth_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/sphere_ao_depth_fs.h sphere_ao_depth_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 6%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_depth_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_depth_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/sphere_ao_depth_vs.h sphere_ao_depth_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 6%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_render_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_render_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/sphere_ao_render_fs.h sphere_ao_render_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 6%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_render_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/sphere_ao_render_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/sphere_ao_render_vs.h sphere_ao_render_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 6%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheres_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheres_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/spheres_fs.h spheres_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 6%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheres_vs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheres_vs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/spheres_vs.h spheres_vs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Encoding /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase_fs.glsl cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && ../../bin/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase_fs.glsl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/textlabelbase_fs.h textlabelbase_fs make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/CMakeFiles/AvogadroRendering.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/rendering/CMakeFiles/AvogadroRendering.dir/build.make avogadro/rendering/CMakeFiles/AvogadroRendering.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 3%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o -MF CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o.d -o CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp In file included from /usr/include/c++/13/vector:66, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:6: In member function 'std::vector, std::allocator > >::resize(unsigned long, Eigen::Matrix const&)', inlined from 'Avogadro::Core::Array >::resize(unsigned long const&, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:177:19, inlined from 'Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, Avogadro::Core::Array > const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:676:16, inlined from 'Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, Avogadro::Core::Array > const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:666:6: /usr/include/c++/13/bits/stl_vector.h:1034:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1034 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72: /usr/include/c++/13/bits/vector.tcc: In function 'Avogadro::Core::CrystalTools::setFractionalCoordinates(Avogadro::Core::Molecule&, Avogadro::Core::Array > const&)': /usr/include/c++/13/bits/vector.tcc:529:5: note: by argument 4 of type 'const struct value_type &' to 'std::vector, std::allocator > >::_M_fill_insert(__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned long, Eigen::Matrix const&)' declared here 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:676:16: note: '' declared here 676 | output.resize(coords.size()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ In member function 'std::vector, std::allocator > >::resize(unsigned long, Eigen::Matrix const&)', inlined from 'Avogadro::Core::Array >::resize(unsigned long const&, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:177:19, inlined from 'Avogadro::Core::CrystalTools::fractionalCoordinates(Avogadro::Core::Molecule const&, Avogadro::Core::Array >&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:647:16, inlined from 'Avogadro::Core::CrystalTools::fractionalCoordinates(Avogadro::Core::Molecule const&, Avogadro::Core::Array >&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:640:6: /usr/include/c++/13/bits/stl_vector.h:1034:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1034 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In function 'Avogadro::Core::CrystalTools::fractionalCoordinates(Avogadro::Core::Molecule const&, Avogadro::Core::Array >&)': /usr/include/c++/13/bits/vector.tcc:529:5: note: by argument 4 of type 'const struct value_type &' to 'std::vector, std::allocator > >::_M_fill_insert(__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned long, Eigen::Matrix const&)' declared here 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.cpp:647:16: note: '' declared here 647 | coords.resize(molecule.atomCount()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/beziergeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/beziergeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/beziergeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/beziergeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/beziergeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/beziergeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/beziergeometry.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'bool Avogadro::Rendering::Line::flat' [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'Avogadro::Rendering::Line::flat' will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line(float)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/cube.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/cube.cpp.o -MF CMakeFiles/AvogadroCore.dir/cube.cpp.o.d -o CMakeFiles/AvogadroCore.dir/cube.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/elements.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/elements.cpp.o -MF CMakeFiles/AvogadroCore.dir/elements.cpp.o.d -o CMakeFiles/AvogadroCore.dir/elements.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elements.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o -MF CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/bsplinegeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/bsplinegeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/bsplinegeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/bsplinegeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'bool Avogadro::Rendering::Line::flat' [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'Avogadro::Rendering::Line::flat' will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line(float)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.cpp: In member function 'virtual Avogadro::Vector3f Avogadro::Rendering::BSplineGeometry::computeCurvePoint(float, const std::__cxx11::list&) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.cpp:54:23: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 54 | else if (startIndex > size - 2 * lookahead) startIndex = size - 2 * lookahead; | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/dihedraliterator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/dihedraliterator.cpp.o -MF CMakeFiles/AvogadroCore.dir/dihedraliterator.cpp.o.d -o CMakeFiles/AvogadroCore.dir/dihedraliterator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.cpp: In member function 'Avogadro::Core::Dihedral Avogadro::Core::DihedralIterator::begin()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.cpp:38:16: warning: unused variable 'd' [-Wunused-variable] 38 | Index a, d; | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.cpp: In member function 'Avogadro::Core::Dihedral Avogadro::Core::DihedralIterator::operator++()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.cpp:118:18: warning: unused variable 'd' [-Wunused-variable] 118 | Index a, d; | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.cpp:74:9: warning: unused variable 'count' [-Wunused-variable] 74 | Index count = m_mol->atomCount(); | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 8%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/cartoongeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/cartoongeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/cartoongeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/cartoongeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'bool Avogadro::Rendering::Line::flat' [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'Avogadro::Rendering::Line::flat' will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line(float)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:12: In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8, inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:46:21: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&vert1].m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp: In member function 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:43:23: note: 'vert1' declared here 43 | ColorNormalVertex vert1; | ^~~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:46:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert1].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp: In member function 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:43:23: note: 'vert1' declared here 43 | ColorNormalVertex vert1; | ^~~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:46:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert1].padding' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp: In member function 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:43:23: note: 'vert1' declared here 43 | ColorNormalVertex vert1; | ^~~~~ In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8, inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:51:21: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&vert2].m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp: In member function 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:48:23: note: 'vert2' declared here 48 | ColorNormalVertex vert2; | ^~~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:51:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert2].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp: In member function 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:48:23: note: 'vert2' declared here 48 | ColorNormalVertex vert2; | ^~~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:51:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert2].padding' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp: In member function 'Avogadro::Rendering::Cartoon::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.cpp:48:23: note: 'vert2' declared here 48 | ColorNormalVertex vert2; | ^~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o -MF CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o.d -o CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o -MF CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o.d -o CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussiansettools.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/camera.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/camera.cpp.o -MF CMakeFiles/AvogadroRendering.dir/camera.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/camera.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/camera.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/graph.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/graph.cpp.o -MF CMakeFiles/AvogadroCore.dir/graph.cpp.o.d -o CMakeFiles/AvogadroCore.dir/graph.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp: In member function 'void Avogadro::Core::Graph::updateSubgraphs() const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:532:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 532 | for (int i = 0; i < m_subgraphToVertices.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp: In member function 'Avogadro::Core::Graph::removeEdge(unsigned long, unsigned long)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:311:5: warning: 'edgeIndex' may be used uninitialized [-Wmaybe-uninitialized] 311 | if (m_edgeMap[b][i] == edgeIndex) { | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:299:10: note: 'edgeIndex' was declared here 299 | size_t edgeIndex; | ^~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp: In member function 'Avogadro::Core::Graph::swapEdgeIndices(unsigned long, unsigned long)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:421:17: warning: 'MEM[(long unsigned int * &)&changeTo2]' may be used uninitialized [-Wmaybe-uninitialized] 421 | *changeTo2[0] = edgeIndex2; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:392:26: note: 'MEM[(long unsigned int * &)&changeTo2]' was declared here 392 | std::array changeTo2; | ^~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:422:17: warning: 'MEM[(long unsigned int * &)&changeTo2 + 8]' may be used uninitialized [-Wmaybe-uninitialized] 422 | *changeTo2[1] = edgeIndex2; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:392:26: note: 'MEM[(long unsigned int * &)&changeTo2 + 8]' was declared here 392 | std::array changeTo2; | ^~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:423:17: warning: 'MEM[(long unsigned int * &)&changeTo1]' may be used uninitialized [-Wmaybe-uninitialized] 423 | *changeTo1[0] = edgeIndex1; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:405:26: note: 'MEM[(long unsigned int * &)&changeTo1]' was declared here 405 | std::array changeTo1; | ^~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:424:17: warning: 'MEM[(long unsigned int * &)&changeTo1 + 8]' may be used uninitialized [-Wmaybe-uninitialized] 424 | *changeTo1[1] = edgeIndex1; | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.cpp:405:26: note: 'MEM[(long unsigned int * &)&changeTo1 + 8]' was declared here 405 | std::array changeTo1; | ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/layer.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/layer.cpp.o -MF CMakeFiles/AvogadroCore.dir/layer.cpp.o.d -o CMakeFiles/AvogadroCore.dir/layer.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layer.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/layermanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/layermanager.cpp.o -MF CMakeFiles/AvogadroCore.dir/layermanager.cpp.o.d -o CMakeFiles/AvogadroCore.dir/layermanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/curvegeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/curvegeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/curvegeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/curvegeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'bool Avogadro::Rendering::Line::flat' [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'Avogadro::Rendering::Line::flat' will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line(float)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:56:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert1].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function 'Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:52:23: note: 'vert1' declared here 52 | ColorNormalVertex vert1; | ^~~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:56:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert1].padding' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function 'Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:52:23: note: 'vert1' declamake[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' red here 52 | ColorNormalVertex vert1; | ^~~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:62:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert2].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function 'Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:58:23: note: 'vert2' declared here 58 | ColorNormalVertex vert2; | ^~~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:62:21: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert2].padding' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function 'Avogadro::Rendering::CurveGeometry::computeCirclePoints(Eigen::Transform const&, Eigen::Transform const&, bool) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:58:23: note: 'vert2' declared here 58 | ColorNormalVertex vert2; | ^~~~~ In file included from /usr/include/eigen3/Eigen/Core:253, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:12: In member function 'Eigen::internal::scalar_difference_op::operator()(float const&, float const&) const', inlined from 'Eigen::internal::binary_evaluator, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, float, float>::coeff(long, long) const' at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22, inlined from 'Eigen::internal::unary_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const>, Eigen::internal::IndexBased, float>::coeff(long, long) const' at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:40, inlined from 'Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::coeffByOuterInner(long, long) const' at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23, inlined from 'Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 1>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)' at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34, inlined from 'Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 3>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)' at /usr/include/eigen3/Eigen/src/Core/Redux.h:110:78, inlined from 'Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 3, 2>::run, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> const&)float' at /usr/include/eigen3/Eigen/src/Core/Redux.h:350:65, inlined from 'Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::redux >(Eigen::internal::scalar_sum_op const&) constfloat' at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from 'Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::sum() const' at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from 'Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::squaredNorm() const' at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46, inlined from 'Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::normalized() const' at /usr/include/eigen3/Eigen/src/Core/Dot.h:128:31, inlined from 'Avogadro::Rendering::CurveGeometry::update(int)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:90:45: /usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:359:130: warning: 'MEM[(float &)&previous]' may be used uninitialized [-Wmaybe-uninitialized] 359 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; } | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function 'Avogadro::Rendering::CurveGeometry::update(int)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:80:12: note: 'MEM[(float &)&previous]' was declared here 80 | Vector3f previous; | ^~~~~~~~ In member function 'Eigen::internal::scalar_difference_op::operator()(float const&, float const&) const', inlined from 'Eigen::internal::binary_evaluator, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, float, float>::coeff(long, long) const' at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22, inlined from 'Eigen::internal::unary_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const>, Eigen::internal::IndexBased, float>::coeff(long, long) const' at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:40, inlined from 'Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::coeffByOuterInner(long, long) const' at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23, inlined from 'Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 1, 1>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)' at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34, inlined from 'Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 1, 2>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)' at /usr/include/eigen3/Eigen/src/Core/Redux.h:110:78, inlined from 'Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 3>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)' at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96, inlined from 'Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 3, 2>::run, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> const&)float' at /usr/include/eigen3/Eigen/src/Core/Redux.h:350:65, inlined from 'Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::redux >(Eigen::internal::scalar_sum_op const&) constfloat' at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from 'Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::sum() const' at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from 'Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::squaredNorm() const' at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46, inlined from 'Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::normalized() const' at /usr/include/eigen3/Eigen/src/Core/Dot.h:128:31, inlined from 'Avogadro::Rendering::CurveGeometry::update(int)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:90:45: /usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:359:130: warning: 'MEM[(float &)&previous + 4]' may be used uninitialized [-Wmaybe-uninitialized] 359 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; } | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function 'Avogadro::Rendering::CurveGeometry::update(int)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:80:12: note: 'MEM[(float &)&previous + 4]' was declared here 80 | Vector3f previous; | ^~~~~~~~ In member function 'Eigen::internal::scalar_difference_op::operator()(float const&, float const&) const', inlined from 'Eigen::internal::binary_evaluator, Eigen::Matrix const, Eigen::Matrix const>, Eigen::internal::IndexBased, Eigen::internal::IndexBased, float, float>::coeff(long, long) const' at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:769:22, inlined from 'Eigen::internal::unary_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const>, Eigen::internal::IndexBased, float>::coeff(long, long) const' at /usr/include/eigen3/Eigen/src/Core/CoreEvaluators.h:583:40, inlined from 'Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::coeffByOuterInner(long, long) const' at /usr/include/eigen3/Eigen/src/Core/Redux.h:381:23, inlined from 'Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 2, 1>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)' at /usr/include/eigen3/Eigen/src/Core/Redux.h:128:34, inlined from 'Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 1, 2>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)' at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96, inlined from 'Eigen::internal::redux_novec_unroller, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 0, 3>::run(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&)' at /usr/include/eigen3/Eigen/src/Core/Redux.h:111:96, inlined from 'Eigen::internal::redux_impl, Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >, 3, 2>::run, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >(Eigen::internal::redux_evaluator, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> > const&, Eigen::internal::scalar_sum_op const&, Eigen::CwiseUnaryOp, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> const&)float' at /usr/include/eigen3/Eigen/src/Core/Redux.h:350:65, inlined from 'Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::redux >(Eigen::internal::scalar_sum_op const&) constfloat' at /usr/include/eigen3/Eigen/src/Core/Redux.h:418:56, inlined from 'Eigen::DenseBase, Eigen::CwiseBinaryOp, Eigen::Matrix const, Eigen::Matrix const> const> >::sum() const' at /usr/include/eigen3/Eigen/src/Core/Redux.h:463:25, inlined from 'Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::squaredNorm() const' at /usr/include/eigen3/Eigen/src/Core/Dot.h:98:46, inlined from 'Eigen::MatrixBase, Eigen::Matrix const, Eigen::Matrix const> >::normalized() const' at /usr/include/eigen3/Eigen/src/Core/Dot.h:128:31, inlined from 'Avogadro::Rendering::CurveGeometry::update(int)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:90:45: /usr/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h:359:130: warning: 'MEM[(float &)&previous + 8]' may be used uninitialized [-Wmaybe-uninitialized] 359 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE const result_type operator() (const LhsScalar& a, const RhsScalar& b) const { return a - b; } | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp: In member function 'Avogadro::Rendering::CurveGeometry::update(int)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.cpp:80:12: note: 'MEM[(float &)&previous + 8]' was declared here 80 | Vector3f previous; | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/mesh.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/mesh.cpp.o -MF CMakeFiles/AvogadroCore.dir/mesh.cpp.o.d -o CMakeFiles/AvogadroCore.dir/mesh.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.cpp In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.h:13, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.cpp:6: In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void' at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from 'std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from 'std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from 'std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from 'std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from 'std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)' at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from 'std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)' at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from 'Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from 'Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from 'Avogadro::Core::Mesh::smooth(int)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.cpp:189:46: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&D.195568].m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.cpp: In member function 'Avogadro::Core::Mesh::smooth(int)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.cpp:189:46: note: '' declared here 189 | Array planarList(m_vertices.size()); | ^ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 9%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::CylinderGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:117:35: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp: In member function 'Avogadro::Rendering::CylinderGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:110:25: note: 'vert' declared here 110 | ColorNormalVertex vert(itCylinder->color, -direction, position1); | ^~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::CylinderGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:117:35: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert].padding' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp: In member function 'Avogadro::Rendering::CylinderGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:110:25: note: 'vert' declared here 110 | ColorNormalVertex vert(itCylinder->color, -direction, position1); | ^~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::CylinderGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:120:35: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert2].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp: In member function 'Avogadro::Rendering::CylinderGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:111:25: note: 'vert2' declared here 111 | ColorNormalVertex vert2(itCylinder->color2, -direction, position1); | ^~~~~ In member function 'Avogadro::Rendering::ColorNormalVertex::ColorNormalVertex(Avogadro::Rendering::ColorNormalVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' std::allocator&, Avogadro::Rendering::ColorNormalVertex*, Avogadro::Rendering::ColorNormalVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorNormalVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::CylinderGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:120:35: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:67:8: warning: 'MEM[(const struct ColorNormalVertex &)&vert2].padding' may be used uninitialized [-Wmaybe-uninitialized] 67 | struct ColorNormalVertex | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp: In member function 'Avogadro::Rendering::CylinderGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.cpp:111:25: note: 'vert2' declared here 111 | ColorNormalVertex vert2(itCylinder->color2, -direction, position1); | ^~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 10%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/dashedlinegeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/dashedlinegeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/dashedlinegeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/dashedlinegeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 10%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/drawable.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/drawable.cpp.o -MF CMakeFiles/AvogadroRendering.dir/drawable.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/drawable.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/geometrynode.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/geometrynode.cpp.o -MF CMakeFiles/AvogadroRendering.dir/geometrynode.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/geometrynode.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometrynode.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/geometryvisitor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/geometryvisitor.cpp.o -MF CMakeFiles/AvogadroRendering.dir/geometryvisitor.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/geometryvisitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'bool Avogadro::Rendering::Line::flat' [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'Avogadro::Rendering::Line::flat' will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line(float)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/groupnode.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/groupnode.cpp.o -MF CMakeFiles/AvogadroRendering.dir/groupnode.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/groupnode.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/glrenderer.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/glrenderer.cpp.o -MF CMakeFiles/AvogadroRendering.dir/glrenderer.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/glrenderer.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/glrendervisitor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/glrendervisitor.cpp.o -MF CMakeFiles/AvogadroRendering.dir/glrendervisitor.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/glrendervisitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'bool Avogadro::Rendering::Line::flat' [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'Avogadro::Rendering::Line::flat' will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line(float)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/linestripgeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/linestripgeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/linestripgeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/linestripgeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 10%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/molecule.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/molecule.cpp.o -MF CMakeFiles/AvogadroCore.dir/molecule.cpp.o.d -o CMakeFiles/AvogadroCore.dir/molecule.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h: In copy constructor 'Avogadro::Core::Molecule::Molecule(const Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:734:24: warning: 'Avogadro::Core::Molecule::m_atomicNumbers' will be initialized after [-Wreorder] 734 | Array m_atomicNumbers; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:727:18: warning: 'short unsigned int Avogadro::Core::Molecule::m_hallNumber' [-Wreorder] 727 | unsigned short m_hallNumber = 0; | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.cpp:34:1: warning: when initialized here [-Wreorder] 34 | Molecule::Molecule(const Molecule& other) | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h: In constructor 'Avogadro::Core::Molecule::Molecule(Avogadro::Core::Molecule&&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:734:24: warning: 'Avogadro::Core::Molecule::m_atomicNumbers' will be initialized after [-Wreorder] 734 | Array m_atomicNumbers; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:727:18: warning: 'short unsigned int Avogadro::Core::Molecule::m_hallNumber' [-Wreorder] 727 | unsigned short m_hallNumber = 0; | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.cpp:75:1: warning: when initialized here [-Wreorder] 75 | Molecule::Molecule(Molecule&& other) noexcept | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.cpp: In member function 'void Avogadro::Core::Molecule::setPartialCharges(const std::string&, const Avogadro::MatrixX&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.cpp:248:20: warning: comparison of integer expressions of different signedness: 'Eigen::EigenBase >::Index' {aka 'long int'} and 'Avogadro::Index' {aka 'long unsigned int'} [-Wsign-compare] 248 | if (value.size() != atomCount()) | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/mutex.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/mutex.cpp.o -MF CMakeFiles/AvogadroCore.dir/mutex.cpp.o.d -o CMakeFiles/AvogadroCore.dir/mutex.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mutex.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/meshgeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/meshgeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/meshgeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/meshgeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/node.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/node.cpp.o -MF CMakeFiles/AvogadroRendering.dir/node.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/node.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/nameatomtyper.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/nameatomtyper.cpp.o -MF CMakeFiles/AvogadroCore.dir/nameatomtyper.cpp.o.d -o CMakeFiles/AvogadroCore.dir/nameatomtyper.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/nameatomtyper.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/neighborperceiver.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/neighborperceiver.cpp.o -MF CMakeFiles/AvogadroCore.dir/neighborperceiver.cpp.o.d -o CMakeFiles/AvogadroCore.dir/neighborperceiver.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/neighborperceiver.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/povrayvisitor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/povrayvisitor.cpp.o -MF CMakeFiles/AvogadroRendering.dir/povrayvisitor.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/povrayvisitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/scene.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/scene.cpp.o -MF CMakeFiles/AvogadroRendering.dir/scene.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/scene.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/shader.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/shader.cpp.o -MF CMakeFiles/AvogadroRendering.dir/shader.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/shader.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/shaderprogram.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/shaderprogram.cpp.o -MF CMakeFiles/AvogadroRendering.dir/shaderprogram.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/shaderprogram.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.cpp: In member function 'bool Avogadro::Rendering::ShaderProgram::setTextureSampler(const std::string&, const Avogadro::Rendering::Texture2D&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.cpp:280:59: warning: typedef 'TMapIter' locally defined but not used [-Wunused-local-typedefs] 280 | typedef std::map::const_iterator TMapIter; | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 13%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/spheregeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/spheregeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/spheregeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/spheregeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In member function 'Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::SphereGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:90:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: 'MEM[(const struct ColorTextureVertex &)&vert].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp: In member function 'Avogadro::Rendering::SphereGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:88:26: note: 'vert' declared here 88 | ColorTextureVertex vert(itSphere->center, itSphere->color, | ^~~~ In member function 'Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::SphereGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:92:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: 'MEM[(const struct ColorTextureVertex &)&vert].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp: In member function 'Avogadro::Rendering::SphereGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:88:26: note: 'vert' declared here 88 | ColorTextureVertex vert(itSphere->center, itSphere->color, | ^~~~ In member function 'Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::SphereGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:94:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: 'MEM[(const struct ColorTextureVertex &)&vert].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp: In member function 'Avogadro::Rendering::SphereGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:88:26: note: 'vert' declared here 88 | ColorTextureVertex vert(itSphere->center, itSphere->color, | ^~~~ In member function 'Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::SphereGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:96:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: 'MEM[(const struct ColorTextureVertex &)&vert].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp: In member function 'Avogadro::Rendering::SphereGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.cpp:88:26: note: 'vert' declared here 88 | ColorTextureVertex vert(itSphere->center, itSphere->color, | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 13%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabel2d.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabel2d.cpp.o -MF CMakeFiles/AvogadroRendering.dir/textlabel2d.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/textlabel2d.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabel2d.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 13%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabel3d.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabel3d.cpp.o -MF CMakeFiles/AvogadroRendering.dir/textlabel3d.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/textlabel3d.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabel3d.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 13%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabelbase.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textlabelbase.cpp.o -MF CMakeFiles/AvogadroRendering.dir/textlabelbase.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/textlabelbase.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 13%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textproperties.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textproperties.cpp.o -MF CMakeFiles/AvogadroRendering.dir/textproperties.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/textproperties.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 13%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textrenderstrategy.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/textrenderstrategy.cpp.o -MF CMakeFiles/AvogadroRendering.dir/textrenderstrategy.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/textrenderstrategy.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textrenderstrategy.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/texture2d.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/texture2d.cpp.o -MF CMakeFiles/AvogadroRendering.dir/texture2d.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/texture2d.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o -MF CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/transformnode.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/transformnode.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/transformnode.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/visitor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/visitor.cpp.o -MF CMakeFiles/AvogadroRendering.dir/visitor.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/visitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/volumegeometry.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o -MF CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.cpp: In member function 'void Avogadro::Rendering::VRMLVisitor::begin()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.cpp:62:12: warning: variable 'cameraX' set but not used [-Wunused-but-set-variable] 62 | Vector3f cameraX = | ^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.cpp:64:12: warning: variable 'cameraY' set but not used [-Wunused-but-set-variable] 64 | Vector3f cameraY = | ^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.cpp:66:12: warning: variable 'cameraZ' set but not used [-Wunused-but-set-variable] 66 | Vector3f cameraZ = | ^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.cpp:71:12: warning: variable 'light0pos' set but not used [-Wunused-but-set-variable] 71 | Vector3f light0pos = | ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/residue.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/residue.cpp.o -MF CMakeFiles/AvogadroCore.dir/residue.cpp.o.d -o CMakeFiles/AvogadroCore.dir/residue.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.cpp: In function '__static_initialization_and_destruction_0()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.cpp:162:1: note: variable tracking size limit exceeded with '-fvar-tracking-assignments', retrying without 162 | } // namespace Avogadro | ^ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/rendering/CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/g++ -DAvogadroRendering_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/rendering/CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o -MF CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o.d -o CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In member function 'Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1156:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: 'MEM[(const struct ColorTextureVertex &)&vert].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp: In member function 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1150:26: note: 'vert' declared here 1150 | ColorTextureVertex vert( | ^~~~ In member function 'Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1158:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: 'MEM[(const struct ColorTextureVertex &)&vert].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp: In member function 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1150:26: note: 'vert' declared here 1150 | ColorTextureVertex vert( | ^~~~ In member function 'Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1160:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: 'MEM[(const struct ColorTextureVertex &)&vert].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp: In member function 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1150:26: note: 'vert' declared here 1150 | ColorTextureVertex vert( | ^~~~ In member function 'Avogadro::Rendering::ColorTextureVertex::ColorTextureVertex(Avogadro::Rendering::ColorTextureVertex const&)', inlined from 'std::__new_allocator::construct(Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' std::allocator_traits >::construct(std::allocator&, Avogadro::Rendering::ColorTextureVertex*, Avogadro::Rendering::ColorTextureVertex const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::Rendering::ColorTextureVertex const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1154:31: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:40:8: warning: 'MEM[(const struct ColorTextureVertex &)&vert].unusedAlign' may be used uninitialized [-Wmaybe-uninitialized] 40 | struct ColorTextureVertex | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp: In member function 'Avogadro::Rendering::AmbientOcclusionSphereGeometry::update()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.cpp:1150:26: note: 'vert' declared here 1150 | ColorTextureVertex vert( | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 14%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o -MF CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o.d -o CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.cpp:50:8: warning: 'std::size_t Avogadro::Core::{anonymous}::DistanceMatrix::operator()(std::size_t, std::size_t) const' defined but not used [-Wunused-function] 50 | size_t DistanceMatrix::operator()(size_t i, size_t j) const | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 16%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/secondarystructure.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/secondarystructure.cpp.o -MF CMakeFiles/AvogadroCore.dir/secondarystructure.cpp.o.d -o CMakeFiles/AvogadroCore.dir/secondarystructure.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp: In member function 'void Avogadro::Core::SecondaryStructureAssigner::assign(Avogadro::Core::Molecule*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp:63:22: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 63 | for (auto i = 1; i < residueCount - 1; ++i) { | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp:113:22: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 113 | for (auto i = 1; i < residueCount - 1; ++i) { | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp:131:22: warning: comparison of integer expressions of different signedness: 'int' and 'long unsigned int' [-Wsign-compare] 131 | for (auto i = 1; i < residueCount - 1; ++i) { | ~~^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp: In member function 'void Avogadro::Core::SecondaryStructureAssigner::assignBackboneHydrogenBonds()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp:217:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 217 | for (unsigned int i = 0; i < n; ++i) { | ~~^~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.cpp:221:36: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 221 | for (unsigned int j = i + 1; j < n; ++j) { | ~~^~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 15%] Linking CXX shared library ../../lib/libAvogadroRendering.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroRendering.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroRendering.so.1 -o ../../lib/libAvogadroRendering.so.1.97.0 CMakeFiles/AvogadroRendering.dir/arrowgeometry.cpp.o CMakeFiles/AvogadroRendering.dir/beziergeometry.cpp.o CMakeFiles/AvogadroRendering.dir/bufferobject.cpp.o CMakeFiles/AvogadroRendering.dir/bsplinegeometry.cpp.o CMakeFiles/AvogadroRendering.dir/cartoongeometry.cpp.o CMakeFiles/AvogadroRendering.dir/camera.cpp.o CMakeFiles/AvogadroRendering.dir/curvegeometry.cpp.o CMakeFiles/AvogadroRendering.dir/cylindergeometry.cpp.o CMakeFiles/AvogadroRendering.dir/dashedlinegeometry.cpp.o CMakeFiles/AvogadroRendering.dir/drawable.cpp.o CMakeFiles/AvogadroRendering.dir/geometrynode.cpp.o CMakeFiles/AvogadroRendering.dir/geometryvisitor.cpp.o CMakeFiles/AvogadroRendering.dir/groupnode.cpp.o CMakeFiles/AvogadroRendering.dir/glrenderer.cpp.o CMakeFiles/AvogadroRendering.dir/glrendervisitor.cpp.o CMakeFiles/AvogadroRendering.dir/linestripgeometry.cpp.o CMakeFiles/AvogadroRendering.dir/meshgeometry.cpp.o CMakeFiles/AvogadroRendering.dir/node.cpp.o CMakeFiles/AvogadroRendering.dir/povrayvisitor.cpp.o CMakeFiles/AvogadroRendering.dir/scene.cpp.o CMakeFiles/AvogadroRendering.dir/shader.cpp.o CMakeFiles/AvogadroRendering.dir/shaderprogram.cpp.o CMakeFiles/AvogadroRendering.dir/spheregeometry.cpp.o CMakeFiles/AvogadroRendering.dir/textlabel2d.cpp.o CMakeFiles/AvogadroRendering.dir/textlabel3d.cpp.o CMakeFiles/AvogadroRendering.dir/textlabelbase.cpp.o CMakeFiles/AvogadroRendering.dir/textproperties.cpp.o CMakeFiles/AvogadroRendering.dir/textrenderstrategy.cpp.o CMakeFiles/AvogadroRendering.dir/texture2d.cpp.o CMakeFiles/AvogadroRendering.dir/transformnode.cpp.o CMakeFiles/AvogadroRendering.dir/visitor.cpp.o CMakeFiles/AvogadroRendering.dir/volumegeometry.cpp.o CMakeFiles/AvogadroRendering.dir/vrmlvisitor.cpp.o CMakeFiles/AvogadroRendering.dir/ambientocclusionspheregeometry.cpp.o -Wl,-rpath,:::::::::: /usr/lib64/libGLEW.so /usr/lib64/libGL.so /usr/lib64/libGLU.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroRendering.so.1.97.0 ../../lib/libAvogadroRendering.so.1 ../../lib/libAvogadroRendering.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 16%] Built target AvogadroRendering make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 16%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o -MF CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o.d -o CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slatersettools.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 16%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o -MF CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o.d -o CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 16%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o -MF CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o.d -o CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/symbolatomtyper.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 16%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/unitcell.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/unitcell.cpp.o -MF CMakeFiles/AvogadroCore.dir/unitcell.cpp.o.d -o CMakeFiles/AvogadroCore.dir/unitcell.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/variantmap.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/variantmap.cpp.o -MF CMakeFiles/AvogadroCore.dir/variantmap.cpp.o.d -o CMakeFiles/AvogadroCore.dir/variantmap.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variantmap.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/version.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/version.cpp.o -MF CMakeFiles/AvogadroCore.dir/version.cpp.o.d -o CMakeFiles/AvogadroCore.dir/version.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/version.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/sharedmutex.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/sharedmutex.cpp.o -MF CMakeFiles/AvogadroCore.dir/sharedmutex.cpp.o.d -o CMakeFiles/AvogadroCore.dir/sharedmutex.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/sharedmutex.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 16%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/slaterset.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/slaterset.cpp.o -MF CMakeFiles/AvogadroCore.dir/slaterset.cpp.o.d -o CMakeFiles/AvogadroCore.dir/slaterset.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Building CXX object avogadro/core/CMakeFiles/AvogadroCore.dir/avospglib.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/g++ -DAvogadroCore_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -isystem /usr/include/eigen3 -isystem /usr/include/spglib -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/avospglib.cpp.o -MF CMakeFiles/AvogadroCore.dir/avospglib.cpp.o.d -o CMakeFiles/AvogadroCore.dir/avospglib.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/avospglib.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Linking CXX shared library ../../lib/libAvogadroCore.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroCore.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroCore.so.1 -o ../../lib/libAvogadroCore.so.1.97.0 CMakeFiles/AvogadroCore.dir/angleiterator.cpp.o CMakeFiles/AvogadroCore.dir/atomutilities.cpp.o CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o CMakeFiles/AvogadroCore.dir/cube.cpp.o CMakeFiles/AvogadroCore.dir/elements.cpp.o CMakeFiles/AvogadroCore.dir/dihedraliterator.cpp.o CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o CMakeFiles/AvogadroCore.dir/graph.cpp.o CMakeFiles/AvogadroCore.dir/layer.cpp.o CMakeFiles/AvogadroCore.dir/layermanager.cpp.o CMakeFiles/AvogadroCore.dir/mesh.cpp.o CMakeFiles/AvogadroCore.dir/molecule.cpp.o CMakeFiles/AvogadroCore.dir/mutex.cpp.o CMakeFiles/AvogadroCore.dir/nameatomtyper.cpp.o CMakeFiles/AvogadroCore.dir/neighborperceiver.cpp.o CMakeFiles/AvogadroCore.dir/residue.cpp.o CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o CMakeFiles/AvogadroCore.dir/secondarystructure.cpp.o CMakeFiles/AvogadroCore.dir/slaterset.cpp.o CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o CMakeFiles/AvogadroCore.dir/unitcell.cpp.o CMakeFiles/AvogadroCore.dir/variantmap.cpp.o CMakeFiles/AvogadroCore.dir/version.cpp.o CMakeFiles/AvogadroCore.dir/sharedmutex.cpp.o CMakeFiles/AvogadroCore.dir/avospglib.cpp.o -Wl,-rpath,:::::::::: /usr/lib64/libsymspg.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroCore.so.1.97.0 ../../lib/libAvogadroCore.so.1 ../../lib/libAvogadroCore.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.cpp: In function '__static_initialization_and_destruction_0': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.cpp:162:1: note: variable tracking size limit exceeded with '-fvar-tracking-assignments', retrying without 162 | } // namespace Avogadro | ^ make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Built target AvogadroCore make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/calc/CMakeFiles/AvogadroCalc.dir/build.make avogadro/calc/CMakeFiles/AvogadroCalc.dir/depend /usr/bin/make -f avogadro/io/CMakeFiles/AvogadroIO.dir/build.make avogadro/io/CMakeFiles/AvogadroIO.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc/CMakeFiles/AvogadroCalc.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/calc/CMakeFiles/AvogadroCalc.dir/build.make avogadro/calc/CMakeFiles/AvogadroCalc.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io/CMakeFiles/AvogadroIO.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/io/CMakeFiles/AvogadroIO.dir/build.make avogadro/io/CMakeFiles/AvogadroIO.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Building CXX object avogadro/calc/CMakeFiles/AvogadroCalc.dir/chargemodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc && /usr/bin/g++ -DAvogadroCalc_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/AvogadroCalc.dir/chargemodel.cpp.o -MF CMakeFiles/AvogadroCalc.dir/chargemodel.cpp.o.d -o CMakeFiles/AvogadroCalc.dir/chargemodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Building CXX object avogadro/calc/CMakeFiles/AvogadroCalc.dir/chargemanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc && /usr/bin/g++ -DAvogadroCalc_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/AvogadroCalc.dir/chargemanager.cpp.o -MF CMakeFiles/AvogadroCalc.dir/chargemanager.cpp.o.d -o CMakeFiles/AvogadroCalc.dir/chargemanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Building CXX object avogadro/calc/CMakeFiles/AvogadroCalc.dir/defaultmodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc && /usr/bin/g++ -DAvogadroCalc_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/calc/CMakeFiles/AvogadroCalc.dir/defaultmodel.cpp.o -MF CMakeFiles/AvogadroCalc.dir/defaultmodel.cpp.o.d -o CMakeFiles/AvogadroCalc.dir/defaultmodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.h: In constructor 'Avogadro::Calc::DefaultModel::DefaultModel(const std::string&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.h:80:15: warning: 'Avogadro::Calc::DefaultModel::m_identifier' will be initialized after [-Wreorder] 80 | std::string m_identifier; | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.cpp:18:35: warning: base 'Avogadro::Calc::ChargeModel' [-Wreorder] 18 | : m_identifier(id), ChargeModel() | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.cpp:17:1: warning: when initialized here [-Wreorder] 17 | DefaultModel::DefaultModel(const std::string& id) | ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Linking CXX shared library ../../lib/libAvogadroCalc.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroCalc.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroCalc.so.1 -o ../../lib/libAvogadroCalc.so.1.97.0 CMakeFiles/AvogadroCalc.dir/chargemodel.cpp.o CMakeFiles/AvogadroCalc.dir/chargemanager.cpp.o CMakeFiles/AvogadroCalc.dir/defaultmodel.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib: ../../lib/libAvogadroCore.so.1.97.0 cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroCalc.so.1.97.0 ../../lib/libAvogadroCalc.so.1 ../../lib/libAvogadroCalc.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Built target AvogadroCalc make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 17%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/cjsonformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 18%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/dcdformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 18%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/fileformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/fileformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 18%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/cmlformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 18%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o -MF CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o.d -o CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.cpp: In function 'void Avogadro::Io::{anonymous}::removeFromMap(Map&, const VectorOfKeys&, const ValueType&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.cpp:166:49: warning: typedef 'KeysIter' locally defined but not used [-Wunused-local-typedefs] 166 | typedef typename VectorOfKeys::const_iterator KeysIter; | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 18%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/gromacsformat.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/gromacsformat.cpp: In member function 'Avogadro::Io::GromacsFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/gromacsformat.cpp:141:39: warning: 'r' may be used uninitialized [-Wmaybe-uninitialized] 141 | int atomicNum = r->getAtomicNumber(value); | ~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/gromacsformat.cpp:57:12: note: 'r' was declared here 57 | Residue* r; | ^ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 18%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/mdlformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 19%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/pdbformat.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/pdbformat.cpp: In member function 'Avogadro::Io::PdbFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/pdbformat.cpp:148:9: warning: 'r' may be used uninitialized [-Wmaybe-uninitialized] 148 | if (r) { | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/pdbformat.cpp:46:12: note: 'r' was declared here 46 | Residue* r; | ^ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 19%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/vaspformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 19%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/trrformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/trrformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/trrformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 19%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/xyzformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 19%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp: In member function 'virtual bool Avogadro::Io::LammpsTrajectoryFormat::read(std::istream&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:51:25: warning: variable 'id_idx' set but not used [-Wunused-but-set-variable] 51 | type_idx = -1, id_idx = -1; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:263:5: warning: 'numAtoms2' may be used uninitialized [-Wmaybe-uninitialized] 263 | if (numAtoms2 != numAtoms) { | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:226:10: note: 'numAtoms2' was declared here 226 | size_t numAtoms2; | ^~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp: In member function 'Avogadro::Io::LammpsDataFormat::write(std::basic_ostream >&, Avogadro::Core::Molecule const&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:546:13: warning: 'xmin' may be used uninitialized [-Wmaybe-uninitialized] 546 | snprintf(simBoxBlock, lineSize - 1, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 | "%10f %10f xlo xhi\n%10f %10f ylo yhi\n%10f %10f zlo zhi\n%10f " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 | "%10f %10f xy xz yz", | ~~~~~~~~~~~~~~~~~~~~~ 549 | xmin - 0.5, xmax - 0.5, ymin - 0.5, ymax - 0.5, zmin - 0.5, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | zmax - 0.5, 0.0, 0.0, 0.0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:423:10: note: 'xmin' was declared here 423 | double xmin, xmax, ymin, ymax, zmin, zmax; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:546:13: warning: 'xmax' may be used uninitialized [-Wmaybe-uninitialized] 546 | snprintf(simBoxBlock, lineSize - 1, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 | "%10f %10f xlo xhi\n%10f %10f ylo yhi\n%10f %10f zlo zhi\n%10f " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 | "%10f %10f xy xz yz", | ~~~~~~~~~~~~~~~~~~~~~ 549 | xmin - 0.5, xmax - 0.5, ymin - 0.5, ymax - 0.5, zmin - 0.5, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | zmax - 0.5, 0.0, 0.0, 0.0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:423:16: note: 'xmax' was declared here 423 | double xmin, xmax, ymin, ymax, zmin, zmax; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:546:13: warning: 'ymin' may be used uninitialized [-Wmaybe-uninitialized] 546 | snprintf(simBoxBlock, lineSize - 1, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 | "%10f %10f xlo xhi\n%10f %10f ylo yhi\n%10f %10f zlo zhi\n%10f " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 | "%10f %10f xy xz yz", | ~~~~~~~~~~~~~~~~~~~~~ 549 | xmin - 0.5, xmax - 0.5, ymin - 0.5, ymax - 0.5, zmin - 0.5, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | zmax - 0.5, 0.0, 0.0, 0.0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:423:22: note: 'ymin' was declared here 423 | double xmin, xmax, ymin, ymax, zmin, zmax; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:546:13: warning: 'ymax' may be used uninitialized [-Wmaybe-uninitialized] 546 | snprintf(simBoxBlock, lineSize - 1, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 | "%10f %10f xlo xhi\n%10f %10f ylo yhi\n%10f %10f zlo zhi\n%10f " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 | "%10f %10f xy xz yz", | ~~~~~~~~~~~~~~~~~~~~~ 549 | xmin - 0.5, xmax - 0.5, ymin - 0.5, ymax - 0.5, zmin - 0.5, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | zmax - 0.5, 0.0, 0.0, 0.0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:423:28: note: 'ymax' was declared here 423 | double xmin, xmax, ymin, ymax, zmin, zmax; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:546:13: warning: 'zmin' may be used uninitialized [-Wmaybe-uninitialized] 546 | snprintf(simBoxBlock, lineSize - 1, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 | "%10f %10f xlo xhi\n%10f %10f ylo yhi\n%10f %10f zlo zhi\n%10f " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 | "%10f %10f xy xz yz", | ~~~~~~~~~~~~~~~~~~~~~ 549 | xmin - 0.5, xmax - 0.5, ymin - 0.5, ymax - 0.5, zmin - 0.5, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | zmax - 0.5, 0.0, 0.0, 0.0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:423:34: note: 'zmin' was declared here 423 | double xmin, xmax, ymin, ymax, zmin, zmax; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:546:13: warning: 'zmax' may be used uninitialized [-Wmaybe-uninitialized] 546 | snprintf(simBoxBlock, lineSize - 1, | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 | "%10f %10f xlo xhi\n%10f %10f ylo yhi\n%10f %10f zlo zhi\n%10f " | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 | "%10f %10f xy xz yz", | ~~~~~~~~~~~~~~~~~~~~~ 549 | xmin - 0.5, xmax - 0.5, ymin - 0.5, ymax - 0.5, zmin - 0.5, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 | zmax - 0.5, 0.0, 0.0, 0.0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.cpp:423:40: note: 'zmax' was declared here 423 | double xmin, xmax, ymin, ymax, zmin, zmax; | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 19%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/turbomoleformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/turbomoleformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/turbomoleformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/turbomoleformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:10: In member function 'Avogadro::Core::UnitCell::UnitCell(double, double, double, double, double, double)', inlined from 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:166:64: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:157:20: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized] 157 | setCellParameters(a_, b_, c_, alpha_, beta_, gamma_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp: In member function 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:60:8: note: 'a' was declared here 60 | Real a, b, c, alpha, beta, gamma; | ^ In member function 'Avogadro::Core::UnitCell::UnitCell(double, double, double, double, double, double)', inlined from 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:166:64: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:157:20: warning: 'b' may be used uninitialized [-Wmaybe-uninitialized] 157 | setCellParameters(a_, b_, c_, alpha_, beta_, gamma_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp: In member function 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:60:11: note: 'b' was declared here 60 | Real a, b, c, alpha, beta, gamma; | ^ In member function 'Avogadro::Core::UnitCell::UnitCell(double, double, double, double, double, double)', inlined from 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:166:64: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:157:20: warning: 'c' may be used uninitialized [-Wmaybe-uninitialized] 157 | setCellParameters(a_, b_, c_, alpha_, beta_, gamma_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp: In member function 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:60:14: note: 'c' was declared here 60 | Real a, b, c, alpha, beta, gamma; | ^ In member function 'Avogadro::Core::UnitCell::UnitCell(double, double, double, double, double, double)', inlined from 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:166:64: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:157:20: warning: 'alpha' may be used uninitialized [-Wmaybe-uninitialized] 157 | setCellParameters(a_, b_, c_, alpha_, beta_, gamma_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp: In member function 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:60:17: note: 'alpha' was declared here 60 | Real a, b, c, alpha, beta, gamma; | ^~~~~ In member function 'Avogadro::Core::UnitCell::UnitCell(double, double, double, double, double, double)', inlined from 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:166:64: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:157:20: warning: 'beta' may be used uninitialized [-Wmaybe-uninitialized] 157 | setCellParameters(a_, b_, c_, alpha_, beta_, gamma_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp: In member function 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:60:24: note: 'beta' was declared here 60 | Real a, b, c, alpha, beta, gamma; | ^~~~ In member function 'Avogadro::Core::UnitCell::UnitCell(double, double, double, double, double, double)', inlined from 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:166:64: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:157:20: warning: 'gamma' may be used uninitialized [-Wmaybe-uninitialized] 157 | setCellParameters(a_, b_, c_, alpha_, beta_, gamma_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp: In member function 'Avogadro::Io::TurbomoleFormat::read(std::basic_istream >&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.cpp:60:30: note: 'gamma' was declared here 60 | Real a, b, c, alpha, beta, gamma; | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 20%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/hdf5dataformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/hdf5dataformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/hdf5dataformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/hdf5dataformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 20%] Building CXX object avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/g++ -DAVO_USE_HDF5 -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -DH5_USE_110_API -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/pugixml -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -MF CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o.d -o CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/mmtfformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 20%] Linking CXX shared library ../../lib/libAvogadroIO.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroIO.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroIO.so.1 -o ../../lib/libAvogadroIO.so.1.97.0 CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o CMakeFiles/AvogadroIO.dir/fileformat.cpp.o CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o CMakeFiles/AvogadroIO.dir/trrformat.cpp.o CMakeFiles/AvogadroIO.dir/turbomoleformat.cpp.o CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o CMakeFiles/AvogadroIO.dir/hdf5dataformat.cpp.o CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib: ../../lib/libAvogadroCore.so.1.97.0 ../../thirdparty/struct/libstruct.a /usr/lib64/libhdf5.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroIO.so.1.97.0 ../../lib/libAvogadroIO.so.1 ../../lib/libAvogadroIO.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 20%] Built target AvogadroIO make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build.make avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/depend /usr/bin/make -f avogadro/command/CMakeFiles/avocjsontocml.dir/build.make avogadro/command/CMakeFiles/avocjsontocml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command/CMakeFiles/avocjsontocml.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build.make avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build /usr/bin/make -f avogadro/command/CMakeFiles/avocjsontocml.dir/build.make avogadro/command/CMakeFiles/avocjsontocml.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 20%] Building CXX object avogadro/command/CMakeFiles/avocjsontocml.dir/cjsontocml.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command && /usr/bin/g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/command/CMakeFiles/avocjsontocml.dir/cjsontocml.cpp.o -MF CMakeFiles/avocjsontocml.dir/cjsontocml.cpp.o.d -o CMakeFiles/avocjsontocml.dir/cjsontocml.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command/cjsontocml.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 20%] Linking CXX executable ../../bin/avocjsontocml cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command && /usr/bin/cmake -E cmake_link_script CMakeFiles/avocjsontocml.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/avocjsontocml.dir/cjsontocml.cpp.o -o ../../bin/avocjsontocml -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib ../../lib/libAvogadroIO.so.1.97.0 ../../lib/libAvogadroCore.so.1.97.0 make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 20%] Built target avocjsontocml make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 20%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gamessus.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/g++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gamessus.cpp.o -MF CMakeFiles/AvogadroQuantumIO.dir/gamessus.cpp.o.d -o CMakeFiles/AvogadroQuantumIO.dir/gamessus.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessus.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 20%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gaussianfchk.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/g++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gaussianfchk.cpp.o -MF CMakeFiles/AvogadroQuantumIO.dir/gaussianfchk.cpp.o.d -o CMakeFiles/AvogadroQuantumIO.dir/gaussianfchk.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussianfchk.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 21%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gaussiancube.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/g++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/gaussiancube.cpp.o -MF CMakeFiles/AvogadroQuantumIO.dir/gaussiancube.cpp.o.d -o CMakeFiles/AvogadroQuantumIO.dir/gaussiancube.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussiancube.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/avobabel.dir/build.make avogadro/command/CMakeFiles/avobabel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command/CMakeFiles/avobabel.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/avobabel.dir/build.make avogadro/command/CMakeFiles/avobabel.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 21%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/molden.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/g++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer 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-I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/command/CMakeFiles/avobabel.dir/avobabel.cpp.o -MF CMakeFiles/avobabel.dir/avobabel.cpp.o.d -o CMakeFiles/avobabel.dir/avobabel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command/avobabel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Linking CXX executable ../../bin/avobabel cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command && /usr/bin/cmake -E cmake_link_script CMakeFiles/avobabel.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/avobabel.dir/avobabel.cpp.o -o ../../bin/avobabel -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib ../../lib/libAvogadroIO.so.1.97.0 ../../lib/libAvogadroCore.so.1.97.0 make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Built target avobabel make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/mopacaux.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/g++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/mopacaux.cpp.o -MF CMakeFiles/AvogadroQuantumIO.dir/mopacaux.cpp.o.d -o CMakeFiles/AvogadroQuantumIO.dir/mopacaux.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/mopacaux.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Automatic MOC for target AvogadroQtGui cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtgui/backgroundfileformat.h" AutoGen: Parsing "SRC:/avogadro/qtgui/colorbutton.h" AutoGen: Parsing "SRC:/avogadro/qtgui/containerwidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/customelementdialog.h" AutoGen: Parsing "SRC:/avogadro/qtgui/elementdetail_p.h" AutoGen: Parsing "SRC:/avogadro/qtgui/elementitem_p.h" AutoGen: Parsing "SRC:/avogadro/qtgui/elementtranslator.h" AutoGen: Parsing "SRC:/avogadro/qtgui/extensionplugin.h" AutoGen: Parsing "SRC:/avogadro/qtgui/filebrowsewidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/fileformatdialog.h" AutoGen: Parsing "SRC:/avogadro/qtgui/generichighlighter.h" AutoGen: Parsing "SRC:/avogadro/qtgui/hydrogentools.h" AutoGen: Parsing "SRC:/avogadro/qtgui/interfacescript.h" AutoGen: Parsing "SRC:/avogadro/qtgui/interfacewidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/jsonwidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/layermodel.h" AutoGen: Parsing "SRC:/avogadro/qtgui/meshgenerator.h" AutoGen: Parsing "SRC:/avogadro/qtgui/molecule.h" AutoGen: Parsing "SRC:/avogadro/qtgui/moleculemodel.h" AutoGen: Parsing "SRC:/avogadro/qtgui/multiviewwidget.h" AutoGen: Parsing "SRC:/avogadro/qtgui/periodictablescene_p.h" AutoGen: Parsing "SRC:/avogadro/qtgui/periodictableview.h" AutoGen: Parsing "SRC:/avogadro/qtgui/persistentatom.h" AutoGen: Parsing "SRC:/avogadro/qtgui/persistentbond.h" AutoGen: Parsing "SRC:/avogadro/qtgui/pluginlayermanager.h" AutoGen: Parsing "SRC:/avogadro/qtgui/pythonscript.h" AutoGen: Parsing "SRC:/avogadro/qtgui/rwlayermanager.h" AutoGen: Parsing "SRC:/avogadro/qtgui/rwmolecule.h" AutoGen: Parsing "SRC:/avogadro/qtgui/sceneplugin.h" AutoGen: Parsing "SRC:/avogadro/qtgui/scenepluginmodel.h" AutoGen: Parsing "SRC:/avogadro/qtgui/scriptloader.h" AutoGen: Parsing "SRC:/avogadro/qtgui/toolplugin.h" AutoGen: Parsing "SRC:/avogadro/qtgui/utilities.h" AutoGen: Parsing "SRC:/avogadro/qtgui/viewfactory.h" AutoGen: Parsing "SRC:/avogadro/qtgui/backgroundfileformat.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/colorbutton.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/containerwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/customelementdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/elementdetail_p.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/elementitem_p.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/elementtranslator.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/extensionplugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/filebrowsewidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/fileformatdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/generichighlighter.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/hydrogentools.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/interfacescript.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/interfacewidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/jsonwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/layermodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/meshgenerator.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/molecule.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/moleculemodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/multiviewwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/periodictablescene_p.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/periodictableview.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/pluginlayermanager.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/pythonscript.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/rwlayermanager.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/rwmolecule.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/sceneplugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/scenepluginmodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/scriptloader.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/toolplugin.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/utilities.cpp" AutoGen: Parsing "SRC:/avogadro/qtgui/viewfactory.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/backgroundfileformat.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/backgroundfileformat.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_colorbutton.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/colorbutton.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_colorbutton.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_colorbutton.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/containerwidget.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/customelementdialog.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/customelementdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_customelementdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/elementtranslator.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementtranslator.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_elementtranslator.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/extensionplugin.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_extensionplugin.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/filebrowsewidget.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_filebrowsewidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/fileformatdialog.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_fileformatdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/generichighlighter.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_generichighlighter.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_interfacescript.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/interfacescript.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_interfacescript.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacescript.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_interfacescript.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_interfacewidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/interfacewidget.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_interfacewidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_interfacewidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_jsonwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/jsonwidget.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_jsonwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_jsonwidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_layermodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/layermodel.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_layermodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_layermodel.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/meshgenerator.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_meshgenerator.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_molecule.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/molecule.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_molecule.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_molecule.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/moleculemodel.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_moleculemodel.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/multiviewwidget.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/periodictablescene_p.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictablescene_p.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_periodictablescene_p.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/periodictableview.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictableview.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_periodictableview.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/pythonscript.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_pythonscript.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/rwmolecule.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_rwmolecule.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/sceneplugin.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_sceneplugin.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/scenepluginmodel.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_scenepluginmodel.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_scriptloader.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/scriptloader.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_scriptloader.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scriptloader.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_scriptloader.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp", because it doesn't exist, from "SRC:/avogadro/qtgui/toolplugin.h" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_toolplugin.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/include/multiviewwidget.moc", because it doesn't exist, from "SRC:/avogadro/qtgui/multiviewwidget.cpp" /usr/lib64/qt5/bin/moc "-DAvogadroLibs_DATA_DIR=\"share\"" "-DAvogadroLibs_LIB_DIR=\"lib64\"" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include/multiviewwidget.moc /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/include/multiviewwidget.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtgui/AvogadroQtGui_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Built target AvogadroQtGui_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/nwchemlog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/g++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/nwchemlog.cpp.o -MF CMakeFiles/AvogadroQuantumIO.dir/nwchemlog.cpp.o.d -o CMakeFiles/AvogadroQuantumIO.dir/nwchemlog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemlog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Generating ui_customelementdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/ui_customelementdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/customelementdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Generating qrc_qtgui.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/lib64/qt5/bin/rcc --name qtgui --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/qrc_qtgui.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/qtgui.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Building CXX object avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/nwchemjson.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/g++ -DAvogadroQuantumIO_EXPORTS -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/nwchemjson.cpp.o -MF CMakeFiles/AvogadroQuantumIO.dir/nwchemjson.cpp.o.d -o CMakeFiles/AvogadroQuantumIO.dir/nwchemjson.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.cpp In file included from /usr/include/eigen3/Eigen/Core:257, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.cpp:8: In member function 'Eigen::internal::mul_assign_op::assignCoeff(double&, double const&) const', inlined from 'Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeff(long, long)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:654:26, inlined from 'Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>::assignCoeffByOuterInner(long, long)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:668:16, inlined from 'Eigen::internal::copy_using_evaluator_DefaultTraversal_CompleteUnrolling >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 2, 3>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:211:35, inlined from 'Eigen::internal::dense_assignment_loop >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>, 3, 2>::run(Eigen::internal::generic_dense_assignment_kernel >, Eigen::internal::evaluator, Eigen::Matrix > >, Eigen::internal::mul_assign_op, 0>&)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:456:92, inlined from 'Eigen::internal::call_dense_assignment_loop, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:785:37, inlined from 'Eigen::internal::Assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op, Eigen::internal::Dense2Dense, void>::run(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:954:31, inlined from 'Eigen::internal::call_assignment_no_alias, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&)void' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:890:49, inlined from 'Eigen::internal::call_assignment, Eigen::CwiseNullaryOp, Eigen::Matrix >, Eigen::internal::mul_assign_op >(Eigen::Matrix&, Eigen::CwiseNullaryOp, Eigen::Matrix > const&, Eigen::internal::mul_assign_op const&, Eigen::internal::enable_if, Eigen::Matrix >, Eigen::internal::evaluator_traits, Eigen::Matrix > >::Shape>::value, void*>::type)void' at /usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:858:27, inlined from 'Eigen::DenseBase >::operator*=(double const&)' at /usr/include/eigen3/Eigen/src/Core/SelfCwiseBinaryOp.h:20:28, inlined from 'Avogadro::QuantumIO::NWChemJson::read(std::basic_istream >&, Avogadro::Core::Molecule&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.cpp:138:21: /usr/include/eigen3/Eigen/src/Core/functors/AssignmentFunctors.h:92:102: warning: 'MEM [(struct DenseStorage *)&position + 16B]' may be used uninitialized [-Wmaybe-uninitialized] 92 | EIGEN_DEVICE_FUNC EIGEN_STRONG_INLINE void assignCoeff(DstScalar& a, const SrcScalar& b) const { a *= b; } | ~~^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.cpp: In member function 'Avogadro::QuantumIO::NWChemJson::read(std::basic_istream >&, Avogadro::Core::Molecule&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.cpp:133:15: note: 'MEM [(struct DenseStorage *)&position + 16B]' was declared here 133 | Vector3 position; | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/mocs_compilation.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_containerwidget.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/mocs_compilation.cpp:4: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/../../../../../avogadro/qtgui/containerwidget.h:30:75: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 30 | explicit ContainerWidget(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/../../../../../avogadro/qtgui/backgroundfileformat.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_backgroundfileformat.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/mocs_compilation.cpp:2: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/moc_multiviewwidget.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/mocs_compilation.cpp:18: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/EWIEGA46WW/../../../../../avogadro/qtgui/multiviewwidget.h:33:75: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 33 | explicit MultiViewWidget(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 22%] Linking CXX shared library ../../lib/libAvogadroQuantumIO.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroQuantumIO.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroQuantumIO.so.1 -o ../../lib/libAvogadroQuantumIO.so.1.97.0 CMakeFiles/AvogadroQuantumIO.dir/gamessus.cpp.o CMakeFiles/AvogadroQuantumIO.dir/gaussianfchk.cpp.o CMakeFiles/AvogadroQuantumIO.dir/gaussiancube.cpp.o CMakeFiles/AvogadroQuantumIO.dir/molden.cpp.o CMakeFiles/AvogadroQuantumIO.dir/mopacaux.cpp.o CMakeFiles/AvogadroQuantumIO.dir/nwchemjson.cpp.o CMakeFiles/AvogadroQuantumIO.dir/nwchemlog.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib: ../../lib/libAvogadroIO.so.1.97.0 ../../lib/libAvogadroCore.so.1.97.0 cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQuantumIO.so.1.97.0 ../../lib/libAvogadroQuantumIO.so.1 ../../lib/libAvogadroQuantumIO.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Built target AvogadroQuantumIO make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/qube.dir/build.make avogadro/command/CMakeFiles/qube.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command/CMakeFiles/qube.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/qube.dir/build.make avogadro/command/CMakeFiles/qube.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/backgroundfileformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/colorbutton.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/colorbutton.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/colorbutton.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/colorbutton.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Building CXX object avogadro/command/CMakeFiles/qube.dir/qube.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command && /usr/bin/g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -isystem /usr/include/eigen3 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT avogadro/command/CMakeFiles/qube.dir/qube.cpp.o -MF CMakeFiles/qube.dir/qube.cpp.o.d -o CMakeFiles/qube.dir/qube.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command/qube.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Linking CXX executable ../../bin/qube cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command && /usr/bin/cmake -E cmake_link_script CMakeFiles/qube.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/qube.dir/qube.cpp.o -o ../../bin/qube -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib ../../lib/libAvogadroQuantumIO.so.1.97.0 ../../lib/libAvogadroIO.so.1.97.0 ../../lib/libAvogadroCore.so.1.97.0 make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Built target qube make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/containerwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/containerwidget.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/containerwidget.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/containerwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:30:75: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 30 | explicit ContainerWidget(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/qt5/QtWidgets/qwidget.h:43, from /usr/include/qt5/QtWidgets/QWidget:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:11: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementdetail_p.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementdetail_p.cpp: In member function 'virtual void Avogadro::QtGui::ElementDetail::paint(QPainter*, const QStyleOptionGraphicsItem*, QWidget*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementdetail_p.cpp:72:29: warning: 'int QFontMetrics::width(const QString&, int) const' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 72 | int pixelWidth = fm2.width(symbol); | ~~~~~~~~~^~~~~~~~ In file included from /usr/include/qt5/QtGui/QFontMetrics:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementdetail_p.cpp:12: /usr/include/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementitem_p.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementitem_p.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/elementitem_p.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/elementitem_p.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementitem_p.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 24%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/customelementdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/customelementdialog.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/customelementdialog.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/customelementdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/customelementdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/extensionplugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/extensionplugin.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/extensionplugin.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/extensionplugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementtranslator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/elementtranslator.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/elementtranslator.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/elementtranslator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementtranslator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/filebrowsewidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/filebrowsewidget.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/filebrowsewidget.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/filebrowsewidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.cpp: In static member function 'static QString Avogadro::QtGui::FileBrowseWidget::searchSystemPathForFile(const QString&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.cpp:170:55: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 170 | .split(pathSplitter, QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/qobject.h:47, from /usr/include/qt5/QtWidgets/qwidget.h:45, from /usr/include/qt5/QtWidgets/QWidget:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.cpp:6: /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.cpp:170:55: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 170 | .split(pathSplitter, QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.cpp:170:31: warning: 'QStringList QString::split(const QRegExp&, SplitBehavior) const' is deprecated: Use split(const QRegularExpression &, Qt::SplitBehavior) variant instead [-Wdeprecated-declarations] 169 | QStringList paths = env.value(QStringLiteral("PATH")) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 | .split(pathSplitter, QString::SkipEmptyParts); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:622:17: note: declared here 622 | QStringList split(const QRegExp &sep, SplitBehavior behavior) const; | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/generichighlighter.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/generichighlighter.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/generichighlighter.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/generichighlighter.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.cpp: In member function 'virtual void Avogadro::QtGui::GenericHighlighter::highlightBlock(const QString&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.cpp:70:33: warning: typedef 'RuleIter' locally defined but not used [-Wunused-local-typedefs] 70 | typedef QList::iterator RuleIter; | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.cpp: In member function 'void Avogadro::QtGui::GenericHighlighter::Rule::apply(const QString&, Avogadro::QtGui::GenericHighlighter&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.cpp:78:36: warning: typedef 'PatternIter' locally defined but not used [-Wunused-local-typedefs] 78 | typedef QList::iterator PatternIter; | ^~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/fileformatdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/fileformatdialog.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/fileformatdialog.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/fileformatdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp: In static member function 'static QString Avogadro::QtGui::FileFormatDialog::generateFilterString(const std::vector&, FilterStringOptions)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp:227:28: warning: 'QList QMap::values(const Key&) const [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 227 | if (!formatMap.values(name).contains(ext)) { | ~~~~~~~~~~~~~~~~^~~~~~ In file included from /usr/include/qt5/QtCore/qvariant.h:47, from /usr/include/qt5/QtGui/qtextformat.h:48, from /usr/include/qt5/QtGui/qtextcursor.h:46, from /usr/include/qt5/QtWidgets/qlineedit.h:45, from /usr/include/qt5/QtWidgets/qinputdialog.h:45, from /usr/include/qt5/QtWidgets/QInputDialog:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp:11: /usr/include/qt5/QtCore/qmap.h:1360:10: note: declared here 1360 | QList QMap::values(const Key &key) const | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp:228:30: warning: 'QMap::iterator QMap::insertMulti(const Key&, const T&) [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 228 | formatMap.insertMulti(name, ext); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/qt5/QtCore/qmap.h:1366:33: note: declared here 1366 | typename QMap::iterator QMap::insertMulti(const Key &key, const T &value) | ^~~~~~~~~~~~ In file included from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/qt5/QtWidgets/qfiledialog.h:43, from /usr/include/qt5/QtWidgets/QFileDialog:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp:247:53: warning: 'QList QMap::uniqueKeys() const [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 247 | foreach (const QString& desc, formatMap.uniqueKeys()) { | ~~~~~~~~~~~~~~~~~~~~^~ /usr/include/qt5/QtCore/qmap.h:1354:12: note: declared here 1354 | QList QMap::uniqueKeys() const | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.cpp:249:52: warning: 'QList QMap::values(const Key&) const [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 249 | QStringList formatExtensions = formatMap.values(desc); | ~~~~~~~~~~~~~~~~^~~~~~ /usr/include/qt5/QtCore/qmap.h:1360:10: note: declared here 1360 | QList QMap::values(const Key &key) const | ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 25%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/hydrogentools.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/hydrogentools.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/hydrogentools.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/hydrogentools.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/hydrogentools.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/hydrogentools.cpp: In static member function 'static void Avogadro::QtGui::HydrogenTools::generateNewHydrogenPositions(const Avogadro::QtGui::RWAtom&, int, std::vector, std::allocator > >&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/hydrogentools.cpp:230:13: warning: unused variable 'explicitBonds' [-Wunused-variable] 230 | const int explicitBonds = bonds.size(); | ^~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/interfacescript.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/interfacescript.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/interfacescript.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/interfacescript.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacescript.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/interfacewidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/interfacewidget.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/interfacewidget.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/interfacewidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.cpp: In member function 'void Avogadro::QtGui::InterfaceWidget::showError(const QString&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.cpp:78:32: warning: 'int QFontMetrics::width(const QString&, int) const' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 78 | int charWidth = metrics.width(QStringLiteral("i7OPlmWn9/")) / 10; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtWidgets/qwidget.h:50, from /usr/include/qt5/QtWidgets/QWidget:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.h:13, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.cpp:6: /usr/include/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/layermodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/layermodel.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/layermodel.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/layermodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp: In member function 'virtual QVariant Avogadro::QtGui::LayerModel::data(const QModelIndex&, int) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp:59:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 59 | if (idx.row() == names.size()) { | ~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp:80:21: warning: comparison of integer expressions of different signedness: 'long unsigned int' and 'int' [-Wsign-compare] 80 | if (layer == static_cast(getMoleculeLayer().activeLayer())) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp: In member function 'virtual QModelIndex Avogadro::QtGui::LayerModel::index(int, int, const QModelIndex&) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp:161:25: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long unsigned int'} [-Wsign-compare] 161 | if (row >= 0 && row <= m_item) | ~~~~^~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp: In member function 'void Avogadro::QtGui::LayerModel::removeItem(int, Avogadro::QtGui::RWMolecule*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.cpp:210:11: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 210 | if (row <= m_item) { | ~~~~^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/jsonwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/jsonwidget.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/jsonwidget.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/jsonwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/meshgenerator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/meshgenerator.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/meshgenerator.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/meshgenerator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 26%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/rwlayermanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/rwlayermanager.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/rwlayermanager.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/rwlayermanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/molecule.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/molecule.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/molecule.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/molecule.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h: In constructor 'Avogadro::QtGui::Molecule::Molecule(QObject*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:262:15: warning: 'Avogadro::QtGui::Molecule::m_undoMolecule' will be initialized after [-Wreorder] 262 | RWMolecule* m_undoMolecule; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.cpp:17:65: warning: base 'Avogadro::Core::Molecule' [-Wreorder] 17 | m_undoMolecule(new RWMolecule(*this, this)), Core::Molecule() | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.cpp:15:1: warning: when initialized here [-Wreorder] 15 | Molecule::Molecule(QObject* parent_) | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/moleculemodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/moleculemodel.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/moleculemodel.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/moleculemodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/multiviewwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/multiviewwidget.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/multiviewwidget.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/multiviewwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:33:75: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 33 | explicit MultiViewWidget(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/qt5/QtWidgets/qwidget.h:43, from /usr/include/qt5/QtWidgets/QWidget:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:11: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.cpp:7: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:30:75: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 30 | explicit ContainerWidget(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h: In member function 'Avogadro::QtGui::ContainerWidget* Avogadro::QtGui::MultiViewWidget::createContainer(QWidget*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:30:75: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 30 | explicit ContainerWidget(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictablescene_p.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictablescene_p.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/periodictablescene_p.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/periodictablescene_p.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictablescene_p.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 27%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictableview.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/pluginlayermanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/pluginlayermanager.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/pluginlayermanager.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/pluginlayermanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pluginlayermanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/scriptloader.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/scriptloader.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/scriptloader.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/scriptloader.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scriptloader.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/toolplugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/toolplugin.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/toolplugin.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/toolplugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 28%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/utilities.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/utilities.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/utilities.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/utilities.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/qrc_qtgui.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Building CXX object avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/viewfactory.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/g++ -DAvogadroLibs_DATA_DIR=\"share\" -DAvogadroLibs_LIB_DIR=\"lib64\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/AvogadroQtGui_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/viewfactory.cpp.o -MF CMakeFiles/AvogadroQtGui.dir/viewfactory.cpp.o.d -o CMakeFiles/AvogadroQtGui.dir/viewfactory.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/viewfactory.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Linking CXX shared library ../../lib/libAvogadroQtGui.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroQtGui.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroQtGui.so.1 -o ../../lib/libAvogadroQtGui.so.1.97.0 CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o CMakeFiles/AvogadroQtGui.dir/colorbutton.cpp.o CMakeFiles/AvogadroQtGui.dir/containerwidget.cpp.o CMakeFiles/AvogadroQtGui.dir/customelementdialog.cpp.o CMakeFiles/AvogadroQtGui.dir/elementdetail_p.cpp.o CMakeFiles/AvogadroQtGui.dir/elementitem_p.cpp.o CMakeFiles/AvogadroQtGui.dir/elementtranslator.cpp.o CMakeFiles/AvogadroQtGui.dir/extensionplugin.cpp.o CMakeFiles/AvogadroQtGui.dir/filebrowsewidget.cpp.o CMakeFiles/AvogadroQtGui.dir/fileformatdialog.cpp.o CMakeFiles/AvogadroQtGui.dir/generichighlighter.cpp.o CMakeFiles/AvogadroQtGui.dir/hydrogentools.cpp.o CMakeFiles/AvogadroQtGui.dir/interfacescript.cpp.o CMakeFiles/AvogadroQtGui.dir/interfacewidget.cpp.o CMakeFiles/AvogadroQtGui.dir/jsonwidget.cpp.o CMakeFiles/AvogadroQtGui.dir/layermodel.cpp.o CMakeFiles/AvogadroQtGui.dir/rwlayermanager.cpp.o CMakeFiles/AvogadroQtGui.dir/meshgenerator.cpp.o CMakeFiles/AvogadroQtGui.dir/molecule.cpp.o CMakeFiles/AvogadroQtGui.dir/moleculemodel.cpp.o CMakeFiles/AvogadroQtGui.dir/multiviewwidget.cpp.o CMakeFiles/AvogadroQtGui.dir/periodictablescene_p.cpp.o CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o CMakeFiles/AvogadroQtGui.dir/pluginlayermanager.cpp.o CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o CMakeFiles/AvogadroQtGui.dir/scriptloader.cpp.o CMakeFiles/AvogadroQtGui.dir/toolplugin.cpp.o CMakeFiles/AvogadroQtGui.dir/utilities.cpp.o CMakeFiles/AvogadroQtGui.dir/viewfactory.cpp.o CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib: ../../lib/libAvogadroIO.so.1.97.0 /usr/lib64/libQt5Widgets.so.5.15.10 ../../lib/libAvogadroCore.so.1.97.0 /usr/lib64/libQt5Gui.so.5.15.10 /usr/lib64/libQt5Core.so.5.15.10 cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQtGui.so.1.97.0 ../../lib/libAvogadroQtGui.so.1 ../../lib/libAvogadroQtGui.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Built target AvogadroQtGui make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/depend /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/build /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Automatic MOC for target AvogadroQtOpenGL cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtopengl/activeobjects.h" AutoGen: Parsing "SRC:/avogadro/qtopengl/glwidget.h" AutoGen: Parsing "SRC:/avogadro/qtopengl/qttextrenderstrategy.h" AutoGen: Parsing "SRC:/avogadro/qtopengl/activeobjects.cpp" AutoGen: Parsing "SRC:/avogadro/qtopengl/glwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtopengl/qttextrenderstrategy.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_activeobjects.cpp", because it doesn't exist, from "SRC:/avogadro/qtopengl/activeobjects.h" /usr/lib64/qt5/bin/moc -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_activeobjects.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/activeobjects.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_activeobjects.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtopengl/glwidget.h" /usr/lib64/qt5/bin/moc -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Built target AvogadroQtOpenGL_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 30%] Automatic MOC for target QTAIMScenePlugin cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimengine.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimengine.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/EWIEGA46WW/moc_qtaimengine.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/qtaim/qtaimengine.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/EWIEGA46WW/moc_qtaimengine.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimengine.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/EWIEGA46WW/moc_qtaimengine.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include/QTAIMScenePluginPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include/QTAIMScenePluginPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include/QTAIMScenePluginPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 30%] Built target QTAIMScenePlugin_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Automatic MOC for target AvogadroMoleQueue cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/molequeue/batchjob.h" AutoGen: Parsing "SRC:/avogadro/molequeue/client/client.h" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jobobject.h" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jsonrpcclient.h" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgenerator.h" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratordialog.h" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratorwidget.h" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuedialog.h" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuemanager.h" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuequeuelistmodel.h" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuewidget.h" AutoGen: Parsing "SRC:/avogadro/molequeue/batchjob.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/client/client.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jobobject.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/client/jsonrpcclient.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgenerator.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratordialog.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/inputgeneratorwidget.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuedialog.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuemanager.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuequeuelistmodel.cpp" AutoGen: Parsing "SRC:/avogadro/molequeue/molequeuewidget.cpp" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/batchjob.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/batchjob.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_batchjob.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/7EM65HM6UG/moc_client.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/client/client.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/7EM65HM6UG/moc_client.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/7EM65HM6UG/moc_client.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/7EM65HM6UG/moc_jsonrpcclient.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/client/jsonrpcclient.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/7EM65HM6UG/moc_jsonrpcclient.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jsonrpcclient.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/7EM65HM6UG/moc_jsonrpcclient.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/inputgenerator.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgenerator.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgenerator.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/inputgeneratordialog.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratordialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgeneratordialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/inputgeneratorwidget.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_inputgeneratorwidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuedialog.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuedialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuedialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuemanager.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuemanager.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuemanager.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuequeuelistmodel.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuequeuelistmodel.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp", because it doesn't exist, from "SRC:/avogadro/molequeue/molequeuewidget.h" /usr/lib64/qt5/bin/moc -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuewidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/EWIEGA46WW/moc_molequeuewidget.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/molequeue/AvogadroMoleQueue_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 30%] Built target AvogadroMoleQueue_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 30%] Automatic MOC for target ThreeDMol cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmol.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmoldialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmol.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/3dmol/3dmoldialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/3dmol/3dmol.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol/3dmol.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmol.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/3dmol/3dmoldialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol/3dmoldialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/EWIEGA46WW/moc_3dmoldialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include/ThreeDMolPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include/ThreeDMolPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include/ThreeDMolPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 31%] Built target ThreeDMol_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 31%] Automatic MOC for target ApplyColors cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/applycolors/applycolors.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/applycolors/applycolors.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/EWIEGA46WW/moc_applycolors.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/applycolors/applycolors.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/EWIEGA46WW/moc_applycolors.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/applycolors/applycolors.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/EWIEGA46WW/moc_applycolors.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include/ApplyColorsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include/ApplyColorsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include/ApplyColorsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 31%] Built target ApplyColors_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 31%] Automatic MOC for target Bonding cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/bonding/bonding.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/bonding/bonding.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/bonding/BondingPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/EWIEGA46WW/moc_bonding.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/bonding/bonding.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/EWIEGA46WW/moc_bonding.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bonding/bonding.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/EWIEGA46WW/moc_bonding.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/include/BondingPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/bonding/BondingPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/include/BondingPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/BondingPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/include/BondingPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/bonding/Bonding_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 32%] Built target Bonding_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 32%] Automatic MOC for target Cartoons cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/cartoons/cartoons.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/cartoons/cartoons.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/EWIEGA46WW/moc_cartoons.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/cartoons/cartoons.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/EWIEGA46WW/moc_cartoons.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons/cartoons.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/EWIEGA46WW/moc_cartoons.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include/CartoonsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include/CartoonsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include/CartoonsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/cartoons/Cartoons_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 32%] Built target Cartoons_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 33%] Automatic MOC for target CopyPaste cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/copypaste/copypaste.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/copypaste/copypaste.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/copypaste/copypaste.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/copypaste/copypaste.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/EWIEGA46WW/moc_copypaste.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include/CopyPastePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include/CopyPastePlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include/CopyPastePlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 33%] Built target CopyPaste_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 32%] Automatic MOC for target CoordinateEditor cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditor.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditor.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditor.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditor.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditor.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinateeditordialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/EWIEGA46WW/moc_coordinatetextedit.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include/CoordinateEditorPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 33%] Built target CoordinateEditor_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 33%] Automatic MOC for target Crystal cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystal.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/importcrystaldialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/supercelldialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/unitcelldialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/volumescalingdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystal.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/importcrystaldialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/supercelldialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/unitcelldialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/volumescalingdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/crystal/CrystalPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_crystal.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/crystal.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_crystal.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystal.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_crystal.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/importcrystaldialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/importcrystaldialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_importcrystaldialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/supercelldialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/supercelldialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_supercelldialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/unitcelldialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_unitcelldialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/volumescalingdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/volumescalingdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/EWIEGA46WW/moc_volumescalingdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/include/CrystalPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/crystal/CrystalPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include/CrystalPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/include/CrystalPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/crystal/Crystal_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 34%] Built target Crystal_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 34%] Automatic MOC for target CrystalScene cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystalscene.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/crystal/crystalscene.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/crystal/crystalscene.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystalscene.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/EWIEGA46WW/moc_crystalscene.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include/CrystalScenePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include/CrystalScenePlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include/CrystalScenePlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/crystal/CrystalScene_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target CrystalScene_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Automatic MOC for target CustomElements cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/customelements/customelements.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/customelements/customelements.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/customelements/customelements.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/customelements/customelements.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/EWIEGA46WW/moc_customelements.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/include/CustomElementsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/include/CustomElementsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/include/CustomElementsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/customelements/CustomElements_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target CustomElements_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Automatic MOC for target FetchPDB cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/fetchpdb/fetchpdb.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/fetchpdb/fetchpdb.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/EWIEGA46WW/moc_fetchpdb.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/fetchpdb/fetchpdb.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/EWIEGA46WW/moc_fetchpdb.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/fetchpdb/fetchpdb.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/EWIEGA46WW/moc_fetchpdb.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include/FetchPDBPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include/FetchPDBPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include/FetchPDBPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target FetchPDB_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Automatic MOC for target Editor cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editor.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editortoolwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editor.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/editor/editortoolwidget.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/editor/EditorPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editor.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/editor/editor.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editor.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editor.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editor.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/editor/editortoolwidget.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editortoolwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/EWIEGA46WW/moc_editortoolwidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/include/EditorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/editor/EditorPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/include/EditorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/EditorPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/include/EditorPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/editor/Editor_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target Editor_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Automatic MOC for target Hydrogens cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/hydrogens/hydrogens.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/hydrogens/hydrogens.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/hydrogens/hydrogens.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/hydrogens/hydrogens.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/EWIEGA46WW/moc_hydrogens.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include/HydrogensPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include/HydrogensPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include/HydrogensPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target Hydrogens_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Automatic MOC for target Focus cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/focus/focus.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/focus/focus.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/focus/FocusPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/focus/focus.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus/focus.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/include/FocusPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/focus/FocusPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/include/FocusPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/FocusPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/include/FocusPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/focus/Focus_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target Focus_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 36%] Automatic MOC for target NucleicInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/insertdna/insertdna.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertdna/insertdna.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/EWIEGA46WW/moc_insertdna.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertdna/insertdna.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/EWIEGA46WW/moc_insertdna.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/EWIEGA46WW/moc_insertdna.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include/NucleicInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include/NucleicInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include/NucleicInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 36%] Built target NucleicInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Automatic MOC for target ImportPQR cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/importpqr.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrrequest.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/importpqr.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrrequest.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/importpqr/pqrwidget.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_importpqr.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/importpqr/importpqr.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_importpqr.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/importpqr.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_importpqr.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrrequest.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/importpqr/pqrrequest.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrrequest.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrrequest.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrrequest.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/importpqr/pqrwidget.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/EWIEGA46WW/moc_pqrwidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include/ImportPQRPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include/ImportPQRPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include/ImportPQRPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 37%] Built target ImportPQR_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 37%] Automatic MOC for target InsertFragment cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragment.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragmentdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragment.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/insertfragmentdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertfragment/insertfragment.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertfragment/insertfragmentdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_sortfiltertreeproxymodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_sortfiltertreeproxymodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_sortfiltertreeproxymodel.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include/InsertFragmentPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include/InsertFragmentPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include/InsertFragmentPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Built target InsertFragment_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Automatic MOC for target Label cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/Label_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/label/label.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/label/label.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/label/LabelPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/Label_autogen/EWIEGA46WW/moc_label.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/label/label.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/EWIEGA46WW/moc_label.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/label/Label_autogen/EWIEGA46WW/moc_label.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/Label_autogen/include/LabelPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/label/LabelPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/include/LabelPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/label/Label_autogen/include/LabelPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/label/Label_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Built target Label_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Automatic MOC for target LabelEditor cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/label/labeleditor.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/label/labeleditor.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/label/LabelEditorPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/EWIEGA46WW/moc_labeleditor.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/label/labeleditor.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/EWIEGA46WW/moc_labeleditor.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/labeleditor.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/EWIEGA46WW/moc_labeleditor.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/include/LabelEditorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/label/LabelEditorPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/include/LabelEditorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditorPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/include/LabelEditorPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/label/LabelEditor_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Built target LabelEditor_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Automatic MOC for target LammpsInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinput.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lammpsinput/lammpsinput.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinput.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include/LammpsInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include/LammpsInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include/LammpsInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Built target LammpsInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Automatic MOC for target LineFormatInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinput.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/lineformatinput/lineformatinputdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lineformatinput/lineformatinput.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinput.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/EWIEGA46WW/moc_lineformatinputdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include/LineFormatInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include/LineFormatInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include/LineFormatInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Built target LineFormatInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Automatic MOC for target MolecularProperties cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularproperties.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularproperties.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/molecularproperties/molecularproperties.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties/molecularproperties.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularproperties.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/EWIEGA46WW/moc_molecularpropertiesdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include/MolecularPropertiesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 39%] Built target MolecularProperties_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target NetworkDatabases cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/networkdatabases/networkdatabases.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/networkdatabases/networkdatabases.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/networkdatabases/networkdatabases.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/networkdatabases/networkdatabases.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/EWIEGA46WW/moc_networkdatabases.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include/NetworkDatabasesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target NetworkDatabases_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 39%] Automatic MOC for target MongoChem cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/calculationsubmitter.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/calculationwatcher.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/configdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/girderrequest.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/listmoleculesmodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/mongochem.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/mongochemwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/submitcalculationdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/calculationsubmitter.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/calculationwatcher.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/configdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/girderrequest.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/listmoleculesmodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/mongochem.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/mongochemwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/mongochem/submitcalculationdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/mongochem/MongoChemPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_calculationsubmitter.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/calculationsubmitter.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_calculationsubmitter.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/calculationsubmitter.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_calculationsubmitter.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_calculationwatcher.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/calculationwatcher.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_calculationwatcher.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/calculationwatcher.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_calculationwatcher.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_configdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/configdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_configdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/configdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_configdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_girderrequest.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/girderrequest.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_girderrequest.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/girderrequest.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_girderrequest.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_listmoleculesmodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/listmoleculesmodel.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_listmoleculesmodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/listmoleculesmodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_listmoleculesmodel.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_mongochem.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/mongochem.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_mongochem.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/mongochem.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_mongochem.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_mongochemwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/mongochemwidget.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_mongochemwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/mongochemwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_mongochemwidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_submitcalculationdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/mongochem/submitcalculationdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_submitcalculationdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/submitcalculationdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/EWIEGA46WW/moc_submitcalculationdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include/MongoChemPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/mongochem/MongoChemPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include/MongoChemPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChemPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include/MongoChemPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/mongochem/MongoChem_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target MongoChem_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target OpenMMInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminput.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openmminput/openmminputdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openmminput/openmminput.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminput.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openmminput/openmminputdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include/OpenMMInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include/OpenMMInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include/OpenMMInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target OpenMMInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target PlayerTool cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/playertool/playertool.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/playertool/playertool.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/EWIEGA46WW/moc_playertool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/playertool/playertool.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/EWIEGA46WW/moc_playertool.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool/playertool.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/EWIEGA46WW/moc_playertool.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include/PlayerToolPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include/PlayerToolPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include/PlayerToolPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/playertool/PlayerTool_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target PlayerTool_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target OpenBabel cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obcharges.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obfileformat.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obforcefielddialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obprocess.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/openbabel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obcharges.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obfileformat.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obforcefielddialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/obprocess.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/openbabel/openbabel.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obforcefielddialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obforcefielddialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obforcefielddialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obprocess.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_obprocess.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/openbabel.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/EWIEGA46WW/moc_openbabel.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obcharges.moc", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obcharges.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obcharges.moc /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obcharges.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obcharges.moc.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obfileformat.moc", because it doesn't exist, from "SRC:/avogadro/qtplugins/openbabel/obfileformat.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obfileformat.moc /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obfileformat.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/obfileformat.moc.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/OpenBabelPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/OpenBabelPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include/OpenBabelPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target OpenBabel_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target POVRay cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/povray/povray.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/povray/povray.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/povray/POVRayPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/EWIEGA46WW/moc_povray.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/povray/povray.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/EWIEGA46WW/moc_povray.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/povray/povray.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/EWIEGA46WW/moc_povray.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/include/POVRayPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/povray/POVRayPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/include/POVRayPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRayPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/include/POVRayPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/povray/POVRay_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target POVRay_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target PropertyTables cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertymodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertytables.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertyview.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertymodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertytables.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/propertytables/propertyview.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertymodel.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/propertytables/propertymodel.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertymodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertymodel.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertytables.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/propertytables/propertytables.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertytables.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertytables.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertytables.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertyview.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/propertytables/propertyview.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertyview.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/EWIEGA46WW/moc_propertyview.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include/PropertyTablesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include/PropertyTablesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include/PropertyTablesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target PropertyTables_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target ResetView cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/resetview/resetview.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/resetview/resetview.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/EWIEGA46WW/moc_resetview.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/resetview/resetview.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/EWIEGA46WW/moc_resetview.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/resetview/resetview.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/EWIEGA46WW/moc_resetview.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/include/ResetViewPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/include/ResetViewPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/include/ResetViewPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/resetview/ResetView_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target ResetView_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target SpaceGroup cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/spacegroup/spacegroup.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/spacegroup/spacegroup.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/spacegroup/spacegroup.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spacegroup/spacegroup.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/EWIEGA46WW/moc_spacegroup.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include/SpaceGroupPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include/SpaceGroupPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include/SpaceGroupPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target SpaceGroup_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target Select cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/select/Select_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/select/select.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/select/select.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/select/SelectPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/select/Select_autogen/EWIEGA46WW/moc_select.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/select/select.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/EWIEGA46WW/moc_select.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/select/Select_autogen/EWIEGA46WW/moc_select.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/select/Select_autogen/include/SelectPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/select/SelectPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/include/SelectPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/SelectPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/select/Select_autogen/include/SelectPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/select/Select_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target Select_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target SVG cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtSvg -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/svg/svg.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/svg/svg.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/svg/SVGPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/EWIEGA46WW/moc_svg.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/svg/svg.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtSvg -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/EWIEGA46WW/moc_svg.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/EWIEGA46WW/moc_svg.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/include/SVGPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/svg/SVGPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtSvg -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/include/SVGPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVGPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/include/SVGPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/svg/SVG_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target SVG_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target Spectra cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/spectra.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/vibrationdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/vibrationmodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/spectra.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/vibrationdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/spectra/vibrationmodel.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/spectra/SpectraPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_spectra.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/spectra/spectra.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_spectra.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/spectra.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_spectra.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_vibrationdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/spectra/vibrationdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_vibrationdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_vibrationdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/include/SpectraPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/spectra/SpectraPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/include/SpectraPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/SpectraPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/include/SpectraPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/spectra/Spectra_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target Spectra_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target VRML cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/vrml/vrml.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/vrml/vrml.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/vrml/VRMLPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/EWIEGA46WW/moc_vrml.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vrml/vrml.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/EWIEGA46WW/moc_vrml.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vrml/vrml.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/EWIEGA46WW/moc_vrml.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/include/VRMLPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/vrml/VRMLPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/include/VRMLPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRMLPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/include/VRMLPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/vrml/VRML_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target VRML_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target commands cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/commandscripts/command.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/commandscripts/command.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/EWIEGA46WW/moc_command.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/commandscripts/command.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/EWIEGA46WW/moc_command.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts/command.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/EWIEGA46WW/moc_command.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/include/commandsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/include/commandsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/include/commandsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/commandscripts/commands_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target commands_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target ScriptFileFormats cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/fileformatscript.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/scriptfileformats.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/fileformatscript.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptfileformats/scriptfileformats.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/scriptfileformats/scriptfileformats.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats/scriptfileformats.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/EWIEGA46WW/moc_scriptfileformats.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include/ScriptFileFormatsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target ScriptFileFormats_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target ScriptCharges cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptchargemodel.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptcharges.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/scriptcharges/scriptcharges.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/EWIEGA46WW/moc_scriptcharges.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/scriptcharges/scriptcharges.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/EWIEGA46WW/moc_scriptcharges.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptcharges.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/EWIEGA46WW/moc_scriptcharges.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include/ScriptChargesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include/ScriptChargesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include/ScriptChargesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 41%] Built target ScriptCharges_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 41%] Automatic MOC for target BallStick cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/ballandstick/ballandstick.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/ballandstick/ballandstick.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/ballandstick/ballandstick.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/ballandstick/ballandstick.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/EWIEGA46WW/moc_ballandstick.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include/BallStickPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include/BallStickPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include/BallStickPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/ballandstick/BallStick_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 41%] Automatic MOC for target PluginDownloader cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/downloaderwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/plugindownloader.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/zipextracter.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/downloaderwidget.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/plugindownloader.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/plugindownloader/zipextracter.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/plugindownloader/downloaderwidget.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader/downloaderwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_downloaderwidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_plugindownloader.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/plugindownloader/plugindownloader.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_plugindownloader.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader/plugindownloader.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/EWIEGA46WW/moc_plugindownloader.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include/PluginDownloaderPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/usr/include/qt5/QtNetwork -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include/PluginDownloaderPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include/PluginDownloaderPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 41%] Built target BallStick_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 41%] Built target PluginDownloader_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 42%] Automatic MOC for target Force cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/force/Force_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/force/force.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/force/force.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/force/ForcePlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/force/Force_autogen/EWIEGA46WW/moc_force.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/force/force.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/EWIEGA46WW/moc_force.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/force/force.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/force/Force_autogen/EWIEGA46WW/moc_force.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/force/Force_autogen/include/ForcePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/force/ForcePlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/include/ForcePlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/ForcePlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/force/Force_autogen/include/ForcePlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/force/Force_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 42%] Built target Force_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Automatic MOC for target Licorice cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/licorice/licorice.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/licorice/licorice.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/EWIEGA46WW/moc_licorice.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/licorice/licorice.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/EWIEGA46WW/moc_licorice.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/licorice/licorice.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/EWIEGA46WW/moc_licorice.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/include/LicoricePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/include/LicoricePlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/include/LicoricePlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/licorice/Licorice_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Built target Licorice_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 41%] Automatic MOC for target CloseContacts cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/closecontacts/closecontacts.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/closecontacts/closecontacts.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/EWIEGA46WW/moc_closecontacts.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/closecontacts/closecontacts.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/EWIEGA46WW/moc_closecontacts.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/closecontacts/closecontacts.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/EWIEGA46WW/moc_closecontacts.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include/CloseContactsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include/CloseContactsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include/CloseContactsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Built target CloseContacts_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Automatic MOC for target Meshes cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/meshes/meshes.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/meshes/meshes.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/EWIEGA46WW/moc_meshes.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/meshes/meshes.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/EWIEGA46WW/moc_meshes.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes/meshes.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/EWIEGA46WW/moc_meshes.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/include/MeshesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/include/MeshesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/include/MeshesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/meshes/Meshes_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Built target Meshes_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Automatic MOC for target VanDerWaals cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/vanderwaals/vanderwaals.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/vanderwaals/vanderwaals.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vanderwaals/vanderwaals.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaals/vanderwaals.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/EWIEGA46WW/moc_vanderwaals.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include/VanDerWaalsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include/VanDerWaalsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include/VanDerWaalsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Built target VanDerWaals_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Automatic MOC for target NonCovalent cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/noncovalent/noncovalent.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/noncovalent/noncovalent.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/EWIEGA46WW/moc_noncovalent.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/noncovalent/noncovalent.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/EWIEGA46WW/moc_noncovalent.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/noncovalent/noncovalent.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/EWIEGA46WW/moc_noncovalent.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include/NonCovalentPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include/NonCovalentPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include/NonCovalentPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Automatic MOC for target VanDerWaalsAO cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/vanderwaalsao/vanderwaalsao.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/vanderwaalsao/vanderwaalsao.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAOPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/EWIEGA46WW/moc_vanderwaalsao.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/vanderwaalsao/vanderwaalsao.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/EWIEGA46WW/moc_vanderwaalsao.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaalsao/vanderwaalsao.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/EWIEGA46WW/moc_vanderwaalsao.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/include/VanDerWaalsAOPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAOPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/include/VanDerWaalsAOPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAOPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/include/VanDerWaalsAOPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Built target NonCovalent_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/depend make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Built target VanDerWaalsAO_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Automatic MOC for target Wireframe cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/wireframe/wireframe.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/wireframe/wireframe.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/wireframe/wireframe.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/wireframe/wireframe.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/EWIEGA46WW/moc_wireframe.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include/WireframePlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include/WireframePlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include/WireframePlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/wireframe/Wireframe_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Built target Wireframe_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Automatic MOC for target QTAIMExtension cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcubature.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimextension.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimmathutilities.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimodeintegrator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunction.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimcubature.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimextension.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimmathutilities.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/EWIEGA46WW/moc_qtaimextension.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/qtaim/qtaimextension.h" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/EWIEGA46WW/moc_qtaimextension.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimextension.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/EWIEGA46WW/moc_qtaimextension.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include/QTAIMExtensionPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include/QTAIMExtensionPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include/QTAIMExtensionPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Built target QTAIMExtension_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 44%] Automatic MOC for target OverlayAxes cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include AutoGen: Parsing "SRC:/avogadro/qtplugins/overlayaxes/overlayaxes.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/overlayaxes/overlayaxes.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/overlayaxes/overlayaxes.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include/OverlayAxesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include/OverlayAxesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include/OverlayAxesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 45%] Built target OverlayAxes_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Generating ui_molequeuewidget.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/ui_molequeuewidget.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuewidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Generating ui_inputgeneratordialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/ui_inputgeneratordialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratordialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Generating ui_inputgeneratorwidget.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/ui_inputgeneratorwidget.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Generating ui_molequeuedialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/ui_molequeuedialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuedialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 45%] Building CXX object avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/AvogadroQtOpenGL_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl && /usr/bin/g++ -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/AvogadroQtOpenGL_autogen/mocs_compilation.cpp.o -MF CMakeFiles/AvogadroQtOpenGL.dir/AvogadroQtOpenGL_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/AvogadroQtOpenGL.dir/AvogadroQtOpenGL_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/mocs_compilation.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/../../../../../avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/EWIEGA46WW/moc_glwidget.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/mocs_compilation.cpp:3: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/AvogadroMoleQueue_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/AvogadroMoleQueue_autogen/mocs_compilation.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/AvogadroMoleQueue_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/AvogadroMoleQueue_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/batchjob.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/batchjob.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/batchjob.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/batchjob.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/batchjob.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/activeobjects.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl && /usr/bin/g++ -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/activeobjects.cpp.o -MF CMakeFiles/AvogadroQtOpenGL.dir/activeobjects.cpp.o.d -o CMakeFiles/AvogadroQtOpenGL.dir/activeobjects.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/activeobjects.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/activeobjects.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/glwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl && /usr/bin/g++ -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/glwidget.cpp.o -MF CMakeFiles/AvogadroQtOpenGL.dir/glwidget.cpp.o.d -o CMakeFiles/AvogadroQtOpenGL.dir/glwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgenerator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgenerator.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/inputgenerator.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/inputgenerator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgenerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgeneratordialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgeneratordialog.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/inputgeneratordialog.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/inputgeneratordialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratordialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/qttextrenderstrategy.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl && /usr/bin/g++ -DAvogadroQtOpenGL_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/AvogadroQtOpenGL_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/qttextrenderstrategy.cpp.o -MF CMakeFiles/AvogadroQtOpenGL.dir/qttextrenderstrategy.cpp.o.d -o CMakeFiles/AvogadroQtOpenGL.dir/qttextrenderstrategy.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/qttextrenderstrategy.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/qttextrenderstrategy.cpp: In function 'Qt::Alignment {anonymous}::textPropertiesToAlignment(const Avogadro::Rendering::TextProperties&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/qttextrenderstrategy.cpp:32:26: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::AlignmentFlag; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 32 | Qt::Alignment result = nullptr; | ^~~~~~~ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtGui/qfont.h:43, from /usr/include/qt5/QtGui/QFont:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/qttextrenderstrategy.cpp:10: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Linking CXX shared library ../../lib/libAvogadroQtOpenGL.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroQtOpenGL.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroQtOpenGL.so.1 -o ../../lib/libAvogadroQtOpenGL.so.1.97.0 CMakeFiles/AvogadroQtOpenGL.dir/AvogadroQtOpenGL_autogen/mocs_compilation.cpp.o CMakeFiles/AvogadroQtOpenGL.dir/activeobjects.cpp.o CMakeFiles/AvogadroQtOpenGL.dir/glwidget.cpp.o CMakeFiles/AvogadroQtOpenGL.dir/qttextrenderstrategy.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib: ../../lib/libAvogadroRendering.so.1.97.0 ../../lib/libAvogadroQtGui.so.1.97.0 /usr/lib64/libQt5Widgets.so.5.15.10 /usr/lib64/libGLEW.so /usr/lib64/libGL.so /usr/lib64/libGLU.so ../../lib/libAvogadroIO.so.1.97.0 ../../lib/libAvogadroCore.so.1.97.0 /usr/lib64/libQt5Widgets.so.5.15.10 /usr/lib64/libQt5Gui.so.5.15.10 /usr/lib64/libQt5Core.so.5.15.10 /usr/lib64/libQt5Gui.so.5.15.10 /usr/lib64/libQt5Core.so.5.15.10 cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQtOpenGL.so.1.97.0 ../../lib/libAvogadroQtOpenGL.so.1 ../../lib/libAvogadroQtOpenGL.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Built target AvogadroQtOpenGL make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgeneratorwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/inputgeneratorwidget.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/inputgeneratorwidget.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/inputgeneratorwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.cpp: In member function 'void Avogadro::MoleQueue::InputGeneratorWidget::showError(const QString&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.cpp:398:32: warning: 'int QFontMetrics::width(const QString&, int) const' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 398 | int charWidth = metrics.width("i7OPlmWn9/") / 10; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtWidgets/qwidget.h:50, from /usr/include/qt5/QtWidgets/QWidget:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.cpp:6: /usr/include/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o -MF CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o.d -o CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimengine.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimengine.cpp:12: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuedialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuedialog.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/molequeuedialog.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/molequeuedialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuedialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePlugin_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o -MF CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o.d -o CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMScenePluginPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Linking CXX static library ../../../lib/avogadro2/staticplugins/QTAIMScenePlugin.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -P CMakeFiles/QTAIMScenePlugin.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_link_script CMakeFiles/QTAIMScenePlugin.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/QTAIMScenePlugin.a CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePlugin_autogen/mocs_compilation.cpp.o CMakeFiles/QTAIMScenePlugin.dir/qtaimengine.cpp.o CMakeFiles/QTAIMScenePlugin.dir/QTAIMScenePluginPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/QTAIMScenePlugin.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Built target QTAIMScenePlugin make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Generating ui_3dmoldialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ui_3dmoldialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol/3dmoldialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuemanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuemanager.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/molequeuemanager.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/molequeuemanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuequeuelistmodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuequeuelistmodel.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/molequeuequeuelistmodel.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/molequeuequeuelistmodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmol.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmol.cpp.o -MF CMakeFiles/ThreeDMol.dir/3dmol.cpp.o.d -o CMakeFiles/ThreeDMol.dir/3dmol.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol/3dmol.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuewidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/molequeuewidget.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/molequeuewidget.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/molequeuewidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuewidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o -MF CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o.d -o CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol/3dmoldialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/client/client.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/client/client.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/client/client.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/client/client.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMol_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o -MF CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o.d -o CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/ThreeDMolPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ThreeDMol.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -P CMakeFiles/ThreeDMol.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -E cmake_link_script CMakeFiles/ThreeDMol.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ThreeDMol.a CMakeFiles/ThreeDMol.dir/ThreeDMol_autogen/mocs_compilation.cpp.o CMakeFiles/ThreeDMol.dir/3dmol.cpp.o CMakeFiles/ThreeDMol.dir/3dmoldialog.cpp.o CMakeFiles/ThreeDMol.dir/ThreeDMolPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ThreeDMol.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Built target ThreeDMol make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Generating ui_chargedialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ui_chargedialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/applycolors/chargedialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/client/jobobject.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/client/jobobject.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/client/jobobject.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/client/jobobject.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jobobject.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Building CXX object avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Building CXX object avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/client/jsonrpcclient.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/g++ -DAvogadroMoleQueue_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/AvogadroMoleQueue_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/client/jsonrpcclient.cpp.o -MF CMakeFiles/AvogadroMoleQueue.dir/client/jsonrpcclient.cpp.o.d -o CMakeFiles/AvogadroMoleQueue.dir/client/jsonrpcclient.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jsonrpcclient.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Building CXX object avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/applycolors.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/applycolors.cpp.o -MF CMakeFiles/ApplyColors.dir/applycolors.cpp.o.d -o CMakeFiles/ApplyColors.dir/applycolors.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/applycolors/applycolors.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Linking CXX shared library ../../lib/libAvogadroMoleQueue.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroMoleQueue.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroMoleQueue.so.1 -o ../../lib/libAvogadroMoleQueue.so.1.97.0 CMakeFiles/AvogadroMoleQueue.dir/AvogadroMoleQueue_autogen/mocs_compilation.cpp.o CMakeFiles/AvogadroMoleQueue.dir/batchjob.cpp.o CMakeFiles/AvogadroMoleQueue.dir/inputgenerator.cpp.o CMakeFiles/AvogadroMoleQueue.dir/inputgeneratordialog.cpp.o CMakeFiles/AvogadroMoleQueue.dir/inputgeneratorwidget.cpp.o CMakeFiles/AvogadroMoleQueue.dir/molequeuedialog.cpp.o CMakeFiles/AvogadroMoleQueue.dir/molequeuemanager.cpp.o CMakeFiles/AvogadroMoleQueue.dir/molequeuequeuelistmodel.cpp.o CMakeFiles/AvogadroMoleQueue.dir/molequeuewidget.cpp.o CMakeFiles/AvogadroMoleQueue.dir/client/client.cpp.o CMakeFiles/AvogadroMoleQueue.dir/client/jobobject.cpp.o CMakeFiles/AvogadroMoleQueue.dir/client/jsonrpcclient.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib: ../../lib/libAvogadroQtGui.so.1.97.0 /usr/lib64/libQt5Widgets.so.5.15.10 /usr/lib64/libQt5Network.so.5.15.10 ../../lib/libAvogadroIO.so.1.97.0 ../../lib/libAvogadroCore.so.1.97.0 /usr/lib64/libQt5Widgets.so.5.15.10 /usr/lib64/libQt5Gui.so.5.15.10 /usr/lib64/libQt5Core.so.5.15.10 /usr/lib64/libQt5Gui.so.5.15.10 /usr/lib64/libQt5Core.so.5.15.10 cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroMoleQueue.so.1.97.0 ../../lib/libAvogadroMoleQueue.so.1 ../../lib/libAvogadroMoleQueue.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Built target AvogadroMoleQueue make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Building CXX object avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColors_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o -MF CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o.d -o CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/ApplyColorsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ApplyColors.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/bin/cmake -P CMakeFiles/ApplyColors.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/bin/cmake -E cmake_link_script CMakeFiles/ApplyColors.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ApplyColors.a CMakeFiles/ApplyColors.dir/ApplyColors_autogen/mocs_compilation.cpp.o CMakeFiles/ApplyColors.dir/applycolors.cpp.o CMakeFiles/ApplyColors.dir/ApplyColorsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ApplyColors.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Built target ApplyColors make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Generating ui_bondingdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/ui_bondingdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bonding/bondingdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Automatic MOC for target BondCentric cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/bondcentrictool/bondcentrictool.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/EWIEGA46WW/moc_bondcentrictool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/bondcentrictool/bondcentrictool.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/EWIEGA46WW/moc_bondcentrictool.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/EWIEGA46WW/moc_bondcentrictool.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include/BondCentricPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include/BondCentricPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include/BondCentricPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Built target BondCentric_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Building CXX object avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/bonding.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/bonding.cpp.o -MF CMakeFiles/Bonding.dir/bonding.cpp.o.d -o CMakeFiles/Bonding.dir/bonding.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bonding/bonding.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Building CXX object avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/BondingPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/Bonding_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/BondingPlugin.cpp.o -MF CMakeFiles/Bonding.dir/BondingPlugin.cpp.o.d -o CMakeFiles/Bonding.dir/BondingPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/BondingPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 51%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Bonding.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/bin/cmake -P CMakeFiles/Bonding.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/bin/cmake -E cmake_link_script CMakeFiles/Bonding.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Bonding.a CMakeFiles/Bonding.dir/Bonding_autogen/mocs_compilation.cpp.o CMakeFiles/Bonding.dir/bonding.cpp.o CMakeFiles/Bonding.dir/BondingPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Bonding.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 51%] Built target Bonding make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Generating ui_coordinateeditordialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/ui_coordinateeditordialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f 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-I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Building CXX object avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/cartoons.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/cartoons.cpp.o -MF CMakeFiles/Cartoons.dir/cartoons.cpp.o.d -o CMakeFiles/Cartoons.dir/cartoons.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons/cartoons.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/beziergeometry.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons/cartoons.cpp:15: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'bool Avogadro::Rendering::Line::flat' [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56:8: warning: 'Avogadro::Rendering::Line::flat' will be initialized after [-Wreorder] 56 | bool flat; // use GL_POINTS | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:40:3: warning: when initialized here [-Wreorder] 40 | Line() : radius(0.0f), flat(true), dirty(true) {} | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h: In constructor 'Avogadro::Rendering::Line::Line(float)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57:9: warning: 'Avogadro::Rendering::Line::radius' will be initialized after [-Wreorder] 57 | float radius; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55:8: warning: 'bool Avogadro::Rendering::Line::dirty' [-Wreorder] 55 | bool dirty; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41:3: warning: when initialized here [-Wreorder] 41 | Line(float r) : radius(r), dirty(true) { flat = r < 0.0f; } | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons/cartoons.cpp: In member function 'void Avogadro::QtPlugins::LayerCartoon::setupWidget(Avogadro::QtPlugins::Cartoons*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons/cartoons.cpp:111:28: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 111 | for (size_t i = 0; i < boxesText.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o -MF CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Building CXX object avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/Cartoons_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o -MF CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o.d -o CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CartoonsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Cartoons.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons && /usr/bin/cmake -P CMakeFiles/Cartoons.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons && /usr/bin/cmake -E cmake_link_script CMakeFiles/Cartoons.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Cartoons.a CMakeFiles/Cartoons.dir/Cartoons_autogen/mocs_compilation.cpp.o CMakeFiles/Cartoons.dir/cartoons.cpp.o CMakeFiles/Cartoons.dir/CartoonsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Cartoons.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Built target Cartoons make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Building CXX object avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o -MF CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp: In member function 'QString Avogadro::QtPlugins::CoordinateEditorDialog::detectInputFormat() const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:641:64: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 641 | QList tokens(sample.split(TOKEN_SEPARATOR, QString::SkipEmptyParts)); | ^~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/qobject.h:47, from /usr/include/qt5/QtWidgets/qwidget.h:45, from /usr/include/qt5/QtWidgets/qdialog.h:44, from /usr/include/qt5/QtWidgets/QDialog:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:6: /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:641:64: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 641 | QList tokens(sample.split(TOKEN_SEPARATOR, QString::SkipEmptyParts)); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:641:37: warning: 'QStringList QString::split(const QRegExp&, SplitBehavior) const' is deprecated: Use split(const QRegularExpression &, Qt::SplitBehavior) variant instead [-Wdeprecated-declarations] 641 | QList tokens(sample.split(TOKEN_SEPARATOR, QString::SkipEmptyParts)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:622:17: note: declared here 622 | QStringList split(const QRegExp &sep, SplitBehavior behavior) const; | ^~~~~ In member function '__ct ', inlined from 'QVector<(anonymous namespace)::AtomStruct>::append((anonymous namespace)::AtomStruct const&)' at /usr/include/qt5/QtCore/qvector.h:793:13, inlined from 'QVector<(anonymous namespace)::AtomStruct>::operator<<((anonymous namespace)::AtomStruct const&)' at /usr/include/qt5/QtCore/qvector.h:293:13, inlined from 'Avogadro::QtPlugins::CoordinateEditorDialog::validateInputWorker()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:476:28: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:93:8: warning: 'atom.atomicNumber' may be used uninitialized [-Wmaybe-uninitialized] 93 | struct AtomStruct | ^~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp: In member function 'Avogadro::QtPlugins::CoordinateEditorDialog::validateInputWorker()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinateeditordialog.cpp:341:16: note: 'atom.atomicNumber' was declared here 341 | AtomStruct atom; | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Building CXX object avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/copypaste.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/copypaste.cpp.o -MF CMakeFiles/CopyPaste.dir/copypaste.cpp.o.d -o CMakeFiles/CopyPaste.dir/copypaste.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/copypaste/copypaste.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o -MF CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp: In constructor 'Avogadro::QtPlugins::CoordinateTextEdit::CoordinateTextEdit(QWidget*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp:23:60: warning: 'const QBrush& QPalette::foreground() const' is deprecated: Use QPalette::windowText() instead [-Wdeprecated-declarations] 23 | m_unmarkedFormat.setForeground(qApp->palette().foreground().color()); | ^ In file included from /usr/include/qt5/QtWidgets/qwidget.h:48, from /usr/include/qt5/QtWidgets/qframe.h:44, from /usr/include/qt5/QtWidgets/qabstractscrollarea.h:44, from /usr/include/qt5/QtWidgets/qtextedit.h:44, from /usr/include/qt5/QtWidgets/QTextEdit:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor/coordinatetextedit.cpp:6: /usr/include/qt5/QtGui/qpalette.h:147:26: note: declared here 147 | inline const QBrush &foreground() const { return windowText(); } | ^~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Building CXX object avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPaste_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o -MF CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o.d -o CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CopyPastePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Building CXX object avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o -MF CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o.d -o CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CoordinateEditorPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CopyPaste.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -P CMakeFiles/CopyPaste.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -E cmake_link_script CMakeFiles/CopyPaste.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CopyPaste.a CMakeFiles/CopyPaste.dir/CopyPaste_autogen/mocs_compilation.cpp.o CMakeFiles/CopyPaste.dir/copypaste.cpp.o CMakeFiles/CopyPaste.dir/CopyPastePlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CopyPaste.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 53%] Built target CopyPaste make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 53%] Generating ui_volumescalingdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/ui_volumescalingdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/volumescalingdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 53%] Generating ui_importcrystaldialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/ui_importcrystaldialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/importcrystaldialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 53%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CoordinateEditor.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -P CMakeFiles/CoordinateEditor.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E cmake_link_script CMakeFiles/CoordinateEditor.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CoordinateEditor.a CMakeFiles/CoordinateEditor.dir/CoordinateEditor_autogen/mocs_compilation.cpp.o CMakeFiles/CoordinateEditor.dir/coordinateeditor.cpp.o CMakeFiles/CoordinateEditor.dir/coordinateeditordialog.cpp.o CMakeFiles/CoordinateEditor.dir/coordinatetextedit.cpp.o CMakeFiles/CoordinateEditor.dir/CoordinateEditorPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CoordinateEditor.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 53%] Generating ui_supercelldialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/ui_supercelldialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/supercelldialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 53%] Built target CoordinateEditor make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 53%] Generating ui_unitcelldialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/ui_unitcelldialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 53%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/crystalscene.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/crystalscene.cpp.o -MF CMakeFiles/CrystalScene.dir/crystalscene.cpp.o.d -o CMakeFiles/CrystalScene.dir/crystalscene.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystalscene.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystalscene.cpp:13: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In file included from /usr/include/c++/13/vector:66, from /usr/include/c++/13/functional:64, from /usr/include/eigen3/Eigen/Core:85, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystalscene.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystalscene.cpp:6: In member function 'std::vector, std::allocator > >::resize(unsigned long, Eigen::Matrix const&)', inlined from 'Avogadro::Core::Array >::resize(unsigned long const&, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:177:19, inlined from 'Avogadro::QtPlugins::CrystalScene::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystalscene.cpp:79:17: /usr/include/c++/13/bits/stl_vector.h:1034:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1034 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72: /usr/include/c++/13/bits/vector.tcc: In member function 'Avogadro::QtPlugins::CrystalScene::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)': /usr/include/c++/13/bits/vector.tcc:529:5: note: by argument 4 of type 'const struct value_type &' to 'std::vector, std::allocator > >::_M_fill_insert(__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, unsigned long, Eigen::Matrix const&)' declared here 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystalscene.cpp:79:17: note: '' declared here 79 | strip.resize(2); | ~~~~~~~~~~~~^~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/crystal.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/crystal.cpp.o -MF CMakeFiles/Crystal.dir/crystal.cpp.o.d -o CMakeFiles/Crystal.dir/crystal.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/crystal.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScene_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o -MF CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o.d -o CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalScenePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CrystalScene.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -P CMakeFiles/CrystalScene.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_link_script CMakeFiles/CrystalScene.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CrystalScene.a CMakeFiles/CrystalScene.dir/CrystalScene_autogen/mocs_compilation.cpp.o CMakeFiles/CrystalScene.dir/crystalscene.cpp.o CMakeFiles/CrystalScene.dir/CrystalScenePlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CrystalScene.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Built target CrystalScene make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o -MF CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o.d -o CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/importcrystaldialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/customelements.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/customelements.cpp.o -MF CMakeFiles/CustomElements.dir/customelements.cpp.o.d -o CMakeFiles/CustomElements.dir/customelements.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/customelements/customelements.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElements_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o -MF CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o.d -o CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CustomElementsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CustomElements.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements && /usr/bin/cmake -P CMakeFiles/CustomElements.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements && /usr/bin/cmake -E cmake_link_script CMakeFiles/CustomElements.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CustomElements.a CMakeFiles/CustomElements.dir/CustomElements_autogen/mocs_compilation.cpp.o CMakeFiles/CustomElements.dir/customelements.cpp.o CMakeFiles/CustomElements.dir/CustomElementsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CustomElements.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Built target CustomElements make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Generating ui_editortoolwidget.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/ui_editortoolwidget.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editortoolwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Generating qrc_editor.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/lib64/qt5/bin/rcc --name editor --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/qrc_editor.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editor.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/supercelldialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/supercelldialog.cpp.o -MF CMakeFiles/Crystal.dir/supercelldialog.cpp.o.d -o CMakeFiles/Crystal.dir/supercelldialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/supercelldialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/unitcelldialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/unitcelldialog.cpp.o -MF CMakeFiles/Crystal.dir/unitcelldialog.cpp.o.d -o CMakeFiles/Crystal.dir/unitcelldialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.cpp: In static member function 'static void Avogadro::QtPlugins::UnitCellDialog::initializeMatrixEditor(QPlainTextEdit*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.cpp:308:35: warning: 'int QFontMetrics::width(QChar) const' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 308 | int minWidth = 3 * metrics.width('0') * (MATRIX_WIDTH + 1); | ~~~~~~~~~~~~~^~~~~ In file included from /usr/include/qt5/QtWidgets/qwidget.h:50, from /usr/include/qt5/QtWidgets/qdialog.h:44, from /usr/include/qt5/QtWidgets/QDialog:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.cpp:6: /usr/include/qt5/QtGui/qfontmetrics.h:110:9: note: declared here 110 | int width(QChar) const; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.cpp: In static member function 'static Avogadro::Matrix3 Avogadro::QtPlugins::UnitCellDialog::stringToMatrix(const QString&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.cpp:350:58: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 350 | QStringList values = line.split(MATRIX_SEP, QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/qobject.h:47, from /usr/include/qt5/QtWidgets/qwidget.h:45: /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.cpp:350:58: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 350 | QStringList values = line.split(MATRIX_SEP, QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/unitcelldialog.cpp:350:36: warning: 'QStringList QString::split(const QRegExp&, SplitBehavior) const' is deprecated: Use split(const QRegularExpression &, Qt::SplitBehavior) variant instead [-Wdeprecated-declarations] 350 | QStringList values = line.split(MATRIX_SEP, QString::SkipEmptyParts); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:622:17: note: declared here 622 | QStringList split(const QRegExp &sep, SplitBehavior behavior) const; | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o -MF CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o.d -o CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal/volumescalingdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 55%] Building CXX object avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/Crystal_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o -MF CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o.d -o CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CrystalPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 55%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Crystal.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -P CMakeFiles/Crystal.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_link_script CMakeFiles/Crystal.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Crystal.a CMakeFiles/Crystal.dir/Crystal_autogen/mocs_compilation.cpp.o CMakeFiles/Crystal.dir/crystal.cpp.o CMakeFiles/Crystal.dir/importcrystaldialog.cpp.o CMakeFiles/Crystal.dir/supercelldialog.cpp.o CMakeFiles/Crystal.dir/unitcelldialog.cpp.o CMakeFiles/Crystal.dir/volumescalingdialog.cpp.o CMakeFiles/Crystal.dir/CrystalPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Crystal.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 55%] Built target Crystal make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editor.cpp.o -MF CMakeFiles/Editor.dir/editor.cpp.o.d -o CMakeFiles/Editor.dir/editor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editor.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editor.cpp:19: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 55%] Building CXX object avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o -MF CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 55%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editortoolwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/editortoolwidget.cpp.o -MF CMakeFiles/Editor.dir/editortoolwidget.cpp.o.d -o CMakeFiles/Editor.dir/editortoolwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editortoolwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editortoolwidget.cpp: In member function 'void Avogadro::QtPlugins::EditorToolWidget::updateElementCombo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editortoolwidget.cpp:111:8: warning: 'void qSort(Container&) [with Container = QList]' is deprecated: Use std::sort [-Wdeprecated-declarations] 111 | qSort(allElements); | ~~~~~^~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/qlist.h:43, from /usr/include/qt5/QtCore/qobject.h:49, from /usr/include/qt5/QtWidgets/qwidget.h:45, from /usr/include/qt5/QtWidgets/QWidget:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editortoolwidget.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor/editortoolwidget.cpp:6: /usr/include/qt5/QtCore/qalgorithms.h:188:46: note: declared here 188 | QT_DEPRECATED_X("Use std::sort") inline void qSort(Container &c) | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 56%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/qrc_editor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/qrc_editor.cpp.o -MF CMakeFiles/Editor.dir/qrc_editor.cpp.o.d -o CMakeFiles/Editor.dir/qrc_editor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/qrc_editor.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 55%] Building CXX object avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o -MF CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o.d -o CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/fetchpdb/fetchpdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 56%] Building CXX object avogadro/qtplugins/editor/CMakeFiles/Editor.dir/EditorPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/Editor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/editor/CMakeFiles/Editor.dir/EditorPlugin.cpp.o -MF CMakeFiles/Editor.dir/EditorPlugin.cpp.o.d -o CMakeFiles/Editor.dir/EditorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/EditorPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Editor.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/cmake -P CMakeFiles/Editor.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Editor.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Editor.a CMakeFiles/Editor.dir/Editor_autogen/mocs_compilation.cpp.o CMakeFiles/Editor.dir/editor.cpp.o CMakeFiles/Editor.dir/editortoolwidget.cpp.o CMakeFiles/Editor.dir/qrc_editor.cpp.o CMakeFiles/Editor.dir/EditorPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Editor.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Built target Editor make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/CMakeFiles/Focus.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Building CXX object avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDB_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o -MF CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o.d -o CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/FetchPDBPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Linking CXX static library ../../../lib/avogadro2/staticplugins/FetchPDB.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -P CMakeFiles/FetchPDB.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -E cmake_link_script CMakeFiles/FetchPDB.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/FetchPDB.a CMakeFiles/FetchPDB.dir/FetchPDB_autogen/mocs_compilation.cpp.o CMakeFiles/FetchPDB.dir/fetchpdb.cpp.o CMakeFiles/FetchPDB.dir/FetchPDBPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/FetchPDB.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Built target FetchPDB make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Building CXX object avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Building CXX object avogadro/qtplugins/focus/CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/focus/CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/mocs_compilation.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/focus/focus.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/EWIEGA46WW/moc_focus.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/mocs_compilation.cpp:2: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Building CXX object avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/hydrogens.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/hydrogens.cpp.o -MF CMakeFiles/Hydrogens.dir/hydrogens.cpp.o.d -o CMakeFiles/Hydrogens.dir/hydrogens.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/hydrogens/hydrogens.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Building CXX object avogadro/qtplugins/focus/CMakeFiles/Focus.dir/focus.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/focus/CMakeFiles/Focus.dir/focus.cpp.o -MF CMakeFiles/Focus.dir/focus.cpp.o.d -o CMakeFiles/Focus.dir/focus.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus/focus.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus/focus.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus/focus.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Building CXX object avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/Hydrogens_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o -MF CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o.d -o CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/HydrogensPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 58%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Hydrogens.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -P CMakeFiles/Hydrogens.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E cmake_link_script CMakeFiles/Hydrogens.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Hydrogens.a CMakeFiles/Hydrogens.dir/Hydrogens_autogen/mocs_compilation.cpp.o CMakeFiles/Hydrogens.dir/hydrogens.cpp.o CMakeFiles/Hydrogens.dir/HydrogensPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Hydrogens.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 58%] Built target Hydrogens make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 58%] Generating ui_pqrwidget.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ui_pqrwidget.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Building CXX object avogadro/qtplugins/focus/CMakeFiles/Focus.dir/FocusPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/Focus_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/focus/CMakeFiles/Focus.dir/FocusPlugin.cpp.o -MF CMakeFiles/Focus.dir/FocusPlugin.cpp.o.d -o CMakeFiles/Focus.dir/FocusPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/FocusPlugin.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus/focus.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/FocusPlugin.cpp:8: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 59%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Focus.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus && /usr/bin/cmake -P CMakeFiles/Focus.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus && /usr/bin/cmake -E cmake_link_script CMakeFiles/Focus.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Focus.a CMakeFiles/Focus.dir/Focus_autogen/mocs_compilation.cpp.o CMakeFiles/Focus.dir/focus.cpp.o CMakeFiles/Focus.dir/FocusPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Focus.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 59%] Built target Focus make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 59%] Generating ui_insertdnadialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/ui_insertdnadialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdnadialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 58%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 59%] Building CXX object avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 59%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/importpqr.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/importpqr.cpp.o -MF CMakeFiles/ImportPQR.dir/importpqr.cpp.o.d -o CMakeFiles/ImportPQR.dir/importpqr.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/importpqr.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 60%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o -MF CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o.d -o CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 59%] Building CXX object avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/insertdna.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/insertdna.cpp.o -MF CMakeFiles/NucleicInput.dir/insertdna.cpp.o.d -o CMakeFiles/NucleicInput.dir/insertdna.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.h: In constructor 'Avogadro::QtPlugins::InsertDna::InsertDna(QObject*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.h:55:19: warning: 'Avogadro::QtPlugins::InsertDna::m_reader' will be initialized after [-Wreorder] 55 | Io::FileFormat* m_reader; | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.h:54:20: warning: 'Avogadro::QtGui::Molecule* Avogadro::QtPlugins::InsertDna::m_molecule' [-Wreorder] 54 | QtGui::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.cpp:39:1: warning: when initialized here [-Wreorder] 39 | InsertDna::InsertDna(QObject* parent_) | ^~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.cpp: In member function 'void Avogadro::QtPlugins::InsertDna::performInsert()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna/insertdna.cpp:208:10: warning: unused variable 'success' [-Wunused-variable] 208 | bool success = m_reader->readString(sequence.toStdString(), newMol); | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 60%] Building CXX object avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o -MF CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o.d -o CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/NucleicInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 60%] Linking CXX static library ../../../lib/avogadro2/staticplugins/NucleicInput.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna && /usr/bin/cmake -P CMakeFiles/NucleicInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna && /usr/bin/cmake -E cmake_link_script CMakeFiles/NucleicInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/NucleicInput.a CMakeFiles/NucleicInput.dir/NucleicInput_autogen/mocs_compilation.cpp.o CMakeFiles/NucleicInput.dir/insertdna.cpp.o CMakeFiles/NucleicInput.dir/NucleicInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/NucleicInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 60%] Built target NucleicInput make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 60%] Generating ui_insertfragmentdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/ui_insertfragmentdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o -MF CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/mocs_compilation.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragmentdialog.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/mocs_compilation.cpp:3: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/insertfragment/insertfragmentdialog.h:28:53: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 28 | Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/insertfragment/insertfragment.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/EWIEGA46WW/moc_insertfragment.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/mocs_compilation.cpp:2: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 60%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o -MF CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o.d -o CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrrequest.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrrequest.cpp: In member function 'QString Avogadro::QtPlugins::PQRRequest::molSelected(int)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrrequest.cpp:77:30: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 77 | if (results.empty() || num > results.size()) | ~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrrequest.cpp: In member function 'float Avogadro::QtPlugins::PQRRequest::getMolMass(QString)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr/pqrrequest.cpp:205:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'long unsigned int'} [-Wsign-compare] 205 | for (int i = 0; i < str.length(); i++) { | ~~^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Building CXX object avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQR_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o -MF CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o.d -o CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/ImportPQRPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ImportPQR.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/cmake -P CMakeFiles/ImportPQR.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/cmake -E cmake_link_script CMakeFiles/ImportPQR.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ImportPQR.a CMakeFiles/ImportPQR.dir/ImportPQR_autogen/mocs_compilation.cpp.o CMakeFiles/ImportPQR.dir/importpqr.cpp.o CMakeFiles/ImportPQR.dir/pqrwidget.cpp.o CMakeFiles/ImportPQR.dir/pqrrequest.cpp.o CMakeFiles/ImportPQR.dir/ImportPQRPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ImportPQR.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Built target ImportPQR make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/Label.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/insertfragment.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/insertfragment.cpp.o -MF CMakeFiles/InsertFragment.dir/insertfragment.cpp.o.d -o CMakeFiles/InsertFragment.dir/insertfragment.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.cpp:7: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.h:28:53: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 28 | Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.cpp:6: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.h: In constructor 'Avogadro::QtPlugins::InsertFragment::InsertFragment(QObject*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.h:50:25: warning: 'Avogadro::QtPlugins::InsertFragment::m_crystalDialog' will be initialized after [-Wreorder] 50 | InsertFragmentDialog* m_crystalDialog; | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.h:49:25: warning: 'Avogadro::QtPlugins::InsertFragmentDialog* Avogadro::QtPlugins::InsertFragment::m_moleculeDialog' [-Wreorder] 49 | InsertFragmentDialog* m_moleculeDialog; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.cpp:28:1: warning: when initialized here [-Wreorder] 28 | InsertFragment::InsertFragment(QObject* parent_) | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.h:55:19: warning: 'Avogadro::QtPlugins::InsertFragment::m_reader' will be initialized after [-Wreorder] 55 | Io::FileFormat* m_reader; | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.h:54:20: warning: 'Avogadro::QtGui::Molecule* Avogadro::QtPlugins::InsertFragment::m_molecule' [-Wreorder] 54 | QtGui::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragment.cpp:28:1: warning: when initialized here [-Wreorder] 28 | InsertFragment::InsertFragment(QObject* parent_) | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.h: In member function 'void Avogadro::QtPlugins::InsertFragment::showDialog()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.h:28:53: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 28 | Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.h:28:53: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 28 | Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Building CXX object avogadro/qtplugins/label/CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/insertfragmentdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/insertfragmentdialog.cpp.o -MF CMakeFiles/InsertFragment.dir/insertfragmentdialog.cpp.o.d -o CMakeFiles/InsertFragment.dir/insertfragmentdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.cpp:17: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.h:28:53: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 28 | Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/qt5/QtWidgets/qdialog.h:43, from /usr/include/qt5/QtWidgets/QDialog:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/insertfragmentdialog.h:9: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/sortfiltertreeproxymodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/sortfiltertreeproxymodel.cpp.o -MF CMakeFiles/InsertFragment.dir/sortfiltertreeproxymodel.cpp.o.d -o CMakeFiles/InsertFragment.dir/sortfiltertreeproxymodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment/sortfiltertreeproxymodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Building CXX object avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragment_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o -MF CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o.d -o CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/InsertFragmentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Linking CXX static library ../../../lib/avogadro2/staticplugins/InsertFragment.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -P CMakeFiles/InsertFragment.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -E cmake_link_script CMakeFiles/InsertFragment.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/InsertFragment.a CMakeFiles/InsertFragment.dir/InsertFragment_autogen/mocs_compilation.cpp.o CMakeFiles/InsertFragment.dir/insertfragment.cpp.o CMakeFiles/InsertFragment.dir/insertfragmentdialog.cpp.o CMakeFiles/InsertFragment.dir/sortfiltertreeproxymodel.cpp.o CMakeFiles/InsertFragment.dir/InsertFragmentPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/InsertFragment.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Built target InsertFragment make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Generating qrc_label.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/lib64/qt5/bin/rcc --name label --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/qrc_label.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Building CXX object avogadro/qtplugins/label/CMakeFiles/Label.dir/label.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/Label.dir/label.cpp.o -MF CMakeFiles/Label.dir/label.cpp.o.d -o CMakeFiles/Label.dir/label.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.cpp:13: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.cpp: In member function 'virtual std::string Avogadro::QtPlugins::LayerLabel::serialize()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.cpp:98:23: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 98 | std::string aux = (const char*)atomOptions; | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.cpp:99:24: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 99 | std::string aux2 = (const char*)residueOptions; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.cpp: In member function 'void Avogadro::QtPlugins::LayerLabel::setupWidget(Avogadro::QtPlugins::Label*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/label.cpp:182:11: warning: variable 'index' set but not used [-Wunused-but-set-variable] 182 | int index = atom->findData(int(atomOptions)); | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o -MF CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/label/CMakeFiles/Label.dir/LabelPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/Label_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/Label.dir/LabelPlugin.cpp.o -MF CMakeFiles/Label.dir/LabelPlugin.cpp.o.d -o CMakeFiles/Label.dir/LabelPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Label.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/cmake -P CMakeFiles/Label.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_link_script CMakeFiles/Label.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Label.a CMakeFiles/Label.dir/Label_autogen/mocs_compilation.cpp.o CMakeFiles/Label.dir/label.cpp.o CMakeFiles/Label.dir/LabelPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Label.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Built target Label make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Generating ui_lammpsinputdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/ui_lammpsinputdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui: Warning: Tab-stop assignment: 'moreButton' is not a valid widget. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.ui: Warning: Tab-stop assignment: 'previewText' is not a valid widget. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/mocs_compilation.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinputdialog.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/mocs_compilation.cpp:3: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/lammpsinput/lammpsinputdialog.h:29:53: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 29 | Qt::WindowFlags flag = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/lammpsinput/lammpsinput.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/EWIEGA46WW/moc_lammpsinput.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/mocs_compilation.cpp:2: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/labeleditor.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/labeleditor.cpp.o -MF CMakeFiles/LabelEditor.dir/labeleditor.cpp.o.d -o CMakeFiles/LabelEditor.dir/labeleditor.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/labeleditor.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label/labeleditor.cpp:8: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/qrc_label.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/qrc_label.cpp.o -MF CMakeFiles/LabelEditor.dir/qrc_label.cpp.o.d -o CMakeFiles/LabelEditor.dir/qrc_label.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/qrc_label.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o -MF CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o.d -o CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h:29:53: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 29 | Qt::WindowFlags flag = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qatomic.h:41, from /usr/include/qt5/QtCore/qvariant.h:43, from /usr/include/qt5/QtCore/QVariant:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/ui_lammpsinputdialog.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h:9: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp: In member function 'QString Avogadro::QtPlugins::LammpsInputDialog::generateInputDeck()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp:628:42: warning: 'QTextStream& QTextStreamFunctions::fixed(QTextStream&)' is deprecated: Use Qt::fixed [-Wdeprecated-declarations] 628 | mol << "velocity all create " << fixed << qSetRealNumberPrecision(2) | ^~~~~ In file included from /usr/include/qt5/QtCore/qdebug.h:49, from /usr/include/qt5/QtCore/QDebug:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp:21: /usr/include/qt5/QtCore/qtextstream.h:288:76: note: declared here 288 | Q_CORE_EXPORT QT_DEPRECATED_VERSION_X(5, 15, "Use Qt::fixed") QTextStream &fixed(QTextStream &s); | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp:635:31: warning: 'QTextStream& QTextStreamFunctions::fixed(QTextStream&)' is deprecated: Use Qt::fixed [-Wdeprecated-declarations] 635 | mol << "timestep " << fixed << qSetRealNumberPrecision(1) << m_timeStep | ^~~~~ /usr/include/qt5/QtCore/qtextstream.h:288:76: note: declared here 288 | Q_CORE_EXPORT QT_DEPRECATED_VERSION_X(5, 15, "Use Qt::fixed") QTextStream &fixed(QTextStream &s); | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp: In member function 'QString Avogadro::QtPlugins::LammpsInputDialog::getEnsemble(ensemble)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp:856:26: warning: 'QTextStream& QTextStreamFunctions::fixed(QTextStream&)' is deprecated: Use Qt::fixed [-Wdeprecated-declarations] 856 | << " temp " << fixed << qSetRealNumberPrecision(2) << m_temperature | ^~~~~ /usr/include/qt5/QtCore/qtextstream.h:288:76: note: declared here 288 | Q_CORE_EXPORT QT_DEPRECATED_VERSION_X(5, 15, "Use Qt::fixed") QTextStream &fixed(QTextStream &s); | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp:857:21: warning: 'QTextStream& QTextStreamFunctions::fixed(QTextStream&)' is deprecated: Use Qt::fixed [-Wdeprecated-declarations] 857 | << " " << fixed << qSetRealNumberPrecision(2) << m_temperature | ^~~~~ /usr/include/qt5/QtCore/qtextstream.h:288:76: note: declared here 288 | Q_CORE_EXPORT QT_DEPRECATED_VERSION_X(5, 15, "Use Qt::fixed") QTextStream &fixed(QTextStream &s); | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp:872:26: warning: 'QTextStream& QTextStreamFunctions::fixed(QTextStream&)' is deprecated: Use Qt::fixed [-Wdeprecated-declarations] 872 | << " temp " << fixed << qSetRealNumberPrecision(2) << m_temperature | ^~~~~ /usr/include/qt5/QtCore/qtextstream.h:288:76: note: declared here 288 | Q_CORE_EXPORT QT_DEPRECATED_VERSION_X(5, 15, "Use Qt::fixed") QTextStream &fixed(QTextStream &s); | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.cpp:873:21: warning: 'QTextStream& QTextStreamFunctions::fixed(QTextStream&)' is deprecated: Use Qt::fixed [-Wdeprecated-declarations] 873 | << " " << fixed << qSetRealNumberPrecision(2) << m_temperature | ^~~~~ /usr/include/qt5/QtCore/qtextstream.h:288:76: note: declared here 288 | Q_CORE_EXPORT QT_DEPRECATED_VERSION_X(5, 15, "Use Qt::fixed") QTextStream &fixed(QTextStream &s); | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditor_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o -MF CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o.d -o CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/LabelEditorPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Linking CXX static library ../../../lib/avogadro2/staticplugins/LabelEditor.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/cmake -P CMakeFiles/LabelEditor.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_link_script CMakeFiles/LabelEditor.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/LabelEditor.a CMakeFiles/LabelEditor.dir/LabelEditor_autogen/mocs_compilation.cpp.o CMakeFiles/LabelEditor.dir/labeleditor.cpp.o CMakeFiles/LabelEditor.dir/qrc_label.cpp.o CMakeFiles/LabelEditor.dir/LabelEditorPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/LabelEditor.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Built target LabelEditor make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Generating ui_lineformatinputdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/ui_lineformatinputdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o -MF CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o.d -o CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinput.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinput.cpp:8: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h:29:53: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 29 | Qt::WindowFlags flag = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinput.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinput.cpp:6: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h: In member function 'void Avogadro::QtPlugins::LammpsInput::menuActivated()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput/lammpsinputdialog.h:29:53: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 29 | Qt::WindowFlags flag = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o -MF CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o.d -o CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/LammpsInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Linking CXX static library ../../../lib/avogadro2/staticplugins/LammpsInput.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -P CMakeFiles/LammpsInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/LammpsInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/LammpsInput.a CMakeFiles/LammpsInput.dir/LammpsInput_autogen/mocs_compilation.cpp.o CMakeFiles/LammpsInput.dir/lammpsinputdialog.cpp.o CMakeFiles/LammpsInput.dir/lammpsinput.cpp.o CMakeFiles/LammpsInput.dir/LammpsInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/LammpsInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Built target LammpsInput make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o -MF CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o.d -o CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.h: In constructor 'Avogadro::QtPlugins::LineFormatInput::LineFormatInput(QObject*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.h:48:19: warning: 'Avogadro::QtPlugins::LineFormatInput::m_reader' will be initialized after [-Wreorder] 48 | Io::FileFormat* m_reader; | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.h:47:20: warning: 'Avogadro::QtGui::Molecule* Avogadro::QtPlugins::LineFormatInput::m_molecule' [-Wreorder] 47 | QtGui::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.cpp:27:1: warning: when initialized here [-Wreorder] 27 | LineFormatInput::LineFormatInput(QObject* parent_) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.cpp: In member function 'void Avogadro::QtPlugins::LineFormatInput::showDialog()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinput.cpp:128:8: warning: unused variable 'success' [-Wunused-variable] 128 | bool success = m_reader->readString(m_descriptor, newMol); | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Automatic MOC for target Manipulator cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/manipulator/manipulator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/manipulator/manipulator.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/EWIEGA46WW/moc_manipulator.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/manipulator/manipulator.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/EWIEGA46WW/moc_manipulator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator/manipulator.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/EWIEGA46WW/moc_manipulator.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include/ManipulatorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include/ManipulatorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include/ManipulatorPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/manipulator/Manipulator_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Built target Manipulator_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Automatic MOC for target MeasureTool cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/measuretool/measuretool.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/measuretool/measuretool.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/EWIEGA46WW/moc_measuretool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/measuretool/measuretool.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/EWIEGA46WW/moc_measuretool.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool/measuretool.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/EWIEGA46WW/moc_measuretool.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include/MeasureToolPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include/MeasureToolPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include/MeasureToolPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Built target MeasureTool_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Generating ui_molecularpropertiesdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/ui_molecularpropertiesdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o -MF CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o.d -o CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput/lineformatinputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o -MF CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Building CXX object avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o -MF CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o.d -o CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/LineFormatInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 64%] Linking CXX static library ../../../lib/avogadro2/staticplugins/LineFormatInput.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -P CMakeFiles/LineFormatInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/LineFormatInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/LineFormatInput.a CMakeFiles/LineFormatInput.dir/LineFormatInput_autogen/mocs_compilation.cpp.o CMakeFiles/LineFormatInput.dir/lineformatinput.cpp.o CMakeFiles/LineFormatInput.dir/lineformatinputdialog.cpp.o CMakeFiles/LineFormatInput.dir/LineFormatInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/LineFormatInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 64%] Built target LineFormatInput make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 65%] Generating ui_submitcalculationdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/ui_submitcalculationdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/submitcalculationdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 65%] Generating ui_configdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/ui_configdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/configdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 65%] Generating ui_mongochemwidget.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/ui_mongochemwidget.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/mongochemwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o -MF CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o.d -o CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties/molecularproperties.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 65%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/MongoChem_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/MongoChem_autogen/mocs_compilation.cpp.o -MF CMakeFiles/MongoChem.dir/MongoChem_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/MongoChem.dir/MongoChem_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o -MF CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o.d -o CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties/molecularpropertiesdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/mongochem.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/mongochem.cpp.o -MF CMakeFiles/MongoChem.dir/mongochem.cpp.o.d -o CMakeFiles/MongoChem.dir/mongochem.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/mongochem.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Building CXX object avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularProperties_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o -MF CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o.d -o CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/MolecularPropertiesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Linking CXX static library ../../../lib/avogadro2/staticplugins/MolecularProperties.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -P CMakeFiles/MolecularProperties.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolecularProperties.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/MolecularProperties.a CMakeFiles/MolecularProperties.dir/MolecularProperties_autogen/mocs_compilation.cpp.o CMakeFiles/MolecularProperties.dir/molecularproperties.cpp.o CMakeFiles/MolecularProperties.dir/molecularpropertiesdialog.cpp.o CMakeFiles/MolecularProperties.dir/MolecularPropertiesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/MolecularProperties.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Built target MolecularProperties make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Automatic MOC for target Navigator cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/navigator/navigator.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/navigator/navigator.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/EWIEGA46WW/moc_navigator.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/navigator/navigator.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/Navigator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/Navigator_autogen/EWIEGA46WW/moc_navigator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator/navigator.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/EWIEGA46WW/moc_navigator.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/include/NavigatorPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/Navigator_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/Navigator_autogen/include/NavigatorPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/include/NavigatorPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/navigator/Navigator_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Built target Navigator_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Building CXX object avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o -MF CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/mongochemwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/mongochemwidget.cpp.o -MF CMakeFiles/MongoChem.dir/mongochemwidget.cpp.o.d -o CMakeFiles/MongoChem.dir/mongochemwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/mongochemwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/girderrequest.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/girderrequest.cpp.o -MF CMakeFiles/MongoChem.dir/girderrequest.cpp.o.d -o CMakeFiles/MongoChem.dir/girderrequest.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/girderrequest.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Building CXX object avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o -MF CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o.d -o CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/networkdatabases/networkdatabases.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/configdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/configdialog.cpp.o -MF CMakeFiles/MongoChem.dir/configdialog.cpp.o.d -o CMakeFiles/MongoChem.dir/configdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/configdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Building CXX object avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabases_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o -MF CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o.d -o CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/NetworkDatabasesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Linking CXX static library ../../../lib/avogadro2/staticplugins/NetworkDatabases.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -P CMakeFiles/NetworkDatabases.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -E cmake_link_script CMakeFiles/NetworkDatabases.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/NetworkDatabases.a CMakeFiles/NetworkDatabases.dir/NetworkDatabases_autogen/mocs_compilation.cpp.o CMakeFiles/NetworkDatabases.dir/networkdatabases.cpp.o CMakeFiles/NetworkDatabases.dir/NetworkDatabasesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/NetworkDatabases.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Built target NetworkDatabases make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Generating ui_obforcefielddialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/ui_obforcefielddialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obforcefielddialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/listmoleculesmodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/listmoleculesmodel.cpp.o -MF CMakeFiles/MongoChem.dir/listmoleculesmodel.cpp.o.d -o CMakeFiles/MongoChem.dir/listmoleculesmodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/listmoleculesmodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o -MF CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/calculationsubmitter.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/calculationsubmitter.cpp.o -MF CMakeFiles/MongoChem.dir/calculationsubmitter.cpp.o.d -o CMakeFiles/MongoChem.dir/calculationsubmitter.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/calculationsubmitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/calculationwatcher.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/calculationwatcher.cpp.o -MF CMakeFiles/MongoChem.dir/calculationwatcher.cpp.o.d -o CMakeFiles/MongoChem.dir/calculationwatcher.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/calculationwatcher.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obcharges.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obcharges.cpp.o -MF CMakeFiles/OpenBabel.dir/obcharges.cpp.o.d -o CMakeFiles/OpenBabel.dir/obcharges.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obcharges.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obcharges.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obcharges.h: In constructor 'Avogadro::QtPlugins::OBCharges::OBCharges(const std::string&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obcharges.h:65:15: warning: 'Avogadro::QtPlugins::OBCharges::m_identifier' will be initialized after [-Wreorder] 65 | std::string m_identifier; | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obcharges.cpp:65:77: warning: base 'Avogadro::Calc::ChargeModel' [-Wreorder] 65 | OBCharges::OBCharges(const std::string& id) : m_identifier(id), ChargeModel() | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obcharges.cpp:65:1: warning: when initialized here [-Wreorder] 65 | OBCharges::OBCharges(const std::string& id) : m_identifier(id), ChargeModel() | ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/submitcalculationdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/submitcalculationdialog.cpp.o -MF CMakeFiles/MongoChem.dir/submitcalculationdialog.cpp.o.d -o CMakeFiles/MongoChem.dir/submitcalculationdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem/submitcalculationdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Building CXX object avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/MongoChemPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChem_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/MongoChemPlugin.cpp.o -MF CMakeFiles/MongoChem.dir/MongoChemPlugin.cpp.o.d -o CMakeFiles/MongoChem.dir/MongoChemPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/MongoChemPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Linking CXX static library ../../../lib/avogadro2/staticplugins/MongoChem.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/cmake -P CMakeFiles/MongoChem.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/cmake -E cmake_link_script CMakeFiles/MongoChem.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/MongoChem.a CMakeFiles/MongoChem.dir/MongoChem_autogen/mocs_compilation.cpp.o CMakeFiles/MongoChem.dir/mongochem.cpp.o CMakeFiles/MongoChem.dir/mongochemwidget.cpp.o CMakeFiles/MongoChem.dir/girderrequest.cpp.o CMakeFiles/MongoChem.dir/configdialog.cpp.o CMakeFiles/MongoChem.dir/listmoleculesmodel.cpp.o CMakeFiles/MongoChem.dir/calculationsubmitter.cpp.o CMakeFiles/MongoChem.dir/calculationwatcher.cpp.o CMakeFiles/MongoChem.dir/submitcalculationdialog.cpp.o CMakeFiles/MongoChem.dir/MongoChemPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/MongoChem.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Built target MongoChem make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Generating ui_openmminputdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/ui_openmminputdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 68%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/mocs_compilation.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminputdialog.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/mocs_compilation.cpp:3: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/openmminput/openmminputdialog.h:29:53: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 29 | Qt::WindowFlags flag = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/openmminput/openmminput.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/EWIEGA46WW/moc_openmminput.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/mocs_compilation.cpp:2: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obfileformat.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obfileformat.cpp.o -MF CMakeFiles/OpenBabel.dir/obfileformat.cpp.o.d -o CMakeFiles/OpenBabel.dir/obfileformat.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obfileformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 68%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o -MF CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o.d -o CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obforcefielddialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 68%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o -MF CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o.d -o CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.h:29:53: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 29 | Qt::WindowFlags flag = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qatomic.h:41, from /usr/include/qt5/QtCore/qvariant.h:43, from /usr/include/qt5/QtCore/QVariant:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/ui_openmminputdialog.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.h:9: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.cpp: In member function 'QString Avogadro::QtPlugins::OpenMMInputDialog::generateInputDeck()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.cpp:959:44: warning: 'QTextStream& QTextStreamFunctions::fixed(QTextStream&)' is deprecated: Use Qt::fixed [-Wdeprecated-declarations] 959 | scriptStream << " nonbondedCutoff=" << fixed << qSetRealNumberPrecision(4) | ^~~~~ In file included from /usr/include/qt5/QtCore/qdebug.h:49, from /usr/include/qt5/QtCore/QDebug:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.cpp:21: /usr/include/qt5/QtCore/qtextstream.h:288:76: note: declared here 288 | Q_CORE_EXPORT QT_DEPRECATED_VERSION_X(5, 15, "Use Qt::fixed") QTextStream &fixed(QTextStream &s); | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.cpp:970:49: warning: 'QTextStream& QTextStreamFunctions::fixed(QTextStream&)' is deprecated: Use Qt::fixed [-Wdeprecated-declarations] 970 | scriptStream << ", ewaldErrorTolerance=" << fixed | ^~~~~ /usr/include/qt5/QtCore/qtextstream.h:288:76: note: declared here 288 | Q_CORE_EXPORT QT_DEPRECATED_VERSION_X(5, 15, "Use Qt::fixed") QTextStream &fixed(QTextStream &s); | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 69%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obprocess.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/obprocess.cpp.o -MF CMakeFiles/OpenBabel.dir/obprocess.cpp.o.d -o CMakeFiles/OpenBabel.dir/obprocess.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp: In member function 'void Avogadro::QtPlugins::OBProcess::queryReadFormatsPrepare()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp:154:23: warning: 'QMap::iterator QMap::insertMulti(const Key&, const T&) [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 154 | result.insertMulti(description, extension); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/QMap:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp:6: /usr/include/qt5/QtCore/qmap.h:1366:33: note: declared here 1366 | typename QMap::iterator QMap::insertMulti(const Key &key, const T &value) | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp: In member function 'void Avogadro::QtPlugins::OBProcess::queryWriteFormatsPrepare()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp:179:23: warning: 'QMap::iterator QMap::insertMulti(const Key&, const T&) [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 179 | result.insertMulti(description, extension); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qmap.h:1366:33: note: declared here 1366 | typename QMap::iterator QMap::insertMulti(const Key &key, const T &value) | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp: In member function 'void Avogadro::QtPlugins::OBProcess::queryForceFieldsPrepare()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp:279:23: warning: 'QMap::iterator QMap::insertMulti(const Key&, const T&) [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 279 | result.insertMulti(key, desc); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/qt5/QtCore/qmap.h:1366:33: note: declared here 1366 | typename QMap::iterator QMap::insertMulti(const Key &key, const T &value) | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp: In member function 'void Avogadro::QtPlugins::OBProcess::queryChargesPrepare()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/obprocess.cpp:318:23: warning: 'QMap::iterator QMap::insertMulti(const Key&, const T&) [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 318 | result.insertMulti(key, desc); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/qt5/QtCore/qmap.h:1366:33: note: declared here 1366 | typename QMap::iterator QMap::insertMulti(const Key &key, const T &value) | ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 69%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminput.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/openmminput.cpp.o -MF CMakeFiles/OpenMMInput.dir/openmminput.cpp.o.d -o CMakeFiles/OpenMMInput.dir/openmminput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminput.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminput.cpp:8: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.h:29:53: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 29 | Qt::WindowFlags flag = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminput.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminput.cpp:6: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.h: In member function 'void Avogadro::QtPlugins::OpenMMInput::menuActivated()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput/openmminputdialog.h:29:53: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 29 | Qt::WindowFlags flag = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 69%] Building CXX object avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o -MF CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o.d -o CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/OpenMMInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 69%] Linking CXX static library ../../../lib/avogadro2/staticplugins/OpenMMInput.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/bin/cmake -P CMakeFiles/OpenMMInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/OpenMMInput.a CMakeFiles/OpenMMInput.dir/OpenMMInput_autogen/mocs_compilation.cpp.o CMakeFiles/OpenMMInput.dir/openmminputdialog.cpp.o CMakeFiles/OpenMMInput.dir/openmminput.cpp.o CMakeFiles/OpenMMInput.dir/OpenMMInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/OpenMMInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 69%] Built target OpenMMInput make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 69%] Generating qrc_playertool.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/lib64/qt5/bin/rcc --name playertool --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/qrc_playertool.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool/playertool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 69%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o -MF CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 69%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/openbabel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/openbabel.cpp.o -MF CMakeFiles/OpenBabel.dir/openbabel.cpp.o.d -o CMakeFiles/OpenBabel.dir/openbabel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp: In member function 'virtual QList Avogadro::QtPlugins::OpenBabel::fileFormats() const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp:127:60: warning: 'QSet QList::toSet() const [with T = QString]' is deprecated: Use QSet(list.begin(), list.end()) instead. [-Wdeprecated-declarations] 127 | formatDescriptions.unite(m_readFormats.uniqueKeys().toSet()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/qt5/QtCore/qobject.h:49, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp:6: /usr/include/qt5/QtCore/qlist.h:413:13: note: declared here 413 | QSet toSet() const; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp:128:61: warning: 'QSet QList::toSet() const [with T = QString]' is deprecated: Use QSet(list.begin(), list.end()) instead. [-Wdeprecated-declarations] 128 | formatDescriptions.unite(m_writeFormats.uniqueKeys().toSet()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/qt5/QtCore/qdebug.h:52, from /usr/include/qt5/QtCore/QDebug:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp:20: /usr/include/qt5/QtCore/qset.h:406:30: note: declared here 406 | Q_OUTOFLINE_TEMPLATE QSet QList::toSet() const | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp:151:63: warning: 'QSet QList::toSet() const [with T = QString]' is deprecated: Use QSet(list.begin(), list.end()) instead. [-Wdeprecated-declarations] 151 | formatExtensions.unite(m_readFormats.values(qdesc).toSet()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/qt5/QtCore/qset.h:406:30: note: declared here 406 | Q_OUTOFLINE_TEMPLATE QSet QList::toSet() const | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp:155:64: warning: 'QSet QList::toSet() const [with T = QString]' is deprecated: Use QSet(list.begin(), list.end()) instead. [-Wdeprecated-declarations] 155 | formatExtensions.unite(m_writeFormats.values(qdesc).toSet()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/qt5/QtCore/qset.h:406:30: note: declared here 406 | Q_OUTOFLINE_TEMPLATE QSet QList::toSet() const | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp: In member function 'QString Avogadro::QtPlugins::OpenBabel::autoDetectForceField() const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp:822:45: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 822 | formula.split(QRegExp("\\d+"), QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/qobject.h:47: /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp:822:45: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 822 | formula.split(QRegExp("\\d+"), QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel/openbabel.cpp:822:18: warning: 'QStringList QString::split(const QRegExp&, SplitBehavior) const' is deprecated: Use split(const QRegularExpression &, Qt::SplitBehavior) variant instead [-Wdeprecated-declarations] 822 | formula.split(QRegExp("\\d+"), QString::SkipEmptyParts); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:622:17: note: declared here 622 | QStringList split(const QRegExp &sep, SplitBehavior behavior) const; | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Building CXX object avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabel_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o -MF CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o.d -o CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/OpenBabelPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Linking CXX static library ../../../lib/avogadro2/staticplugins/OpenBabel.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/cmake -P CMakeFiles/OpenBabel.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenBabel.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/OpenBabel.a CMakeFiles/OpenBabel.dir/OpenBabel_autogen/mocs_compilation.cpp.o CMakeFiles/OpenBabel.dir/obcharges.cpp.o CMakeFiles/OpenBabel.dir/obfileformat.cpp.o CMakeFiles/OpenBabel.dir/obforcefielddialog.cpp.o CMakeFiles/OpenBabel.dir/obprocess.cpp.o CMakeFiles/OpenBabel.dir/openbabel.cpp.o CMakeFiles/OpenBabel.dir/OpenBabelPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/OpenBabel.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Built target OpenBabel make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/playertool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/playertool.cpp.o -MF CMakeFiles/PlayerTool.dir/playertool.cpp.o.d -o CMakeFiles/PlayerTool.dir/playertool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool/playertool.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool/playertool.cpp: In member function 'void Avogadro::QtPlugins::PlayerTool::recordMovie()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool/playertool.cpp:286:45: warning: 'static QPixmap QPixmap::grabWindow(WId, int, int, int, int)' is deprecated: Use QScreen::grabWindow() instead [-Wdeprecated-declarations] 286 | QPixmap pixmap = QPixmap::grabWindow(m_glWidget->winId()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtGui/qicon.h:46, from /usr/include/qt5/QtGui/QIcon:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool/playertool.cpp:16: /usr/include/qt5/QtGui/qpixmap.h:118:20: note: declared here 118 | static QPixmap grabWindow(WId, int x = 0, int y = 0, int w = -1, int h = -1); | ^~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool/playertool.cpp:330:45: warning: 'static QPixmap QPixmap::grabWindow(WId, int, int, int, int)' is deprecated: Use QScreen::grabWindow() instead [-Wdeprecated-declarations] 330 | QPixmap pixmap = QPixmap::grabWindow(m_glWidget->winId()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtGui/qpixmap.h:118:20: note: declared here 118 | static QPixmap grabWindow(WId, int x = 0, int y = 0, int w = -1, int h = -1); | ^~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool/playertool.cpp:367:45: warning: 'static QPixmap QPixmap::grabWindow(WId, int, int, int, int)' is deprecated: Use QScreen::grabWindow() instead [-Wdeprecated-declarations] 367 | QPixmap pixmap = QPixmap::grabWindow(m_glWidget->winId()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtGui/qpixmap.h:118:20: note: declared here 118 | static QPixmap grabWindow(WId, int x = 0, int y = 0, int w = -1, int h = -1); | ^~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o -MF CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o.d -o CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/qrc_playertool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Building CXX object avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o -MF CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o.d -o CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/PlayerToolPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Linking CXX static library ../../../lib/avogadro2/staticplugins/PlayerTool.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/bin/cmake -P CMakeFiles/PlayerTool.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/bin/cmake -E cmake_link_script CMakeFiles/PlayerTool.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/PlayerTool.a CMakeFiles/PlayerTool.dir/PlayerTool_autogen/mocs_compilation.cpp.o CMakeFiles/PlayerTool.dir/playertool.cpp.o CMakeFiles/PlayerTool.dir/qrc_playertool.cpp.o CMakeFiles/PlayerTool.dir/PlayerToolPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/PlayerTool.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Built target PlayerTool make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o -MF CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertytables.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertytables.cpp.o -MF CMakeFiles/PropertyTables.dir/propertytables.cpp.o.d -o CMakeFiles/PropertyTables.dir/propertytables.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertytables.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertyview.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertyview.cpp.o -MF CMakeFiles/PropertyTables.dir/propertyview.cpp.o.d -o CMakeFiles/PropertyTables.dir/propertyview.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.h: In constructor 'Avogadro::PropertyView::PropertyView(Avogadro::PropertyType, QWidget*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.h:35:20: warning: 'Avogadro::PropertyView::m_molecule' will be initialized after [-Wreorder] 35 | QtGui::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.h:34:16: warning: 'Avogadro::PropertyType Avogadro::PropertyView::m_type' [-Wreorder] 34 | PropertyType m_type; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.cpp:25:1: warning: when initialized here [-Wreorder] 25 | PropertyView::PropertyView(PropertyType type, QWidget* parent) | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.cpp: In member function 'virtual void Avogadro::PropertyView::selectionChanged(const QItemSelection&, const QItemSelection&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.cpp:100:18: warning: comparison of integer expressions of different signedness: 'int' and 'Avogadro::Index' {aka 'long unsigned int'} [-Wsign-compare] 100 | if (rowNum >= m_molecule->atomCount()) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertyview.cpp:105:18: warning: comparison of integer expressions of different signedness: 'int' and 'Avogadro::Index' {aka 'long unsigned int'} [-Wsign-compare] 105 | if (rowNum >= m_molecule->bondCount()) | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertymodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/propertymodel.cpp.o -MF CMakeFiles/PropertyTables.dir/propertymodel.cpp.o.d -o CMakeFiles/PropertyTables.dir/propertymodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp: In member function 'virtual QVariant Avogadro::PropertyModel::data(const QModelIndex&, int) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp:186:13: warning: comparison of integer expressions of different signedness: 'int' and 'Avogadro::Index' {aka 'long unsigned int'} [-Wsign-compare] 186 | row < m_molecule->atomCount()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp:192:20: warning: comparison of integer expressions of different signedness: 'int' and 'Avogadro::Index' {aka 'long unsigned int'} [-Wsign-compare] 192 | row < m_molecule->residueCount()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp:212:13: warning: comparison of integer expressions of different signedness: 'int' and 'Avogadro::Index' {aka 'long unsigned int'} [-Wsign-compare] 212 | if (row >= m_molecule->atomCount() || column > AtomColumns) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp:245:13: warning: comparison of integer expressions of different signedness: 'int' and 'Avogadro::Index' {aka 'long unsigned int'} [-Wsign-compare] 245 | if (row >= m_molecule->bondCount() || column > BondColumns) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp:270:13: warning: comparison of integer expressions of different signedness: 'int' and 'Avogadro::Index' {aka 'long unsigned int'} [-Wsign-compare] 270 | if (row >= m_molecule->residueCount() || column > ResidueColumns) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp:293:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 293 | if (row > m_angles.size() || column > AngleColumns) | ~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp:323:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'long unsigned int'} [-Wsign-compare] 323 | if (row > m_torsions.size() || column > TorsionColumns) | ~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp:200:8: warning: unused variable 'sortRole' [-Wunused-variable] 200 | bool sortRole = | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp: In member function 'bool Avogadro::PropertyModel::fragmentRecurse(const Avogadro::QtGui::RWBond&, const Avogadro::QtGui::RWAtom&, const Avogadro::QtGui::RWAtom&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables/propertymodel.cpp:625:47: warning: typedef 'BondIter' locally defined but not used [-Wunused-local-typedefs] 625 | typedef std::vector::const_iterator BondIter; | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Building CXX object avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o -MF CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Building CXX object avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTables_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o -MF CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o.d -o CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/PropertyTablesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 72%] Linking CXX static library ../../../lib/avogadro2/staticplugins/PropertyTables.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables && /usr/bin/cmake -P CMakeFiles/PropertyTables.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables && /usr/bin/cmake -E cmake_link_script CMakeFiles/PropertyTables.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/PropertyTables.a CMakeFiles/PropertyTables.dir/PropertyTables_autogen/mocs_compilation.cpp.o CMakeFiles/PropertyTables.dir/propertytables.cpp.o CMakeFiles/PropertyTables.dir/propertymodel.cpp.o CMakeFiles/PropertyTables.dir/propertyview.cpp.o CMakeFiles/PropertyTables.dir/PropertyTablesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/PropertyTables.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 72%] Built target PropertyTables make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 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-I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 71%] Building CXX object avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/povray.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/povray.cpp.o -MF CMakeFiles/POVRay.dir/povray.cpp.o.d -o CMakeFiles/POVRay.dir/povray.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/povray/povray.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/povray/povray.cpp:11: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 73%] Building CXX object avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRay_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o -MF CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o.d -o CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/POVRayPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 73%] Linking CXX static library ../../../lib/avogadro2/staticplugins/POVRay.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray && /usr/bin/cmake -P CMakeFiles/POVRay.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray && /usr/bin/cmake -E cmake_link_script CMakeFiles/POVRay.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/POVRay.a CMakeFiles/POVRay.dir/POVRay_autogen/mocs_compilation.cpp.o CMakeFiles/POVRay.dir/povray.cpp.o CMakeFiles/POVRay.dir/POVRayPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/POVRay.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 73%] Built target POVRay make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 73%] Building CXX object avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o -MF CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o.d -o CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetViewPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/CMakeFiles/Select.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 73%] Building CXX object avogadro/qtplugins/select/CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/select/CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 74%] Building CXX object avogadro/qtplugins/select/CMakeFiles/Select.dir/select.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/select/CMakeFiles/Select.dir/select.cpp.o -MF CMakeFiles/Select.dir/select.cpp.o.d -o CMakeFiles/Select.dir/select.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.h: In constructor 'Avogadro::QtPlugins::Select::Select(QObject*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.h:63:29: warning: 'Avogadro::QtPlugins::Select::m_layerManager' will be initialized after [-Wreorder] 63 | QtGui::PluginLayerManager m_layerManager; | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.h:61:20: warning: 'Avogadro::QtGui::Molecule* Avogadro::QtPlugins::Select::m_molecule' [-Wreorder] 61 | QtGui::Molecule* m_molecule; | ^~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:27:1: warning: when initialized here [-Wreorder] 27 | Select::Select(QObject* parent_) | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp: In member function 'void Avogadro::QtPlugins::Select::selectWater()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:233:19: warning: loop variable 'residue' creates a copy from type 'const Avogadro::Core::Residue' [-Wrange-loop-construct] 233 | for (const auto residue : m_molecule->residues()) { | ^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:233:19: note: use reference type to prevent copying 233 | for (const auto residue : m_molecule->residues()) { | ^~~~~~~ | & /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp: In member function 'void Avogadro::QtPlugins::Select::selectBackboneAtoms()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:249:19: warning: loop variable 'residue' creates a copy from type 'const Avogadro::Core::Residue' [-Wrange-loop-construct] 249 | for (const auto residue : m_molecule->residues()) { | ^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:249:19: note: use reference type to prevent copying 249 | for (const auto residue : m_molecule->residues()) { | ^~~~~~~ | & /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp: In member function 'void Avogadro::QtPlugins::Select::selectSidechainAtoms()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:276:19: warning: loop variable 'residue' creates a copy from type 'const Avogadro::Core::Residue' [-Wrange-loop-construct] 276 | for (const auto residue : m_molecule->residues()) { | ^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:276:19: note: use reference type to prevent copying 276 | for (const auto residue : m_molecule->residues()) { | ^~~~~~~ | & /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp: In member function 'void Avogadro::QtPlugins::Select::selectAtomIndex()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:402:35: warning: comparison of integer expressions of different signedness: 'Avogadro::Index' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 402 | for (Index i = start; i <= last; ++i) { | ~~^~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp: In member function 'void Avogadro::QtPlugins::Select::selectResidue()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:438:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 438 | if (index >= 1 && index < residueList.size()) { | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select/select.cpp:455:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 455 | if (index >= 1 && index < residueList.size()) { | ~~~~~~^~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 74%] Building CXX object avogadro/qtplugins/select/CMakeFiles/Select.dir/SelectPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/Select_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/select/CMakeFiles/Select.dir/SelectPlugin.cpp.o -MF CMakeFiles/Select.dir/SelectPlugin.cpp.o.d -o CMakeFiles/Select.dir/SelectPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/SelectPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 74%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Select.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select && /usr/bin/cmake -P CMakeFiles/Select.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select && /usr/bin/cmake -E cmake_link_script CMakeFiles/Select.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Select.a CMakeFiles/Select.dir/Select_autogen/mocs_compilation.cpp.o CMakeFiles/Select.dir/select.cpp.o CMakeFiles/Select.dir/SelectPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Select.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 74%] Built target Select make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Automatic MOC for target Selection cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontool.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontoolwidget.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontool.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontool.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/selectiontool/selectiontool.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontool.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontool.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontoolwidget.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/selectiontool/selectiontoolwidget.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontoolwidget.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/EWIEGA46WW/moc_selectiontoolwidget.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/include/SelectionPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include/SelectionPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/include/SelectionPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/selectiontool/Selection_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Built target Selection_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Building CXX object avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o -MF CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Building CXX object avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o -MF CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o.d -o CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spacegroup/spacegroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 73%] Building CXX object avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/resetview.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/ResetView_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/resetview.cpp.o -MF CMakeFiles/ResetView.dir/resetview.cpp.o.d -o CMakeFiles/ResetView.dir/resetview.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/resetview/resetview.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/resetview/resetview.cpp:9: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Building CXX object avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroup_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o -MF CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o.d -o CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/SpaceGroupPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Linking CXX static library ../../../lib/avogadro2/staticplugins/SpaceGroup.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -P CMakeFiles/SpaceGroup.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E cmake_link_script CMakeFiles/SpaceGroup.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/SpaceGroup.a CMakeFiles/SpaceGroup.dir/SpaceGroup_autogen/mocs_compilation.cpp.o CMakeFiles/SpaceGroup.dir/spacegroup.cpp.o CMakeFiles/SpaceGroup.dir/SpaceGroupPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/SpaceGroup.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Built target SpaceGroup make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ResetView.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview && /usr/bin/cmake -P CMakeFiles/ResetView.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview && /usr/bin/cmake -E cmake_link_script CMakeFiles/ResetView.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ResetView.a CMakeFiles/ResetView.dir/ResetView_autogen/mocs_compilation.cpp.o CMakeFiles/ResetView.dir/resetview.cpp.o CMakeFiles/ResetView.dir/ResetViewPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ResetView.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Built target ResetView make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/CMakeFiles/SVG.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Automatic MOC for target Surfaces cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/gaussiansetconcurrent.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/slatersetconcurrent.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfacedialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfaces.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/gaussiansetconcurrent.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/slatersetconcurrent.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfacedialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/surfaces/surfaces.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/gaussiansetconcurrent.h" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/gaussiansetconcurrent.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_slatersetconcurrent.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/slatersetconcurrent.h" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_slatersetconcurrent.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/slatersetconcurrent.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_slatersetconcurrent.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfacedialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/surfacedialog.h" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfacedialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfacedialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfaces.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/surfaces/surfaces.h" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfaces.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfaces.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include/SurfacesPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -I/builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -I/usr/include/qt5/QtConcurrent -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include/SurfacesPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include/SurfacesPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/surfaces/Surfaces_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Built target Surfaces_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 76%] Generating ui_vibrationdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/ui_vibrationdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Building CXX object avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtSvg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o -MF CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 76%] Building CXX object avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/Spectra_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/Spectra_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Spectra.dir/Spectra_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Spectra.dir/Spectra_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_vibrationdialog.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/mocs_compilation.cpp:3: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/spectra/vibrationdialog.h:31:66: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 31 | VibrationDialog(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/spectra/spectra.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/EWIEGA46WW/moc_spectra.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/mocs_compilation.cpp:2: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Building CXX object avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/vibrationdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/vibrationdialog.cpp.o -MF CMakeFiles/Spectra.dir/vibrationdialog.cpp.o.d -o CMakeFiles/Spectra.dir/vibrationdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.h:31:66: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 31 | VibrationDialog(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/qt5/QtWidgets/qdialog.h:43, from /usr/include/qt5/QtWidgets/QDialog:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.h:9: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Building CXX object avogadro/qtplugins/svg/CMakeFiles/SVG.dir/svg.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtSvg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/svg/CMakeFiles/SVG.dir/svg.cpp.o -MF CMakeFiles/SVG.dir/svg.cpp.o.d -o CMakeFiles/SVG.dir/svg.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.cpp:13: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Geometry:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.cpp:6: In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'Avogadro::QtPlugins::SVG::SVGAtom::SVGAtom(Avogadro::QtPlugins::SVG::SVGAtom const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.h:47:10, inlined from 'std::__new_allocator::construct(Avogadro::QtPlugins::SVG::SVGAtom*, Avogadro::QtPlugins::SVG::SVGAtom const&)void' at /usr/include/c++/13/bits/new_allocator.h:187:4, inlined from 'std::allocator_traits >::construct(std::allocator&, Avogadro::QtPlugins::SVG::SVGAtom*, Avogadro::QtPlugins::SVG::SVGAtom const&)void' at /usr/include/c++/13/bits/alloc_traits.h:537:17, inlined from 'std::vector >::push_back(Avogadro::QtPlugins::SVG::SVGAtom const&)' at /usr/include/c++/13/bits/stl_vector.h:1283:30, inlined from 'Avogadro::QtPlugins::SVG::getPositions()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.cpp:154:22: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&atom + 24].m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.cpp: In member function 'Avogadro::QtPlugins::SVG::getPositions()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg/svg.cpp:152:13: note: 'atom' declared here 152 | SVGAtom atom(atomPositions[i].cast(), pos, i, | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Building CXX object avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/vibrationmodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/vibrationmodel.cpp.o -MF CMakeFiles/Spectra.dir/vibrationmodel.cpp.o.d -o CMakeFiles/Spectra.dir/vibrationmodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationmodel.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationmodel.cpp: In member function 'virtual QVariant Avogadro::QtPlugins::VibrationModel::data(const QModelIndex&, int) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationmodel.cpp:76:49: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 76 | m_molecule->vibrationFrequencies().size() <= idx.row()) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationmodel.cpp:83:55: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 83 | if (m_molecule->vibrationFrequencies().size() > idx.row()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationmodel.cpp:88:57: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 88 | if (m_molecule->vibrationIRIntensities().size() > idx.row()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationmodel.cpp:93:60: warning: comparison of integer expressions of different signedness: 'std::size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] 93 | if (m_molecule->vibrationRamanIntensities().size() > idx.row()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationmodel.cpp: In member function 'virtual QModelIndex Avogadro::QtPlugins::VibrationModel::index(int, int, const QModelIndex&) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationmodel.cpp:110:13: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] 110 | row < m_molecule->vibrationFrequencies().size()) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Building CXX object avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVGPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVG_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtSvg -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/svg/CMakeFiles/SVG.dir/SVGPlugin.cpp.o -MF CMakeFiles/SVG.dir/SVGPlugin.cpp.o.d -o CMakeFiles/SVG.dir/SVGPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/SVGPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Linking CXX static library ../../../lib/avogadro2/staticplugins/SVG.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg && /usr/bin/cmake -P CMakeFiles/SVG.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg && /usr/bin/cmake -E cmake_link_script CMakeFiles/SVG.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/SVG.a CMakeFiles/SVG.dir/SVG_autogen/mocs_compilation.cpp.o CMakeFiles/SVG.dir/svg.cpp.o CMakeFiles/SVG.dir/SVGPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/SVG.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Built target SVG make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 78%] Building CXX object avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o -MF CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Building CXX object avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/spectra.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/spectra.cpp.o -MF CMakeFiles/Spectra.dir/spectra.cpp.o.d -o CMakeFiles/Spectra.dir/spectra.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/spectra.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/spectra.cpp:7: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.h:31:66: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 31 | VibrationDialog(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/spectra.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/spectra.cpp:6: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.h: In member function 'void Avogadro::QtPlugins::Spectra::openDialog()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra/vibrationdialog.h:31:66: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 31 | VibrationDialog(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 78%] Building CXX object avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/Spectra_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o -MF CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o.d -o CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/SpectraPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Spectra.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/cmake -P CMakeFiles/Spectra.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/Spectra.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Spectra.a CMakeFiles/Spectra.dir/Spectra_autogen/mocs_compilation.cpp.o CMakeFiles/Spectra.dir/vibrationdialog.cpp.o CMakeFiles/Spectra.dir/vibrationmodel.cpp.o CMakeFiles/Spectra.dir/spectra.cpp.o CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Spectra.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Built target Spectra make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 78%] Building CXX object avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/vrml.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/vrml.cpp.o -MF CMakeFiles/VRML.dir/vrml.cpp.o.d -o CMakeFiles/VRML.dir/vrml.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vrml/vrml.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vrml/vrml.cpp:10: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Automatic MOC for target apbs cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbs.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsoutputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/opendxreader.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbs.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/apbsoutputdialog.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/apbs/opendxreader.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/apbs/apbsPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbs.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/apbs/apbs.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbs.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs/apbs.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbs.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/apbs/apbsdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs/apbsdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsoutputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/apbs/apbsoutputdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsoutputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs/apbsoutputdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/EWIEGA46WW/moc_apbsoutputdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/include/apbsPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/apbs/apbsPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/include/apbsPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbsPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/include/apbsPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/apbs/apbs_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Built target apbs_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Building CXX object avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRMLPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRML_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/VRMLPlugin.cpp.o -MF CMakeFiles/VRML.dir/VRMLPlugin.cpp.o.d -o CMakeFiles/VRML.dir/VRMLPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/VRMLPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Linking CXX static library ../../../lib/avogadro2/staticplugins/VRML.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml && /usr/bin/cmake -P CMakeFiles/VRML.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml && /usr/bin/cmake -E cmake_link_script CMakeFiles/VRML.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/VRML.a CMakeFiles/VRML.dir/VRML_autogen/mocs_compilation.cpp.o CMakeFiles/VRML.dir/vrml.cpp.o CMakeFiles/VRML.dir/VRMLPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/VRML.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Built target VRML make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Automatic MOC for target Cp2kInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinput.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/cp2kinput/cp2kinput.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinput.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinput.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinput.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinputdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include/Cp2kInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include/Cp2kInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include/Cp2kInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Built target Cp2kInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 79%] Automatic MOC for target GamessInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamesshighlighter.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinputdialog.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamesshighlighter.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinput.cpp" AutoGen: Parsing "SRC:/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/gamessinput/gamesshighlighter.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamesshighlighter.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/gamessinput/gamessinput.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinput.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinput.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinput.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/gamessinput/gamessinputdialog.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include/GamessInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include/GamessInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include/GamessInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Built target GamessInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Automatic MOC for target QuantumInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/quantuminput/quantuminput.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/quantuminput/quantuminput.cpp" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/EWIEGA46WW/moc_quantuminput.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/quantuminput/quantuminput.h" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/EWIEGA46WW/moc_quantuminput.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput/quantuminput.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/EWIEGA46WW/moc_quantuminput.cpp.d" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include/QuantumInputPlugin.moc", because it doesn't exist, from "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp" /usr/lib64/qt5/bin/moc -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/qt5/QtNetwork -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include/QuantumInputPlugin.moc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include/QuantumInputPlugin.moc.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Built target QuantumInput_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Building CXX object avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o -MF CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o -MF CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o.d -o CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats/scriptfileformats.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Building CXX object avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/command.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/command.cpp.o -MF CMakeFiles/commands.dir/command.cpp.o.d -o CMakeFiles/commands.dir/command.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts/command.cpp In file included from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts/command.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts/command.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts/command.cpp: In member function 'void Avogadro::QtPlugins::Command::updateActions()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts/command.cpp:286:67: warning: 'QList QMap::uniqueKeys() const [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 286 | foreach (const QString& programName, m_commandScripts.uniqueKeys()) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/qt5/QtCore/QMap:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts/command.h:11: /usr/include/qt5/QtCore/qmap.h:1354:12: note: declared here 1354 | QList QMap::uniqueKeys() const | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts/command.cpp:287:50: warning: 'QList QMap::values(const Key&) const [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 287 | QStringList scripts = m_commandScripts.values(programName); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/qt5/QtCore/qmap.h:1360:10: note: declared here 1360 | QList QMap::values(const Key &key) const | ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Building CXX object avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commandsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commands_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/commandsPlugin.cpp.o -MF CMakeFiles/commands.dir/commandsPlugin.cpp.o.d -o CMakeFiles/commands.dir/commandsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/commandsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Linking CXX static library ../../../lib/avogadro2/staticplugins/commands.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts && /usr/bin/cmake -P CMakeFiles/commands.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts && /usr/bin/cmake -E cmake_link_script CMakeFiles/commands.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/commands.a CMakeFiles/commands.dir/commands_autogen/mocs_compilation.cpp.o CMakeFiles/commands.dir/command.cpp.o CMakeFiles/commands.dir/commandsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/commands.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Built target commands make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o -MF CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o.d -o CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats/fileformatscript.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats/fileformatscript.cpp: In member function 'void Avogadro::QtPlugins::FileFormatScript::readMetaData()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats/fileformatscript.cpp:219:52: warning: typedef 'StringVectorIter' locally defined but not used [-Wunused-local-typedefs] 219 | typedef std::vector::const_iterator StringVectorIter; | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Building CXX object avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o -MF CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Building CXX object avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormats_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o -MF CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o.d -o CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/ScriptFileFormatsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ScriptFileFormats.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -P CMakeFiles/ScriptFileFormats.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -E cmake_link_script CMakeFiles/ScriptFileFormats.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ScriptFileFormats.a CMakeFiles/ScriptFileFormats.dir/ScriptFileFormats_autogen/mocs_compilation.cpp.o CMakeFiles/ScriptFileFormats.dir/scriptfileformats.cpp.o CMakeFiles/ScriptFileFormats.dir/fileformatscript.cpp.o CMakeFiles/ScriptFileFormats.dir/ScriptFileFormatsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ScriptFileFormats.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Built target ScriptFileFormats make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Generating ui_downloaderwidget.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/ui_downloaderwidget.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader/downloaderwidget.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 82%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o -MF CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Building CXX object avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o -MF CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o.d -o CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.h: In constructor 'Avogadro::QtPlugins::ScriptChargeModel::ScriptChargeModel(const QString&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.h:86:8: warning: 'Avogadro::QtPlugins::ScriptChargeModel::m_electrostatics' will be initialized after [-Wreorder] 86 | bool m_electrostatics; | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.h:82:10: warning: 'Avogadro::QtPlugins::ScriptChargeModel::Format Avogadro::QtPlugins::ScriptChargeModel::m_inputFormat' [-Wreorder] 82 | Format m_inputFormat; | ^~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:28:1: warning: when initialized here [-Wreorder] 28 | ScriptChargeModel::ScriptChargeModel(const QString& scriptFileName_) | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp: In member function 'virtual Avogadro::MatrixX Avogadro::QtPlugins::ScriptChargeModel::partialCharges(Avogadro::Core::Molecule&) const': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:95:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 95 | for (unsigned int i = 0; i < lines.size(); ++i) { | ~~^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp: In member function 'void Avogadro::QtPlugins::ScriptChargeModel::processElementString(const QString&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:360:62: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 360 | QStringList strList = str2.split(QRegExp("\\s+"), QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/QString:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.h:13: /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:360:62: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 360 | QStringList strList = str2.split(QRegExp("\\s+"), QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptchargemodel.cpp:360:35: warning: 'QStringList QString::split(const QRegExp&, SplitBehavior) const' is deprecated: Use split(const QRegularExpression &, Qt::SplitBehavior) variant instead [-Wdeprecated-declarations] 360 | QStringList strList = str2.split(QRegExp("\\s+"), QString::SkipEmptyParts); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:622:17: note: declared here 622 | QStringList split(const QRegExp &sep, SplitBehavior behavior) const; | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o -MF CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o.d -o CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges/scriptcharges.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 82%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o -MF CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o.d -o CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader/plugindownloader.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptCharges_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o -MF CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o.d -o CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/ScriptChargesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Linking CXX static library ../../../lib/avogadro2/staticplugins/ScriptCharges.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -P CMakeFiles/ScriptCharges.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/ScriptCharges.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/ScriptCharges.a CMakeFiles/ScriptCharges.dir/ScriptCharges_autogen/mocs_compilation.cpp.o CMakeFiles/ScriptCharges.dir/scriptchargemodel.cpp.o CMakeFiles/ScriptCharges.dir/scriptcharges.cpp.o CMakeFiles/ScriptCharges.dir/ScriptChargesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/ScriptCharges.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Built target ScriptCharges make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o -MF CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o -MF CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o.d -o CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader/downloaderwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/ballandstick.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/ballandstick.cpp.o -MF CMakeFiles/BallStick.dir/ballandstick.cpp.o.d -o CMakeFiles/BallStick.dir/ballandstick.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/ballandstick/ballandstick.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/ballandstick/ballandstick.cpp:12: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o -MF CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o.d -o CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader/zipextracter.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader/zipextracter.cpp: In member function 'QList Avogadro::QtPlugins::ZipExtracter::extract(std::string, std::string)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader/zipextracter.cpp:110:8: warning: unused variable 'itrCount' [-Wunused-variable] 110 | long itrCount = 0; | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStick_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o -MF CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o.d -o CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/BallStickPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Linking CXX static library ../../../lib/avogadro2/staticplugins/BallStick.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -P CMakeFiles/BallStick.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E cmake_link_script CMakeFiles/BallStick.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/BallStick.a CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o CMakeFiles/BallStick.dir/ballandstick.cpp.o CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/BallStick.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Built target BallStick make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloader_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o -MF CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o.d -o CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/PluginDownloaderPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Linking CXX static library ../../../lib/avogadro2/staticplugins/PluginDownloader.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -P CMakeFiles/PluginDownloader.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -E cmake_link_script CMakeFiles/PluginDownloader.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/PluginDownloader.a CMakeFiles/PluginDownloader.dir/PluginDownloader_autogen/mocs_compilation.cpp.o CMakeFiles/PluginDownloader.dir/plugindownloader.cpp.o CMakeFiles/PluginDownloader.dir/downloaderwidget.cpp.o CMakeFiles/PluginDownloader.dir/zipextracter.cpp.o CMakeFiles/PluginDownloader.dir/PluginDownloaderPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/PluginDownloader.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Built target PluginDownloader make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/CMakeFiles/Force.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/force/CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/force/CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o -MF CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/force/CMakeFiles/Force.dir/force.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/force/CMakeFiles/Force.dir/force.cpp.o -MF CMakeFiles/Force.dir/force.cpp.o.d -o CMakeFiles/Force.dir/force.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/force/force.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/force/force.cpp:12: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/force/CMakeFiles/Force.dir/ForcePlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/Force_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/force/CMakeFiles/Force.dir/ForcePlugin.cpp.o -MF CMakeFiles/Force.dir/ForcePlugin.cpp.o.d -o CMakeFiles/Force.dir/ForcePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/ForcePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Force.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force && /usr/bin/cmake -P CMakeFiles/Force.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force && /usr/bin/cmake -E cmake_link_script CMakeFiles/Force.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Force.a CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o CMakeFiles/Force.dir/force.cpp.o CMakeFiles/Force.dir/ForcePlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Force.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Built target Force make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/closecontacts.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/closecontacts.cpp.o -MF CMakeFiles/CloseContacts.dir/closecontacts.cpp.o.d -o CMakeFiles/CloseContacts.dir/closecontacts.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/closecontacts/closecontacts.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/closecontacts/closecontacts.cpp:17: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContacts_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o -MF CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o.d -o CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CloseContactsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Linking CXX static library ../../../lib/avogadro2/staticplugins/CloseContacts.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts && /usr/bin/cmake -P CMakeFiles/CloseContacts.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts && /usr/bin/cmake -E cmake_link_script CMakeFiles/CloseContacts.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/CloseContacts.a CMakeFiles/CloseContacts.dir/CloseContacts_autogen/mocs_compilation.cpp.o CMakeFiles/CloseContacts.dir/closecontacts.cpp.o CMakeFiles/CloseContacts.dir/CloseContactsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/CloseContacts.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Built target CloseContacts make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/licorice.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/licorice.cpp.o -MF CMakeFiles/Licorice.dir/licorice.cpp.o.d -o CMakeFiles/Licorice.dir/licorice.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/licorice/licorice.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/licorice/licorice.cpp:12: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/Licorice_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o -MF CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o.d -o CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/LicoricePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Licorice.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice && /usr/bin/cmake -P CMakeFiles/Licorice.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice && /usr/bin/cmake -E cmake_link_script CMakeFiles/Licorice.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Licorice.a CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o CMakeFiles/Licorice.dir/licorice.cpp.o CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Licorice.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Built target Licorice make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o -MF CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/meshes.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/meshes.cpp.o -MF CMakeFiles/Meshes.dir/meshes.cpp.o.d -o CMakeFiles/Meshes.dir/meshes.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes/meshes.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes/meshes.cpp:13: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes/meshes.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes/meshes.cpp:6: In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void' at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from 'std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from 'std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from 'std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from 'std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from 'std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)' at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from 'std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)' at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from 'Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from 'Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from 'Avogadro::QtPlugins::Meshes::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes/meshes.cpp:86:51: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&D.386383].m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes/meshes.cpp: In member function 'Avogadro::QtPlugins::Meshes::process(Avogadro::QtGui::Molecule const&, Avogadro::Rendering::GroupNode&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes/meshes.cpp:86:51: note: '' declared here 86 | Core::Array colorsRGB(colors.size()); | ^ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 84%] Building CXX object avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/Meshes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o -MF CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o.d -o CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/MeshesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 84%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Meshes.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes && /usr/bin/cmake -P CMakeFiles/Meshes.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes && /usr/bin/cmake -E cmake_link_script CMakeFiles/Meshes.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Meshes.a CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o CMakeFiles/Meshes.dir/meshes.cpp.o CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Meshes.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 84%] Built target Meshes make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 84%] Building CXX object avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o -MF CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Building CXX object avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/noncovalent.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/noncovalent.cpp.o -MF CMakeFiles/NonCovalent.dir/noncovalent.cpp.o.d -o CMakeFiles/NonCovalent.dir/noncovalent.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/noncovalent/noncovalent.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/noncovalent/noncovalent.cpp:17: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Building CXX object avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o -MF CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o.d -o CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaals/vanderwaals.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaals/vanderwaals.cpp:11: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Building CXX object avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalent_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o -MF CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o.d -o CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/NonCovalentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Linking CXX static library ../../../lib/avogadro2/staticplugins/NonCovalent.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -P CMakeFiles/NonCovalent.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -E cmake_link_script CMakeFiles/NonCovalent.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/NonCovalent.a CMakeFiles/NonCovalent.dir/NonCovalent_autogen/mocs_compilation.cpp.o CMakeFiles/NonCovalent.dir/noncovalent.cpp.o CMakeFiles/NonCovalent.dir/NonCovalentPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/NonCovalent.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Built target NonCovalent make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Building CXX object avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaals_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o -MF CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o.d -o CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/VanDerWaalsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Building CXX object avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAO_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAO_autogen/mocs_compilation.cpp.o -MF CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAO_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAO_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Linking CXX static library ../../../lib/avogadro2/staticplugins/VanDerWaals.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -P CMakeFiles/VanDerWaals.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E cmake_link_script CMakeFiles/VanDerWaals.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/VanDerWaals.a CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/VanDerWaals.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Built target VanDerWaals make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Building CXX object avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Building CXX object avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/vanderwaalsao.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/vanderwaalsao.cpp.o -MF CMakeFiles/VanDerWaalsAO.dir/vanderwaalsao.cpp.o.d -o CMakeFiles/VanDerWaalsAO.dir/vanderwaalsao.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaalsao/vanderwaalsao.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaalsao/vanderwaalsao.cpp:12: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Building CXX object avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAOPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAO_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAOPlugin.cpp.o -MF CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAOPlugin.cpp.o.d -o CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAOPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/VanDerWaalsAOPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 86%] Linking CXX static library ../../../lib/avogadro2/staticplugins/VanDerWaalsAO.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/cmake -P CMakeFiles/VanDerWaalsAO.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/cmake -E cmake_link_script CMakeFiles/VanDerWaalsAO.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/VanDerWaalsAO.a CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAO_autogen/mocs_compilation.cpp.o CMakeFiles/VanDerWaalsAO.dir/vanderwaalsao.cpp.o CMakeFiles/VanDerWaalsAO.dir/VanDerWaalsAOPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/VanDerWaalsAO.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 86%] Built target VanDerWaalsAO make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Building CXX object avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/wireframe.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/wireframe.cpp.o -MF CMakeFiles/Wireframe.dir/wireframe.cpp.o.d -o CMakeFiles/Wireframe.dir/wireframe.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/wireframe/wireframe.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/wireframe/wireframe.cpp:11: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 87%] Building CXX object avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/Wireframe_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o -MF CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o.d -o CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/WireframePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Wireframe.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe && /usr/bin/cmake -P CMakeFiles/Wireframe.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe && /usr/bin/cmake -E cmake_link_script CMakeFiles/Wireframe.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Wireframe.a CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o CMakeFiles/Wireframe.dir/wireframe.cpp.o CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Wireframe.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Built target Wireframe make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 87%] Building CXX object avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o -MF CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/overlayaxes/overlayaxes.h:13, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/EWIEGA46WW/moc_overlayaxes.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/mocs_compilation.cpp:2: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Building CXX object avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o -MF CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o.d -o CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.h:13, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxesPlugin.cpp:8: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Building CXX object avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/OverlayAxes_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o -MF CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o.d -o CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.h:13, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.h: In constructor 'Avogadro::QtPlugins::OverlayAxes::OverlayAxes(QObject*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.h:62:12: warning: 'Avogadro::QtPlugins::OverlayAxes::m_axesAction' will be initialized after [-Wreorder] 62 | QAction* m_axesAction; | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.h:54:8: warning: 'bool Avogadro::QtPlugins::OverlayAxes::m_initialized' [-Wreorder] 54 | bool m_initialized; | ^~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:234:1: warning: when initialized here [-Wreorder] 234 | OverlayAxes::OverlayAxes(QObject* parent_) | ^~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:15, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.h:10: In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void' at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from 'std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from 'std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from 'std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from 'std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from 'std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)' at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from 'std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)' at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from 'Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from 'Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from 'Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix const&, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:145:39: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&D.462194].m_storage' is used uninitialized [-Wuninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp: In member function 'Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix const&, Eigen::Matrix const&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:145:39: note: '' declared here 145 | Array vertices(numVertices); | ^ In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void' at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from 'std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from 'std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from 'std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from 'std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from 'std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)' at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from 'std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)' at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from 'Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from 'Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from 'Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix const&, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:146:38: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&D.462196].m_storage' is used uninitialized [-Wuninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp: In member function 'Avogadro::QtPlugins::OverlayAxes::RenderImpl::addAxis(Eigen::Matrix const&, Eigen::Matrix const&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes/overlayaxes.cpp:146:38: note: '' declared here 146 | Array normals(numVertices); | ^ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Linking CXX static library ../../../lib/avogadro2/staticplugins/OverlayAxes.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -P CMakeFiles/OverlayAxes.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E cmake_link_script CMakeFiles/OverlayAxes.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/OverlayAxes.a CMakeFiles/OverlayAxes.dir/OverlayAxes_autogen/mocs_compilation.cpp.o CMakeFiles/OverlayAxes.dir/overlayaxes.cpp.o CMakeFiles/OverlayAxes.dir/OverlayAxesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/OverlayAxes.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Built target OverlayAxes make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Generating qrc_bondcentrictool.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool && /usr/lib64/qt5/bin/rcc --name bondcentrictool --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/qrc_bondcentrictool.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimextension.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimextension.cpp: In member function 'void Avogadro::QtPlugins::QTAIMExtension::triggered()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimextension.cpp:102:14: warning: 'void QTime::start()' is deprecated: Use QElapsedTimer instead [-Wdeprecated-declarations] 102 | timer.start(); | ~~~~~~~~~~~^~ In file included from /usr/include/qt5/QtCore/QTime:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimextension.cpp:27: /usr/include/qt5/QtCore/qdatetime.h:235:55: note: declared here 235 | QT_DEPRECATED_X("Use QElapsedTimer instead") void start(); | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o -MF CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp: In member function 'bool Avogadro::QtPlugins::QTAIMWavefunction::initializeWithWFNFile(const QString&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:137:52: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 137 | QStringList splitLine(line.split(" ", QString::SkipEmptyParts)); | ^~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtCore/qhashfunctions.h:44, from /usr/include/qt5/QtCore/qlist.h:47, from /usr/include/qt5/QtCore/qhash.h:46, from /usr/include/qt5/QtCore/qdebug.h:45, from /usr/include/qt5/QtCore/QDebug:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:17: /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:137:52: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 137 | QStringList splitLine(line.split(" ", QString::SkipEmptyParts)); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:137:37: warning: 'QStringList QString::split(const QString&, SplitBehavior, Qt::CaseSensitivity) const' is deprecated: Use split(const QString &sep, Qt::SplitBehavior ...) variant instead [-Wdeprecated-declarations] 137 | QStringList splitLine(line.split(" ", QString::SkipEmptyParts)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:609:17: note: declared here 609 | QStringList split(const QString &sep, SplitBehavior behavior, | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:264:52: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 264 | QStringList splitLine(line.split(" ", QString::SkipEmptyParts)); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:264:52: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 264 | QStringList splitLine(line.split(" ", QString::SkipEmptyParts)); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:264:37: warning: 'QStringList QString::split(const QString&, SplitBehavior, Qt::CaseSensitivity) const' is deprecated: Use split(const QString &sep, Qt::SplitBehavior ...) variant instead [-Wdeprecated-declarations] 264 | QStringList splitLine(line.split(" ", QString::SkipEmptyParts)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:609:17: note: declared here 609 | QStringList split(const QString &sep, SplitBehavior behavior, | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:327:60: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 327 | moCoefficientsStringList.join(" ").split(" ", QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:327:60: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 327 | moCoefficientsStringList.join(" ").split(" ", QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:605:9: note: declared here 605 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunction.cpp:327:45: warning: 'QStringList QString::split(const QString&, SplitBehavior, Qt::CaseSensitivity) const' is deprecated: Use split(const QString &sep, Qt::SplitBehavior ...) variant instead [-Wdeprecated-declarations] 327 | moCoefficientsStringList.join(" ").split(" ", QString::SkipEmptyParts); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/qt5/QtCore/qstring.h:609:17: note: declared here 609 | QStringList split(const QString &sep, SplitBehavior behavior, | ^~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o -MF CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o.d -o CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:16: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp: In member function 'bool Avogadro::QtPlugins::BondCentricTool::buildFragmentRecurse(const Avogadro::QtGui::RWBond&, const Avogadro::QtGui::RWAtom&, const Avogadro::QtGui::RWAtom&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:1190:47: warning: typedef 'BondIter' locally defined but not used [-Wunused-local-typedefs] 1190 | typedef std::vector::const_iterator BondIter; | ^~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:14: In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void' at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from 'std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from 'std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from 'std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from 'std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from 'std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)' at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from 'std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)' at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from 'Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from 'Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from 'Avogadro::QtPlugins::(anonymous namespace)::Quad::setQuad(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:128:26: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&D.467732].m_storage' is used uninitialized [-Wuninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp: In member function 'Avogadro::QtPlugins::(anonymous namespace)::Quad::setQuad(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:128:26: note: '' declared here 128 | Array verts(4); | ^ In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void' at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from 'std::__do_unimake[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' nit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from 'std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from 'std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from 'std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from 'std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)' at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from 'std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)' at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from 'Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from 'Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from 'Avogadro::QtPlugins::(anonymous namespace)::QuadOutline::setQuad(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float) [clone .constprop.0]' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:232:26: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&D.836558].m_storage' is used uninitialized [-Wuninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp: In member function 'Avogadro::QtPlugins::(anonymous namespace)::QuadOutline::setQuad(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float) [clone .constprop.0]': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:232:26: note: '' declared here 232 | Array verts(5); | ^ In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void' at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from 'std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from 'std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from 'std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from 'std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from 'std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)' at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from 'std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)' at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from 'Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from 'Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from 'Avogadro::QtPlugins::(anonymous namespace)::ArcStrip::setArc(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float, float, float) [clone .constprop.0]' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:281:33: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&D.852307].m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp: In member function 'Avogadro::QtPlugins::(anonymous namespace)::ArcStrip::setArc(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float, float, float) [clone .constprop.0]': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:281:33: note: '' declared here 281 | Array verts(numVerts); | ^ In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void' at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from 'std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from 'std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from 'std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from 'std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from 'std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)' at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from 'std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)' at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from 'Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from 'Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from 'Avogadro::QtPlugins::(anonymous namespace)::ArcSector::setArcSector(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float, float) [clone .constprop.0]' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:189:33: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&D.853265].m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp: In member function 'Avogadro::QtPlugins::(anonymous namespace)::ArcSector::setArcSector(Eigen::Matrix const&, Eigen::Matrix const&, Eigen::Matrix const&, float, float) [clone .constprop.0]': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool/bondcentrictool.cpp:189:33: note: '' declared here 189 | Array verts(numVerts); | ^ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o -MF CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o.d -o CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/qrc_bondcentrictool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimwavefunctionevaluator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Building CXX object avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentric_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o -MF CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o.d -o CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/BondCentricPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Linking CXX static library ../../../lib/avogadro2/staticplugins/BondCentric.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -P CMakeFiles/BondCentric.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -E cmake_link_script CMakeFiles/BondCentric.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/BondCentric.a CMakeFiles/BondCentric.dir/BondCentric_autogen/mocs_compilation.cpp.o CMakeFiles/BondCentric.dir/bondcentrictool.cpp.o CMakeFiles/BondCentric.dir/qrc_bondcentrictool.cpp.o CMakeFiles/BondCentric.dir/BondCentricPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/BondCentric.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Built target BondCentric make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Generating qrc_manipulator.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator && /usr/lib64/qt5/bin/rcc --name manipulator --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/qrc_manipulator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator/manipulator.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp: In member function 'Avogadro::QtPlugins::QTAIMODEIntegrator::r8_f(double, double*, double*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:267:23: warning: 'MEM[(double &)&gradient + 16]' may be used uninitialized [-Wmaybe-uninitialized] 267 | yp[2] = gradient(2) / normGradient; | ~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:196:23: note: 'MEM[(double &)&gradient + 16]' was declared here 196 | Matrix gradient; | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp: In member function 'Avogadro::QtPlugins::QTAIMODEIntegrator::integrate(QVector3D)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:151:40: warning: 'abserr' may be used uninitialized [-Wmaybe-uninitialized] 151 | flag = QTAIMODEIntegrator::r8_rkf45(NEQN, y, yp, &t, t_out, &relerr, abserr, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | flag); | ~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:53:9: note: 'abserr' was declared here 53 | qreal abserr; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:56:10: warning: 'n_step' may be used uninitialized [-Wmaybe-uninitialized] 56 | qint64 n_step; | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:145:69: warning: 't_stop' may be used uninitialized [-Wmaybe-uninitialized] 145 | ((qreal)(n_step - i_step + 1) * t_start + (qreal)(i_step - 1) * t_stop) / | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimodeintegrator.cpp:61:9: note: 't_stop' was declared here 61 | qreal t_stop; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimcriticalpointlocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/manipulator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/manipulator.cpp.o -MF CMakeFiles/Manipulator.dir/manipulator.cpp.o.d -o CMakeFiles/Manipulator.dir/manipulator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator/manipulator.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator/manipulator.cpp:13: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator/manipulator.cpp: In member function 'void Avogadro::QtPlugins::Manipulator::updatePressedButtons(QMouseEvent*, bool)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator/manipulator.cpp:237:33: warning: 'Qt::MidButton' is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 237 | } else if (e->buttons() & Qt::MidButton || | ^~~~~~~~~ In file included from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator/manipulator.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator/manipulator.cpp:6: /usr/include/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o -MF CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o.d -o CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/qrc_manipulator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Building CXX object avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/Manipulator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o -MF CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o.d -o CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/ManipulatorPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Manipulator.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator && /usr/bin/cmake -P CMakeFiles/Manipulator.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator && /usr/bin/cmake -E cmake_link_script CMakeFiles/Manipulator.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Manipulator.a CMakeFiles/Manipulator.dir/Manipulator_autogen/mocs_compilation.cpp.o CMakeFiles/Manipulator.dir/manipulator.cpp.o CMakeFiles/Manipulator.dir/qrc_manipulator.cpp.o CMakeFiles/Manipulator.dir/ManipulatorPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Manipulator.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Built target Manipulator make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Generating qrc_measuretool.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool && /usr/lib64/qt5/bin/rcc --name measuretool --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/qrc_measuretool.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool/measuretool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o -MF CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimmathutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/measuretool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/measuretool.cpp.o -MF CMakeFiles/MeasureTool.dir/measuretool.cpp.o.d -o CMakeFiles/MeasureTool.dir/measuretool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool/measuretool.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool/measuretool.cpp:13: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometrynode.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool/measuretool.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool/measuretool.cpp:11: In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'QVector >::QVector(int, Eigen::Matrix const&)' at /usr/include/qt5/QtCore/qvector.h:528:13, inlined from 'QVector >::QVector(int, Eigen::Matrix const&)' at /usr/include/qt5/QtCore/qvector.h:519:1, inlined from 'Avogadro::QtPlugins::MeasureTool::draw(Avogadro::Rendering::GroupNode&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool/measuretool.cpp:157:55: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&D.469759].m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool/measuretool.cpp: In member function 'Avogadro::QtPlugins::MeasureTool::draw(Avogadro::Rendering::GroupNode&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool/measuretool.cpp:157:54: note: '' declared here 157 | QVector positions(m_atoms.size(), Vector3()); | ^ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o -MF CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o.d -o CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/qrc_measuretool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp: In member function 'Avogadro::QtPlugins::QTAIMLSODAIntegrator::f(int, double, double*, double*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp:242:25: warning: 'MEM[(double &)&gradient + 16]' may be used uninitialized [-Wmaybe-uninitialized] 242 | ydot[3] = gradient(2) / normGradient; | ~~~~~~~~~~~~^~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimlsodaintegrator.cpp:171:23: note: 'MEM[(double &)&gradient + 16]' was declared here 171 | Matrix gradient; | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Building CXX object avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureTool_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o -MF CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o.d -o CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/MeasureToolPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Linking CXX static library ../../../lib/avogadro2/staticplugins/MeasureTool.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool && /usr/bin/cmake -P CMakeFiles/MeasureTool.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool && /usr/bin/cmake -E cmake_link_script CMakeFiles/MeasureTool.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/MeasureTool.a CMakeFiles/MeasureTool.dir/MeasureTool_autogen/mocs_compilation.cpp.o CMakeFiles/MeasureTool.dir/measuretool.cpp.o CMakeFiles/MeasureTool.dir/qrc_measuretool.cpp.o CMakeFiles/MeasureTool.dir/MeasureToolPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/MeasureTool.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Built target MeasureTool make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Generating qrc_navigator.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator && /usr/lib64/qt5/bin/rcc --name navigator --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/qrc_navigator.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator/navigator.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/Navigator_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o -MF CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimcubature.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimcubature.cpp: In function 'QList QTAIMEvaluateProperty(QList)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimcubature.cpp:1249:42: warning: 'QSet QList::toSet() const [with T = long long int]' is deprecated: Use QSet(list.begin(), list.end()) instead. [-Wdeprecated-declarations] 1249 | QSet basinSet = basinList.toSet(); | ~~~~~~~~~~~~~~~^~ In file included from /usr/include/qt5/QtCore/qdebug.h:52, from /usr/include/qt5/QtCore/QDebug:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimcubature.cpp:53: /usr/include/qt5/QtCore/qset.h:406:30: note: declared here 406 | Q_OUTOFLINE_TEMPLATE QSet QList::toSet() const | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimcubature.cpp: In function 'QList QTAIMEvaluatePropertyRTP(QList)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimcubature.cpp:1509:42: warning: 'QSet QList::toSet() const [with T = long long int]' is deprecated: Use QSet(list.begin(), list.end()) instead. [-Wdeprecated-declarations] 1509 | QSet basinSet = basinList.toSet(); | ~~~~~~~~~~~~~~~^~ /usr/include/qt5/QtCore/qset.h:406:30: note: declared here 406 | Q_OUTOFLINE_TEMPLATE QSet QList::toSet() const | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimcubature.cpp: In function 'QList QTAIMEvaluatePropertyTP(QList)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim/qtaimcubature.cpp:1853:42: warning: 'QSet QList::toSet() const [with T = long long int]' is deprecated: Use QSet(list.begin(), list.end()) instead. [-Wdeprecated-declarations] 1853 | QSet basinSet = basinList.toSet(); | ~~~~~~~~~~~~~~~^~ /usr/include/qt5/QtCore/qset.h:406:30: note: declared here 406 | Q_OUTOFLINE_TEMPLATE QSet QList::toSet() const | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/navigator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/navigator.cpp.o -MF CMakeFiles/Navigator.dir/navigator.cpp.o.d -o CMakeFiles/Navigator.dir/navigator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator/navigator.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator/navigator.cpp:10: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator/navigator.cpp: In member function 'virtual QUndoCommand* Avogadro::QtPlugins::Navigator::mousePressEvent(QMouseEvent*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator/navigator.cpp:89:33: warning: 'Qt::MidButton' is deprecated: MidButton is deprecated. Use MiddleButton instead [-Wdeprecated-declarations] 89 | } else if (e->buttons() & Qt::MidButton || | ^~~~~~~~~ In file included from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator/navigator.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator/navigator.cpp:6: /usr/include/qt5/QtCore/qnamespace.h:132:9: note: declared here 132 | MidButton Q_DECL_ENUMERATOR_DEPRECATED_X("MidButton is deprecated. Use MiddleButton instead") = MiddleButton, | ^~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/qrc_navigator.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/qrc_navigator.cpp.o -MF CMakeFiles/Navigator.dir/qrc_navigator.cpp.o.d -o CMakeFiles/Navigator.dir/qrc_navigator.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/qrc_navigator.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Building CXX object avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtension_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o -MF CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o.d -o CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/QTAIMExtensionPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Linking CXX static library ../../../lib/avogadro2/staticplugins/QTAIMExtension.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -P CMakeFiles/QTAIMExtension.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_link_script CMakeFiles/QTAIMExtension.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/QTAIMExtension.a CMakeFiles/QTAIMExtension.dir/QTAIMExtension_autogen/mocs_compilation.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimextension.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimwavefunction.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimwavefunctionevaluator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimodeintegrator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimcriticalpointlocator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimmathutilities.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimlsodaintegrator.cpp.o CMakeFiles/QTAIMExtension.dir/qtaimcubature.cpp.o CMakeFiles/QTAIMExtension.dir/QTAIMExtensionPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/QTAIMExtension.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Built target QTAIMExtension make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Generating ui_selectiontoolwidget.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/ui_selectiontoolwidget.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.ui /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.ui: Warning: The name 'label' (QLabel) is already in use, defaulting to 'label1'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Generating qrc_selectiontool.cpp cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/lib64/qt5/bin/rcc --name selectiontool --output /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/qrc_selectiontool.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.qrc make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Building CXX object avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/Navigator_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o -MF CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o.d -o CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/NavigatorPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Navigator.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator && /usr/bin/cmake -P CMakeFiles/Navigator.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator && /usr/bin/cmake -E cmake_link_script CMakeFiles/Navigator.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Navigator.a CMakeFiles/Navigator.dir/Navigator_autogen/mocs_compilation.cpp.o CMakeFiles/Navigator.dir/navigator.cpp.o CMakeFiles/Navigator.dir/qrc_navigator.cpp.o CMakeFiles/Navigator.dir/NavigatorPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Navigator.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Built target Navigator make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Generating ui_surfacedialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/ui_surfacedialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 94%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/mocs_compilation.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_surfacedialog.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/mocs_compilation.cpp:4: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/surfaces/surfacedialog.h:34:64: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 34 | SurfaceDialog(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qfuture.h:43, from /usr/include/qt5/QtCore/QFuture:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/surfaces/gaussiansetconcurrent.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/EWIEGA46WW/moc_gaussiansetconcurrent.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/mocs_compilation.cpp:2: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o -MF CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o.d -o CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/gaussiansetconcurrent.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontool.cpp.o -MF CMakeFiles/Selection.dir/selectiontool.cpp.o.d -o CMakeFiles/Selection.dir/selectiontool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.cpp:10: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.h: In constructor 'Avogadro::QtPlugins::SelectionTool::SelectionTool(QObject*)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.h:67:48: warning: 'Avogadro::QtPlugins::SelectionTool::m_doubleClick' will be initialized after [-Wreorder] 67 | bool m_drawSelectionBox, m_initSelectionBox, m_doubleClick; | ^~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.h:67:28: warning: 'bool Avogadro::QtPlugins::SelectionTool::m_initSelectionBox' [-Wreorder] 67 | bool m_drawSelectionBox, m_initSelectionBox, m_doubleClick; | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.cpp:44:1: warning: when initialized here [-Wreorder] 44 | SelectionTool::SelectionTool(QObject* parent_) | ^~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.cpp: In member function 'void Avogadro::QtPlugins::SelectionTool::applyLayer(int)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.cpp:257:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 257 | if (layer >= m_layerManager.layerCount()) { | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometrynode.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.h:13: In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void' at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from 'std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from 'std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from 'std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from 'std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from 'std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)' at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from 'std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)' at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from 'Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from 'Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from 'Avogadro::QtPlugins::SelectionTool::draw(Avogadro::Rendering::GroupNode&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.cpp:201:26: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&D.477408].m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.cpp: In member function 'Avogadro::QtPlugins::SelectionTool::draw(Avogadro::Rendering::GroupNode&)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontool.cpp:201:26: note: make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' '' declared here 201 | Array verts(4); | ^ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o -MF CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o.d -o CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/slatersetconcurrent.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o -MF CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o.d -o CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool/selectiontoolwidget.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o -MF CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o.d -o CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/qrc_selectiontool.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfacedialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfacedialog.cpp.o -MF CMakeFiles/Surfaces.dir/surfacedialog.cpp.o.d -o CMakeFiles/Surfaces.dir/surfacedialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.h:34:64: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 34 | SurfaceDialog(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qalgorithms.h:43, from /usr/include/qt5/QtCore/qlist.h:43, from /usr/include/qt5/QtCore/qstringlist.h:41, from /usr/include/qt5/QtCore/QStringList:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.h:9: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Building CXX object avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/SelectionPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/Selection_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/SelectionPlugin.cpp.o -MF CMakeFiles/Selection.dir/SelectionPlugin.cpp.o.d -o CMakeFiles/Selection.dir/SelectionPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/SelectionPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Selection.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -P CMakeFiles/Selection.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E cmake_link_script CMakeFiles/Selection.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Selection.a CMakeFiles/Selection.dir/Selection_autogen/mocs_compilation.cpp.o CMakeFiles/Selection.dir/selectiontool.cpp.o CMakeFiles/Selection.dir/selectiontoolwidget.cpp.o CMakeFiles/Selection.dir/qrc_selectiontool.cpp.o CMakeFiles/Selection.dir/SelectionPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Selection.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Built target Selection make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Generating ui_apbsoutputdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/ui_apbsoutputdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs/apbsoutputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Generating ui_apbsdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/ui_apbsdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs/apbsdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o -MF CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbs.cpp.o -MF CMakeFiles/apbs.dir/apbs.cpp.o.d -o CMakeFiles/apbs.dir/apbs.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs/apbs.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfaces.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/surfaces.cpp.o -MF CMakeFiles/Surfaces.dir/surfaces.cpp.o.d -o CMakeFiles/Surfaces.dir/surfaces.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:7: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.h:34:64: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 34 | SurfaceDialog(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:6: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:34: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:37:5: warning: when initialized here [-Wreorder] 37 | NodeInfo() : node(nullptr), ui(NONE) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h: In constructor 'Avogadro::Rendering::GroupNode::NodeInfo::NodeInfo(Avogadro::Rendering::Node*, Avogadro::Rendering::GroupNode::NodeType)': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40:11: warning: 'Avogadro::Rendering::GroupNode::NodeInfo::node' will be initialized after [-Wreorder] 40 | Node* node; | ^~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39:14: warning: 'Avogadro::Rendering::GroupNode::NodeType Avogadro::Rendering::GroupNode::NodeInfo::ui' [-Wreorder] 39 | NodeType ui; | ^~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38:5: warning: when initialized here [-Wreorder] 38 | NodeInfo(Node* n, NodeType u) : node(n), ui(u) {} | ^~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.h: In member function 'void Avogadro::QtPlugins::Surfaces::surfacesActivated()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.h:34:64: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 34 | SurfaceDialog(QWidget* parent = nullptr, Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp: In lambda function: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:226:12: warning: enumeration value 'ElectrostaticPotential' not handled in switch [-Wswitch] 226 | switch (m_dialog->surfaceType()) { | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:226:12: warning: enumeration value 'ElectronDensity' not handled in switch [-Wswitch] /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:226:12: warning: enumeration value 'MolecularOrbital' not handled in switch [-Wswitch] /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:226:12: warning: enumeration value 'SpinDensity' not handled in switch [-Wswitch] /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:226:12: warning: enumeration value 'FromFile' not handled in switch [-Wswitch] /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:226:12: warning: enumeration value 'Unknown' not handled in switch [-Wswitch] /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:255:17: warning: unused variable 'mdist' [-Wunused-variable] 255 | const float mdist = probeRadius; | ^~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp: In member function 'void Avogadro::QtPlugins::Surfaces::colorMeshByPotential()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:597:10: warning: unused variable 'maxPotential' [-Wunused-variable] 597 | double maxPotential = *std::max_element(potentials.begin(), potentials.end()); | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp: In member function 'void Avogadro::QtPlugins::Surfaces::movieFrame()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:710:41: warning: 'static QPixmap QPixmap::grabWindow(WId, int, int, int, int)' is deprecated: Use QScreen::grabWindow() instead [-Wdeprecated-declarations] 710 | QPixmap pixmap = QPixmap::grabWindow(glWidget->winId()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/qt5/QtGui/qbrush.h:52, from /usr/include/qt5/QtGui/qpalette.h:46, from /usr/include/qt5/QtWidgets/qwidget.h:48, from /usr/include/qt5/QtWidgets/qdialog.h:44, from /usr/include/qt5/QtWidgets/QDialog:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfacedialog.h:10: /usr/include/qt5/QtGui/qpixmap.h:118:20: note: declared here 118 | static QPixmap grabWindow(WId, int x = 0, int y = 0, int w = -1, int h = -1); | ^~~~~~~~~~ In file included from /usr/include/eigen3/Eigen/Core:294, from /usr/include/eigen3/Eigen/Dense:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.h:12, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:21: In member function 'Eigen::PlainObjectBase >::PlainObjectBase(Eigen::PlainObjectBase > const&)', inlined from 'Eigen::Matrix::Matrix(Eigen::Matrix const&)' at /usr/include/eigen3/Eigen/src/Core/Matrix.h:414:65, inlined from 'std::_Construct, Eigen::Matrix const&>(Eigen::Matrix*, Eigen::Matrix const&)void' at /usr/include/c++/13/bits/stl_construct.h:119:7, inlined from 'std::__do_uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:267:21, inlined from 'std::__uninitialized_fill_n::__uninit_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:284:34, inlined from 'std::uninitialized_fill_n*, unsigned long, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:327:17, inlined from 'std::__uninitialized_fill_n_a*, unsigned long, Eigen::Matrix, Eigen::Matrix >(Eigen::Matrix*, unsigned long, Eigen::Matrix const&, std::allocator >&)Eigen::Matrix*' at /usr/include/c++/13/bits/stl_uninitialized.h:472:39, inlined from 'std::vector, std::allocator > >::_M_fill_initialize(unsigned long, Eigen::Matrix const&)' at /usr/include/c++/13/bits/stl_vector.h:1704:33, inlined from 'std::vector, std::allocator > >::vector(unsigned long, Eigen::Matrix const&, std::allocator > const&)' at /usr/include/c++/13/bits/stl_vector.h:569:27, inlined from 'Avogadro::Core::internal::ArrayRefContainer >::ArrayRefContainer(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:46:17, inlined from 'Avogadro::Core::Array >::Array(unsigned long, Eigen::Matrix const&)' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:120:9, inlined from 'Avogadro::QtPlugins::Surfaces::colorMeshByPotential()' at /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:590:51: /usr/include/eigen3/Eigen/src/Core/PlainObjectBase.h:512:17: warning: 'MEM[(const struct PlainObjectBase &)&D.503114].m_storage' may be used uninitialized [-Wmaybe-uninitialized] 512 | : Base(), m_storage(other.m_storage) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp: In member function 'Avogadro::QtPlugins::Surfaces::colorMeshByPotential()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces/surfaces.cpp:590:51: note: '' declared here 590 | Core::Array positions(positionsf.size()); | ^ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/g++ -DQT_CONCURRENT_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/Surfaces_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/gif-h -isystem /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/tinycolormap/include -isystem /usr/include/qt5/QtConcurrent -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o -MF CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o.d -o CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/SurfacesPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Surfaces.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/cmake -P CMakeFiles/Surfaces.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/Surfaces.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Surfaces.a CMakeFiles/Surfaces.dir/Surfaces_autogen/mocs_compilation.cpp.o CMakeFiles/Surfaces.dir/gaussiansetconcurrent.cpp.o CMakeFiles/Surfaces.dir/slatersetconcurrent.cpp.o CMakeFiles/Surfaces.dir/surfacedialog.cpp.o CMakeFiles/Surfaces.dir/surfaces.cpp.o CMakeFiles/Surfaces.dir/SurfacesPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Surfaces.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Built target Surfaces make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Generating ui_cp2kinputdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/ui_cp2kinputdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsdialog.cpp.o -MF CMakeFiles/apbs.dir/apbsdialog.cpp.o.d -o CMakeFiles/apbs.dir/apbsdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs/apbsdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/mocs_compilation.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinputdialog.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/mocs_compilation.cpp:3: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/cp2kinput/cp2kinputdialog.h:35:76: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 35 | explicit Cp2kInputDialog(QWidget* parent_ = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/cp2kinput/cp2kinput.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/EWIEGA46WW/moc_cp2kinput.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/mocs_compilation.cpp:2: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o -MF CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o.d -o CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs/apbsoutputdialog.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/opendxreader.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/opendxreader.cpp.o -MF CMakeFiles/apbs.dir/opendxreader.cpp.o.d -o CMakeFiles/apbs.dir/opendxreader.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs/opendxreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbs_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/apbsPlugin.cpp.o -MF CMakeFiles/apbs.dir/apbsPlugin.cpp.o.d -o CMakeFiles/apbs.dir/apbsPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/apbsPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Linking CXX static library ../../../lib/avogadro2/staticplugins/apbs.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/cmake -P CMakeFiles/apbs.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/cmake -E cmake_link_script CMakeFiles/apbs.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/apbs.a CMakeFiles/apbs.dir/apbs_autogen/mocs_compilation.cpp.o CMakeFiles/apbs.dir/apbs.cpp.o CMakeFiles/apbs.dir/apbsdialog.cpp.o CMakeFiles/apbs.dir/apbsoutputdialog.cpp.o CMakeFiles/apbs.dir/opendxreader.cpp.o CMakeFiles/apbs.dir/apbsPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/apbs.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Built target apbs make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Generating ui_gamessinputdialog.h cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/lib64/qt5/bin/uic -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/ui_gamessinputdialog.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.ui make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o -MF CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o.d -o CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h:35:76: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 35 | explicit Cp2kInputDialog(QWidget* parent_ = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/qt5/QtWidgets/qbuttongroup.h:43, from /usr/include/qt5/QtWidgets/QButtonGroup:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h:9: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/mocs_compilation.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamessinputdialog.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/mocs_compilation.cpp:4: /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/gamessinput/gamessinputdialog.h:35:78: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 35 | explicit GamessInputDialog(QWidget* parent_ = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtGui/qsyntaxhighlighter.h:43, from /usr/include/qt5/QtGui/QSyntaxHighlighter:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/../../../../../../avogadro/qtplugins/gamessinput/gamesshighlighter.h:20, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/EWIEGA46WW/moc_gamesshighlighter.cpp:10, from /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/mocs_compilation.cpp:2: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o -MF CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o.d -o CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinput.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinput.cpp:8: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h:35:76: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 35 | explicit Cp2kInputDialog(QWidget* parent_ = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinput.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinput.cpp:6: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h: In member function 'void Avogadro::QtPlugins::Cp2kInput::menuActivated()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.h:35:76: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 35 | explicit Cp2kInputDialog(QWidget* parent_ = nullptr, Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o -MF CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o.d -o CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/Cp2kInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 98%] Linking CXX static library ../../../lib/avogadro2/staticplugins/Cp2kInput.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -P CMakeFiles/Cp2kInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/Cp2kInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/Cp2kInput.a CMakeFiles/Cp2kInput.dir/Cp2kInput_autogen/mocs_compilation.cpp.o CMakeFiles/Cp2kInput.dir/cp2kinputdialog.cpp.o CMakeFiles/Cp2kInput.dir/cp2kinput.cpp.o CMakeFiles/Cp2kInput.dir/Cp2kInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/Cp2kInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 98%] Built target Cp2kInput make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o -MF CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o.d -o CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.h:35:78: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 35 | explicit GamessInputDialog(QWidget* parent_ = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtGui/qtguiglobal.h:43, from /usr/include/qt5/QtWidgets/qtwidgetsglobal.h:43, from /usr/include/qt5/QtWidgets/qbuttongroup.h:43, from /usr/include/qt5/QtWidgets/QButtonGroup:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.h:9: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 98%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o -MF CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o.d -o CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamesshighlighter.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o -MF CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o.d -o CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Building CXX object avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o -MF CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 98%] Building CXX object avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamessinput.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/GamessInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/gamessinput.cpp.o -MF CMakeFiles/GamessInput.dir/gamessinput.cpp.o.d -o CMakeFiles/GamessInput.dir/gamessinput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinput.cpp In file included from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinput.cpp:8: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.h:35:78: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 35 | explicit GamessInputDialog(QWidget* parent_ = nullptr, Qt::WindowFlags f = 0); | ^ In file included from /usr/include/qt5/QtCore/qglobal.h:1305, from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinput.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinput.cpp:6: /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.h: In member function 'void Avogadro::QtPlugins::GamessInput::menuActivated()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.h:35:78: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::WindowType; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 35 | explicit GamessInputDialog(QWidget* parent_ = nullptr, Qt::WindowFlags f = 0); | ^ /usr/include/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Linking CXX static library ../../../lib/avogadro2/staticplugins/GamessInput.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -P CMakeFiles/GamessInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E cmake_link_script CMakeFiles/GamessInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/GamessInput.a CMakeFiles/GamessInput.dir/GamessInput_autogen/mocs_compilation.cpp.o CMakeFiles/GamessInput.dir/gamessinputdialog.cpp.o CMakeFiles/GamessInput.dir/gamesshighlighter.cpp.o CMakeFiles/GamessInput.dir/gamessinput.cpp.o CMakeFiles/GamessInput.dir/GamessInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/GamessInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Built target GamessInput make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Building CXX object avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o -MF CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o.d -o CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInputPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Building CXX object avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/quantuminput.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput && /usr/bin/g++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/QuantumInput_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -isystem /usr/include/qt5/QtNetwork -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -MD -MT avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/quantuminput.cpp.o -MF CMakeFiles/QuantumInput.dir/quantuminput.cpp.o.d -o CMakeFiles/QuantumInput.dir/quantuminput.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput/quantuminput.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' In file included from /usr/include/qt5/QtCore/qnamespace.h:43, from /usr/include/qt5/QtCore/qobjectdefs.h:48, from /usr/include/qt5/QtCore/qobject.h:46, from /usr/include/qt5/QtCore/QObject:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginfactory.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:11, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput/quantuminput.h:9, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput/quantuminput.cpp:6: /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput/quantuminput.cpp: In member function 'void Avogadro::QtPlugins::QuantumInput::updateActions()': /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput/quantuminput.cpp:211:74: warning: 'QList QMap::uniqueKeys() const [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 211 | foreach (const QString& programName, m_inputGeneratorScripts.uniqueKeys()) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/qt5/QtCore/QMap:1, from /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput/quantuminput.h:11: /usr/include/qt5/QtCore/qmap.h:1354:12: note: declared here 1354 | QList QMap::uniqueKeys() const | ^~~~~~~~~~~~ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput/quantuminput.cpp:212:57: warning: 'QList QMap::values(const Key&) const [with Key = QString; T = QString]' is deprecated: Use QMultiMap for maps storing multiple values with the same key. [-Wdeprecated-declarations] 212 | QStringList scripts = m_inputGeneratorScripts.values(programName); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /usr/include/qt5/QtCore/qmap.h:1360:10: note: declared here 1360 | QList QMap::values(const Key &key) const | ^~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Linking CXX static library ../../../lib/avogadro2/staticplugins/QuantumInput.a cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput && /usr/bin/cmake -P CMakeFiles/QuantumInput.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/QuantumInput.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/avogadro2/staticplugins/QuantumInput.a CMakeFiles/QuantumInput.dir/QuantumInput_autogen/mocs_compilation.cpp.o CMakeFiles/QuantumInput.dir/quantuminput.cpp.o CMakeFiles/QuantumInput.dir/QuantumInputPlugin.cpp.o /usr/bin/ranlib ../../../lib/avogadro2/staticplugins/QuantumInput.a make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Built target QuantumInput make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Automatic MOC for target AvogadroQtPlugins cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/AutogenInfo.json Release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/g++ -std=c++17 -dM -E -c /usr/share/cmake/Modules/CMakeCXXCompilerABI.cpp -DAvogadroQtPlugins_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include AutoGen: Parsing "SRC:/avogadro/qtplugins/pluginfactory.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/pluginmanager.h" AutoGen: Parsing "SRC:/build/avogadro/qtplugins/avogadrostaticqtplugins.h" AutoGen: Parsing "SRC:/avogadro/qtplugins/pluginmanager.cpp" AutoMoc: Generating "SRC:/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/EWIEGA46WW/moc_pluginmanager.cpp", because it doesn't exist, from "SRC:/avogadro/qtplugins/pluginmanager.h" /usr/lib64/qt5/bin/moc -DAvogadroQtPlugins_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins -I/usr/include/eigen3 -I/usr/include/qt5 -I/usr/include/qt5/QtWidgets -I/usr/include/qt5/QtGui -I/usr/include/qt5/QtCore -I/usr/lib64/qt5/mkspecs/linux-g++ -I/usr/include/c++/13 -I/usr/include/c++/13/x86_64-redhat-linux -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-redhat-linux/13/include -I/usr/local/include -I/usr/include --include /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/moc_predefs.h --output-dep-file -o /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/EWIEGA46WW/moc_pluginmanager.cpp /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginmanager.h AutoMoc: Reading dependencies from "SRC:/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/EWIEGA46WW/moc_pluginmanager.cpp.d" AutoMoc: Generating MOC compilation "SRC:/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/mocs_compilation.cpp" AutoGen: Writing the parse cache file "SRC:/build/avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/build/avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/AutogenUsed.txt" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Built target AvogadroQtPlugins_autogen make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [100%] Building CXX object avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/AvogadroQtPlugins_autogen/mocs_compilation.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins && /usr/bin/g++ -DAvogadroQtPlugins_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/AvogadroQtPlugins_autogen/mocs_compilation.cpp.o -MF CMakeFiles/AvogadroQtPlugins.dir/AvogadroQtPlugins_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/AvogadroQtPlugins.dir/AvogadroQtPlugins_autogen/mocs_compilation.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/mocs_compilation.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [100%] Building CXX object avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/pluginmanager.cpp.o cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins && /usr/bin/g++ -DAvogadroQtPlugins_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/AvogadroQtPlugins_autogen/include -I/builddir/build/BUILD/avogadrolibs-1.97.0/build -I/builddir/build/BUILD/avogadrolibs-1.97.0 -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue -I/builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins -isystem /usr/include/eigen3 -isystem /usr/include/qt5 -isystem /usr/include/qt5/QtWidgets -isystem /usr/include/qt5/QtGui -isystem /usr/include/qt5/QtCore -isystem /usr/lib64/qt5/mkspecs/linux-g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -MD -MT avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/pluginmanager.cpp.o -MF CMakeFiles/AvogadroQtPlugins.dir/pluginmanager.cpp.o.d -o CMakeFiles/AvogadroQtPlugins.dir/pluginmanager.cpp.o -c /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/pluginmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [100%] Linking CXX shared library ../../lib/libAvogadroQtPlugins.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins && /usr/bin/cmake -E cmake_link_script CMakeFiles/AvogadroQtPlugins.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DH5_USE_110_API -O2 -DNDEBUG -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libAvogadroQtPlugins.so.1 -o ../../lib/libAvogadroQtPlugins.so.1.97.0 CMakeFiles/AvogadroQtPlugins.dir/AvogadroQtPlugins_autogen/mocs_compilation.cpp.o CMakeFiles/AvogadroQtPlugins.dir/pluginmanager.cpp.o -Wl,-rpath,/builddir/build/BUILD/avogadrolibs-1.97.0/build/lib: ../../lib/avogadro2/staticplugins/ThreeDMol.a ../../lib/avogadro2/staticplugins/ApplyColors.a ../../lib/avogadro2/staticplugins/BondCentric.a ../../lib/avogadro2/staticplugins/Bonding.a ../../lib/avogadro2/staticplugins/Cartoons.a ../../lib/avogadro2/staticplugins/CoordinateEditor.a ../../lib/avogadro2/staticplugins/CopyPaste.a ../../lib/avogadro2/staticplugins/Crystal.a ../../lib/avogadro2/staticplugins/CrystalScene.a ../../lib/avogadro2/staticplugins/CustomElements.a ../../lib/avogadro2/staticplugins/Editor.a ../../lib/avogadro2/staticplugins/FetchPDB.a ../../lib/avogadro2/staticplugins/Focus.a ../../lib/avogadro2/staticplugins/Hydrogens.a ../../lib/avogadro2/staticplugins/ImportPQR.a ../../lib/avogadro2/staticplugins/NucleicInput.a ../../lib/avogadro2/staticplugins/InsertFragment.a ../../lib/avogadro2/staticplugins/Label.a ../../lib/avogadro2/staticplugins/LabelEditor.a ../../lib/avogadro2/staticplugins/LammpsInput.a ../../lib/avogadro2/staticplugins/LineFormatInput.a ../../lib/avogadro2/staticplugins/Manipulator.a ../../lib/avogadro2/staticplugins/MeasureTool.a ../../lib/avogadro2/staticplugins/MolecularProperties.a ../../lib/avogadro2/staticplugins/MongoChem.a ../../lib/avogadro2/staticplugins/Navigator.a ../../lib/avogadro2/staticplugins/NetworkDatabases.a ../../lib/avogadro2/staticplugins/OpenBabel.a ../../lib/avogadro2/staticplugins/OpenMMInput.a ../../lib/avogadro2/staticplugins/PlayerTool.a ../../lib/avogadro2/staticplugins/PropertyTables.a ../../lib/avogadro2/staticplugins/POVRay.a ../../lib/avogadro2/staticplugins/ResetView.a ../../lib/avogadro2/staticplugins/Select.a ../../lib/avogadro2/staticplugins/Selection.a ../../lib/avogadro2/staticplugins/SpaceGroup.a ../../lib/avogadro2/staticplugins/Surfaces.a ../../lib/avogadro2/staticplugins/SVG.a ../../lib/avogadro2/staticplugins/Spectra.a ../../lib/avogadro2/staticplugins/VRML.a ../../lib/avogadro2/staticplugins/apbs.a ../../lib/avogadro2/staticplugins/Cp2kInput.a ../../lib/avogadro2/staticplugins/GamessInput.a ../../lib/avogadro2/staticplugins/commands.a ../../lib/avogadro2/staticplugins/QuantumInput.a ../../lib/avogadro2/staticplugins/ScriptFileFormats.a ../../lib/avogadro2/staticplugins/ScriptCharges.a ../../lib/avogadro2/staticplugins/PluginDownloader.a ../../lib/avogadro2/staticplugins/BallStick.a ../../lib/avogadro2/staticplugins/CloseContacts.a ../../lib/avogadro2/staticplugins/Force.a ../../lib/avogadro2/staticplugins/Licorice.a ../../lib/avogadro2/staticplugins/Meshes.a ../../lib/avogadro2/staticplugins/NonCovalent.a ../../lib/avogadro2/staticplugins/VanDerWaals.a ../../lib/avogadro2/staticplugins/VanDerWaalsAO.a ../../lib/avogadro2/staticplugins/Wireframe.a ../../lib/avogadro2/staticplugins/OverlayAxes.a ../../lib/avogadro2/staticplugins/QTAIMExtension.a ../../lib/avogadro2/staticplugins/QTAIMScenePlugin.a ../../lib/libAvogadroQtOpenGL.so.1.97.0 /usr/lib64/libQt5Widgets.so.5.15.10 /usr/lib64/libQt5Gui.so.5.15.10 /usr/lib64/libQt5Core.so.5.15.10 ../../thirdparty/libgwavi/libgwavi.a /usr/lib64/libQt5Svg.so.5.15.10 /usr/lib64/libQt5Widgets.so.5.15.10 /usr/lib64/libQt5Gui.so.5.15.10 ../../lib/libAvogadroMoleQueue.so.1.97.0 /usr/lib64/libQt5Widgets.so.5.15.10 /usr/lib64/libQt5Gui.so.5.15.10 /usr/lib64/libQt5Network.so.5.15.10 /usr/lib64/libQt5Core.so.5.15.10 ../../lib/libAvogadroQuantumIO.so.1.97.0 ../../lib/libAvogadroCalc.so.1.97.0 /usr/lib64/libQt5Network.so.5.15.10 /usr/lib64/libarchive.so /usr/lib64/libQt5Concurrent.so.5.15.10 /usr/lib64/libQt5Core.so.5.15.10 ../../lib/libAvogadroQtGui.so.1.97.0 ../../lib/libAvogadroIO.so.1.97.0 /usr/lib64/libQt5Widgets.so.5.15.10 /usr/lib64/libQt5Gui.so.5.15.10 /usr/lib64/libQt5Core.so.5.15.10 ../../lib/libAvogadroCore.so.1.97.0 ../../lib/libAvogadroRendering.so.1.97.0 /usr/lib64/libGLEW.so /usr/lib64/libGL.so /usr/lib64/libGLU.so cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins && /usr/bin/cmake -E cmake_symlink_library ../../lib/libAvogadroQtPlugins.so.1.97.0 ../../lib/libAvogadroQtPlugins.so.1 ../../lib/libAvogadroQtPlugins.so make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:61:6: warning: type 'Avogadro::QtPlugins::BasisOption' violates the C++ One Definition Rule [-Wodr] 61 | enum BasisOption | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:59:6: note: an enum with different value name is defined in another translation unit 59 | enum BasisOption | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:63:3: note: name 'BasisSZVGTH' differs from name 'BasisSTO3G' defined in another translation unit 63 | BasisSZVGTH = 0, | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:61:3: note: mismatching definition 61 | BasisSTO3G = 0, | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:40:6: warning: type 'Avogadro::QtPlugins::CalculateOption' violates the C++ One Definition Rule [-Wodr] 40 | enum CalculateOption | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:37:6: note: an enum with different value name is defined in another translation unit 37 | enum CalculateOption | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput/cp2kinputdialog.cpp:42:3: note: name 'CalculateEnergy' differs from name 'CalculateSinglePoint' defined in another translation unit 42 | CalculateEnergy = 0, | ^ /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput/gamessinputdialog.cpp:39:3: note: mismatching definition 39 | CalculateSinglePoint = 0, | ^ make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [100%] Built target AvogadroQtPlugins make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadrolibs-1.97.0/build/CMakeFiles 0 make: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' + pushd build/docs ~/build/BUILD/avogadrolibs-1.97.0/build/docs ~/build/BUILD/avogadrolibs-1.97.0 + doxygen warning: Tag 'OUTPUT_TEXT_DIRECTION' at line 102 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_TIMESTAMP' at line 1244 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 1549 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1862 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_TIMESTAMP' at line 1878 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'RTF_SOURCE_CODE' at line 1952 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOCBOOK_PROGRAMLISTING' at line 2057 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 2266 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 2308 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 2315 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 2561 of file 'doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. warning: source 'images' is not a readable file or directory... skipping. Doxygen version used: 1.9.7 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/icons Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/icons/fallback Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/icons/fallback/64x64 Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/icons/fallback/32x32 Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/icons/colormap Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/docs Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/docs/scripts Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/docs/install Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/docs/contrib Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/docs/api Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/docs/api/class Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/docs/_templates Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/docs/_images Searching for files in directory /builddir/build/BUILD/avogadrolibs-1.97.0/docs/_images/400px Reading and parsing tag files Parsing files Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemodel.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemodel.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angletools.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angletools.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/a/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:177: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:188: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h:38: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h:42: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h:83: warning: unbalanced grouping commands tom.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper-inline.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper-inline.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomutilities.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomutilities.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/avogadrocore.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/avogadrocore.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/avospglib.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/avospglib.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/basisset.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/basisset.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/color3f.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/color3f.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elementdata.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elementdata.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elements.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elements.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussiansettools.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussiansettools.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/graph.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layer.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layer.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mdlvalence_p.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mdlvalence_p.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mesh.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/a/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:88: warning: unbalanced grouping commands vogadro/core/molecule.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mutex.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/mutex.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/nameatomtyper.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/nameatomtyper.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/neighborperceiver.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/neighborperceiver.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuecolors.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuecolors.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/sharedmutex.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/sharedmutex.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slatersettools.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slatersettools.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroups.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroups.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/symbolatomtyper.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/symbolatomtyper.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/utilities.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/utilities.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variantmap.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variantmap.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/cjsonformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/cjsonformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/cmlformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/cmlformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/dcdformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/dcdformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/gromacsformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/gromacsformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/mdlformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/mdlformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/mmtfformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/mmtfformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/pdbformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/pdbformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/trrformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/trrformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/turbomoleformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/vaspformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/vaspformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/xyzformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/xyzformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/batchjob.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/batchjob.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jobobject.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jobobject.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jsonrpcclient.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jsonrpcclient.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgenerator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgenerator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratordialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratordialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratorwidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuedialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuedialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuemanager.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuemanager.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/a/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuewidget.h:128: warning: unbalanced grouping commands vogadro/molequeue/molequeuewidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuewidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/matrixserialization.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/matrixserialization.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/moleculedeserializer.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/moleculedeserializer.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/moleculeserializer.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/moleculeserializer.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/utils.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/utils.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/backgroundfileformat.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/backgroundfileformat.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/customelementdialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/customelementdialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementdetail_p.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementdetail_p.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementitem_p.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementitem_p.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementtranslator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementtranslator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/hydrogentools.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/hydrogentools.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacescript.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacescript.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacewidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictablescene_p.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictablescene_p.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictableview.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictableview.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/persistentatom.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/persistentatom.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/persistentbond.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/persistentbond.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pluginlayermanager.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pluginlayermanager.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule_undo.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule_undo.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scriptloader.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scriptloader.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/utilities.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/utilities.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/viewfactory.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/viewfactory.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/activeobjects.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/activeobjects.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/qttextrenderstrategy.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/qttextrenderstrategy.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessus.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessus.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussiancube.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussiancube.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussianfchk.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussianfchk.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/molden.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/molden.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/mopacaux.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/mopacaux.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemjson.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemlog.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemlog.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/avogadrogl.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/avogadrogl.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/avogadrorendering.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/avogadrorendering.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/beziergeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/beziergeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/camera.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/camera.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometrynode.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometrynode.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h... Preprocessing /builddir/buil/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:77: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:84: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:91: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:103: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:110: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:117: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:124: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:131: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:138: warning: unbalanced grouping commands /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.h:116: warning: unbalanced grouping commands d/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabel2d.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabel2d.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabel3d.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabel3d.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textrenderstrategy.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textrenderstrategy.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/transformnode.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/transformnode.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/volumegeometry.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/volumegeometry.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkAvogadroActor.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkAvogadroActor.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkglwidget.h... /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.h:21: warning: Compound Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:59: warning: Compound Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:48: warning: Compound Avogadro::Core::ArraySet::PlaceHolder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:47: warning: Compound Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomutilities.h:19: warning: Compound Avogadro::Core::AtomUtilities is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:23: warning: Compound Avogadro::Core::BondTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.h:21: warning: Compound Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:86: warning: Compound Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:11: warning: Compound Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.h:19: warning: Compound Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.h:34: warning: Compound Avogadro::Core::SecondaryStructureAssigner is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.h:20: warning: Compound Avogadro::Core::hBondRecord is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:22: warning: Compound Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.h:32: warning: Compound Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/lammpsformat.h:57: warning: Compound Avogadro::Io::LammpsDataFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/vaspformat.h:51: warning: Compound Avogadro::Io::OutcarFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementdetail_p.h:24: warning: Compound Avogadro::QtGui::ElementDetail is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/elementitem_p.h:24: warning: Compound Avogadro::QtGui::ElementItem is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:20: warning: Compound Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/hydrogentools.h:21: warning: Compound Avogadro::QtGui::HydrogenTools is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:19: warning: Compound Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/periodictablescene_p.h:25: warning: Compound Avogadro::QtGui::PeriodicTableScene is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:670: warning: Compound Avogadro::QtGui::RWAtom is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:677: warning: Compound Avogadro::QtGui::RWBond is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule_undo.h:26: warning: Compound Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h:37: warning: Compound Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessus.h:18: warning: Compound Avogadro::QuantumIO::GAMESSUSOutput is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:77: warning: Compound Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussiancube.h:17: warning: Compound Avogadro::QuantumIO::GaussianCube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussianfchk.h:18: warning: Compound Avogadro::QuantumIO::GaussianFchk is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/molden.h:18: warning: Compound Avogadro::QuantumIO::MoldenFile is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/mopacaux.h:18: warning: Compound Avogadro::QuantumIO::MopacAux is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemlog.h:19: warning: Compound Avogadro::QuantumIO::NWChemLog is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h:14: warning: Compound Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/beziergeometry.h:14: warning: Compound Avogadro::Rendering::BezierGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:25: warning: Compound Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:65: warning: Compound Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:112: warning: Compound Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:16: warning: Compound Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:25: warning: Compound Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/camera.h:26: warning: Compound Avogadro::Rendering::EigenData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:35: warning: Compound Avogadro::Rendering::GroupNode::NodeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:38: warning: Compound Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:25: warning: Compound Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:25: warning: Compound Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:28: warning: Compound Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:42: warning: Compound Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:21: warning: Compound Avogadro::Rendering::ShaderInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:92: warning: Compound Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h:17: warning: Compound Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:28: warning: Compound Avogadro::TypeTraits is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:39: warning: Compound Avogadro::TypeTraits< char > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:116: warning: Compound Avogadro::TypeTraits< double > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:105: warning: Compound Avogadro::TypeTraits< float > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:83: warning: Compound Avogadro::TypeTraits< int > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:61: warning: Compound Avogadro::TypeTraits< short > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:50: warning: Compound Avogadro::TypeTraits< unsigned char > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:94: warning: Compound Avogadro::TypeTraits< unsigned int > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:72: warning: Compound Avogadro::TypeTraits< unsigned short > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkglwidget.h:42: warning: Compound Avogadro::VTK::vtkGLWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:217: warning: no matching class member found for template < Molecule_T > BondTemplate< Molecule_T >::AtomType getOtherAtom(Avogadro::Core::BondTemplate< Molecule_T >::Molecule_T::AtomType atom) const Possible candidates: 'AtomType BondTemplate< Molecule_T >::getOtherAtom(Index index) const' at line 99 of file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h 'AtomType BondTemplate< Molecule_T >::getOtherAtom(AtomType atom) const' at line 104 of file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:233: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:244: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:257: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkAvogadroActor.h:35: warning: Member override (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkAvogadroActor.h:62: warning: Member m_scene (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkAvogadroActor.h:63: warning: Member m_bounds[6] (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkAvogadroActor.h:65: warning: Member m_initialized (variable) of class vtkAvogadroActor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:16: warning: Member Matrix3 (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:17: warning: Member Matrix4 (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:18: warning: Member MatrixX (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:20: warning: Member Matrix2f (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:21: warning: Member Matrix3f (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:22: warning: Member Matrix4f (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/matrix.h:23: warning: Member MatrixXf (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:16: warning: Member Vector3 (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:17: warning: Member Vector4 (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:19: warning: Member Vector2f (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:20: warning: Member Vector3f (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:21: warning: Member Vector4f (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:22: warning: Member Vector2i (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:23: warning: Member Vector3i (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:24: warning: Member Vector4i (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:25: warning: Member Vector2ub (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:26: warning: Member Vector3ub (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:27: warning: Member Vector4ub (typedef) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angletools.h:15: warning: Member bondAngle(const Vector3 &b0, const Vector3 &b1) (function) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angletools.h:26: warning: Member dihedralAngle(const Vector3 &b0, const Vector3 &b1, const Vector3 &b2) (function) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angletools.h:39: warning: Member calcAngle(const Vector3 &v1, const Vector3 &v2, const Vector3 &v3) (function) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angletools.h:45: warning: Member calcDihedral(const Vector3 &v1, const Vector3 &v2, const Vector3 &v3, const Vector3 &v4) (function) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/avogadrocore.h:39: warning: Member MaxIndex (variable) of namespace Avogadro is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:32: warning: Member points[8] (variable) of struct Avogadro::Frustrum is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/vector.h:33: warning: Member planes[4] (variable) of struct Avogadro::Frustrum is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:35: warning: Member name() (function) of class Avogadro::TypeTraits is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:46: warning: Member name() (function) of class Avogadro::TypeTraits< char > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:123: warning: Member name() (function) of class Avogadro::TypeTraits< double > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:112: warning: Member name() (function) of class Avogadro::TypeTraits< float > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:90: warning: Member name() (function) of class Avogadro::TypeTraits< int > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:68: warning: Member name() (function) of class Avogadro::TypeTraits< short > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:57: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned char > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:101: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned int > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/types.h:79: warning: Member name() (function) of class Avogadro::TypeTraits< unsigned short > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.h:107: warning: Member nameForModel(const std::string &identifier) const (function) of class Avogadro::Calc::ChargeManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.h:56: warning: argument 'format' of command @param is not found in the argument list of ChargeManager::registerModel(ChargeModel *model) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.h:56: warning: The following parameter of Avogadro::Calc::ChargeManager::registerModel(ChargeModel *model) is not documented: parameter 'model' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemodel.h:83: warning: Member partialCharges(Core::Molecule &mol) const =0 (function) of class Avogadro::Calc::ChargeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemodel.h:96: warning: argument 'array' of command @param is not found in the argument list of ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemodel.h:96: warning: The following parameter of Avogadro::Calc::ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const is not documented: parameter 'points' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.h:35: warning: Member DefaultModel(const std::string &identifier="") (function) of class Avogadro::Calc::DefaultModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemodel.h:83: warning: Member partialCharges(Core::Molecule &mol) const =0 (function) of class Avogadro::Calc::ChargeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.h:80: warning: Member m_identifier (variable) of class Avogadro::Calc::DefaultModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/defaultmodel.h:81: warning: Member m_elements (variable) of class Avogadro::Calc::DefaultModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.h:19: warning: Member Angle (typedef) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.h:19: warning: Member Dihedral (typedef) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:15: warning: Member AtomHybridization (enumeration) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:32: warning: Member AtomicNumber (enumeration) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:381: warning: Member operator==(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:388: warning: Member operator!=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:394: warning: Member operator<(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:401: warning: Member operator>(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:407: warning: Member operator<=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:413: warning: Member operator>=(const Array< T > &lhs, const Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:419: warning: Member swap(Array< T > &lhs, Array< T > &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/avogadrocore.h:64: warning: Member isCustomElement(unsigned char atomicNumber) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:59: warning: Member ALAData("ALA", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HB3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CB", "HB3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:88: warning: Member CYSData("CYS", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "SG", 16 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG", 1 }, { "HG", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "SG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "SG", "HG" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:119: warning: Member ASPData("ASP", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "OD1", 8 }, { "OD2", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD2", 1 }, { "HD2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "OD2" }, { "OD2", "HD2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "OD1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:153: warning: Member GLUData("GLU", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OE1", 8 }, { "OE2", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE2", 1 }, { "HE2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "OE2" }, { "OE2", "HE2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CD", "OE1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:193: warning: Member PHEData("PHE", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "CE1", 6 }, { "CE2", 6 }, { "CZ", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HZ", 1 }, { "HZ", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "CE1" }, { "CD1", "HD1" }, { "CD2", "HD2" }, { "CE1", "HE1" }, { "CE2", "CZ" }, { "CE2", "HE2" }, { "CZ", "HZ" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE1", "CZ" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:223: warning: Member GLYData("GLY", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA2", 1 }, { "HA3", 1 }, { "HA3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "HA2" }, { "CA", "HA3" }, { "C", "OXT" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:246: warning: Member HISData("HIS", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "ND1", 7 }, { "CD2", 6 }, { "CE1", 6 }, { "NE2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "ND1" }, { "ND1", "HD1" }, { "CD2", "NE2" }, { "CD2", "HD2" }, { "CE1", "NE2" }, { "CE1", "HE1" }, { "NE2", "HE2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD2" }, { "ND1", "CE1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:275: warning: Member ILEData("ILE", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG1", 6 }, { "CG2", 6 }, { "CD1", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG12", 1 }, { "HG13", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HD11", 1 }, { "HD12", 1 }, { "HD13", 1 }, { "HD13", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG1" }, { "CB", "CG2" }, { "CB", "HB" }, { "CG1", "CD1" }, { "CG1", "HG12" }, { "CG1", "HG13" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "CD1", "HD11" }, { "CD1", "HD12" }, { "CD1", "HD13" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:291: warning: Member LYSData("LYS", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "CE", 6 }, { "NZ", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "HZ1", 1 }, { "HZ2", 1 }, { "HZ3", 1 }, { "HZ3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "CE" }, { "CD", "HD2" }, { "CD", "HD3" }, { "CE", "NZ" }, { "CE", "HE2" }, { "CE", "HE3" }, { "NZ", "HZ1" }, { "NZ", "HZ2" }, { "NZ", "HZ3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:308: warning: Member LEUData("LEU", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG", 1 }, { "HD11", 1 }, { "HD12", 1 }, { "HD13", 1 }, { "HD21", 1 }, { "HD22", 1 }, { "HD23", 1 }, { "HD23", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD1" }, { "CG", "CD2" }, { "CG", "HG" }, { "CD1", "HD11" }, { "CD1", "HD12" }, { "CD1", "HD13" }, { "CD2", "HD21" }, { "CD2", "HD22" }, { "CD2", "HD23" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:324: warning: Member METData("MET", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "SD", 16 }, { "CE", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "HE3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "SD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "SD", "CE" }, { "CE", "HE1" }, { "CE", "HE2" }, { "CE", "HE3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:352: warning: Member ASNData("ASN", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "OD1", 8 }, { "ND2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD21", 1 }, { "HD22", 1 }, { "HD22", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "ND2" }, { "ND2", "HD21" }, { "ND2", "HD22" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "OD1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:388: warning: Member PROData("PRO", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OXT", 8 }, { "H", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HD3", 1 } }, { { "N", "CA" }, { "N", "CD" }, { "N", "H" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "HD2" }, { "CD", "HD3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:426: warning: Member GLNData("GLN", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OE1", 8 }, { "NE2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE21", 1 }, { "HE22", 1 }, { "HE22", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "NE2" }, { "NE2", "HE21" }, { "NE2", "HE22" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CD", "OE1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:453: warning: Member ARGData("ARG", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "NE", 7 }, { "CZ", 6 }, { "NH1", 7 }, { "NH2", 7 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HE", 1 }, { "HH11", 1 }, { "HH12", 1 }, { "HH21", 1 }, { "HH22", 1 }, { "HH22", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "NE" }, { "CD", "HD2" }, { "CD", "HD3" }, { "NE", "CZ" }, { "NE", "HE" }, { "CZ", "NH1" }, { "NH1", "HH11" }, { "NH1", "HH12" }, { "NH2", "HH21" }, { "NH2", "HH22" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CZ", "NH2" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:471: warning: Member SERData("SER", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "OG", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG", 1 }, { "HG", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "OG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "OG", "HG" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:502: warning: Member THRData("THR", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "OG1", 8 }, { "CG2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG1", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HG23", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "OG1" }, { "CB", "CG2" }, { "CB", "HB" }, { "OG1", "HG1" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:539: warning: Member VALData("VAL", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG1", 6 }, { "CG2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG11", 1 }, { "HG12", 1 }, { "HG13", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HG23", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG1" }, { "CB", "CG2" }, { "CB", "HB" }, { "CG1", "HG11" }, { "CG1", "HG12" }, { "CG1", "HG13" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:580: warning: Member TRPData("TRP", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "NE1", 7 }, { "CE2", 6 }, { "CE3", 6 }, { "CZ2", 6 }, { "CZ3", 6 }, { "CH2", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HE1", 1 }, { "HE3", 1 }, { "HZ2", 1 }, { "HZ3", 1 }, { "HH2", 1 }, { "HH2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "NE1" }, { "CD1", "HD1" }, { "CD2", "CE3" }, { "NE1", "CE2" }, { "NE1", "HE1" }, { "CE2", "CZ2" }, { "CE3", "HE3" }, { "CZ2", "HZ2" }, { "CZ3", "CH2" }, { "CZ3", "HZ3" }, { "CH2", "HH2" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE3", "CZ3" }, { "CZ2", "CH2" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:602: warning: Member TYRData("TYR", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "CE1", 6 }, { "CE2", 6 }, { "CZ", 6 }, { "OH", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HH", 1 }, { "HH", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "CE1" }, { "CD1", "HD1" }, { "CD2", "HD2" }, { "CE1", "HE1" }, { "CE2", "CZ" }, { "CE2", "HE2" }, { "CZ", "OH" }, { "OH", "HH" }, { "OXT", "HXT" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE1", "CZ" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:618: warning: Member DAData("DA", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H61", 1 }, { "H62", 1 }, { "H62", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "H61" }, { "N6", "H62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:645: warning: Member DCData("DC", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H41", 1 }, { "H42", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "C4", "N4" }, { "C4", "C5" }, { "N4", "H41" }, { "N4", "H42" }, { "C5", "H5" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "N3", "C4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:666: warning: Member DGData("DG", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H21", 1 }, { "H21", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "N2" }, { "N2", "H21" }, { "N2", "H22" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:693: warning: Member DTData("DT", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C5", 6 }, { "C7", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H3", 1 }, { "H71", 1 }, { "H72", 1 }, { "H73", 1 }, { "H73", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "H3" }, { "C4", "C5" }, { "C5", "C7" }, { "C7", "H71" }, { "C7", "H72" }, { "C7", "H73" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "C4", "O4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:716: warning: Member DIData("DI", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "H2''", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H1", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "C2'", "H2''" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:741: warning: Member AData("A", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H61", 1 }, { "H62", 1 }, { "H62", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "H61" }, { "N6", "H62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:768: warning: Member CData("C", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H41", 1 }, { "H42", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "C4", "N4" }, { "C4", "C5" }, { "N4", "H41" }, { "N4", "H42" }, { "C5", "H5" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "N3", "C4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:789: warning: Member GData("G", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H21", 1 }, { "H21", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "N2" }, { "N2", "H21" }, { "N2", "H22" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:816: warning: Member UData("U", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C5", 6 }, { "C6", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H3", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N1" }, { "C1'", "H1'" }, { "N1", "C2" }, { "N1", "C6" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "H3" }, { "C4", "C5" }, { "C5", "H5" }, { "C6", "H6" } }, { { "P", "OP1" }, { "C2", "O2" }, { "C4", "O4" }, { "C5", "C6" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:837: warning: Member IData("I", { { "OP3", 8 }, { "P", 15 }, { "OP1", 8 }, { "OP2", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP3", 1 }, { "HOP2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "H1", 1 }, { "H1", 1 } }, { { "OP3", "P" }, { "OP3", "HOP3" }, { "P", "OP2" }, { "P", "O5'" }, { "OP2", "HOP2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "H1" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "OP1" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:864: warning: Member HEMData("HEM", { { "CHA", 6 }, { "CHB", 6 }, { "CHC", 6 }, { "CHD", 6 }, { "C1A", 6 }, { "C2A", 6 }, { "C3A", 6 }, { "C4A", 6 }, { "CMA", 6 }, { "CAA", 6 }, { "CBA", 6 }, { "CGA", 6 }, { "O1A", 8 }, { "O2A", 8 }, { "C1B", 6 }, { "C2B", 6 }, { "C3B", 6 }, { "C4B", 6 }, { "CMB", 6 }, { "CAB", 6 }, { "CBB", 6 }, { "C1C", 6 }, { "C2C", 6 }, { "C3C", 6 }, { "C4C", 6 }, { "CMC", 6 }, { "CAC", 6 }, { "CBC", 6 }, { "C1D", 6 }, { "C2D", 6 }, { "C3D", 6 }, { "C4D", 6 }, { "CMD", 6 }, { "CAD", 6 }, { "CBD", 6 }, { "CGD", 6 }, { "O1D", 8 }, { "O2D", 8 }, { "NA", 7 }, { "NB", 7 }, { "NC", 7 }, { "ND", 7 }, { "FE", 26 }, { "HHB", 1 }, { "HHC", 1 }, { "HHD", 1 }, { "HMA", 1 }, { "HMAA", 1 }, { "HMAB", 1 }, { "HAA", 1 }, { "HAAA", 1 }, { "HBA", 1 }, { "HBAA", 1 }, { "HMB", 1 }, { "HMBA", 1 }, { "HMBB", 1 }, { "HAB", 1 }, { "HBB", 1 }, { "HBBA", 1 }, { "HMC", 1 }, { "HMCA", 1 }, { "HMCB", 1 }, { "HAC", 1 }, { "HBC", 1 }, { "HBCA", 1 }, { "HMD", 1 }, { "HMDA", 1 }, { "HMDB", 1 }, { "HAD", 1 }, { "HADA", 1 }, { "HBD", 1 }, { "HBDA", 1 }, { "H2A", 1 }, { "H2D", 1 }, { "H2D", 1 } }, { { "CHA", "C1A" }, { "CHA", "HHA" }, { "CHB", "C4A" }, { "CHB", "HHB" }, { "CHC", "C4B" }, { "CHC", "HHC" }, { "CHD", "C1D" }, { "CHD", "HHD" }, { "C1A", "NA" }, { "C2A", "C3A" }, { "C2A", "CAA" }, { "C3A", "CMA" }, { "C4A", "NA" }, { "CMA", "HMA" }, { "CMA", "HMAA" }, { "CMA", "HMAB" }, { "CAA", "CBA" }, { "CAA", "HAA" }, { "CAA", "HAAA" }, { "CBA", "CGA" }, { "CBA", "HBA" }, { "CBA", "HBAA" }, { "CGA", "O2A" }, { "O2A", "H2A" }, { "C1B", "C2B" }, { "C1B", "NB" }, { "C2B", "CMB" }, { "C3B", "C4B" }, { "C3B", "CAB" }, { "CMB", "HMB" }, { "CMB", "HMBA" }, { "CMB", "HMBB" }, { "CAB", "HAB" }, { "CBB", "HBB" }, { "CBB", "HBBA" }, { "C1C", "C2C" }, { "C1C", "NC" }, { "C2C", "CMC" }, { "C3C", "C4C" }, { "C3C", "CAC" }, { "C4C", "NC" }, { "CMC", "HMC" }, { "CMC", "HMCA" }, { "CMC", "HMCB" }, { "CAC", "HAC" }, { "CBC", "HBC" }, { "CBC", "HBCA" }, { "C1D", "C2D" }, { "C2D", "CMD" }, { "C3D", "C4D" }, { "C3D", "CAD" }, { "C4D", "ND" }, { "CMD", "HMD" }, { "CMD", "HMDA" }, { "CMD", "HMDB" }, { "CAD", "CBD" }, { "CAD", "HAD" }, { "CAD", "HADA" }, { "CBD", "CGD" }, { "CBD", "HBD" }, { "CBD", "HBDA" }, { "CGD", "O2D" }, { "O2D", "H2D" }, { "FE", "NA" }, { "FE", "NB" }, { "FE", "NC" }, { "FE", "ND" } }, { { "CHA", "C4D" }, { "CHB", "C1B" }, { "CHC", "C1C" }, { "CHD", "C4C" }, { "C1A", "C2A" }, { "C3A", "C4A" }, { "CGA", "O1A" }, { "C2B", "C3B" }, { "C4B", "NB" }, { "CAB", "CBB" }, { "C2C", "C3C" }, { "CAC", "CBC" }, { "C1D", "ND" }, { "C2D", "C3D" }, { "CGD", "O1D" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:916: warning: Member HOHData("HOH", { { "O", 8 }, { "H1", 1 }, { "H1", 1 } }, { { "O", "H1" }, { "O", "H2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:923: warning: Member SO4Data("SO4", { { "S", 16 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O3", 8 } }, { { "S", "O3" }, { "S", "O4" } }, { { "S", "O1" }, { "S", "O2" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:931: warning: Member GOLData("GOL", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "O3", 8 }, { "H11", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H2", 1 }, { "HO2", 1 }, { "H31", 1 }, { "H32", 1 }, { "H32", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "C3" }, { "C2", "H2" }, { "O2", "HO2" }, { "C3", "O3" }, { "C3", "H31" }, { "C3", "H32" }, { "O3", "HO3" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:963: warning: Member EDOData("EDO", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "H11", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H21", 1 }, { "H22", 1 }, { "H22", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "O2", "HO2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:987: warning: Member MSEData("MSE", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CB", 6 }, { "CG", 6 }, { "SE", 34 }, { "CE", 6 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HXT", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "OXT", "HXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "SE" }, { "CG", "HG2" }, { "CG", "HG3" }, { "SE", "CE" }, { "CE", "HE1" }, { "CE", "HE2" }, { "CE", "HE3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1015: warning: Member NAGData("NAG", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "C7", 6 }, { "C8", 6 }, { "N2", 7 }, { "O1", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "O7", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "H81", 1 }, { "H82", 1 }, { "H83", 1 }, { "HN2", 1 }, { "HO1", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "N2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "C7", "C8" }, { "C7", "N2" }, { "C8", "H81" }, { "C8", "H82" }, { "C8", "H83" }, { "N2", "HN2" }, { "O1", "HO1" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, { { "C7", "O7" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1035: warning: Member PO4Data("PO4", { { "P", 15 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O3", 8 } }, { { "P", "O2" }, { "P", "O3" }, { "P", "O4" } }, { { "P", "O1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1043: warning: Member ACTData("ACT", { { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CH3", 6 }, { "H1", 1 }, { "H2", 1 }, { "H2", 1 } }, { { "C", "OXT" }, { "C", "CH3" }, { "CH3", "H1" }, { "CH3", "H2" }, { "CH3", "H3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1060: warning: Member PEGData("PEG", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "C4", 6 }, { "O4", 8 }, { "H11", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "H41", 1 }, { "H42", 1 }, { "H42", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "O2", "C3" }, { "C3", "C4" }, { "C3", "H31" }, { "C3", "H32" }, { "C4", "O4" }, { "C4", "H41" }, { "C4", "H42" }, { "O4", "HO4" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1098: warning: Member BMAData("BMA", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1115: warning: Member MANData("MAN", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1132: warning: Member DMSData("DMS", { { "S", 16 }, { "O", 8 }, { "C1", 6 }, { "C2", 6 }, { "H11", 1 }, { "H12", 1 }, { "H13", 1 }, { "H21", 1 }, { "H22", 1 }, { "H22", 1 } }, { { "S", "C1" }, { "S", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C1", "H13" }, { "C2", "H21" }, { "C2", "H22" }, { "C2", "H23" } }, { { "S", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1155: warning: Member ADPData("ADP", { { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3B", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOB2", 1 }, { "HOB3", 1 }, { "HOA2", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "PB", "O2B" }, { "PB", "O3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3B", "HOB3" }, { "PA", "O2A" }, { "PA", "O3A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1185: warning: Member FADData("FAD", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C4X", 6 }, { "N5", 7 }, { "C5X", 6 }, { "C6", 6 }, { "C7", 6 }, { "C7M", 6 }, { "C8", 6 }, { "C8M", 6 }, { "C9", 6 }, { "C9A", 6 }, { "N10", 7 }, { "C10", 6 }, { "C1'", 6 }, { "C2'", 6 }, { "O2'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C4'", 6 }, { "O4'", 8 }, { "C5'", 6 }, { "O5'", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "HO2A", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "HN3", 1 }, { "H6", 1 }, { "HM71", 1 }, { "HM72", 1 }, { "HM73", 1 }, { "HM81", 1 }, { "HM82", 1 }, { "HM83", 1 }, { "H9", 1 }, { "H1'1", 1 }, { "H1'2", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H4'", 1 }, { "HO4'", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H5'2", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3P" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "HO2A" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "N1", "C2" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "C4X" }, { "C4X", "C10" }, { "N5", "C5X" }, { "C5X", "C9A" }, { "C6", "C7" }, { "C6", "H6" }, { "C7", "C7M" }, { "C7M", "HM71" }, { "C7M", "HM72" }, { "C7M", "HM73" }, { "C8", "C8M" }, { "C8", "C9" }, { "C8M", "HM81" }, { "C8M", "HM82" }, { "C8M", "HM83" }, { "C9", "H9" }, { "C9A", "N10" }, { "N10", "C10" }, { "N10", "C1'" }, { "C1'", "C2'" }, { "C1'", "H1'1" }, { "C1'", "H1'2" }, { "C2'", "O2'" }, { "C2'", "C3'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C3'", "O3'" }, { "C3'", "C4'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C4'", "O4'" }, { "C4'", "C5'" }, { "C4'", "H4'" }, { "O4'", "HO4'" }, { "C5'", "O5'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "O5'", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "N1", "C10" }, { "C2", "O2" }, { "C4", "O4" }, { "C4X", "N5" }, { "C5X", "C6" }, { "C7", "C8" }, { "C9", "C9A" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1241: warning: Member ACEData("ACE", { { "C", 6 }, { "O", 8 }, { "CH3", 6 }, { "H", 1 }, { "H1", 1 }, { "H2", 1 }, { "H2", 1 } }, { { "C", "CH3" }, { "C", "H" }, { "CH3", "H1" }, { "CH3", "H2" }, { "CH3", "H3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1258: warning: Member MPDData("MPD", { { "C1", 6 }, { "C2", 6 }, { "O2", 8 }, { "CM", 6 }, { "C3", 6 }, { "C4", 6 }, { "O4", 8 }, { "C5", 6 }, { "H11", 1 }, { "H12", 1 }, { "H13", 1 }, { "HO2", 1 }, { "HM1", 1 }, { "HM2", 1 }, { "HM3", 1 }, { "H31", 1 }, { "H32", 1 }, { "H4", 1 }, { "HO4", 1 }, { "H51", 1 }, { "H52", 1 }, { "H52", 1 } }, { { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C1", "H13" }, { "C2", "O2" }, { "C2", "CM" }, { "C2", "C3" }, { "O2", "HO2" }, { "CM", "HM1" }, { "CM", "HM2" }, { "CM", "HM3" }, { "C3", "C4" }, { "C3", "H31" }, { "C3", "H32" }, { "C4", "O4" }, { "C4", "C5" }, { "C4", "H4" }, { "O4", "HO4" }, { "C5", "H51" }, { "C5", "H52" }, { "C5", "H53" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1276: warning: Member GLCData("GLC", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1293: warning: Member ATPData("ATP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3B", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HOB2", 1 }, { "HOA2", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "O3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "PB", "O2B" }, { "PB", "O3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "PA", "O2A" }, { "PA", "O3A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1326: warning: Member MESData("MES", { { "O1", 8 }, { "C2", 6 }, { "C3", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "C7", 6 }, { "C8", 6 }, { "S", 16 }, { "O1S", 8 }, { "O2S", 8 }, { "O3S", 8 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "HN4", 1 }, { "H51", 1 }, { "H52", 1 }, { "H61", 1 }, { "H62", 1 }, { "H71", 1 }, { "H72", 1 }, { "H81", 1 }, { "H81", 1 } }, { { "O1", "C2" }, { "O1", "C6" }, { "C2", "C3" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "N4" }, { "C3", "H31" }, { "C3", "H32" }, { "N4", "C5" }, { "N4", "C7" }, { "N4", "HN4" }, { "C5", "C6" }, { "C5", "H51" }, { "C5", "H52" }, { "C6", "H61" }, { "C6", "H62" }, { "C7", "C8" }, { "C7", "H71" }, { "C7", "H72" }, { "C8", "S" }, { "C8", "H81" }, { "C8", "H82" }, { "S", "O3S" } }, { { "S", "O1S" }, { "S", "O2S" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1343: warning: Member TRSData("TRS", { { "C", 6 }, { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "N", 7 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "H11", 1 }, { "H12", 1 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "HN1", 1 }, { "HN2", 1 }, { "HN3", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO2", 1 } }, { { "C", "C1" }, { "C", "C2" }, { "C", "C3" }, { "C", "N" }, { "C1", "O1" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "O3" }, { "C3", "H31" }, { "C3", "H32" }, { "N", "HN1" }, { "N", "HN2" }, { "N", "HN3" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1372: warning: Member PG4Data("PG4", { { "O1", 8 }, { "C1", 6 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "C4", 6 }, { "O3", 8 }, { "C5", 6 }, { "C6", 6 }, { "O4", 8 }, { "C7", 6 }, { "C8", 6 }, { "O5", 8 }, { "HO1", 1 }, { "H11", 1 }, { "H12", 1 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "H41", 1 }, { "H42", 1 }, { "H51", 1 }, { "H52", 1 }, { "H61", 1 }, { "H62", 1 }, { "H71", 1 }, { "H72", 1 }, { "H81", 1 }, { "H82", 1 }, { "H82", 1 } }, { { "O1", "C1" }, { "O1", "HO1" }, { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "O2" }, { "C2", "H21" }, { "C2", "H22" }, { "O2", "C3" }, { "C3", "C4" }, { "C3", "H31" }, { "C3", "H32" }, { "C4", "O3" }, { "C4", "H41" }, { "C4", "H42" }, { "O3", "C5" }, { "C5", "C6" }, { "C5", "H51" }, { "C5", "H52" }, { "C6", "O4" }, { "C6", "H61" }, { "C6", "H62" }, { "O4", "C7" }, { "C7", "C8" }, { "C7", "H71" }, { "C7", "H72" }, { "C8", "O5" }, { "C8", "H81" }, { "C8", "H82" }, { "O5", "HO5" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1393: warning: Member PGEData("PGE", { { "C1", 6 }, { "O1", 8 }, { "C2", 6 }, { "O2", 8 }, { "C3", 6 }, { "C4", 6 }, { "O4", 8 }, { "C6", 6 }, { "C5", 6 }, { "O3", 8 }, { "H1", 1 }, { "H12", 1 }, { "HO1", 1 }, { "H2", 1 }, { "H22", 1 }, { "H3", 1 }, { "H32", 1 }, { "H4", 1 }, { "H42", 1 }, { "HO4", 1 }, { "H6", 1 }, { "H62", 1 }, { "H5", 1 }, { "H5", 1 } }, { { "C1", "O1" }, { "C1", "C2" }, { "C1", "H1" }, { "C1", "H12" }, { "O1", "HO1" }, { "C2", "O2" }, { "C2", "H2" }, { "C2", "H22" }, { "O2", "C3" }, { "C3", "C4" }, { "C3", "H3" }, { "C3", "H32" }, { "C4", "O3" }, { "C4", "H4" }, { "C4", "H42" }, { "O4", "C6" }, { "O4", "HO4" }, { "C6", "C5" }, { "C6", "H6" }, { "C6", "H62" }, { "C5", "O3" }, { "C5", "H5" }, { "C5", "H52" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1410: warning: Member NADData("NAD", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "O3", 8 }, { "PN", 15 }, { "O1N", 8 }, { "O2N", 8 }, { "O5D", 8 }, { "C5D", 6 }, { "C4D", 6 }, { "O4D", 8 }, { "C3D", 6 }, { "O3D", 8 }, { "C2D", 6 }, { "O2D", 8 }, { "C1D", 6 }, { "N1N", 7 }, { "C2N", 6 }, { "C3N", 6 }, { "C7N", 6 }, { "O7N", 8 }, { "N7N", 7 }, { "C4N", 6 }, { "C5N", 6 }, { "C6N", 6 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "HO2A", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "H51N", 1 }, { "H52N", 1 }, { "H4D", 1 }, { "H3D", 1 }, { "HO3N", 1 }, { "H2D", 1 }, { "HO2N", 1 }, { "H1D", 1 }, { "H2N", 1 }, { "H71N", 1 }, { "H72N", 1 }, { "H4N", 1 }, { "H5N", 1 }, { "H5N", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "HO2A" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "O3", "PN" }, { "PN", "O2N" }, { "PN", "O5D" }, { "O5D", "C5D" }, { "C5D", "C4D" }, { "C5D", "H51N" }, { "C5D", "H52N" }, { "C4D", "O4D" }, { "C4D", "C3D" }, { "C4D", "H4D" }, { "O4D", "C1D" }, { "C3D", "O3D" }, { "C3D", "C2D" }, { "C3D", "H3D" }, { "O3D", "HO3N" }, { "C2D", "O2D" }, { "C2D", "C1D" }, { "C2D", "H2D" }, { "O2D", "HO2N" }, { "C1D", "N1N" }, { "C1D", "H1D" }, { "N1N", "C2N" }, { "C2N", "H2N" }, { "C3N", "C7N" }, { "C3N", "C4N" }, { "C7N", "N7N" }, { "N7N", "H71N" }, { "N7N", "H72N" }, { "C4N", "H4N" }, { "C5N", "C6N" }, { "C5N", "H5N" }, { "C6N", "H6N" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "PN", "O1N" }, { "N1N", "C6N" }, { "C2N", "C3N" }, { "C7N", "O7N" }, { "C4N", "C5N" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1457: warning: Member FUCData("FUC", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "H63", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO3", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "H61" }, { "C6", "H62" }, { "C6", "H63" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1474: warning: Member NH2Data("NH2", { { "N", 7 }, { "HN1", 1 }, { "HN1", 1 } }, { { "N", "HN1" }, { "N", "HN2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1481: warning: Member FMTData("FMT", { { "C", 6 }, { "O1", 8 }, { "O2", 8 }, { "H", 1 }, { "H", 1 } }, { { "C", "O2" }, { "C", "H" }, { "O2", "HO2" } }, { { "C", "O1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1489: warning: Member NAPData("NAP", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "O3", 8 }, { "PN", 15 }, { "O1N", 8 }, { "O2N", 8 }, { "O5D", 8 }, { "C5D", 6 }, { "C4D", 6 }, { "O4D", 8 }, { "C3D", 6 }, { "O3D", 8 }, { "C2D", 6 }, { "O2D", 8 }, { "C1D", 6 }, { "N1N", 7 }, { "C2N", 6 }, { "C3N", 6 }, { "C7N", 6 }, { "O7N", 8 }, { "N7N", 7 }, { "C4N", 6 }, { "C5N", 6 }, { "C6N", 6 }, { "P2B", 15 }, { "O1X", 8 }, { "O2X", 8 }, { "O3X", 8 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "H51N", 1 }, { "H52N", 1 }, { "H4D", 1 }, { "H3D", 1 }, { "HO3N", 1 }, { "H2D", 1 }, { "HO2N", 1 }, { "H1D", 1 }, { "H2N", 1 }, { "H71N", 1 }, { "H72N", 1 }, { "H4N", 1 }, { "H5N", 1 }, { "H6N", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "P2B" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "O3", "PN" }, { "PN", "O2N" }, { "PN", "O5D" }, { "O5D", "C5D" }, { "C5D", "C4D" }, { "C5D", "H51N" }, { "C5D", "H52N" }, { "C4D", "O4D" }, { "C4D", "C3D" }, { "C4D", "H4D" }, { "O4D", "C1D" }, { "C3D", "O3D" }, { "C3D", "C2D" }, { "C3D", "H3D" }, { "O3D", "HO3N" }, { "C2D", "O2D" }, { "C2D", "C1D" }, { "C2D", "H2D" }, { "O2D", "HO2N" }, { "C1D", "N1N" }, { "C1D", "H1D" }, { "N1N", "C2N" }, { "C2N", "H2N" }, { "C3N", "C7N" }, { "C3N", "C4N" }, { "C7N", "N7N" }, { "N7N", "H71N" }, { "N7N", "H72N" }, { "C4N", "H4N" }, { "C5N", "C6N" }, { "C5N", "H5N" }, { "C6N", "H6N" }, { "P2B", "O2X" }, { "P2B", "O3X" }, { "O2X", "HOP2" }, { "O3X", "HOP3" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "PN", "O1N" }, { "N1N", "C6N" }, { "C2N", "C3N" }, { "C7N", "O7N" }, { "C4N", "C5N" }, { "P2B", "O1X" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1539: warning: Member SEPData("SEP", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "OG", 8 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HXT", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "OG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "OG", "P" }, { "C", "OXT" }, { "OXT", "HXT" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" } }, { { "C", "O" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1579: warning: Member GDPData("GDP", { { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3B", 8 }, { "O3A", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOB2", 1 }, { "HOB3", 1 }, { "HOA2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN1", 1 }, { "HN21", 1 }, { "HN21", 1 } }, { { "PB", "O2B" }, { "PB", "O3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3B", "HOB3" }, { "O3A", "PA" }, { "PA", "O2A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "HN1" }, { "C2", "N2" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" } }, { { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1609: warning: Member GALData("GAL", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H1", 1 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1626: warning: Member SF4Data("SF4", { { "FE1", 26 }, { "FE2", 26 }, { "FE3", 26 }, { "FE4", 26 }, { "S1", 16 }, { "S2", 16 }, { "S3", 16 }, { "S3", 16 } }, { { "FE1", "S2" }, { "FE1", "S3" }, { "FE1", "S4" }, { "FE2", "S1" }, { "FE2", "S3" }, { "FE2", "S4" }, { "FE3", "S1" }, { "FE3", "S2" }, { "FE3", "S4" }, { "FE4", "S1" }, { "FE4", "S2" }, { "FE4", "S3" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1651: warning: Member BGCData("BGC", { { "C2", 6 }, { "C3", 6 }, { "C4", 6 }, { "C5", 6 }, { "C6", 6 }, { "C1", 6 }, { "O1", 8 }, { "O2", 8 }, { "O3", 8 }, { "O4", 8 }, { "O5", 8 }, { "O6", 8 }, { "H2", 1 }, { "H3", 1 }, { "H4", 1 }, { "H5", 1 }, { "H61", 1 }, { "H62", 1 }, { "H1", 1 }, { "HO1", 1 }, { "HO2", 1 }, { "HO3", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C2", "C3" }, { "C2", "C1" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "C4" }, { "C3", "O3" }, { "C3", "H3" }, { "C4", "C5" }, { "C4", "O4" }, { "C4", "H4" }, { "C5", "C6" }, { "C5", "O5" }, { "C5", "H5" }, { "C6", "O6" }, { "C6", "H61" }, { "C6", "H62" }, { "C1", "O1" }, { "C1", "O5" }, { "C1", "H1" }, { "O1", "HO1" }, { "O2", "HO2" }, { "O3", "HO3" }, { "O4", "HO4" }, { "O6", "HO6" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1668: warning: Member FMNData("FMN", { { "N1", 7 }, { "C2", 6 }, { "O2", 8 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C4A", 6 }, { "N5", 7 }, { "C5A", 6 }, { "C6", 6 }, { "C7", 6 }, { "C7M", 6 }, { "C8", 6 }, { "C8M", 6 }, { "C9", 6 }, { "C9A", 6 }, { "N10", 7 }, { "C10", 6 }, { "C1'", 6 }, { "C2'", 6 }, { "O2'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C4'", 6 }, { "O4'", 8 }, { "C5'", 6 }, { "O5'", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "HN3", 1 }, { "H6", 1 }, { "HM71", 1 }, { "HM72", 1 }, { "HM73", 1 }, { "HM81", 1 }, { "HM82", 1 }, { "HM83", 1 }, { "H9", 1 }, { "H1'1", 1 }, { "H1'2", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H4'", 1 }, { "HO4'", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "N1", "C2" }, { "C2", "N3" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "C4A" }, { "C4A", "C10" }, { "N5", "C5A" }, { "C5A", "C9A" }, { "C6", "C7" }, { "C6", "H6" }, { "C7", "C7M" }, { "C7M", "HM71" }, { "C7M", "HM72" }, { "C7M", "HM73" }, { "C8", "C8M" }, { "C8", "C9" }, { "C8M", "HM81" }, { "C8M", "HM82" }, { "C8M", "HM83" }, { "C9", "H9" }, { "C9A", "N10" }, { "N10", "C10" }, { "N10", "C1'" }, { "C1'", "C2'" }, { "C1'", "H1'1" }, { "C1'", "H1'2" }, { "C2'", "O2'" }, { "C2'", "C3'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C3'", "O3'" }, { "C3'", "C4'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C4'", "O4'" }, { "C4'", "C5'" }, { "C4'", "H4'" }, { "O4'", "HO4'" }, { "C5'", "O5'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "O5'", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" } }, { { "N1", "C10" }, { "C2", "O2" }, { "C4", "O4" }, { "C4A", "N5" }, { "C5A", "C6" }, { "C7", "C8" }, { "C9", "C9A" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1704: warning: Member UNKData("UNK", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "CB", 6 }, { "CG", 6 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HG3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CG", "HG1" }, { "CG", "HG2" }, { "CG", "HG3" }, { "OXT", "HXT" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1739: warning: Member CITData("CIT", { { "C1", 6 }, { "O1", 8 }, { "O2", 8 }, { "C2", 6 }, { "C3", 6 }, { "O7", 8 }, { "C4", 6 }, { "C5", 6 }, { "O3", 8 }, { "O4", 8 }, { "C6", 6 }, { "O5", 8 }, { "O6", 8 }, { "HO2", 1 }, { "H21", 1 }, { "H22", 1 }, { "HO7", 1 }, { "H41", 1 }, { "H42", 1 }, { "HO4", 1 }, { "HO4", 1 } }, { { "C1", "O2" }, { "C1", "C2" }, { "O2", "HO2" }, { "C2", "C3" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "O7" }, { "C3", "C4" }, { "C3", "C6" }, { "O7", "HO7" }, { "C4", "C5" }, { "C4", "H41" }, { "C4", "H42" }, { "C5", "O4" }, { "O4", "HO4" }, { "C6", "O6" }, { "O6", "HO6" } }, { { "C1", "O1" }, { "C5", "O3" }, { "C6", "O5" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1767: warning: Member EPEData("EPE", { { "N1", 7 }, { "C2", 6 }, { "C3", 6 }, { "N4", 7 }, { "C5", 6 }, { "C6", 6 }, { "C7", 6 }, { "C8", 6 }, { "O8", 8 }, { "C9", 6 }, { "C10", 6 }, { "S", 16 }, { "O1S", 8 }, { "O2S", 8 }, { "O3S", 8 }, { "H21", 1 }, { "H22", 1 }, { "H31", 1 }, { "H32", 1 }, { "H51", 1 }, { "H52", 1 }, { "H61", 1 }, { "H62", 1 }, { "H71", 1 }, { "H72", 1 }, { "H81", 1 }, { "H82", 1 }, { "HO8", 1 }, { "H91", 1 }, { "H92", 1 }, { "H101", 1 }, { "H102", 1 }, { "H102", 1 } }, { { "N1", "C2" }, { "N1", "C6" }, { "N1", "C9" }, { "C2", "C3" }, { "C2", "H21" }, { "C2", "H22" }, { "C3", "N4" }, { "C3", "H31" }, { "C3", "H32" }, { "N4", "C5" }, { "N4", "C7" }, { "C5", "C6" }, { "C5", "H51" }, { "C5", "H52" }, { "C6", "H61" }, { "C6", "H62" }, { "C7", "C8" }, { "C7", "H71" }, { "C7", "H72" }, { "C8", "O8" }, { "C8", "H81" }, { "C8", "H82" }, { "O8", "HO8" }, { "C9", "C10" }, { "C9", "H91" }, { "C9", "H92" }, { "C10", "S" }, { "C10", "H101" }, { "C10", "H102" }, { "S", "O3S" }, { "O3S", "HOS3" } }, { { "S", "O1S" }, { "S", "O2S" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1788: warning: Member TPOData("TPO", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG2", 6 }, { "OG1", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "H", 1 }, { "H2", 1 }, { "HA", 1 }, { "HB", 1 }, { "HG21", 1 }, { "HG22", 1 }, { "HG23", 1 }, { "HOP2", 1 }, { "HOP3", 1 }, { "HOP3", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "H2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG2" }, { "CB", "OG1" }, { "CB", "HB" }, { "CG2", "HG21" }, { "CG2", "HG22" }, { "CG2", "HG23" }, { "OG1", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" }, { "C", "OXT" }, { "OXT", "HXT" } }, { { "P", "O1P" }, { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1818: warning: Member PLPData("PLP", { { "N1", 7 }, { "C2", 6 }, { "C2A", 6 }, { "C3", 6 }, { "O3", 8 }, { "C4", 6 }, { "C4A", 6 }, { "O4A", 8 }, { "C5", 6 }, { "C6", 6 }, { "C5A", 6 }, { "O4P", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "H2A1", 1 }, { "H2A2", 1 }, { "H2A3", 1 }, { "HO3", 1 }, { "H4A", 1 }, { "H6", 1 }, { "H5A1", 1 }, { "H5A2", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "N1", "C6" }, { "C2", "C2A" }, { "C2", "C3" }, { "C2A", "H2A1" }, { "C2A", "H2A2" }, { "C2A", "H2A3" }, { "C3", "O3" }, { "O3", "HO3" }, { "C4", "C4A" }, { "C4", "C5" }, { "C4A", "H4A" }, { "C5", "C5A" }, { "C6", "H6" }, { "C5A", "O4P" }, { "C5A", "H5A1" }, { "C5A", "H5A2" }, { "O4P", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HOP2" }, { "O3P", "HOP3" } }, { { "N1", "C2" }, { "C3", "C4" }, { "C4A", "O4A" }, { "C5", "C6" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1840: warning: Member GTPData("GTP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "O3B", 8 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3A", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HOB2", 1 }, { "HOA2", 1 }, { "H5'", 1 }, { "H5''", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN1", 1 }, { "HN21", 1 }, { "HN21", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "O3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "O3B", "PB" }, { "PB", "O2B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3A", "PA" }, { "PA", "O2A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'" }, { "C5'", "H5''" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "HN1" }, { "C2", "N2" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1873: warning: Member SAHData("SAH", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG", 6 }, { "SD", 16 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HN1", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HXT", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "N", "CA" }, { "N", "HN1" }, { "N", "HN2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CG", "SD" }, { "CG", "HG1" }, { "CG", "HG2" }, { "SD", "C5'" }, { "C", "OXT" }, { "OXT", "HXT" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "C", "O" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1904: warning: Member BMEData("BME", { { "C1", 6 }, { "C2", 6 }, { "O1", 8 }, { "S2", 16 }, { "H11", 1 }, { "H12", 1 }, { "H21", 1 }, { "H22", 1 }, { "HO1", 1 }, { "HO1", 1 } }, { { "C1", "C2" }, { "C1", "O1" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "S2" }, { "C2", "H21" }, { "C2", "H22" }, { "O1", "HO1" }, { "S2", "HS2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1928: warning: Member ACYData("ACY", { { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CH3", 6 }, { "HXT", 1 }, { "H1", 1 }, { "H2", 1 }, { "H2", 1 } }, { { "C", "OXT" }, { "C", "CH3" }, { "OXT", "HXT" }, { "CH3", "H1" }, { "CH3", "H2" }, { "CH3", "H3" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1947: warning: Member ANPData("ANP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "N3B", 7 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HOB2", 1 }, { "HNB1", 1 }, { "HOA2", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "N3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "PB", "O2B" }, { "PB", "N3B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "N3B", "HNB1" }, { "PA", "O2A" }, { "PA", "O3A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:1980: warning: Member IMDData("IMD", { { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "C5", 6 }, { "HN1", 1 }, { "H2", 1 }, { "HN3", 1 }, { "H4", 1 }, { "H4", 1 } }, { { "N1", "C2" }, { "N1", "C5" }, { "N1", "HN1" }, { "C2", "H2" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "H4" }, { "C5", "H5" } }, { { "C2", "N3" }, { "C4", "C5" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2003: warning: Member PCAData("PCA", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "OE", 8 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "H", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HG3", 1 } }, { { "N", "CA" }, { "N", "CD" }, { "N", "H" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "C", "OXT" }, { "OXT", "HXT" } }, { { "CD", "OE" }, { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2038: warning: Member CSOData("CSO", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "SG", 16 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "OD", 8 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HXT", 1 }, { "HXT", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "SG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "SG", "OD" }, { "C", "OXT" }, { "OXT", "HXT" }, { "OD", "HD" } }, { { "C", "O" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2071: warning: Member MLIData("MLI", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "O6", 8 }, { "O7", 8 }, { "O8", 8 }, { "O9", 8 }, { "H11", 1 }, { "H11", 1 } }, { { "C1", "C2" }, { "C1", "C3" }, { "C1", "H11" }, { "C1", "H12" }, { "C2", "O7" }, { "C3", "O9" } }, { { "C2", "O6" }, { "C3", "O8" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2091: warning: Member FESData("FES", { { "FE1", 26 }, { "FE2", 26 }, { "S1", 16 }, { "S1", 16 } }, { { "FE1", "S1" }, { "FE1", "S2" }, { "FE2", "S1" }, { "FE2", "S2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2100: warning: Member NDPData("NDP", { { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5B", 8 }, { "C5B", 6 }, { "C4B", 6 }, { "O4B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "C2B", 6 }, { "O2B", 8 }, { "C1B", 6 }, { "N9A", 7 }, { "C8A", 6 }, { "N7A", 7 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "O3", 8 }, { "PN", 15 }, { "O1N", 8 }, { "O2N", 8 }, { "O5D", 8 }, { "C5D", 6 }, { "C4D", 6 }, { "O4D", 8 }, { "C3D", 6 }, { "O3D", 8 }, { "C2D", 6 }, { "O2D", 8 }, { "C1D", 6 }, { "N1N", 7 }, { "C2N", 6 }, { "C3N", 6 }, { "C7N", 6 }, { "O7N", 8 }, { "N7N", 7 }, { "C4N", 6 }, { "C5N", 6 }, { "C6N", 6 }, { "P2B", 15 }, { "O1X", 8 }, { "O2X", 8 }, { "O3X", 8 }, { "HOA2", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "H4B", 1 }, { "H3B", 1 }, { "HO3A", 1 }, { "H2B", 1 }, { "H1B", 1 }, { "H8A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H2A", 1 }, { "H21N", 1 }, { "H51N", 1 }, { "H52N", 1 }, { "H4D", 1 }, { "H3D", 1 }, { "HO3N", 1 }, { "H2D", 1 }, { "HO2N", 1 }, { "H1D", 1 }, { "H2N", 1 }, { "H71N", 1 }, { "H72N", 1 }, { "H41N", 1 }, { "H42N", 1 }, { "H5N", 1 }, { "H6N", 1 }, { "HOP2", 1 }, { "HOP2", 1 } }, { { "PA", "O2A" }, { "PA", "O5B" }, { "PA", "O3" }, { "O2A", "HOA2" }, { "O5B", "C5B" }, { "C5B", "C4B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "C4B", "O4B" }, { "C4B", "C3B" }, { "C4B", "H4B" }, { "O4B", "C1B" }, { "C3B", "O3B" }, { "C3B", "C2B" }, { "C3B", "H3B" }, { "O3B", "HO3A" }, { "C2B", "O2B" }, { "C2B", "C1B" }, { "C2B", "H2B" }, { "O2B", "P2B" }, { "C1B", "N9A" }, { "C1B", "H1B" }, { "N9A", "C8A" }, { "N9A", "C4A" }, { "C8A", "H8A" }, { "N7A", "C5A" }, { "C5A", "C6A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "O3", "PN" }, { "PN", "O2N" }, { "PN", "O5D" }, { "O2N", "H21N" }, { "O5D", "C5D" }, { "C5D", "C4D" }, { "C5D", "H51N" }, { "C5D", "H52N" }, { "C4D", "O4D" }, { "C4D", "C3D" }, { "C4D", "H4D" }, { "O4D", "C1D" }, { "C3D", "O3D" }, { "C3D", "C2D" }, { "C3D", "H3D" }, { "O3D", "HO3N" }, { "C2D", "O2D" }, { "C2D", "C1D" }, { "C2D", "H2D" }, { "O2D", "HO2N" }, { "C1D", "N1N" }, { "C1D", "H1D" }, { "N1N", "C2N" }, { "N1N", "C6N" }, { "C2N", "H2N" }, { "C3N", "C7N" }, { "C3N", "C4N" }, { "C7N", "N7N" }, { "N7N", "H71N" }, { "N7N", "H72N" }, { "C4N", "C5N" }, { "C4N", "H41N" }, { "C4N", "H42N" }, { "C5N", "H5N" }, { "C6N", "H6N" }, { "P2B", "O2X" }, { "P2B", "O3X" }, { "O2X", "HOP2" }, { "O3X", "HOP3" } }, { { "PA", "O1A" }, { "C8A", "N7A" }, { "C5A", "C4A" }, { "C6A", "N1A" }, { "C2A", "N3A" }, { "PN", "O1N" }, { "C2N", "C3N" }, { "C7N", "O7N" }, { "C5N", "C6N" }, { "P2B", "O1X" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2155: warning: Member AMPData("AMP", { { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HOP2", 1 }, { "HOP3", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "P", "O2P" }, { "P", "O3P" }, { "P", "O5'" }, { "O2P", "HOP2" }, { "O3P", "HOP3" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "P", "O1P" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2182: warning: Member NO3Data("NO3", { { "N", 7 }, { "O1", 8 }, { "O2", 8 }, { "O2", 8 } }, { { "N", "O2" }, { "N", "O3" } }, { { "N", "O1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2189: warning: Member PTRData("PTR", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CB", 6 }, { "CG", 6 }, { "CD1", 6 }, { "CD2", 6 }, { "CE1", 6 }, { "CE2", 6 }, { "CZ", 6 }, { "OH", 8 }, { "P", 15 }, { "O1P", 8 }, { "O2P", 8 }, { "O3P", 8 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HXT", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HD1", 1 }, { "HD2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HO2P", 1 }, { "HO2P", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "OXT", "HXT" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD2" }, { "CD1", "CE1" }, { "CD1", "HD1" }, { "CD2", "HD2" }, { "CE1", "HE1" }, { "CE2", "CZ" }, { "CE2", "HE2" }, { "CZ", "OH" }, { "OH", "P" }, { "P", "O2P" }, { "P", "O3P" }, { "O2P", "HO2P" }, { "O3P", "HO3P" } }, { { "C", "O" }, { "CG", "CD1" }, { "CD2", "CE2" }, { "CE1", "CZ" }, { "P", "O1P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2211: warning: Member IPAData("IPA", { { "C1", 6 }, { "C2", 6 }, { "C3", 6 }, { "O2", 8 }, { "H11", 1 }, { "H12", 1 }, { "H13", 1 }, { "H2", 1 }, { "H31", 1 }, { "H32", 1 }, { "H33", 1 }, { "H33", 1 } }, { { "C1", "C2" }, { "C1", "H11" }, { "C1", "H12" }, { "C1", "H13" }, { "C2", "C3" }, { "C2", "O2" }, { "C2", "H2" }, { "C3", "H31" }, { "C3", "H32" }, { "C3", "H33" }, { "O2", "HO2" } }, {}) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2239: warning: Member COAData("COA", { { "N1A", 7 }, { "C2A", 6 }, { "N3A", 7 }, { "C4A", 6 }, { "C5A", 6 }, { "C6A", 6 }, { "N6A", 7 }, { "N7A", 7 }, { "C8A", 6 }, { "N9A", 7 }, { "C1B", 6 }, { "C2B", 6 }, { "O2B", 8 }, { "C3B", 6 }, { "O3B", 8 }, { "P3B", 15 }, { "O7A", 8 }, { "O8A", 8 }, { "O9A", 8 }, { "C4B", 6 }, { "O4B", 8 }, { "C5B", 6 }, { "O5B", 8 }, { "P1A", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O3A", 8 }, { "P2A", 15 }, { "O4A", 8 }, { "O5A", 8 }, { "O6A", 8 }, { "CBP", 6 }, { "CCP", 6 }, { "CDP", 6 }, { "CEP", 6 }, { "CAP", 6 }, { "OAP", 8 }, { "C9P", 6 }, { "O9P", 8 }, { "N8P", 7 }, { "C7P", 6 }, { "C6P", 6 }, { "C5P", 6 }, { "O5P", 8 }, { "N4P", 7 }, { "C3P", 6 }, { "C2P", 6 }, { "S1P", 16 }, { "H2A", 1 }, { "H61A", 1 }, { "H62A", 1 }, { "H8A", 1 }, { "H1B", 1 }, { "H2B", 1 }, { "HO2A", 1 }, { "H3B", 1 }, { "HOA8", 1 }, { "HOA9", 1 }, { "H4B", 1 }, { "H51A", 1 }, { "H52A", 1 }, { "HOA2", 1 }, { "HOA5", 1 }, { "H121", 1 }, { "H122", 1 }, { "H131", 1 }, { "H132", 1 }, { "H133", 1 }, { "H141", 1 }, { "H142", 1 }, { "H143", 1 }, { "H10", 1 }, { "HO1", 1 }, { "HN8", 1 }, { "H71", 1 }, { "H72", 1 }, { "H61", 1 }, { "H62", 1 }, { "HN4", 1 }, { "H31", 1 }, { "H32", 1 }, { "H21", 1 }, { "H22", 1 }, { "H22", 1 } }, { { "N1A", "C2A" }, { "C2A", "H2A" }, { "N3A", "C4A" }, { "C4A", "N9A" }, { "C5A", "C6A" }, { "C5A", "N7A" }, { "C6A", "N6A" }, { "N6A", "H61A" }, { "N6A", "H62A" }, { "C8A", "N9A" }, { "C8A", "H8A" }, { "N9A", "C1B" }, { "C1B", "C2B" }, { "C1B", "O4B" }, { "C1B", "H1B" }, { "C2B", "O2B" }, { "C2B", "C3B" }, { "C2B", "H2B" }, { "O2B", "HO2A" }, { "C3B", "O3B" }, { "C3B", "C4B" }, { "C3B", "H3B" }, { "O3B", "P3B" }, { "P3B", "O8A" }, { "P3B", "O9A" }, { "O8A", "HOA8" }, { "O9A", "HOA9" }, { "C4B", "O4B" }, { "C4B", "C5B" }, { "C4B", "H4B" }, { "C5B", "O5B" }, { "C5B", "H51A" }, { "C5B", "H52A" }, { "O5B", "P1A" }, { "P1A", "O2A" }, { "P1A", "O3A" }, { "O2A", "HOA2" }, { "O3A", "P2A" }, { "P2A", "O5A" }, { "P2A", "O6A" }, { "O5A", "HOA5" }, { "O6A", "CCP" }, { "CBP", "CCP" }, { "CBP", "CDP" }, { "CBP", "CEP" }, { "CBP", "CAP" }, { "CCP", "H121" }, { "CCP", "H122" }, { "CDP", "H131" }, { "CDP", "H132" }, { "CDP", "H133" }, { "CEP", "H141" }, { "CEP", "H142" }, { "CEP", "H143" }, { "CAP", "OAP" }, { "CAP", "C9P" }, { "CAP", "H10" }, { "OAP", "HO1" }, { "C9P", "N8P" }, { "N8P", "C7P" }, { "N8P", "HN8" }, { "C7P", "C6P" }, { "C7P", "H71" }, { "C7P", "H72" }, { "C6P", "C5P" }, { "C6P", "H61" }, { "C6P", "H62" }, { "C5P", "N4P" }, { "N4P", "C3P" }, { "N4P", "HN4" }, { "C3P", "C2P" }, { "C3P", "H31" }, { "C3P", "H32" }, { "C2P", "S1P" }, { "C2P", "H21" }, { "C2P", "H22" }, { "S1P", "HS1" } }, { { "N1A", "C6A" }, { "C2A", "N3A" }, { "C4A", "C5A" }, { "N7A", "C8A" }, { "P3B", "O7A" }, { "P1A", "O1A" }, { "P2A", "O4A" }, { "C9P", "O9P" }, { "C5P", "O5P" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2290: warning: Member KCXData("KCX", { { "N", 7 }, { "CA", 6 }, { "CB", 6 }, { "CG", 6 }, { "CD", 6 }, { "CE", 6 }, { "NZ", 7 }, { "C", 6 }, { "O", 8 }, { "CX", 6 }, { "OXT", 8 }, { "OQ1", 8 }, { "OQ2", 8 }, { "H", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB2", 1 }, { "HB3", 1 }, { "HG2", 1 }, { "HG3", 1 }, { "HD2", 1 }, { "HD3", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "HZ", 1 }, { "HXT", 1 }, { "HXT", 1 } }, { { "N", "CA" }, { "N", "H" }, { "N", "HN2" }, { "CA", "CB" }, { "CA", "C" }, { "CA", "HA" }, { "CB", "CG" }, { "CB", "HB2" }, { "CB", "HB3" }, { "CG", "CD" }, { "CG", "HG2" }, { "CG", "HG3" }, { "CD", "CE" }, { "CD", "HD2" }, { "CD", "HD3" }, { "CE", "NZ" }, { "CE", "HE2" }, { "CE", "HE3" }, { "NZ", "CX" }, { "NZ", "HZ" }, { "C", "OXT" }, { "CX", "OQ2" }, { "OXT", "HXT" }, { "OQ2", "HQ2" } }, { { "C", "O" }, { "CX", "OQ1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2308: warning: Member H4BData("H4B", { { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "O4", 8 }, { "C4A", 6 }, { "C8A", 6 }, { "N5", 7 }, { "N8", 7 }, { "C6", 6 }, { "C7", 6 }, { "C9", 6 }, { "O9", 8 }, { "C10", 6 }, { "C11", 6 }, { "O10", 8 }, { "HN21", 1 }, { "HN22", 1 }, { "HN3", 1 }, { "HN5", 1 }, { "HN8", 1 }, { "H6", 1 }, { "H71", 1 }, { "H72", 1 }, { "H9", 1 }, { "HO9", 1 }, { "H10", 1 }, { "H111", 1 }, { "H112", 1 }, { "H113", 1 }, { "H113", 1 } }, { { "N1", "C8A" }, { "C2", "N2" }, { "C2", "N3" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" }, { "N3", "HN3" }, { "C4", "C4A" }, { "C4A", "N5" }, { "C8A", "N8" }, { "N5", "C6" }, { "N5", "HN5" }, { "N8", "C7" }, { "N8", "HN8" }, { "C6", "C7" }, { "C6", "C9" }, { "C6", "H6" }, { "C7", "H71" }, { "C7", "H72" }, { "C9", "O9" }, { "C9", "C10" }, { "C9", "H9" }, { "O9", "HO9" }, { "C10", "C11" }, { "C10", "O10" }, { "C10", "H10" }, { "C11", "H111" }, { "C11", "H112" }, { "C11", "H113" }, { "O10", "HO0" } }, { { "N1", "C2" }, { "C4", "O4" }, { "C4A", "C8A" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2329: warning: Member SAMData("SAM", { { "N", 7 }, { "CA", 6 }, { "C", 6 }, { "O", 8 }, { "OXT", 8 }, { "CB", 6 }, { "CG", 6 }, { "SD", 16 }, { "CE", 6 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "N6", 7 }, { "N1", 7 }, { "C2", 6 }, { "N3", 7 }, { "C4", 6 }, { "HN1", 1 }, { "HN2", 1 }, { "HA", 1 }, { "HB1", 1 }, { "HB2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HE1", 1 }, { "HE2", 1 }, { "HE3", 1 }, { "H5'1", 1 }, { "H5'2", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN61", 1 }, { "HN62", 1 }, { "HN62", 1 } }, { { "N", "CA" }, { "N", "HN1" }, { "N", "HN2" }, { "CA", "C" }, { "CA", "CB" }, { "CA", "HA" }, { "C", "OXT" }, { "CB", "CG" }, { "CB", "HB1" }, { "CB", "HB2" }, { "CG", "SD" }, { "CG", "HG1" }, { "CG", "HG2" }, { "SD", "CE" }, { "SD", "C5'" }, { "CE", "HE1" }, { "CE", "HE2" }, { "CE", "HE3" }, { "C5'", "C4'" }, { "C5'", "H5'1" }, { "C5'", "H5'2" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N6" }, { "N6", "HN61" }, { "N6", "HN62" }, { "N1", "C2" }, { "C2", "H2" }, { "N3", "C4" } }, { { "C", "O" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "N1" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2361: warning: Member GNPData("GNP", { { "PG", 15 }, { "O1G", 8 }, { "O2G", 8 }, { "O3G", 8 }, { "N3B", 7 }, { "PB", 15 }, { "O1B", 8 }, { "O2B", 8 }, { "O3A", 8 }, { "PA", 15 }, { "O1A", 8 }, { "O2A", 8 }, { "O5'", 8 }, { "C5'", 6 }, { "C4'", 6 }, { "O4'", 8 }, { "C3'", 6 }, { "O3'", 8 }, { "C2'", 6 }, { "O2'", 8 }, { "C1'", 6 }, { "N9", 7 }, { "C8", 6 }, { "N7", 7 }, { "C5", 6 }, { "C6", 6 }, { "O6", 8 }, { "N1", 7 }, { "C2", 6 }, { "N2", 7 }, { "N3", 7 }, { "C4", 6 }, { "HOG2", 1 }, { "HOG3", 1 }, { "HNB3", 1 }, { "HOB2", 1 }, { "HOA2", 1 }, { "H5'2", 1 }, { "H5'1", 1 }, { "H4'", 1 }, { "H3'", 1 }, { "HO3'", 1 }, { "H2'", 1 }, { "HO2'", 1 }, { "H1'", 1 }, { "H8", 1 }, { "HN1", 1 }, { "HN21", 1 }, { "HN21", 1 } }, { { "PG", "O2G" }, { "PG", "O3G" }, { "PG", "N3B" }, { "O2G", "HOG2" }, { "O3G", "HOG3" }, { "N3B", "PB" }, { "N3B", "HNB3" }, { "PB", "O2B" }, { "PB", "O3A" }, { "O2B", "HOB2" }, { "O3A", "PA" }, { "PA", "O2A" }, { "PA", "O5'" }, { "O2A", "HOA2" }, { "O5'", "C5'" }, { "C5'", "C4'" }, { "C5'", "H5'2" }, { "C5'", "H5'1" }, { "C4'", "O4'" }, { "C4'", "C3'" }, { "C4'", "H4'" }, { "O4'", "C1'" }, { "C3'", "O3'" }, { "C3'", "C2'" }, { "C3'", "H3'" }, { "O3'", "HO3'" }, { "C2'", "O2'" }, { "C2'", "C1'" }, { "C2'", "H2'" }, { "O2'", "HO2'" }, { "C1'", "N9" }, { "C1'", "H1'" }, { "N9", "C8" }, { "N9", "C4" }, { "C8", "H8" }, { "N7", "C5" }, { "C5", "C6" }, { "C6", "N1" }, { "N1", "C2" }, { "N1", "HN1" }, { "C2", "N2" }, { "N2", "HN21" }, { "N2", "HN22" }, { "N3", "C4" } }, { { "PG", "O1G" }, { "PB", "O1B" }, { "PA", "O1A" }, { "C8", "N7" }, { "C5", "C4" }, { "C6", "O6" }, { "C2", "N3" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2394: warning: Member FLCData("FLC", { { "CAC", 6 }, { "CA", 6 }, { "CB", 6 }, { "CBC", 6 }, { "CG", 6 }, { "CGC", 6 }, { "OA1", 8 }, { "OA2", 8 }, { "OB1", 8 }, { "OB2", 8 }, { "OG1", 8 }, { "OG2", 8 }, { "OHB", 8 }, { "HA1", 1 }, { "HA2", 1 }, { "HG1", 1 }, { "HG2", 1 }, { "HG2", 1 } }, { { "CAC", "CA" }, { "CAC", "OA2" }, { "CA", "CB" }, { "CA", "HA1" }, { "CA", "HA2" }, { "CB", "CBC" }, { "CB", "CG" }, { "CB", "OHB" }, { "CBC", "OB2" }, { "CG", "CGC" }, { "CG", "HG1" }, { "CG", "HG2" }, { "CGC", "OG2" }, { "OHB", "HOB" } }, { { "CAC", "OA1" }, { "CBC", "OB1" }, { "CGC", "OG1" } }) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:192: warning: Member swap(UnitCell &lhs, UnitCell &rhs) (function) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elementdata.h:7: warning: Member element_symbols[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elementdata.h:20: warning: Member element_names[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elementdata.h:47: warning: Member element_masses[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elementdata.h:69: warning: Member element_VDW[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elementdata.h:112: warning: Member element_covalent[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/elementdata.h:153: warning: Member element_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuecolors.h:7: warning: Member chain_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuecolors.h:25: warning: Member amino_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuecolors.h:41: warning: Member shapely_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuecolors.h:57: warning: Member secondary_color[][3] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:2431: warning: Member residueDict (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h:16: warning: Member space_group_international_number[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h:55: warning: Member space_group_schoenflies[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h:134: warning: Member space_group_hall_symbol[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h:666: warning: Member space_group_international[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h:1198: warning: Member space_group_international_full[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h:1730: warning: Member space_group_international_short[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h:1822: warning: Member space_group_setting[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/spacegroupdata.h:1884: warning: Member space_group_transforms[] (variable) of namespace Avogadro::Core is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.h:31: warning: Member operator*() (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.h:35: warning: Member begin() (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.h:37: warning: Member end() const (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.h:41: warning: Member operator++() (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/angleiterator.h:43: warning: Member operator!=(const AngleIterator &other) (function) of class Avogadro::Core::AngleIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:96: warning: Member Container (typedef) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:99: warning: Member ValueType (typedef) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:119: warning: Member Array(const size_t n, const ValueType &value=ValueType()) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:124: warning: Member Array(InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:156: warning: Member data() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:158: warning: Member constData() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:160: warning: Member size() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:162: warning: Member max_size() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:164: warning: Member empty() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:166: warning: Member capacity() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:168: warning: Member reserve(const size_t &sz) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:174: warning: Member resize(const size_t &sz, const ValueType &t=ValueType()) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:180: warning: Member clear() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:186: warning: Member begin() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:188: warning: Member end() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:190: warning: Member begin() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:196: warning: Member end() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:202: warning: Member rbegin() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:204: warning: Member rend() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:206: warning: Member rbegin() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:212: warning: Member rend() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:218: warning: Member front() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:224: warning: Member front() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:226: warning: Member back() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:232: warning: Member back() const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:235: warning: Member assign(InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:241: warning: Member assign(size_type n, const value_type &val) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:247: warning: Member push_back(const ValueType &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:253: warning: Member pop_back() (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:259: warning: Member insert(iterator position, const value_type &val) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:265: warning: Member insert(iterator position, size_type n, const value_type &val) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:272: warning: Member insert(iterator position, InputIterator first, InputIterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:278: warning: Member erase(iterator position) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:284: warning: Member erase(iterator first, iterator last) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:290: warning: Member operator[](const std::size_t &idx) const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:295: warning: Member operator[](const std::size_t &idx) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:301: warning: Member at(const std::size_t &idx) const (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:304: warning: Member operator=(const std::vector< OtherT > &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:312: warning: Member operator=(const Array< OtherT > &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:319: warning: Member operator=(const Array &v) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:328: warning: Member swap(Array< ValueType > &other) (function) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:351: warning: Member d (variable) of class Avogadro::Core::Array is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:71: warning: Member m_content (variable) of class Avogadro::Core::ArraySet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:72: warning: Member m_data (variable) of class Avogadro::Core::ArraySet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:62: warning: Member Holder(const ValueType &value) (function) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:64: warning: Member type() const (function) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:66: warning: Member clone() const (function) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:53: warning: Member type() const =0 (function) of class Avogadro::Core::ArraySet::PlaceHolder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:55: warning: Member clone() const =0 (function) of class Avogadro::Core::ArraySet::PlaceHolder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:68: warning: Member m_content (variable) of class Avogadro::Core::ArraySet::Holder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:53: warning: Member type() const =0 (function) of class Avogadro::Core::ArraySet::PlaceHolder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:55: warning: Member clone() const =0 (function) of class Avogadro::Core::ArraySet::PlaceHolder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:742: warning: Member Atom(Molecule *m, Index i) (function) of class Avogadro::Core::Atom is not documented. Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkglwidget.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h... Preprocessing /builddir/build/BUILD/avogadrolibs-1.97.0/docs/mainpage.dox... Parsing file /builddir/build/BUILD/avogadrolibs-1.97.0/docs/mainpage.dox... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Distributing member group documentation. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating file documentation... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound vtkAvogadroActor... Generating concept documentation... Generating namespace documentation... Generating docs for namespace Avogadro Generating docs for compound Avogadro::Frustrum... Generating docs for compound Avogadro::TypeTraits... Generating docs for compound Avogadro::TypeTraits< char >... Generating docs for compound Avogadro::TypeTraits< double >... Generating docs for compound Avogadro::TypeTraits< float >... Generating docs for compound Avogadro::TypeTraits< int >... Generating docs for compound Avogadro::TypeTraits< short >... Generating docs for compound Avogadro::TypeTraits< unsigned char >... Generating docs for compound Avogadro::TypeTraits< unsigned int >... Generating docs for compound Avogadro::TypeTraits< unsigned short >... Generating docs for compound Avogadro::Calc::ChargeManager... Generating docs for compound Avogadro::Calc::ChargeModel... Generating docs for compound Avogadro::Calc::DefaultModel... Generating docs for namespace Avogadro::Core Generating docs for compound Avogadro::Core::AngleIterator... Generating docs for compound Avogadro::Core::Array... Generating docs for compound Avogadro::Core::ArraySet... Generating docs for nested compound Avogadro::Core::ArraySet::Holder... Generating docs for nested compound Avogadro::Core::ArraySet::PlaceHolder... Generating docs for compound Avogadro::Core::Atom... Generating docs for compound Avogadro::Core::AtomTemplate... Generating docs for compound Avogadro::Core::AtomTyper... Generating docs for compound Avogadro::Core::AtomUtilities... Generating docs for compound Avogadro::Core::AvoSpglib... Genera/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:176: warning: Member selected() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:184: warning: Member forceVector() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:186: warning: Member setLabel(const std::string &label) (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:187: warning: Member label() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:117: warning: Member atomicNumber() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:128: warning: Member position2d() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:136: warning: Member position3d() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:144: warning: Member hybridization() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:152: warning: Member formalCharge() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:160: warning: Member color() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:168: warning: Member layer() const (function) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:50: warning: Member MoleculeType (typedef) of class AtomTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:44: warning: explicit link request to 'AtomType' could not be resolved /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:50: warning: Member MoleculeType (typedef) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:176: warning: Member selected() const (function) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:184: warning: Member forceVector() const (function) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:186: warning: Member setLabel(const std::string &label) (function) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:187: warning: Member label() const (function) of class Avogadro::Core::AtomTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper.h:25: warning: Member ValueType (typedef) of class Avogadro::Core::AtomTyper is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper.h:27: warning: Member AtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::AtomTyper is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/basisset.h:80: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:749: warning: Member Bond(Molecule *m, Index i) (function) of class Avogadro::Core::Bond is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:93: warning: Member atom2() const (function) of class BondTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:111: warning: Member order() const (function) of class BondTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:26: warning: Member MoleculeType (typedef) of class BondTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:27: warning: Member AtomType (typedef) of class BondTemplate< Molecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:20: warning: explicit link request to 'BondType' could not be resolved /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:26: warning: Member MoleculeType (typedef) of class Avogadro::Core::BondTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:27: warning: Member AtomType (typedef) of class Avogadro::Core::BondTemplate is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/color3f.h:84: warning: Member m_data[3] (variable) of class Avogadro::Core::Color3f is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h:40: warning: Member setMolecule(const Molecule *mol) (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h:41: warning: Member molecule() const (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateblockgenerator.h:82: warning: Member specification() const (function) of class Avogadro::Core::CoordinateBlockGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:92: warning: Member resize(Index _size) (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:93: warning: Member size() const (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:94: warning: Member coordinates() (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:95: warning: Member coordinates() const (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:100: warning: Member operator[](Index _index) (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:101: warning: Member operator[](Index _index) const (function) of class Avogadro::Core::CoordinateSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:71: warning: Member m_content (variable) of class Avogadro::Core::ArraySet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:72: warning: Member m_data (variable) of class Avogadro::Core::ArraySet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:98: warning: Found unknown command '\index' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:38: warning: Member Options (typedef) of class Avogadro::Core::CrystalTools is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:48: warning: The following parameter of Avogadro::Core::CrystalTools::rotateToStandardOrientation(Molecule &molecule, Options opts=None) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:63: warning: The following parameters of Avogadro::Core::CrystalTools::setVolume(Molecule &molecule, Real newVolume, Options opts=None) are not documented: parameter 'molecule' parameter 'newVolume' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:73: warning: The following parameter of Avogadro::Core::CrystalTools::niggliReduce(Molecule &molecule, Options opts=None) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:95: warning: The following parameter of Avogadro::Core::CrystalTools::buildSupercell(Molecule &molecule, unsigned int a, unsigned int b, unsigned int c) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:107: warning: The following parameters of Avogadro::Core::CrystalTools::setCellMatrix(Molecule &molecule, const Matrix3 &newCellColMatrix, Options opt=None) are not documented: parameter 'molecule' parameter 'newCellColMatrix' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:119: warning: Member data() const (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:222: warning: Member setName(const std::string &name_) (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:223: warning: Member name() const (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:225: warning: Member setCubeType(Type type) (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:226: warning: Member cubeType() const (function) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:234: warning: Member m_data (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:235: warning: Member m_min (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:235: warning: Member m_max (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:235: warning: Member m_spacing (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:236: warning: Member m_points (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:237: warning: Member m_minValue (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:237: warning: Member m_maxValue (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:238: warning: Member m_name (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:239: warning: Member m_cubeType (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:240: warning: Member m_lock (variable) of class Avogadro::Core::Cube is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:189: warning: The following parameter of Avogadro::Core::Cube::setValue(unsigned int i, float value) is not documented: parameter 'value' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.h:31: warning: Member operator*() (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.h:35: warning: Member begin() (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.h:37: warning: Member end() const (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.h:41: warning: Member operator++() (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/dihedraliterator.h:43: warning: Member operator!=(const DihedralIterator &other) (function) of class Avogadro::Core::DihedralIterator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:220: warning: Member symmetry() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:221: warning: Member atomIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:222: warning: Member atomIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:223: warning: Member moIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:224: warning: Member moIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:225: warning: Member gtoIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:226: warning: Member gtoIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:227: warning: Member cIndices() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:228: warning: Member cIndices() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:229: warning: Member gtoA() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:230: warning: Member gtoA() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:231: warning: Member gtoC() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:232: warning: Member gtoC() const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:233: warning: Member gtoCN() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:239: warning: Member moMatrix(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:247: warning: Member moMatrix(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:255: warning: Member moEnergy(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:263: warning: Member moEnergy(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:271: warning: Member moOccupancy(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:279: warning: Member moOccupancy(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:287: warning: Member moNumber(ElectronType type=Paired) (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:295: warning: Member moNumber(ElectronType type=Paired) const (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:303: warning: Member densityMatrix() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussianset.h:304: warning: Member spinDensityMatrix() (function) of class Avogadro::Core::GaussianSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/basisset.h:80: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/gaussiansettools.h:33: warning: Member GaussianSetTools(Molecule *mol=nullptr) (function) of class Avogadro::Core::GaussianSetTools is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layer.h:29: warning: Member addAtom(size_t layer) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layer.h:30: warning: Member addAtom(size_t layer, Index atom) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layer.h:31: warning: Member addAtomToActiveLayer(Index atom) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layer.h:32: warning: Member removeAtom(Index atom) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layer.h:33: warning: Member removeLayer(size_t layer) (function) of class Avogadro::Core::Layer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:32: warning: Member LayerData(std::string save="") (function) of class Avogadro::Core::LayerData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:47: warning: Member boolToString(bool b) (function) of class Avogadro::Core::LayerData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:48: warning: Member stringToBool(std::string b) (function) of class Avogadro::Core::LayerData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:49: warning: Member m_save (variable) of class Avogadro::Core::LayerData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:113: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:114: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:193: warning: Member setLayer(Index atomId, size_t layer) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:194: warning: Member layer(Index atomId) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:254: warning: Member label(Index atomId) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:255: warning: Member setLabel(const Core::Array< std::string > &label) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:256: warning: Member setLabel(Index atomId, const std::string &label) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:289: warning: Member addAtom(unsigned char atomicNumber, Vector3 position3d) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:387: warning: Member mesh(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:388: warning: Member mesh(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:390: warning: Member meshCount() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:392: warning: Member clearMeshes() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:400: warning: Member cube(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:401: warning: Member cube(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:403: warning: Member cubeCount() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:405: warning: Member clearCubes() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:412: warning: Member cubes() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:467: warning: Member basisSet() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:488: warning: Member vibrationFrequencies() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:489: warning: Member setVibrationFrequencies(const Array< double > &freq) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:490: warning: Member vibrationIRIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:491: warning: Member setVibrationIRIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:492: warning: Member vibrationRamanIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:493: warning: Member setVibrationRamanIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:494: warning: Member vibrationLx(int mode) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:495: warning: Member setVibrationLx(const Array< Array< Vector3 > > &lx) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:518: warning: Member coordinate3dCount() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:519: warning: Member setCoordinate3d(int coord) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:520: warning: Member coordinate3d(int index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:521: warning: Member setCoordinate3d(const Array< Vector3 > &coords, int index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:527: warning: Member timeStep(int index, bool &status) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:558: warning: Member addResidue(std::string &name, Index &number, char &id) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:559: warning: Member addResidue(Residue &residue) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:560: warning: Member residue(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:562: warning: Member residues() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:563: warning: Member residues() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:675: warning: Member getAtomBonds(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:676: warning: Member getAtomOrders(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:680: warning: Member removeBonds(Index atom) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:682: warning: Member addBonds(const Array< std::pair< Index, Index > > &bonds, const Array< unsigned char > &orders) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:686: warning: Member swapBond(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:688: warning: Member swapAtom(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:690: warning: Member getAtomsAtLayer(size_t layer) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:692: warning: Member layer() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:693: warning: Member layer() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:678: warning: Member makeBondPair(const Index &a, const Index &b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:696: warning: Member m_data (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:698: warning: Member m_customElementMap (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:701: warning: Member m_positions2d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:702: warning: Member m_positions3d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:703: warning: Member m_label (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:705: warning: Member m_timesteps (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:706: warning: Member m_hybridizations (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:707: warning: Member m_formalCharges (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:708: warning: Member m_forceVectors (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:709: warning: Member m_colors (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:711: warning: Member m_vibrationFrequencies (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:712: warning: Member m_vibrationIRIntensities (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:713: warning: Member m_vibrationRamanIntensities (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:714: warning: Member m_vibrationLx (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:717: warning: Member m_selectedAtoms (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:719: warning: Member m_meshes (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:720: warning: Member m_cubes (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:722: warning: Member m_basisSet (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:723: warning: Member m_unitCell (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:724: warning: Member m_residues (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:727: warning: Member m_hallNumber (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:68: warning: Member MoleculeInfo(const Molecule *m) (function) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:74: warning: Member clear() (function) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:60: warning: Member mol (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:61: warning: Member visible (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:62: warning: Member locked (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:63: warning: Member enable (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:64: warning: Member settings (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:65: warning: Member layer (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:66: warning: Member loaded (variable) of class Avogadro::Core::MoleculeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/nameatomtyper.h:26: warning: Member NameAtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::NameAtomTyper is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper.h:27: warning: Member AtomTyper(const Molecule *mol=nullptr) (function) of class AtomTyper< std::string > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper.h:25: warning: Member ValueType (typedef) of class AtomTyper< std::string > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/neighborperceiver.h:58: warning: Member m_maxDistance (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/neighborperceiver.h:59: warning: Member m_binCount (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/neighborperceiver.h:60: warning: Member m_bins (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/neighborperceiver.h:61: warning: Member m_minPos (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/neighborperceiver.h:62: warning: Member m_maxPos (variable) of class Avogadro::Core::NeighborPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:37: warning: Member SecondaryStructure (enumeration) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:52: warning: Member Residue(std::string &name) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:53: warning: Member Residue(std::string &name, Index &number) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:54: warning: Member Residue(std::string &name, Index &number, char &id) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:56: warning: Member Residue(const Residue &other) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:58: warning: Member operator=(Residue other) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:62: warning: Member residueName() const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:64: warning: Member setResidueName(std::string &name) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:66: warning: Member residueId() const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:68: warning: Member setResidueId(Index &number) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:70: warning: Member chainId() const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:72: warning: Member setChainId(const char &id) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:74: warning: Member secondaryStructure() const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:79: warning: Member setSecondaryStructure(const SecondaryStructure &ss) (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:117: warning: Member hasAtomByIndex(Index index) const (function) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:135: warning: Member m_residueName (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:136: warning: Member m_residueId (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:137: warning: Member m_chainId (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:138: warning: Member m_atomNameMap (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:139: warning: Member m_heterogen (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:140: warning: Member m_color (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:141: warning: Member m_customColorSet (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residue.h:142: warning: Member m_secondaryStructure (variable) of class Avogadro::Core::Residue is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:21: warning: Member ResidueData(std::string name, std::map< std::string, int > atomNames, std::vector< std::pair< std::string, std::string > > singleBonds, std::vector< std::pair< std::string, std::string > > doubleBonds) (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:31: warning: Member ResidueData(const ResidueData &other) (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:39: warning: Member operator=(ResidueData other) (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:46: warning: Member residueAtoms() (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:48: warning: Member residueSingleBonds() (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/residuedata.h:53: warning: Member residueDoubleBonds() (function) of class Avogadro::Core::ResidueData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.h:23: warning: Member RingPerceiver(const Molecule *m=nullptr) (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.h:27: warning: Member setMolecule(const Molecule *m) (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.h:28: warning: Member molecule() const (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ringperceiver.h:31: warning: Member rings() (function) of class Avogadro::Core::RingPerceiver is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.h:38: warning: Member SecondaryStructureAssigner(Molecule *m=nullptr) (function) of class Avogadro::Core::SecondaryStructureAssigner is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/secondarystructure.h:41: warning: Member assign(Molecule *mol) (function) of class Avogadro::Core::SecondaryStructureAssigner is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.h:137: warning: Member slaterTypes() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.h:138: warning: Member zetas() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.h:139: warning: Member factors() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.h:140: warning: Member PQNs() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.h:141: warning: Member normalizedMatrix() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.h:142: warning: Member densityMatrix() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slaterset.h:144: warning: Member outputAll() (function) of class Avogadro::Core::SlaterSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/basisset.h:80: warning: Member molecule() const (function) of class Avogadro::Core::BasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/slatersettools.h:31: warning: Member SlaterSetTools(Molecule *mol=nullptr) (function) of class Avogadro::Core::SlaterSetTools is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/symbolatomtyper.h:26: warning: Member SymbolAtomTyper(const Molecule *mol=nullptr) (function) of class Avogadro::Core::SymbolAtomTyper is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper.h:27: warning: Member AtomTyper(const Molecule *mol=nullptr) (function) of class AtomTyper< std::string > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atomtyper.h:25: warning: Member ValueType (typedef) of class AtomTyper< std::string > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:25: warning: Member UnitCell(Real a, Real b, Real c, Real alpha, Real beta, Real gamma) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:26: warning: Member UnitCell(const Vector3 &a, const Vector3 &b, const Vector3 &c) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:27: warning: Member UnitCell(const Matrix3 &cellMatrix) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:28: warning: Member UnitCell(const UnitCell &other) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:30: warning: Member operator=(UnitCell other) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/unitcell.h:87: warning: Member setFractionalMatrix(const Matrix3 &m) (function) of class Avogadro::Core::UnitCell is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant.h:29: warning: Member Type (enumeration) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant.h:125: warning: Member operator=(const Variant &variant) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:62: warning: Member setValue(bool v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:73: warning: Member setValue(char v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:84: warning: Member setValue(short v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:95: warning: Member setValue(int v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:106: warning: Member setValue(long v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:117: warning: Member setValue(float v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:128: warning: Member setValue(double v) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:139: warning: Member setValue(std::string string) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:150: warning: Member setValue(const char *string) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:156: warning: Member setValue(void *pointer) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:167: warning: Member setValue(MatrixX matrix) (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variant-inline.h:184: warning: Member value() const (function) of class Avogadro::Core::Variant is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variantmap.h:29: warning: Member iterator (typedef) of class Avogadro::Core::VariantMap is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/variantmap.h:30: warning: Member const_iterator (typedef) of class Avogadro::Core::VariantMap is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:25: warning: Member ValueType (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:26: warning: Member Parent (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:29: warning: Member value_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:30: warning: Member allocator_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:31: warning: Member reference (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:32: warning: Member const_reference (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:33: warning: Member pointer (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:34: warning: Member const_pointer (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:35: warning: Member iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:36: warning: Member const_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:37: warning: Member reverse_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:38: warning: Member const_reverse_iterator (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:39: warning: Member difference_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:40: warning: Member size_type (typedef) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:44: warning: Member ArrayRefContainer(const size_t n, const ValueType &value=ValueType()) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:49: warning: Member ArrayRefContainer(const ArrayRefContainer &other) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:53: warning: Member ArrayRefContainer(InputIterator first, InputIterator last) (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:58: warning: Member reref() (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:62: warning: Member deref() (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:69: warning: Member ref() const (function) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:72: warning: Member m_ref (variable) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/array.h:74: warning: Member data (variable) of class Avogadro::Core::internal::ArrayRefContainer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.h:39: warning: Member operator()(const std::string &s1, const std::string &s2) const noexcept (function) of struct Avogadro::Io::CaseInsensitiveComparator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.h:34: warning: Member operator()(const unsigned char &c1, const unsigned char &c2) const (function) of struct Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. ting docs for compound Avogadro::Core::BasisSet... Generating docs for compound Avogadro::Core::Bond... Generating docs for compound Avogadro::Core::BondTemplate... Generating docs for compound Avogadro::Core::Color3f... Generating docs for compound Avogadro::Core::CoordinateBlockGenerator... Generating docs for compound Avogadro::Core::CoordinateSet... Generating docs for compound Avogadro::Core::CrystalTools... Generating docs for compound Avogadro::Core::Cube... Generating docs for compound Avogadro::Core::DihedralIterator... Generating docs for compound Avogadro::Core::Elements... Generating docs for compound Avogadro::Core::GaussianSet... Generating docs for compound Avogadro::Core::GaussianSetTools... Generating docs for compound Avogadro::Core::Graph... Generating docs for compound Avogadro::Core::hBondRecord... Generating docs for compound Avogadro::Core::Layer... Generating docs for compound Avogadro::Core::LayerData... Generating docs for compound Avogadro::Core::LayerManager... Generating docs for compound Avogadro::Core::Mesh... Generating docs for compound Avogadro::Core::Molecule... Generating docs for compound Avogadro::Core::MoleculeDeserializer... Generating docs for compound Avogadro::Core::MoleculeInfo... Generating docs for compound Avogadro::Core::MoleculeSerializer... Generating docs for compound Avogadro::Core::Mutex... Generating docs for compound Avogadro::Core::NameAtomTyper... Generating docs for compound Avogadro::Core::NeighborPerceiver... Generating docs for compound Avogadro::Core::Residue... Generating docs for compound Avogadro::Core::ResidueData... Generating docs for compound Avogadro::Core::RingPerceiver... Generating docs for compound Avogadro::Core::SecondaryStructureAssigner... Generating docs for compound Avogadro::Core::SharedMutex... Generating docs for compound Avogadro::Core::SlaterSet... Generating docs for compound Avogadro::Core::SlaterSetTools... Generating docs for compound Avogadro::Core::SpaceGroups... Generating docs for compound Avogadro::Core::SymbolAtomTyper... Generating docs for compound Avogadro::Core::UnitCell... Generating docs for compound Avogadro::Core::Variant... Generating docs for compound Avogadro::Core::VariantMap... Generating docs for compound Avogadro::Core::internal::ArrayRefContainer... Generating docs for compound Avogadro::Io::CaseInsensitiveComparator... Generating docs for nested compound Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare... Generating docs for compound Avogadro::Io::CjsonFormat... Generating docs for compound Avogadro::Io::CmlFormat... Generating docs for compound Avogadro::Io::DcdFormat... Generating docs for compound Avogadro::Io::FileFormat... Generating docs for compound Avogadro::Io::FileFormatManager... Generating docs for compound Avogadro::Io::GromacsFormat... Generating docs for compound Avogadro::Io::Hdf5DataFormat... Generating docs for compound Avogadro::Io::LammpsDataFormat... Generating docs for compound Avogadro::Io::LammpsTrajectoryFormat... Generating docs for compound Avogadro::Io::MdlFormat... Generating docs for compound Avogadro::Io::MMTFFormat... Generating docs for compound Avogadro::Io::OutcarFormat... Generating docs for compound Avogadro::Io::PdbFormat... Generating docs for compound Avogadro::Io::PoscarFormat... Generating docs for compound Avogadro::Io::TrrFormat... Generating docs for compound Avogadro::Io::TurbomoleFormat... Generating docs for compound Avogadro::Io::XyzFormat... Generating docs for compound Avogadro::MoleQueue::BatchJob... Generating docs for compound Avogadro::MoleQueue::Client... Generating docs for compound Avogadro::MoleQueue::InputGenerator... Generating docs for compound Avogadro::MoleQueue::InputGeneratorDialog... Generating docs for compound Avogadro::MoleQueue::InputGeneratorWidget... Generating docs for compound Avogadro::MoleQueue::JobObject... Generating docs for compound Avogadro::MoleQueue::JsonRpcClient... Generating docs for compound Avogadro::MoleQueue::MoleQueueDialog... Generating docs for compound Avogadro::MoleQueue::MoleQueueManager... Generating docs /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:233: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:244: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:257: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/pdbformat.h:56: warning: Member perceiveSubstitutedCations(Core::Molecule &molecule) (function) of class Avogadro::Io::PdbFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/batchjob.h:82: warning: Member BatchJob(const QString &scriptFilePath, QObject *parent=nullptr) (function) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/batchjob.h:62: warning: Member InvalidBatchId (variable) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/batchjob.h:68: warning: Member InvalidRequestId (variable) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/batchjob.h:75: warning: Member InvalidServerId (variable) of class Avogadro::MoleQueue::BatchJob is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h:38: warning: Member Client(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::Client is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h:227: warning: Member MessageType (enumeration) of class Avogadro::MoleQueue::Client is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h:238: warning: Member m_jsonRpcClient (variable) of class Avogadro::MoleQueue::Client is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h:239: warning: Member m_requests (variable) of class Avogadro::MoleQueue::Client is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h:126: warning: Unsupported xml/html tag found /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgenerator.h:457: warning: Member InputGenerator(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::InputGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgenerator.h:452: warning: The following parameter of Avogadro::MoleQueue::InputGenerator::InputGenerator(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratordialog.h:37: warning: Member InputGeneratorDialog(QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::InputGeneratorDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgeneratordialog.h:38: warning: Member InputGeneratorDialog(const QString &scriptFileName, QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::InputGeneratorDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:68: warning: Member isEmpty() const (function) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:126: warning: Member m_molecule (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:127: warning: Member m_options (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:128: warning: Member m_optionCache (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:129: warning: Member m_dirtyTextEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:131: warning: Member m_empty (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:132: warning: Member m_batchMode (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:133: warning: Member m_currentLayout (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:134: warning: Member m_centralWidget (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:135: warning: Member m_widgets (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:136: warning: Member m_textEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jobobject.h:148: warning: Member m_value (variable) of class Avogadro::MoleQueue::JobObject is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jsonrpcclient.h:48: warning: Member JsonRpcClient(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::JsonRpcClient is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jsonrpcclient.h:136: warning: Member m_packetCounter (variable) of class Avogadro::MoleQueue::JsonRpcClient is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/jsonrpcclient.h:137: warning: Member m_socket (variable) of class Avogadro::MoleQueue::JsonRpcClient is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuedialog.h:153: warning: Member done(int r) override (slot) of class Avogadro::MoleQueue::MoleQueueDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuedialog.h:34: warning: Member MoleQueueDialog(QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::MoleQueueDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuemanager.h:35: warning: Member MoleQueueManager(QObject *parent_=nullptr) (function) of class Avogadro::MoleQueue::MoleQueueManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h:85: warning: Member data(const QModelIndex &idx, int role) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h:86: warning: Member flags(const QModelIndex &idx=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h:87: warning: Member headerData(int section, Qt::Orientation orientation, int role) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h:89: warning: Member index(int row, int column, const QModelIndex &parent_=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h:91: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h:92: warning: Member rowCount(const QModelIndex &parent_=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuequeuelistmodel.h:93: warning: Member columnCount(const QModelIndex &parent_=QModelIndex()) const override (function) of class Avogadro::MoleQueue::MoleQueueQueueListModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuewidget.h:33: warning: Member MoleQueueWidget(QWidget *parent_=nullptr) (function) of class Avogadro::MoleQueue::MoleQueueWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/molequeuewidget.h:127: warning: Member batchMode() const (function) of class Avogadro::MoleQueue::MoleQueueWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h:37: warning: Member ColorButton(QWidget *parent=0) (function) of class Avogadro::QtGui::ColorButton is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h:38: warning: Member ColorButton(const QColor &initial, QWidget *parent=0) (function) of class Avogadro::QtGui::ColorButton is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h:51: warning: argument 'custom' of command @param is not found in the argument list of ColorButton::setDialogTitle(const QString title="") /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h:51: warning: The following parameter of Avogadro::QtGui::ColorButton::setDialogTitle(const QString title="") is not documented: parameter 'title' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:40: warning: Member splitVertical() (signal) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:41: warning: Member splitHorizontal() (signal) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:42: warning: Member closeView() (signal) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:30: warning: Member ContainerWidget(QWidget *parent=nullptr, Qt::WindowFlags f=0) (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:33: warning: Member setViewWidget(QWidget *widget) (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:34: warning: Member viewWidget() (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:36: warning: Member setActive(bool active) (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/containerwidget.h:37: warning: Member isActive() const (function) of class Avogadro::QtGui::ContainerWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/customelementdialog.h:31: warning: Member CustomElementDialog(Molecule &mol, QWidget *parent=nullptr) (function) of class Avogadro::QtGui::CustomElementDialog is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/extensionplugin.h:44: warning: Member ExtensionPlugin(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ExtensionPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:25: warning: Member Mode (enumeration) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:48: warning: Member setFileName(const QString &fname) (slot) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:45: warning: Member fileNameChanged(const QString &filename) (signal) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:31: warning: Member FileBrowseWidget(QWidget *theParent=nullptr) (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:34: warning: Member fileName() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:36: warning: Member validFileName() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:38: warning: Member browseButton() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:39: warning: Member lineEdit() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:41: warning: Member setMode(Mode m) (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/filebrowsewidget.h:42: warning: Member mode() const (function) of class Avogadro::QtGui::FileBrowseWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/generichighlighter.h:91: warning: Member highlightBlock(const QString &text) override (function) of class Avogadro::QtGui::GenericHighlighter is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/hydrogentools.h:77: warning: The following parameters of Avogadro::QtGui::HydrogenTools::generateNewHydrogenPositions(const RWAtom &atom, int numberOfHydrogens, std::vector< Vector3 > &positions) are not documented: parameter 'atom' parameter 'numberOfHydrogens' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacescript.h:611: warning: Member finished() (signal) of class Avogadro::QtGui::InterfaceScript is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacescript.h:456: warning: Member InterfaceScript(QObject *parent_=nullptr) (function) of class Avogadro::QtGui::InterfaceScript is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacescript.h:451: warning: The following parameter of Avogadro::QtGui::InterfaceScript::InterfaceScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:68: warning: Member isEmpty() const (function) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:126: warning: Member m_molecule (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:127: warning: Member m_options (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:128: warning: Member m_optionCache (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:129: warning: Member m_dirtyTextEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:131: warning: Member m_empty (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:132: warning: Member m_batchMode (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:133: warning: Member m_currentLayout (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:134: warning: Member m_centralWidget (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:135: warning: Member m_widgets (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:136: warning: Member m_textEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:68: warning: Member isEmpty() const (function) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:126: warning: Member m_molecule (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:127: warning: Member m_options (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:128: warning: Member m_optionCache (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:129: warning: Member m_dirtyTextEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:131: warning: Member m_empty (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:132: warning: Member m_batchMode (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:133: warning: Member m_currentLayout (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:134: warning: Member m_centralWidget (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:135: warning: Member m_widgets (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/jsonwidget.h:136: warning: Member m_textEdits (variable) of class Avogadro::QtGui::JsonWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:30: warning: Member ColumnType (enumeration) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:67: warning: Member updateRows() (slot) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:39: warning: Member LayerModel(QObject *p=0) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:41: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:42: warning: Member rowCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:43: warning: Member columnCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:45: warning: Member flags(const QModelIndex &index) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:47: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:49: warning: Member data(const QModelIndex &index, int role) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:51: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const override (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:54: warning: Member addItem() (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:55: warning: Member addLayer(RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:56: warning: Member addMolecule(const Molecule *mol) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:57: warning: Member setActiveLayer(int index, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:58: warning: Member removeItem(int row, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:60: warning: Member items() const (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:62: warning: Member flipVisible(size_t row) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:63: warning: Member flipLocked(size_t row) (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/layermodel.h:64: warning: Member layerCount() const (function) of class Avogadro::QtGui::LayerModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.h:29: warning: Member removeLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.h:30: warning: Member addLayer(RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.h:31: warning: Member setActiveLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:113: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:114: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:132: warning: Member duplicate(const Vector3i &c, const Vector3f &pos) (function) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:139: warning: Member m_iso (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:147: warning: Member m_normals (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:148: warning: Member m_indices (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:149: warning: Member m_progmin (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:150: warning: Member m_progmax (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:158: warning: Member a2iVertexOffset[8][3] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:159: warning: Member a2iEdgeConnection[12][2] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:160: warning: Member a2fEdgeDirection[12][3] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:161: warning: Member a2iTetrahedronEdgeConnection[6][2] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:162: warning: Member a2iTetrahedronsInACube[6][4] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:163: warning: Member aiTetrahedronEdgeFlags[16] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:164: warning: Member a2iTetrahedronTriangles[16][7] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:165: warning: Member aiCubeEdgeFlags[256] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:166: warning: Member a2iTriangleConnectionTable[256][16] (variable) of class Avogadro::QtGui::MeshGenerator is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:52: warning: The following parameters of Avogadro::QtGui::MeshGenerator::MeshGenerator(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false, QObject *parent=nullptr) are not documented: parameter 'reverse' parameter 'parent' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:52: warning: found documented return type for Avogadro::QtGui::MeshGenerator::MeshGenerator that does not return anything /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:68: warning: The following parameter of Avogadro::QtGui::MeshGenerator::initialize(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false) is not documented: parameter 'reverse' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:125: warning: The following parameter of Avogadro::QtGui::MeshGenerator::offset(float val1, float val2) is not documented: parameter 'val2' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:48: warning: Member Molecule(QObject *parent_=nullptr) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:96: warning: Member addAtom(unsigned char number, Vector3 position3d, Index uniqueId=MaxIndex) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:133: warning: Member atomUniqueIds() (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:155: warning: Member addBonds(const Core::Array< std::pair< Index, Index > > &bonds, const Core::Array< unsigned char > &orders) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:228: warning: Member bondUniqueIds() (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:230: warning: Member findAtomUniqueId(Index index) const (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:231: warning: Member findBondUniqueId(Index index) const (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:233: warning: Member undoMolecule() (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:235: warning: Member swapBond(Index a, Index b) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:236: warning: Member swapAtom(Index a, Index b) (function) of class Avogadro::QtGui::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:193: warning: Member setLayer(Index atomId, size_t layer) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:194: warning: Member layer(Index atomId) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:254: warning: Member label(Index atomId) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:255: warning: Member setLabel(const Core::Array< std::string > &label) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:256: warning: Member setLabel(Index atomId, const std::string &label) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:289: warning: Member addAtom(unsigned char atomicNumber, Vector3 position3d) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:387: warning: Member mesh(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:388: warning: Member mesh(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:390: warning: Member meshCount() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:392: warning: Member clearMeshes() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:400: warning: Member cube(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:401: warning: Member cube(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:403: warning: Member cubeCount() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:405: warning: Member clearCubes() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:412: warning: Member cubes() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:467: warning: Member basisSet() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:488: warning: Member vibrationFrequencies() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:489: warning: Member setVibrationFrequencies(const Array< double > &freq) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:490: warning: Member vibrationIRIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:491: warning: Member setVibrationIRIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:492: warning: Member vibrationRamanIntensities() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:493: warning: Member setVibrationRamanIntensities(const Array< double > &intensities) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:494: warning: Member vibrationLx(int mode) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:495: warning: Member setVibrationLx(const Array< Array< Vector3 > > &lx) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:518: warning: Member coordinate3dCount() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:519: warning: Member setCoordinate3d(int coord) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:520: warning: Member coordinate3d(int index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:521: warning: Member setCoordinate3d(const Array< Vector3 > &coords, int index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:527: warning: Member timeStep(int index, bool &status) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:558: warning: Member addResidue(std::string &name, Index &number, char &id) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:559: warning: Member addResidue(Residue &residue) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:560: warning: Member residue(Index index) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:562: warning: Member residues() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:563: warning: Member residues() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:675: warning: Member getAtomBonds(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:676: warning: Member getAtomOrders(Index index) const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:680: warning: Member removeBonds(Index atom) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:682: warning: Member addBonds(const Array< std::pair< Index, Index > > &bonds, const Array< unsigned char > &orders) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:686: warning: Member swapBond(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:688: warning: Member swapAtom(Index a, Index b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:690: warning: Member getAtomsAtLayer(size_t layer) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:692: warning: Member layer() (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:693: warning: Member layer() const (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:678: warning: Member makeBondPair(const Index &a, const Index &b) (function) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:696: warning: Member m_data (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:698: warning: Member m_customElementMap (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:701: warning: Member m_positions2d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:702: warning: Member m_positions3d (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:703: warning: Member m_label (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:705: warning: Member m_timesteps (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:706: warning: Member m_hybridizations (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:707: warning: Member m_formalCharges (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:708: warning: Member m_forceVectors (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:709: warning: Member m_colors (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:711: warning: Member m_vibrationFrequencies (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:712: warning: Member m_vibrationIRIntensities (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:713: warning: Member m_vibrationRamanIntensities (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:714: warning: Member m_vibrationLx (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:717: warning: Member m_selectedAtoms (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:719: warning: Member m_meshes (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:720: warning: Member m_cubes (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:722: warning: Member m_basisSet (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:723: warning: Member m_unitCell (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:724: warning: Member m_residues (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/molecule.h:727: warning: Member m_hallNumber (variable) of class Avogadro::Core::Molecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:171: warning: argument 'a' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:171: warning: argument 'b' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:171: warning: The following parameters of Avogadro::QtGui::Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) are not documented: parameter 'atomId1' parameter 'atomId2' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:66: warning: Member setActiveMolecule(QObject *active) (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:67: warning: Member addItem(Avogadro::QtGui::Molecule *item) (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:68: warning: Member removeItem(Avogadro::QtGui::Molecule *item) (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:69: warning: Member itemChanged() (slot) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:63: warning: Member moleculeStateChanged(Avogadro::QtGui::Molecule *) (signal) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:40: warning: Member MoleculeModel(QObject *p=nullptr) (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:42: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:43: warning: Member rowCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:44: warning: Member columnCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:46: warning: Member flags(const QModelIndex &index) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:48: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:50: warning: Member data(const QModelIndex &index, int role) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:52: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const override (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:55: warning: Member clear() (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:57: warning: Member molecules() const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:58: warning: Member activeMolecules() const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:60: warning: Member activeMolecule() const (function) of class Avogadro::QtGui::MoleculeModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:23: warning: Member m_molecule (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:24: warning: Member m_modelView (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:25: warning: Member m_dirty (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/moleculemodel.h:26: warning: Member m_active (variable) of struct Avogadro::QtGui::MoleculeSystem is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:52: warning: Member splitHorizontal() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:53: warning: Member splitVertical() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:54: warning: Member createView() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:55: warning: Member removeView() (slot) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:49: warning: Member activeWidgetChanged(QWidget *widget) (signal) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:33: warning: Member MultiViewWidget(QWidget *parent=nullptr, Qt::WindowFlags f=0) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:36: warning: Member addWidget(QWidget *widget) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:43: warning: Member setActiveWidget(QWidget *widget) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:45: warning: Member setFactory(ViewFactory *factory) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/multiviewwidget.h:46: warning: Member setDefaultView(const QString &viewName) (function) of class Avogadro::QtGui::MultiViewWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/persistentatom.h:24: warning: Member MoleculeType (typedef) of class Avogadro::QtGui::PersistentAtom is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/persistentatom.h:25: warning: Member AtomType (typedef) of class Avogadro::QtGui::PersistentAtom is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/persistentbond.h:24: warning: Member MoleculeType (typedef) of class Avogadro::QtGui::PersistentBond is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/persistentbond.h:25: warning: Member BondType (typedef) of class Avogadro::QtGui::PersistentBond is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pluginlayermanager.h:26: warning: Member PluginLayerManager(const std::string &name="undef") (function) of class Avogadro::QtGui::PluginLayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pluginlayermanager.h:32: warning: Member atomLocked(size_t atom) const (function) of class Avogadro::QtGui::PluginLayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:113: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:114: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:124: warning: Member m_debug (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:125: warning: Member m_pythonInterpreter (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:126: warning: Member m_scriptFilePath (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:127: warning: Member m_errors (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:128: warning: Member m_process (variable) of class Avogadro::QtGui::PythonScript is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:31: warning: argument 'scriptFilePath_' of command @param is not found in the argument list of PythonScript::PythonScript(QObject *parent_=nullptr) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:674: warning: Member RWAtom(RWMolecule *m, Index i) (function) of class Avogadro::QtGui::RWAtom is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:176: warning: Member selected() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:184: warning: Member forceVector() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:186: warning: Member setLabel(const std::string &label) (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:187: warning: Member label() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:117: warning: Member atomicNumber() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:128: warning: Member position2d() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:136: warning: Member position3d() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:144: warning: Member hybridization() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:152: warning: Member formalCharge() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:160: warning: Member color() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:168: warning: Member layer() const (function) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:50: warning: Member MoleculeType (typedef) of class AtomTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:681: warning: Member RWBond(RWMolecule *m, Index i) (function) of class Avogadro::QtGui::RWBond is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:93: warning: Member atom2() const (function) of class BondTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:111: warning: Member order() const (function) of class BondTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:26: warning: Member MoleculeType (typedef) of class BondTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:27: warning: Member AtomType (typedef) of class BondTemplate< RWMolecule > is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.h:29: warning: Member removeLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.h:30: warning: Member addLayer(RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwlayermanager.h:31: warning: Member setActiveLayer(size_t layer, RWMolecule *rwmolecule) (function) of class Avogadro::QtGui::RWLayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:113: warning: Member m_activeMolecule (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/layermanager.h:114: warning: Member m_molToInfo (variable) of class Avogadro::Core::LayerManager is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:75: warning: Member molecule() (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:76: warning: Member molecule() const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:206: warning: Member label(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:207: warning: Member setLabel(Index atomId, const std::string &label, const QString &undoText=QStringLiteral("Change Atom Label")) (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:240: warning: Member setAtomPosition2d(Index, const Vector2 &) (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:241: warning: Member atomPosition2d(Index) (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:242: warning: Member atomPositions2d() const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:297: warning: Member setLayer(Index atomId, size_t layer) (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:298: warning: Member layer(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:655: warning: Member findAtomUniqueId(Index atomId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:656: warning: Member findBondUniqueId(Index bondId) const (function) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:663: warning: Member m_interactive (variable) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:665: warning: Member m_undoStack (variable) of class Avogadro::QtGui::RWMolecule is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:627: warning: The following parameter of Avogadro::QtGui::RWMolecule::setForceVector(Index atomId, const Vector3 &pos, const QString &undoText=QStringLiteral("Change Force Vectors")) is not documented: parameter 'atomId' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule_undo.h:29: warning: Member UndoCommand(RWMolecule &m) (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule_undo.h:34: warning: Member positions3d() (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule_undo.h:35: warning: Member atomUniqueIds() (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule_undo.h:36: warning: Member bondUniqueIds() (function) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule_undo.h:38: warning: Member m_mol (variable) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule_undo.h:39: warning: Member m_molecule (variable) of class Avogadro::QtGui::RWMolecule::UndoCommand is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h:90: warning: Member drawablesChanged() (signal) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h:42: warning: Member ScenePlugin(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h:51: warning: Member processEditable(const RWMolecule &molecule, Rendering::GroupNode &node) (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h:80: warning: Member setupWidget() (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h:87: warning: Member defaultBehavior() const (function) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/sceneplugin.h:93: warning: Member m_layerManager (variable) of class Avogadro::QtGui::ScenePlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:55: warning: Member addItem(Avogadro::QtGui::ScenePlugin *item) (slot) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:56: warning: Member removeItem(Avogadro::QtGui::ScenePlugin *item) (slot) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:57: warning: Member itemChanged() (slot) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:51: warning: Member pluginStateChanged(Avogadro::QtGui::ScenePlugin *) (signal) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:52: warning: Member pluginConfigChanged() (signal) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:30: warning: Member ScenePluginModel(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:32: warning: Member parent(const QModelIndex &child) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:33: warning: Member rowCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:34: warning: Member columnCount(const QModelIndex &parent) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:36: warning: Member flags(const QModelIndex &index) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. for compound Avogadro::MoleQueue::MoleQueueQueueListModel... Generating docs for compound Avogadro::MoleQueue::MoleQueueWidget... Generating docs for compound Avogadro::QtGui::BackgroundFileFormat... Generating docs for compound Avogadro::QtGui::ColorButton... Generating docs for compound Avogadro::QtGui::ContainerWidget... Generating docs for compound Avogadro::QtGui::CustomElementDialog... Generating docs for compound Avogadro::QtGui::ElementDetail... Generating docs for compound Avogadro::QtGui::ElementItem... Generating docs for compound Avogadro::QtGui::ElementTranslator... Generating docs for compound Avogadro::QtGui::ExtensionPlugin... Generating docs for compound Avogadro::QtGui::ExtensionPluginFactory... Generating docs for compound Avogadro::QtGui::FileBrowseWidget... Generating docs for compound Avogadro::QtGui::FileFormatDialog... Generating docs for compound Avogadro::QtGui::GenericHighlighter... Generating docs for nested compound Avogadro::QtGui::GenericHighlighter::Rule... Generating docs for compound Avogadro::QtGui::HydrogenTools... Generating docs for compound Avogadro::QtGui::InterfaceScript... Generating docs for compound Avogadro::QtGui::InterfaceWidget... Generating docs for compound Avogadro::QtGui::JsonWidget... Generating docs for compound Avogadro::QtGui::LayerModel... Generating docs for compound Avogadro::QtGui::MeshGenerator... Generating docs for compound Avogadro::QtGui::Molecule... Generating docs for compound Avogadro::QtGui::MoleculeModel... Generating docs for compound Avogadro::QtGui::MoleculeSystem... Generating docs for compound Avogadro::QtGui::MultiViewWidget... Generating docs for compound Avogadro::QtGui::PeriodicTableScene... Generating docs for compound Avogadro::QtGui::PeriodicTableView... Generating docs for compound Avogadro::QtGui::PersistentAtom... Generating docs for compound Avogadro::QtGui::PersistentBond... Generating docs for compound Avogadro::QtGui::PluginLayerManager... Generating docs for compound Avogadro::QtGui::PythonScript... Generating docs for compound Avogadro::QtGui::RWAtom... Generating docs for compound Avogadro::QtGui::RWBond... Generating docs for compound Avogadro::QtGui::RWLayerManager... Generating docs for compound Avogadro::QtGui::RWMolecule... Generating docs for nested compound Avogadro::QtGui::RWMolecule::UndoCommand... Generating docs for compound Avogadro::QtGui::ScenePlugin... Generating docs for compound Avogadro::QtGui::ScenePluginFactory... Generating docs for compound Avogadro::QtGui::ScenePluginModel... Generating docs for compound Avogadro::QtGui::ScriptLoader... Generating docs for compound Avogadro::QtGui::ToolPlugin... Generating docs for compound Avogadro::QtGui::ToolPluginFactory... Generating docs for compound Avogadro::QtGui::ViewFactory... Generating docs for compound Avogadro::QtOpenGL::ActiveObjects... Generating docs for compound Avogadro::QtOpenGL::GLWidget... Generating docs for compound Avogadro::QtOpenGL::QtTextRenderStrategy... Generating docs for compound Avogadro::QuantumIO::GamessukOut... Generating docs for compound Avogadro::QuantumIO::GAMESSUSOutput... Generating docs for compound Avogadro::QuantumIO::GaussianCube... Generating docs for compound Avogadro::QuantumIO::GaussianFchk... Generating docs for compound Avogadro::QuantumIO::GUKBasisSet... Generating docs for compound Avogadro::QuantumIO::MoldenFile... Generating docs for compound Avogadro::QuantumIO::MopacAux... Generating docs for compound Avogadro::QuantumIO::NWChemJson... Generating docs for compound Avogadro::QuantumIO::NWChemLog... Generating docs for compound Avogadro::Rendering::AmbientOcclusionSphereGeometry... Generating docs for compound Avogadro::Rendering::ArrowGeometry... Generating docs for compound Avogadro::Rendering::BezierGeometry... Generating docs for compound Avogadro::Rendering::BSplineGeometry... Generating docs for compound Avogadro::Rendering::BufferObject... Generating docs for compound Avogadro::Rendering::Camera... Generating docs for compound Avogadro::Rendering::Cartoon... Generating docs for compound Avogadro::Rendering::Colo/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:38: warning: Member setData(const QModelIndex &index, const QVariant &value, int role) override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:40: warning: Member data(const QModelIndex &index, int role) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:42: warning: Member index(int row, int column, const QModelIndex &parent=QModelIndex()) const override (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:45: warning: Member clear() (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:47: warning: Member scenePlugins() const (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scenepluginmodel.h:48: warning: Member activeScenePlugins() const (function) of class Avogadro::QtGui::ScenePluginModel is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scriptloader.h:35: warning: Member ScriptLoader(QObject *parent_=nullptr) (function) of class Avogadro::QtGui::ScriptLoader is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/scriptloader.h:44: warning: Member queryProgramName(const QString &scriptFilePath, QString &displayName) (function) of class Avogadro::QtGui::ScriptLoader is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h:111: warning: Member setEditMolecule(QtGui::RWMolecule *) (slot) of class Avogadro::QtGui::ToolPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h:44: warning: Member ToolPlugin(QObject *parent=nullptr) (function) of class Avogadro::QtGui::ToolPlugin is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h:140: warning: Member createInstance(QObject *parent=nullptr)=0 (function) of class Avogadro::QtGui::ToolPluginFactory is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/toolplugin.h:141: warning: Member identifier() const =0 (function) of class Avogadro::QtGui::ToolPluginFactory is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:105: warning: Member rendererInvalid() (signal) of class Avogadro::QtOpenGL::GLWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/glwidget.h:49: warning: Member GLWidget(QWidget *parent=nullptr) (function) of class Avogadro::QtOpenGL::GLWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:80: warning: Member GamessukOut(const QString &filename, GaussianSet *basis) (function) of class Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:82: warning: Member GamessukOutNoQt(const std::string &filename, GaussianSet *basis) (function) of class Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:83: warning: Member outputParsedData() (function) of class Avogadro::QuantumIO::GamessukOut is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gaussianfchk.h:52: warning: Member outputAll() (function) of class Avogadro::QuantumIO::GaussianFchk is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:37: warning: Member outputCoord() (function) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:38: warning: Member outputBasis() (function) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:51: warning: Member atomLabels (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:52: warning: Member coordinates (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:54: warning: Member shellLabels (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:55: warning: Member shells (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:58: warning: Member gtoIndicies (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:62: warning: Member gtoExponents (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:63: warning: Member gtoCoefficients (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:66: warning: Member moEnergies (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:68: warning: Member moVectors (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:72: warning: Member nShell (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:73: warning: Member nBasisFunctions (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/gamessukout.h:74: warning: Member nElectrons (variable) of class Avogadro::QuantumIO::GUKBasisSet is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/mopacaux.h:23: warning: Member outputAll() (function) of class Avogadro::QuantumIO::MopacAux is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/nwchemlog.h:24: warning: Member outputAll() (function) of class Avogadro::QuantumIO::NWChemLog is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformat.h:61: warning: Member Operations (typedef) of class Avogadro::Io::FileFormat is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.h:37: warning: Member AmbientOcclusionSphereGeometry(const AmbientOcclusionSphereGeometry &other) (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.h:40: warning: Member operator=(AmbientOcclusionSphereGeometry) (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ambientocclusionspheregeometry.h:81: warning: Member spheres() const (function) of class Avogadro::Rendering::AmbientOcclusionSphereGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.h:28: warning: Member ArrowGeometry(const ArrowGeometry &other) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.h:31: warning: Member operator=(ArrowGeometry) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.h:50: warning: Member drawLine(const Vector3f &start, const Vector3f &end, double lineWidth) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.h:51: warning: Member drawCone(const Vector3f &base, const Vector3f &cap, double baseRadius, double) (function) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/arrowgeometry.h:25: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::ArrowGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/beziergeometry.h:20: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const override (function) of class Avogadro::Rendering::BezierGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:94: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:95: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const =0 (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:97: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:99: warning: Member computeScale(size_t index, float t, float scale) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:101: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:69: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:81: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:83: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:85: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:88: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:89: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:90: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:91: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:92: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h:18: warning: Member BSplineGeometry(bool flat) (function) of class Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:69: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:81: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:83: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h:21: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const override (function) of class Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:94: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:95: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const =0 (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:97: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:99: warning: Member computeScale(size_t index, float t, float scale) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:101: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:85: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:88: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:89: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:90: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:91: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:92: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:31: warning: Member ObjectType (enumeration) of class Avogadro::Rendering::BufferObject is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bufferobject.h:37: warning: Member BufferObject(ObjectType type=ArrayBuffer) (function) of class Avogadro::Rendering::BufferObject is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/camera.h:44: warning: Member Camera(const Camera &o) (function) of class Avogadro::Rendering::Camera is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/camera.h:45: warning: Member operator=(const Camera &o) (function) of class Avogadro::Rendering::Camera is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:29: warning: Member Cartoon(float minRadius, float maxRadius) (function) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:32: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, size_t group, size_t id, Core::Residue::SecondaryStructure sec) (function) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h:18: warning: Member BSplineGeometry(bool flat) (function) of class Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:69: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:81: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:83: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:30: warning: Member ELIPSE_RATIO (variable) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:85: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:37: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const override (function) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:41: warning: Member computeScale(size_t index, float t, float scale) const override (function) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/bsplinegeometry.h:21: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const override (function) of class Avogadro::Rendering::BSplineGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:94: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:95: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const =0 (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:97: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:99: warning: Member computeScale(size_t index, float t, float scale) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:101: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:43: warning: Member m_type (variable) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:44: warning: Member m_minRadius (variable) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cartoongeometry.h:44: warning: Member m_maxRadius (variable) of class Avogadro::Rendering::Cartoon is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:88: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:89: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:90: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:91: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:92: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:75: warning: Member ColorNormalVertex(const Vector3ub &c, const Vector3f &n, const Vector3f &v) (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:79: warning: Member colorOffset() (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:80: warning: Member normalOffset() (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:84: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:69: warning: Member color (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:70: warning: Member unusedAlign (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:71: warning: Member normal (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:72: warning: Member vertex (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:73: warning: Member padding[4] (variable) of struct Avogadro::Rendering::ColorNormalVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:48: warning: Member ColorTextureVertex(const Vector3f &p, const Vector3ub &c, const Vector2f &t, const Vector2f &t2=Vector2f::Zero()) (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:53: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:54: warning: Member colorOffset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:55: warning: Member textureCoordOffset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:60: warning: Member textureCoord2Offset() (function) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:42: warning: Member vertex (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:43: warning: Member color (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:44: warning: Member unusedAlign (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:45: warning: Member textureCoord (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:46: warning: Member textureCoord2 (variable) of struct Avogadro::Rendering::ColorTextureVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:69: warning: Member CurveGeometry(bool flat) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:81: warning: Member addPoint(const Vector3f &pos, const Vector3ub &color, float radius, size_t group, size_t id) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:83: warning: Member lines() const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:85: warning: Member SKIPPED (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:94: warning: Member update(int index) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:95: warning: Member computeCurvePoint(float t, const std::list< Point * > &points) const =0 (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:97: warning: Member computeCirclePoints(const Eigen::Affine3f &a, const Eigen::Affine3f &b, bool flat) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:99: warning: Member computeScale(size_t index, float t, float scale) const (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:101: warning: Member processShaderError(bool error) (function) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:88: warning: Member m_lines (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:89: warning: Member m_indexMap (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:90: warning: Member m_shaderInfo (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:91: warning: Member m_dirty (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:92: warning: Member m_canBeFlat (variable) of class Avogadro::Rendering::CurveGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:123: warning: Member position() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:124: warning: Member setPosition(const Vector3f &pos) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:126: warning: Member direction() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:127: warning: Member setDirection(const Vector3f &dir) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:129: warning: Member length() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:130: warning: Member setLength(float l) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:132: warning: Member radius() const (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:133: warning: Member setRadius(float r) (function) of class Avogadro::Rendering::Cylinder is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:76: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:81: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:82: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:84: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:85: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:18: warning: Member CylinderColor(const Vector3f &pos1, const Vector3f &pos2, float r, const Vector3ub &c, const Vector3ub &c2=Vector3ub::Zero()) (function) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:27: warning: Member end1 (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:28: warning: Member end2 (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:29: warning: Member radius (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:30: warning: Member color (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:31: warning: Member color2 (variable) of struct Avogadro::Rendering::CylinderColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:45: warning: Member CylinderGeometry(const CylinderGeometry &other) (function) of class Avogadro::Rendering::CylinderGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:48: warning: Member operator=(CylinderGeometry) (function) of class Avogadro::Rendering::CylinderGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/cylindergeometry.h:127: warning: Member cylinders() const (function) of class Avogadro::Rendering::CylinderGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:38: warning: Member DashedLineGeometry(const DashedLineGeometry &other) (function) of class Avogadro::Rendering::DashedLineGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:41: warning: Member operator=(DashedLineGeometry) (function) of class Avogadro::Rendering::DashedLineGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'color' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:30: warning: Member PackedVertex(const Vector3f &v, const Vector4ub &c) (function) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:33: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:34: warning: Member colorOffset() (function) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:27: warning: Member vertex (variable) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:28: warning: Member color (variable) of struct Avogadro::Rendering::DashedLineGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/camera.h:29: warning: Member projection (variable) of struct Avogadro::Rendering::EigenData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/camera.h:30: warning: Member modelView (variable) of struct Avogadro::Rendering::EigenData is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometrynode.h:70: warning: Member drawables() const (function) of class Avogadro::Rendering::GeometryNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometrynode.h:99: warning: Member m_drawables (variable) of class Avogadro::Rendering::GeometryNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:38: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:39: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:40: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:41: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:42: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:43: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:44: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:45: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:46: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:47: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/geometryvisitor.h:48: warning: Member visit(LineStripGeometry &) override (function) of class Avogadro::Rendering::GeometryVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:47: warning: Member visit(GroupNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:48: warning: Member visit(GeometryNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:49: warning: Member visit(Drawable &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:50: warning: Member visit(SphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:52: warning: Member visit(CurveGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:53: warning: Member visit(CylinderGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:54: warning: Member visit(MeshGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:55: warning: Member visit(TextLabel2D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:56: warning: Member visit(TextLabel3D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:57: warning: Member visit(LineStripGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:80: warning: Member camera() (function) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:84: warning: Member overlayCamera() (function) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrenderer.h:88: warning: Member scene() (function) of class Avogadro::Rendering::GLRenderer is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:30: warning: Member GLRenderVisitor(const Camera &camera=Camera(), const TextRenderStrategy *trs=nullptr) (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:47: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:48: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:49: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:50: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:52: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:53: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:54: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:55: warning: Member visit(TextLabel2D &geometry) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:56: warning: Member visit(TextLabel3D &geometry) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:57: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:59: warning: Member setCamera(const Camera &camera_) (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/glrendervisitor.h:60: warning: Member camera() const (function) of class Avogadro::Rendering::GLRenderVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:47: warning: Member visit(GroupNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:48: warning: Member visit(GeometryNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:49: warning: Member visit(Drawable &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:50: warning: Member visit(SphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:52: warning: Member visit(CurveGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:53: warning: Member visit(CylinderGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:54: warning: Member visit(MeshGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:55: warning: Member visit(TextLabel2D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:56: warning: Member visit(TextLabel3D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:57: warning: Member visit(LineStripGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:28: warning: Member NodeType (enumeration) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:43: warning: Member GroupNode(GroupNode *parent=nullptr) (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:96: warning: Member children() const (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:109: warning: Member clear(NodeType type) (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:110: warning: Member m_children (variable) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:54: warning: The following parameter of Avogadro::Rendering::GroupNode::addChild(Node *node, NodeType ui=NodeType::GEOMETRY) is not documented: parameter 'ui' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:38: warning: Member NodeInfo(Node *n, NodeType u) (function) of struct Avogadro::Rendering::GroupNode::NodeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:39: warning: Member ui (variable) of struct Avogadro::Rendering::GroupNode::NodeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:40: warning: Member node (variable) of struct Avogadro::Rendering::GroupNode::NodeInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:27: warning: Member operator==(const Identifier &other) const (function) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:33: warning: Member operator!=(const Identifier &other) const (function) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:35: warning: Member isValid() const (function) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:37: warning: Member molecule (variable) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:38: warning: Member type (variable) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:39: warning: Member index (variable) of struct Avogadro::Rendering::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:41: warning: Member Line(float r) (function) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:49: warning: Member add(Point *point) (function) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:54: warning: Member points (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:55: warning: Member dirty (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:56: warning: Member flat (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:57: warning: Member radius (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:58: warning: Member vbo (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:59: warning: Member ibo (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:60: warning: Member order (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:61: warning: Member numberOfVertices (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:62: warning: Member numberOfIndices (variable) of struct Avogadro::Rendering::Line is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:41: warning: Member LineStripGeometry(const LineStripGeometry &other) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:44: warning: Member operator=(LineStripGeometry) (function) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:38: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::LineStripGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:64: warning: argument 'color' of command @param is not found in the argument list of LineStripGeometry::addLineStrip(const Core::Array< Vector3f > &vertices, float lineWidth) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:30: warning: Member PackedVertex(const Vector3f &v, const Vector4ub &c) (function) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:34: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:35: warning: Member colorOffset() (function) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:27: warning: Member vertex (variable) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:28: warning: Member color (variable) of struct Avogadro::Rendering::LineStripGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:49: warning: Member MeshGeometry(const MeshGeometry &other) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:52: warning: Member operator=(MeshGeometry) (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:138: warning: Member vertices() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:139: warning: Member triangles() (function) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:46: warning: Member InvalidIndex (variable) of class Avogadro::Rendering::MeshGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:67: warning: argument 'colors' of command @param is not found in the argument list of MeshGeometry::addVertices(const Core::Array< Vector3f > &vertices, const Core::Array< Vector3f > &normals) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:32: warning: Member PackedVertex(const Vector4ub &c, const Vector3f &n, const Vector3f &v) (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:38: warning: Member colorOffset() (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:39: warning: Member normalOffset() (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:40: warning: Member vertexOffset() (function) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:27: warning: Member color (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:28: warning: Member normal (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:29: warning: Member vertex (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:30: warning: Member padding[4] (variable) of struct Avogadro::Rendering::MeshGeometry::PackedVertex is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:30: warning: Member Point(const Vector3f &p, const Vector3ub &c, size_t i) (function) of struct Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:33: warning: Member pos (variable) of struct Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:34: warning: Member color (variable) of struct Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:35: warning: Member id (variable) of struct Avogadro::Rendering::Point is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:29: warning: Member POVRayVisitor(const Camera &camera) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:32: warning: Member begin() (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:33: warning: Member end() (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:39: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:40: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:41: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:42: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:43: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:44: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:45: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:46: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:47: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:48: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:49: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:51: warning: Member setCamera(const Camera &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:52: warning: Member camera() const (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:54: warning: Member setBackgroundColor(const Vector3ub &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:55: warning: Member setAmbientColor(const Vector3ub &c) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/povrayvisitor.h:56: warning: Member setAspectRatio(float ratio) (function) of class Avogadro::Rendering::POVRayVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:47: warning: Member visit(GroupNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:48: warning: Member visit(GeometryNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:49: warning: Member visit(Drawable &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:50: warning: Member visit(SphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:52: warning: Member visit(CurveGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:53: warning: Member visit(CylinderGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:54: warning: Member visit(MeshGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:55: warning: Member visit(TextLabel2D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:56: warning: Member visit(TextLabel3D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:57: warning: Member visit(LineStripGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:76: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:81: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:82: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:84: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:85: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:58: warning: Member operator==(const Identifier &other) const (function) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:64: warning: Member operator!=(const Identifier &other) const (function) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:69: warning: Member isValid() const (function) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:71: warning: Member molecule (variable) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:72: warning: Member type (variable) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:73: warning: Member index (variable) of struct Avogadro::Rendering::Primitive::Identifier is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/scene.h:108: warning: Member rootNode() const (function) of class Avogadro::Rendering::Scene is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.h:37: warning: Member Shader(Type type=Unknown, const std::string &source="") (function) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.h:70: warning: Member m_type (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.h:71: warning: Member m_handle (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.h:72: warning: Member m_dirty (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.h:74: warning: Member m_source (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shader.h:75: warning: Member m_error (variable) of class Avogadro::Rendering::Shader is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:23: warning: Member vertexShader (variable) of struct Avogadro::Rendering::ShaderInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:24: warning: Member fragmentShader (variable) of struct Avogadro::Rendering::ShaderInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/curvegeometry.h:25: warning: Member program (variable) of struct Avogadro::Rendering::ShaderInfo is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:147: warning: Member setUniformValue(const std::string &name, const Eigen::Matrix4f &matrix) (function) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:156: warning: Member setAttributeArrayInternal(const std::string &name, void *buffer, Avogadro::Type type, int tupleSize, NormalizeOption normalize) (function) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:159: warning: Member m_handle (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:160: warning: Member m_vertexShader (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:161: warning: Member m_fragmentShader (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:163: warning: Member m_linked (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:165: warning: Member m_error (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:167: warning: Member m_attributes (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:169: warning: Member m_textureUnitBindings (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/shaderprogram.h:170: warning: Member m_boundTextureUnits (variable) of class Avogadro::Rendering::ShaderProgram is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:95: warning: Member Sphere(const Vector3f &position_, float radius_, Primitive::Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:101: warning: Member position() const (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:102: warning: Member setPosition(const Vector3f &pos) (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:104: warning: Member radius() const (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:105: warning: Member setRadius(float r) (function) of class Avogadro::Rendering::Sphere is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:76: warning: Member Primitive(Identifier id, const Vector3ub &color_) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:81: warning: Member identifier() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:82: warning: Member setIdentifier(Identifier id) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:84: warning: Member color() const (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/primitive.h:85: warning: Member setColor(const Vector3ub &c) (function) of class Avogadro::Rendering::Primitive is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h:19: warning: Member SphereColor(Vector3f centre, float r, Vector3ub c) (function) of struct Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h:22: warning: Member center (variable) of struct Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h:23: warning: Member radius (variable) of struct Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h:24: warning: Member color (variable) of struct Avogadro::Rendering::SphereColor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h:43: warning: Member SphereGeometry(const SphereGeometry &other) (function) of class Avogadro::Rendering::SphereGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h:46: warning: Member operator=(SphereGeometry) (function) of class Avogadro::Rendering::SphereGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/spheregeometry.h:101: warning: Member spheres() const (function) of class Avogadro::Rendering::SphereGeometry is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:31: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:34: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:73: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:74: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:77: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:78: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:80: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:67: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:68: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:69: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:70: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:31: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:34: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:73: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:74: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:77: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:78: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:80: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:67: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:68: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:69: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:70: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:31: warning: Member TextLabelBase(const TextLabelBase &other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:34: warning: Member operator=(TextLabelBase other) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:73: warning: Member setAnchorInternal(const Vector3f &anchor) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:74: warning: Member getAnchorInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:77: warning: Member setRadiusInternal(float radius) (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:78: warning: Member getRadiusInternal() const (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:80: warning: Member markDirty() (function) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:67: warning: Member m_text (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:68: warning: Member m_textProperties (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:69: warning: Member m_imageDimensions (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textlabelbase.h:70: warning: Member m_imageRgba (variable) of class Avogadro::Rendering::TextLabelBase is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:60: warning: Member TextProperties(const TextProperties &other) (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:63: warning: Member operator=(TextProperties other) (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:64: warning: Member swap(TextProperties &other) (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:66: warning: Member operator==(const TextProperties &other) const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:67: warning: Member operator!=(const TextProperties &other) const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:76: warning: Member pixelHeight() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:83: warning: Member hAlign() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:90: warning: Member vAlign() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:102: warning: Member rotationDegreesCW() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:109: warning: Member fontFamily() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:116: warning: Member fontStyles() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:123: warning: Member bold() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:130: warning: Member italic() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/textproperties.h:137: warning: Member underline() const (function) of class Avogadro::Rendering::TextProperties is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.h:113: warning: Member minFilter() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.h:114: warning: Member setMagFilter(FilterOption opt) (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.h:115: warning: Member magFilter() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.h:157: warning: Member release() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/texture2d.h:159: warning: Member error() const (function) of class Avogadro::Rendering::Texture2D is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/transformnode.h:25: warning: Member TransformNode(GroupNode *parent=nullptr) (function) of class Avogadro::Rendering::TransformNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:43: warning: Member GroupNode(GroupNode *parent=nullptr) (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:96: warning: Member children() const (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:43: warning: Member parent() (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:64: warning: Member cast() const (function) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:28: warning: Member NodeType (enumeration) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:109: warning: Member clear(NodeType type) (function) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:110: warning: Member m_children (variable) of class Avogadro::Rendering::GroupNode is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:75: warning: Member m_parent (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/node.h:76: warning: Member m_visible (variable) of class Avogadro::Rendering::Node is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:47: warning: Member visit(GroupNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:48: warning: Member visit(GeometryNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:49: warning: Member visit(Drawable &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:50: warning: Member visit(SphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:52: warning: Member visit(CurveGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:53: warning: Member visit(CylinderGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:54: warning: Member visit(MeshGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:55: warning: Member visit(TextLabel2D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:56: warning: Member visit(TextLabel3D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:57: warning: Member visit(LineStripGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:40: warning: Member Drawable(const Drawable &other) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:43: warning: Member operator=(Drawable) (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:56: warning: Member parent() (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:90: warning: Member identifier() const (function) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:124: warning: Member m_parent (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:125: warning: Member m_visible (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:126: warning: Member m_renderPass (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/drawable.h:127: warning: Member m_identifier (variable) of class Avogadro::Rendering::Drawable is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:29: warning: Member VRMLVisitor(const Camera &camera) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:32: warning: Member begin() (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:33: warning: Member end() (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:39: warning: Member visit(GroupNode &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:40: warning: Member visit(GeometryNode &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:41: warning: Member visit(Drawable &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:42: warning: Member visit(SphereGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:43: warning: Member visit(AmbientOcclusionSphereGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:44: warning: Member visit(CurveGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:45: warning: Member visit(CylinderGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:46: warning: Member visit(MeshGeometry &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:47: warning: Member visit(TextLabel2D &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:48: warning: Member visit(TextLabel3D &) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:49: warning: Member visit(LineStripGeometry &geometry) override (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:51: warning: Member setCamera(const Camera &c) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:52: warning: Member camera() const (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:54: warning: Member setBackgroundColor(const Vector3ub &c) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:55: warning: Member setAmbientColor(const Vector3ub &c) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/vrmlvisitor.h:56: warning: Member setAspectRatio(float ratio) (function) of class Avogadro::Rendering::VRMLVisitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:47: warning: Member visit(GroupNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:48: warning: Member visit(GeometryNode &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:49: warning: Member visit(Drawable &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:50: warning: Member visit(SphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:51: warning: Member visit(AmbientOcclusionSphereGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:52: warning: Member visit(CurveGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:53: warning: Member visit(CylinderGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:54: warning: Member visit(MeshGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:55: warning: Member visit(TextLabel2D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:56: warning: Member visit(TextLabel3D &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/visitor.h:57: warning: Member visit(LineStripGeometry &) (function) of class Avogadro::Rendering::Visitor is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkglwidget.h:47: warning: Member vtkGLWidget(QWidget *p=nullptr, Qt::WindowFlags f=Qt::WindowFlags()) (function) of class Avogadro::VTK::vtkGLWidget is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:38: warning: Member Axis (enumeration) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:45: warning: Member LineStyle (enumeration) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:57: warning: Member setData(const std::vector< std::vector< double > > &data) (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:58: warning: Member setWindowName(const char *windowName) (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:59: warning: Member setXTitle(const char *xTitle) (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:60: warning: Member setYTitle(const char *yTitle) (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:64: warning: Member setLineLabels(const std::vector< std::string > &labels) (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:68: warning: Member setLineColors(const std::vector< std::array< double, 4 > > &colors) (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:72: warning: Member setLineStyles(const std::vector< LineStyle > &styles) (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:77: warning: Member show() (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:80: warning: Member setCustomTickLabels(Axis axis, const std::vector< double > &customTickPositions, const std::vector< std::string > &customTickLabels) (function) of class Avogadro::VTK::VtkPlot is not documented. /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/vtkplot.h:85: warning: Member setAxisLimits(Axis axis, double min, double max) (function) of class Avogadro::VTK::VtkPlot is not documented. rNormalVertex... Generating docs for compound Avogadro::Rendering::ColorTextureVertex... Generating docs for compound Avogadro::Rendering::CurveGeometry... Generating docs for compound Avogadro::Rendering::Cylinder... Generating docs for compound Avogadro::Rendering::CylinderColor... Generating docs for compound Avogadro::Rendering::CylinderGeometry... Generating docs for compound Avogadro::Rendering::DashedLineGeometry... Generating docs for nested compound Avogadro::Rendering::DashedLineGeometry::PackedVertex... Generating docs for compound Avogadro::Rendering::Drawable... Generating docs for compound Avogadro::Rendering::EigenData... Generating docs for compound Avogadro::Rendering::GeometryNode... Generating docs for compound Avogadro::Rendering::GeometryVisitor... Generating docs for compound Avogadro::Rendering::GLRenderer... Generating docs for compound Avogadro::Rendering::GLRenderVisitor... Generating docs for compound Avogadro::Rendering::GroupNode... Generating docs for nested compound Avogadro::Rendering::GroupNode::NodeInfo... Generating docs for compound Avogadro::Rendering::Identifier... Generating docs for compound Avogadro::Rendering::Line... Generating docs for compound Avogadro::Rendering::LineStripGeometry... Generating docs for nested compound Avogadro::Rendering::LineStripGeometry::PackedVertex... Generating docs for compound Avogadro::Rendering::MeshGeometry... Generating docs for nested compound Avogadro::Rendering::MeshGeometry::PackedVertex... Generating docs for compound Avogadro::Rendering::Node... Generating docs for compound Avogadro::Rendering::Point... Generating docs for compound Avogadro::Rendering::POVRayVisitor... Generating docs for compound Avogadro::Rendering::Primitive... Generating docs for nested compound Avogadro::Rendering::Primitive::Identifier... Generating docs for compound Avogadro::Rendering::Scene... Generating docs for compound Avogadro::Rendering::Shader... Generating docs for compound Avogadro::Rendering::ShaderInfo... Generating docs for compound Avogadro::Rendering::ShaderProgram... Generating docs for compound Avogadro::Rendering::Sphere... Generating docs for compound Avogadro::Rendering::SphereColor... Generating docs for compound Avogadro::Rendering::SphereGeometry... Generating docs for compound Avogadro::Rendering::TextLabel2D... Generating docs for compound Avogadro::Rendering::TextLabel3D... Generating docs for compound Avogadro::Rendering::TextLabelBase... Generating docs for compound Avogadro::Rendering::TextProperties... Generating docs for compound Avogadro::Rendering::TextRenderStrategy... Generating docs for compound Avogadro::Rendering::Texture2D... Generating docs for compound Avogadro::Rendering::TransformNode... Generating docs for compound Avogadro::Rendering::Visitor... Generating docs for compound Avogadro::Rendering::VolumeGeometry... Generating docs for compound Avogadro::Rendering::VRMLVisitor... Generating docs for compound Avogadro::VTK::vtkGLWidget... Generating docs for compound Avogadro::VTK::VtkPlot... Generating graph info page... Generating directory documentation... Generating index page... Generating main page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Generating XML output... Generating XML output for class Avogadro::QtOpenGL::ActiveObjects Generating XML output for class Avogadro::Rendering::AmbientOcclusionSphereGeometry Generating XML output for class Avogadro::Core::AngleIterator Generating XML output for class Avogadro::Core::Array Generating XML output for class Avogadro::Core::internal::ArrayRefContainer Generating XML output for class Avogadro::Core::ArraySet Generating XML output for class Avogadro::Rendering::ArrowGeometry Generating XML output /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/atom.h:44: warning: explicit link request to 'AtomType' could not be resolved /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/bond.h:20: warning: explicit link request to 'BondType' could not be resolved /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.h:56: warning: argument 'format' of command @param is not found in the argument list of ChargeManager::registerModel(ChargeModel *model) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemanager.h:56: warning: The following parameter of Avogadro::Calc::ChargeManager::registerModel(ChargeModel *model) is not documented: parameter 'model' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemodel.h:96: warning: argument 'array' of command @param is not found in the argument list of ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/chargemodel.h:96: warning: The following parameter of Avogadro::Calc::ChargeModel::potentials(Core::Molecule &mol, const Core::Array< Vector3 > &points) const is not documented: parameter 'points' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/client.h:126: warning: Unsupported xml/html tag found /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h:51: warning: argument 'custom' of command @param is not found in the argument list of ColorButton::setDialogTitle(const QString title="") /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/colorbutton.h:51: warning: The following parameter of Avogadro::QtGui::ColorButton::setDialogTitle(const QString title="") is not documented: parameter 'title' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/coordinateset.h:98: warning: Found unknown command '\index' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:48: warning: The following parameter of Avogadro::Core::CrystalTools::rotateToStandardOrientation(Molecule &molecule, Options opts=None) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:63: warning: The following parameters of Avogadro::Core::CrystalTools::setVolume(Molecule &molecule, Real newVolume, Options opts=None) are not documented: parameter 'molecule' parameter 'newVolume' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:73: warning: The following parameter of Avogadro::Core::CrystalTools::niggliReduce(Molecule &molecule, Options opts=None) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:95: warning: The following parameter of Avogadro::Core::CrystalTools::buildSupercell(Molecule &molecule, unsigned int a, unsigned int b, unsigned int c) is not documented: parameter 'molecule' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/crystaltools.h:107: warning: The following parameters of Avogadro::Core::CrystalTools::setCellMatrix(Molecule &molecule, const Matrix3 &newCellColMatrix, Options opt=None) are not documented: parameter 'molecule' parameter 'newCellColMatrix' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/cube.h:189: warning: The following parameter of Avogadro::Core::Cube::setValue(unsigned int i, float value) is not documented: parameter 'value' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector4ub &color, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, const Vector3ub &color, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'vertices' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'color' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: argument 'lineWidth' of command @param is not found in the argument list of DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/dashedlinegeometry.h:61: warning: The following parameters of Avogadro::Rendering::DashedLineGeometry::addDashedLine(const Vector3f &start, const Vector3f &end, int dashCount) are not documented: parameter 'start' parameter 'end' parameter 'dashCount' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/fileformatdialog.h:144: warning: The following parameter of Avogadro::QtGui::FileFormatDialog::selectFileFormat(QWidget *parentWidget, const std::vector< const Io::FileFormat * > &ffs, const QString &caption, const QString &prompt, const QString &settingsKey=QString(), const QString &formatPrefix=QString()) is not documented: parameter 'formatPrefix' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.h:319: warning: argument 'fmap' of command @param is not found in the argument list of FileFormatManager::filteredFormatFromFormatVector(FileFormat::Operations filter, const FormatIdVector &fvec) const /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/fileformatmanager.h:319: warning: The following parameter of Avogadro::Io::FileFormatManager::filteredFormatFromFormatVector(FileFormat::Operations filter, const FormatIdVector &fvec) const is not documented: parameter 'fvec' for class Avogadro::Core::Atom Generating XML output for class Avogadro::Core::AtomTemplate Generating XML output for class Avogadro::Core::AtomTyper Generating XML output for class Avogadro::Core::AtomUtilities Generating XML output for class Avogadro::Core::AvoSpglib Generating XML output for class Avogadro::QtGui::BackgroundFileFormat Generating XML output for class Avogadro::Core::BasisSet Generating XML output for class Avogadro::MoleQueue::BatchJob Generating XML output for class Avogadro::Rendering::BezierGeometry Generating XML output for class Avogadro::Core::Bond Generating XML output for class Avogadro::Core::BondTemplate Generating XML output for class Avogadro::Rendering::BSplineGeometry Generating XML output for class Avogadro::Rendering::BufferObject Generating XML output for class Avogadro::Rendering::Camera Generating XML output for class Avogadro::Rendering::Cartoon Generating XML output for class Avogadro::Io::CaseInsensitiveComparator Generating XML output for class Avogadro::Calc::ChargeManager Generating XML output for class Avogadro::Calc::ChargeModel Generating XML output for class Avogadro::Io::CjsonFormat Generating XML output for class Avogadro::MoleQueue::Client Generating XML output for class Avogadro::Io::CmlFormat Generating XML output for class Avogadro::Core::Color3f Generating XML output for class Avogadro::QtGui::ColorButton Generating XML output for class Avogadro::Rendering::ColorNormalVertex Generating XML output for class Avogadro::Rendering::ColorTextureVertex Generating XML output for class Avogadro::QtGui::ContainerWidget Generating XML output for class Avogadro::Core::CoordinateBlockGenerator Generating XML output for class Avogadro::Core::CoordinateSet Generating XML output for class Avogadro::Core::CrystalTools Generating XML output for class Avogadro::Core::Cube Generating XML output for class Avogadro::Rendering::CurveGeometry Generating XML output for class Avogadro::QtGui::CustomElementDialog Generating XML output for class Avogadro::Rendering::Cylinder Generating XML output for class Avogadro::Rendering::CylinderColor Generating XML output for class Avogadro::Rendering::CylinderGeometry Generating XML output for class Avogadro::Rendering::DashedLineGeometry Generating XML output for class Avogadro::Io::DcdFormat Generating XML output for class Avogadro::Calc::DefaultModel Generating XML output for class Avogadro::Core::DihedralIterator Generating XML output for class Avogadro::Rendering::Drawable Generating XML output for class Avogadro::Rendering::EigenData Generating XML output for class Avogadro::QtGui::ElementDetail Generating XML output for class Avogadro::QtGui::ElementItem Generating XML output for class Avogadro::Core::Elements Generating XML output for class Avogadro::QtGui::ElementTranslator Generating XML output for class Avogadro::QtGui::ExtensionPlugin Generating XML output for class Avogadro::QtGui::ExtensionPluginFactory Generating XML output for class Avogadro::QtGui::FileBrowseWidget Generating XML output for class Avogadro::Io::FileFormat Generating XML output for class Avogadro::QtGui::FileFormatDialog Generating XML output for class Avogadro::Io::FileFormatManager Generating XML output for class Avogadro::Frustrum Generating XML output for class Avogadro::QuantumIO::GamessukOut Generating XML output for class Avogadro::QuantumIO::GAMESSUSOutput Generating XML output for class Avogadro::QuantumIO::GaussianCube Generating XML output for class Avogadro::QuantumIO::GaussianFchk Generating XML output for class Avogadro::Core::GaussianSet Generating XML output for class Avogadro::Core::GaussianSetTools Generating XML output for class Avogadro::QtGui::GenericHighlighter Generating XML output for class Avogadro::Rendering::GeometryNode Generating XML output for class Avogadro::Rendering::GeometryVisitor Generating XML output for class Avogadro::Rendering::GLRenderer Generating XML output for class Avogadro::Rendering::GLRenderVisitor Generating XML output for class Avogadro::QtOpenGL::GLWidget Generating XML output for class Avogadro::Core::Graph Generating XM/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/groupnode.h:54: warning: The following parameter of Avogadro::Rendering::GroupNode::addChild(Node *node, NodeType ui=NodeType::GEOMETRY) is not documented: parameter 'ui' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:233: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:244: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:257: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/hdf5dataformat.h:299: warning: Found unknown command '@data' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/hydrogentools.h:77: warning: The following parameters of Avogadro::QtGui::HydrogenTools::generateNewHydrogenPositions(const RWAtom &atom, int numberOfHydrogens, std::vector< Vector3 > &positions) are not documented: parameter 'atom' parameter 'numberOfHydrogens' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/inputgenerator.h:452: warning: The following parameter of Avogadro::MoleQueue::InputGenerator::InputGenerator(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/interfacescript.h:451: warning: The following parameter of Avogadro::QtGui::InterfaceScript::InterfaceScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/linestripgeometry.h:64: warning: argument 'color' of command @param is not found in the argument list of LineStripGeometry::addLineStrip(const Core::Array< Vector3f > &vertices, float lineWidth) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:52: warning: The following parameters of Avogadro::QtGui::MeshGenerator::MeshGenerator(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false, QObject *parent=nullptr) are not documented: parameter 'reverse' parameter 'parent' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:68: warning: The following parameter of Avogadro::QtGui::MeshGenerator::initialize(const Core::Cube *cube, Core::Mesh *mesh, float iso, int passes=6, bool reverse=false) is not documented: parameter 'reverse' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/meshgenerator.h:125: warning: The following parameter of Avogadro::QtGui::MeshGenerator::offset(float val1, float val2) is not documented: parameter 'val2' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/meshgeometry.h:67: warning: argument 'colors' of command @param is not found in the argument list of MeshGeometry::addVertices(const Core::Array< Vector3f > &vertices, const Core::Array< Vector3f > &normals) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:171: warning: argument 'a' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:171: warning: argument 'b' of command @param is not found in the argument list of Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/molecule.h:171: warning: The following parameters of Avogadro::QtGui::Molecule::addBond(Index atomId1, Index atomId2, unsigned char bondOrder, Index uniqueId) are not documented: parameter 'atomId1' parameter 'atomId2' L output for class Avogadro::Io::GromacsFormat Generating XML output for class Avogadro::Rendering::GroupNode Generating XML output for class Avogadro::QuantumIO::GUKBasisSet Generating XML output for class Avogadro::Core::hBondRecord Generating XML output for class Avogadro::Io::Hdf5DataFormat Generating XML output for class Avogadro::Core::ArraySet::Holder Generating XML output for class Avogadro::QtGui::HydrogenTools Generating XML output for class Avogadro::Rendering::Identifier Generating XML output for class Avogadro::Rendering::Primitive::Identifier Generating XML output for class Avogadro::MoleQueue::InputGenerator Generating XML output for class Avogadro::MoleQueue::InputGeneratorDialog Generating XML output for class Avogadro::MoleQueue::InputGeneratorWidget Generating XML output for class Avogadro::QtGui::InterfaceScript Generating XML output for class Avogadro::QtGui::InterfaceWidget Generating XML output for class Avogadro::MoleQueue::JobObject Generating XML output for class Avogadro::MoleQueue::JsonRpcClient Generating XML output for class Avogadro::QtGui::JsonWidget Generating XML output for class Avogadro::Io::LammpsDataFormat Generating XML output for class Avogadro::Io::LammpsTrajectoryFormat Generating XML output for class Avogadro::Core::Layer Generating XML output for class Avogadro::Core::LayerData Generating XML output for class Avogadro::Core::LayerManager Generating XML output for class Avogadro::QtGui::LayerModel Generating XML output for class Avogadro::Rendering::Line Generating XML output for class Avogadro::Rendering::LineStripGeometry Generating XML output for class Avogadro::Io::CaseInsensitiveComparator::lowerCaseCompare Generating XML output for class Avogadro::Io::MdlFormat Generating XML output for class Avogadro::Core::Mesh Generating XML output for class Avogadro::QtGui::MeshGenerator Generating XML output for class Avogadro::Rendering::MeshGeometry Generating XML output for class Avogadro::Io::MMTFFormat Generating XML output for class Avogadro::QuantumIO::MoldenFile Generating XML output for class Avogadro::Core::Molecule Generating XML output for class Avogadro::QtGui::Molecule Generating XML output for class Avogadro::Core::MoleculeDeserializer Generating XML output for class Avogadro::Core::MoleculeInfo Generating XML output for class Avogadro::QtGui::MoleculeModel Generating XML output for class Avogadro::Core::MoleculeSerializer Generating XML output for class Avogadro::QtGui::MoleculeSystem Generating XML output for class Avogadro::MoleQueue::MoleQueueDialog Generating XML output for class Avogadro::MoleQueue::MoleQueueManager Generating XML output for class Avogadro::MoleQueue::MoleQueueQueueListModel Generating XML output for class Avogadro::MoleQueue::MoleQueueWidget Generating XML output for class Avogadro::QuantumIO::MopacAux Generating XML output for class Avogadro::QtGui::MultiViewWidget Generating XML output for class Avogadro::Core::Mutex Generating XML output for class Avogadro::Core::NameAtomTyper Generating XML output for class Avogadro::Core::NeighborPerceiver Generating XML output for class Avogadro::Rendering::Node Generating XML output for class Avogadro::Rendering::GroupNode::NodeInfo Generating XML output for class Avogadro::QuantumIO::NWChemJson Generating XML output for class Avogadro::QuantumIO::NWChemLog Generating XML output for class Avogadro::Io::OutcarFormat Generating XML output for class Avogadro::Rendering::DashedLineGeometry::PackedVertex Generating XML output for class Avogadro::Rendering::LineStripGeometry::PackedVertex Generating XML output for class Avogadro::Rendering::MeshGeometry::PackedVertex Generating XML output for class Avogadro::Io::PdbFormat Generating XML output for class Avogadro::QtGui::PeriodicTableScene Generating XML output for class Avogadro::QtGui::PeriodicTableView Generating XML output for class Avogadro::QtGui::PersistentAtom Generating XML output for class Avogadro::QtGui::PersistentBond Generating XML output for class Avogadro::Core::ArraySet::PlaceHolder Generating XML output for class Avogadro::QtGui::PluginLayerMana/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(const QString &scriptFilePath_, QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:31: warning: argument 'scriptFilePath_' of command @param is not found in the argument list of PythonScript::PythonScript(QObject *parent_=nullptr) /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/pythonscript.h:31: warning: The following parameter of Avogadro::QtGui::PythonScript::PythonScript(QObject *parent_=nullptr) is not documented: parameter 'parent_' /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/rwmolecule.h:627: warning: The following parameter of Avogadro::QtGui::RWMolecule::setForceVector(Index atomId, const Vector3 &pos, const QString &undoText=QStringLiteral("Change Force Vectors")) is not documented: parameter 'atomId' ger Generating XML output for class Avogadro::Rendering::Point Generating XML output for class Avogadro::Io::PoscarFormat Generating XML output for class Avogadro::Rendering::POVRayVisitor Generating XML output for class Avogadro::Rendering::Primitive Generating XML output for class Avogadro::QtGui::PythonScript Generating XML output for class Avogadro::QtOpenGL::QtTextRenderStrategy Generating XML output for class Avogadro::MoleQueue::BatchJob::Request Generating XML output for class Avogadro::Core::Residue Generating XML output for class Avogadro::Core::ResidueData Generating XML output for class Avogadro::Core::RingPerceiver Generating XML output for class Avogadro::QtGui::GenericHighlighter::Rule Generating XML output for class Avogadro::QtGui::RWAtom Generating XML output for class Avogadro::QtGui::RWBond Generating XML output for class Avogadro::QtGui::RWLayerManager Generating XML output for class Avogadro::QtGui::RWMolecule Generating XML output for class Avogadro::Rendering::Scene Generating XML output for class Avogadro::QtGui::ScenePlugin Generating XML output for class Avogadro::QtGui::ScenePluginFactory Generating XML output for class Avogadro::QtGui::ScenePluginModel Generating XML output for class Avogadro::QtGui::ScriptLoader Generating XML output for class Avogadro::Core::SecondaryStructureAssigner Generating XML output for class Avogadro::Rendering::Shader Generating XML output for class Avogadro::Rendering::ShaderInfo Generating XML output for class Avogadro::Rendering::ShaderProgram Generating XML output for class Avogadro::Core::SharedMutex Generating XML output for class Avogadro::Core::SlaterSet Generating XML output for class Avogadro::Core::SlaterSetTools Generating XML output for class Avogadro::Core::SpaceGroups Generating XML output for class Avogadro::Rendering::Sphere Generating XML output for class Avogadro::Rendering::SphereColor Generating XML output for class Avogadro::Rendering::SphereGeometry Generating XML output for class Avogadro::Core::SymbolAtomTyper Generating XML output for class Avogadro::Rendering::TextLabel2D Generating XML output for class Avogadro::Rendering::TextLabel3D Generating XML output for class Avogadro::Rendering::TextLabelBase Generating XML output for class Avogadro::Rendering::TextProperties Generating XML output for class Avogadro::Rendering::TextRenderStrategy Generating XML output for class Avogadro::Rendering::Texture2D Generating XML output for class Avogadro::QtGui::ToolPlugin Generating XML output for class Avogadro::QtGui::ToolPluginFactory Generating XML output for class Avogadro::Rendering::TransformNode Generating XML output for class Avogadro::Io::TrrFormat Generating XML output for class Avogadro::Io::TurbomoleFormat Generating XML output for class Avogadro::TypeTraits Generating XML output for class Avogadro::TypeTraits< char > Generating XML output for class Avogadro::TypeTraits< double > Generating XML output for class Avogadro::TypeTraits< float > Generating XML output for class Avogadro::TypeTraits< int > Generating XML output for class Avogadro::TypeTraits< short > Generating XML output for class Avogadro::TypeTraits< unsigned char > Generating XML output for class Avogadro::TypeTraits< unsigned int > Generating XML output for class Avogadro::TypeTraits< unsigned short > Generating XML output for class Avogadro::QtGui::RWMolecule::UndoCommand Generating XML output for class Avogadro::Core::UnitCell Generating XML output for class Avogadro::Core::Variant Generating XML output for class Avogadro::Core::VariantMap Generating XML output for class Avogadro::QtGui::ViewFactory Generating XML output for class Avogadro::Rendering::Visitor Generating XML output for class Avogadro::Rendering::VolumeGeometry Generating XML output for class Avogadro::Rendering::VRMLVisitor Generating XML output for class vtkAvogadroActor Generating XML output for class Avogadro::VTK::vtkGLWidget Generating XML output for class Avogadro::VTK::VtkPlot Generating XML output for class Avogadro::Io::XyzFormat Generating XML output for namespace Avogadro Generating XML output f/builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/matrixserialization.h:142: warning: The following parameter of Avogadro::ProtoCall::MatrixSerialization::deserialize(Avogadro::MatrixX &matrix, const void *data, size_t size) is not documented: parameter 'size' or namespace Avogadro::Calc Generating XML output for namespace Avogadro::Core Generating XML output for namespace Avogadro::Core::internal Generating XML output for namespace Avogadro::Io Generating XML output for namespace Avogadro::MoleQueue Generating XML output for namespace Avogadro::MoleQueue::Ui Generating XML output for namespace Avogadro::ProtoCall Generating XML output for namespace Avogadro::ProtoCall::MatrixSerialization Generating XML output for namespace Avogadro::ProtoCall::Utils Generating XML output for namespace Avogadro::QtGui Generating XML output for namespace Avogadro::QtGui::@110 Generating XML output for namespace Avogadro::QtGui::Ui Generating XML output for namespace Avogadro::QtGui::Utilities Generating XML output for namespace Avogadro::QtOpenGL Generating XML output for namespace Avogadro::QtPlugins Generating XML output for namespace Avogadro::QuantumIO Generating XML output for namespace Avogadro::Rendering Generating XML output for namespace Avogadro::VTK Generating XML output for namespace google Generating XML output for namespace google::protobuf Generating XML output for namespace google::protobuf::io Generating XML output for namespace ProtoCall Generating XML output for namespace ProtoCall::Serialization Generating XML output for namespace QtPlugins Generating XML output for namespace std Generating XML output for file chargemanager.h Generating XML output for file chargemodel.h Generating XML output for file defaultmodel.h Generating XML output for file angleiterator.h Generating XML output for file angletools.h Generating XML output for file array.h Generating XML output for file atom.h Generating XML output for file atomtyper-inline.h Generating XML output for file atomtyper.h Generating XML output for file atomutilities.h Generating XML output for file avogadrocore.h Generating XML output for file avospglib.h Generating XML output for file basisset.h Generating XML output for file bond.h Generating XML output for file color3f.h Generating XML output for file coordinateblockgenerator.h Generating XML output for file coordinateset.h Generating XML output for file crystaltools.h Generating XML output for file cube.h Generating XML output for file dihedraliterator.h Generating XML output for file elementdata.h Generating XML output for file elements.h Generating XML output for file gaussianset.h Generating XML output for file gaussiansettools.h Generating XML output for file graph.h Generating XML output for file layer.h Generating XML output for file layermanager.h Generating XML output for file matrix.h Generating XML output for file mdlvalence_p.h Generating XML output for file mesh.h Generating XML output for file mutex.h Generating XML output for file nameatomtyper.h Generating XML output for file neighborperceiver.h Generating XML output for file residue.h Generating XML output for file residuecolors.h Generating XML output for file residuedata.h Generating XML output for file ringperceiver.h Generating XML output for file secondarystructure.h Generating XML output for file sharedmutex.h Generating XML output for file slaterset.h Generating XML output for file slatersettools.h Generating XML output for file spacegroupdata.h Generating XML output for file spacegroups.h Generating XML output for file symbolatomtyper.h Generating XML output for file types.h Generating XML output for file unitcell.h Generating XML output for file variant-inline.h Generating XML output for file variant.h Generating XML output for file variantmap.h Generating XML output for file vector.h Generating XML output for file cjsonformat.h Generating XML output for file cmlformat.h Generating XML output for file dcdformat.h Generating XML output for file fileformat.h Generating XML output for file fileformatmanager.h Generating XML output for file gromacsformat.h Generating XML output for file hdf5dataformat.h Generating XML output for file lammpsformat.h Generating XML output for file mdlformat.h Generating XML output for file mmtfformat.h Generating XML output for file pdbformat.h Generating XML output for file trrformat.h Generating XML output for file turbomoleformat.h Generating XML output for file vaspformat.h Generating XML output for file xyzformat.h Generating XML output for file batchjob.h Generating XML output for file client.h Generating XML output for file jobobject.h Generating XML output for file jsonrpcclient.h Generating XML output for file inputgenerator.h Generating XML output for file inputgeneratordialog.h Generating XML output for file inputgeneratorwidget.h Generating XML output for file molequeuedialog.h Generating XML output for file molequeuemanager.h Generating XML output for file molequeuequeuelistmodel.h Generating XML output for file molequeuewidget.h Generating XML output for file matrixserialization.h Generating XML output for file moleculedeserializer.h Generating XML output for file moleculeserializer.h Generating XML output for file utils.h Generating XML output for file backgroundfileformat.h Generating XML output for file colorbutton.h Generating XML output for file containerwidget.h Generating XML output for file customelementdialog.h Generating XML output for file elementdetail_p.h Generating XML output for file elementitem_p.h Generating XML output for file elementtranslator.h Generating XML output for file extensionplugin.h Generating XML output for file filebrowsewidget.h Generating XML output for file fileformatdialog.h Generating XML output for file generichighlighter.h Generating XML output for file hydrogentools.h Generating XML output for file interfacescript.h Generating XML output for file interfacewidget.h Generating XML output for file jsonwidget.h Generating XML output for file layermodel.h Generating XML output for file meshgenerator.h Generating XML output for file core/molecule.h Generating XML output for file qtgui/molecule.h Generating XML output for file moleculemodel.h Generating XML output for file multiviewwidget.h Generating XML output for file periodictablescene_p.h Generating XML output for file periodictableview.h Generating XML output for file persistentatom.h Generating XML output for file persistentbond.h Generating XML output for file pluginlayermanager.h Generating XML output for file pythonscript.h Generating XML output for file rwlayermanager.h Generating XML output for file rwmolecule.h Generating XML output for file rwmolecule_undo.h Generating XML output for file sceneplugin.h Generating XML output for file scenepluginmodel.h Generating XML output for file scriptloader.h Generating XML output for file toolplugin.h Generating XML output for file core/utilities.h Generating XML output for file qtgui/utilities.h Generating XML output for file viewfactory.h Generating XML output for file activeobjects.h Generating XML output for file glwidget.h Generating XML output for file qttextrenderstrategy.h Generating XML output for file gamessukout.h Generating XML output for file gamessus.h Generating XML output for file gaussiancube.h Generating XML output for file gaussianfchk.h Generating XML output for file molden.h Generating XML output for file mopacaux.h Generating XML output for file nwchemjson.h Generating XML output for file nwchemlog.h Generating XML output for file ambientocclusionspheregeometry.h Generating XML output for file arrowgeometry.h Generating XML output for file avogadrogl.h Generating XML output for file avogadrorendering.h Generating XML output for file beziergeometry.h Generating XML output for file bsplinegeometry.h Generating XML output for file bufferobject.h Generating XML output for file camera.h Generating XML output for file cartoongeometry.h Generating XML output for file curvegeometry.h Generating XML output for file cylindergeometry.h Generating XML output for file dashedlinegeometry.h Generating XML output for file drawable.h Generating XML output for file geometrynode.h Generating XML output for file geometryvisitor.h Generating XML output for file glrenderer.h Generating XML output for file glrendervisitor.h Generating XML output for file groupnode.h Generating XML output for file linestripgeometry.h Generating XML output for file meshgeometry.h Generating XML output for file node.h Generating XML output for file povrayvisitor.h Generating XML output for file primitive.h Generating XML output for file scene.h Generating XML output for file shader.h Generating XML output for file shaderprogram.h Generating XML output for file spheregeometry.h Generating XML output for file textlabel2d.h Generating XML output for file textlabel3d.h Generating XML output for file textlabelbase.h Generating XML output for file textproperties.h Generating XML output for file textrenderstrategy.h Generating XML output for file texture2d.h Generating XML output for file transformnode.h Generating XML output for file visitor.h Generating XML output for file volumegeometry.h Generating XML output for file vrmlvisitor.h Generating XML output for file vtkAvogadroActor.h Generating XML output for file vtkglwidget.h Generating XML output for file vtkplot.h Generating XML output for file mainpage.dox Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/client/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/docs/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/protocall/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering/ Generate XML output for dir /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/vtk/ Generating XML output for the main page Running plantuml with JAVA... type lookup cache used 6213/65536 hits=31734 misses=7799 symbol lookup cache used 6756/65536 hits=53018 misses=6756 finished... ~/build/BUILD/avogadrolibs-1.97.0 + popd + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.yG7VyO + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64 ++ dirname /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd avogadrolibs-1.97.0 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64 'INSTALL=/usr/bin/install -p' -C build make: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/cmake -S/builddir/build/BUILD/avogadrolibs-1.97.0 -B/builddir/build/BUILD/avogadrolibs-1.97.0/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadrolibs-1.97.0/build/CMakeFiles /builddir/build/BUILD/avogadrolibs-1.97.0/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f utilities/bodr/CMakeFiles/bodrparse.dir/build.make utilities/bodr/CMakeFiles/bodrparse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/bodr /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/bodr /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/bodr/CMakeFiles/bodrparse.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f utilities/bodr/CMakeFiles/bodrparse.dir/build.make utilities/bodr/CMakeFiles/bodrparse.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'utilities/bodr/CMakeFiles/bodrparse.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 0%] Built target bodrparse /usr/bin/make -f utilities/encodefile/CMakeFiles/encodefile.dir/build.make utilities/encodefile/CMakeFiles/encodefile.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/encodefile /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/encodefile/CMakeFiles/encodefile.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f utilities/encodefile/CMakeFiles/encodefile.dir/build.make utilities/encodefile/CMakeFiles/encodefile.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'utilities/encodefile/CMakeFiles/encodefile.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 1%] Built target encodefile /usr/bin/make -f utilities/resdata/CMakeFiles/resdataparse.dir/build.make utilities/resdata/CMakeFiles/resdataparse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/utilities/resdata /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/resdata /builddir/build/BUILD/avogadrolibs-1.97.0/build/utilities/resdata/CMakeFiles/resdataparse.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f utilities/resdata/CMakeFiles/resdataparse.dir/build.make utilities/resdata/CMakeFiles/resdataparse.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'utilities/resdata/CMakeFiles/resdataparse.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 1%] Built target resdataparse /usr/bin/make -f thirdparty/struct/CMakeFiles/struct.dir/build.make thirdparty/struct/CMakeFiles/struct.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/struct /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/struct /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/struct/CMakeFiles/struct.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f thirdparty/struct/CMakeFiles/struct.dir/build.make thirdparty/struct/CMakeFiles/struct.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'thirdparty/struct/CMakeFiles/struct.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 2%] Built target struct /usr/bin/make -f thirdparty/libgwavi/CMakeFiles/gwavi.dir/build.make thirdparty/libgwavi/CMakeFiles/gwavi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/libgwavi /builddir/build/BUILD/avogadrolibs-1.97.0/build/thirdparty/libgwavi/CMakeFiles/gwavi.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f thirdparty/libgwavi/CMakeFiles/gwavi.dir/build.make thirdparty/libgwavi/CMakeFiles/gwavi.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'thirdparty/libgwavi/CMakeFiles/gwavi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 2%] Built target gwavi /usr/bin/make -f avogadro/core/CMakeFiles/AvogadroCore.dir/build.make avogadro/core/CMakeFiles/AvogadroCore.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/core /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/core/CMakeFiles/AvogadroCore.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/core/CMakeFiles/AvogadroCore.dir/build.make avogadro/core/CMakeFiles/AvogadroCore.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/core/CMakeFiles/AvogadroCore.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Built target AvogadroCore /usr/bin/make -f avogadro/calc/CMakeFiles/AvogadroCalc.dir/build.make avogadro/calc/CMakeFiles/AvogadroCalc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/calc /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/calc/CMakeFiles/AvogadroCalc.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/calc/CMakeFiles/AvogadroCalc.dir/build.make avogadro/calc/CMakeFiles/AvogadroCalc.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/calc/CMakeFiles/AvogadroCalc.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 7%] Built target AvogadroCalc /usr/bin/make -f avogadro/io/CMakeFiles/AvogadroIO.dir/build.make avogadro/io/CMakeFiles/AvogadroIO.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/io /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/io/CMakeFiles/AvogadroIO.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/io/CMakeFiles/AvogadroIO.dir/build.make avogadro/io/CMakeFiles/AvogadroIO.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/io/CMakeFiles/AvogadroIO.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 10%] Built target AvogadroIO /usr/bin/make -f avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build.make avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/quantumio /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build.make avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/quantumio/CMakeFiles/AvogadroQuantumIO.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Built target AvogadroQuantumIO /usr/bin/make -f avogadro/command/CMakeFiles/avocjsontocml.dir/build.make avogadro/command/CMakeFiles/avocjsontocml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command/CMakeFiles/avocjsontocml.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/avocjsontocml.dir/build.make avogadro/command/CMakeFiles/avocjsontocml.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/command/CMakeFiles/avocjsontocml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 11%] Built target avocjsontocml /usr/bin/make -f avogadro/command/CMakeFiles/avobabel.dir/build.make avogadro/command/CMakeFiles/avobabel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command/CMakeFiles/avobabel.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/avobabel.dir/build.make avogadro/command/CMakeFiles/avobabel.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/command/CMakeFiles/avobabel.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 12%] Built target avobabel /usr/bin/make -f avogadro/command/CMakeFiles/qube.dir/build.make avogadro/command/CMakeFiles/qube.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/command/CMakeFiles/qube.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/command/CMakeFiles/qube.dir/build.make avogadro/command/CMakeFiles/qube.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/command/CMakeFiles/qube.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 13%] Built target qube /usr/bin/make -f avogadro/rendering/CMakeFiles/AvogadroRendering.dir/build.make avogadro/rendering/CMakeFiles/AvogadroRendering.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/rendering /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/rendering/CMakeFiles/AvogadroRendering.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/rendering/CMakeFiles/AvogadroRendering.dir/build.make avogadro/rendering/CMakeFiles/AvogadroRendering.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/rendering/CMakeFiles/AvogadroRendering.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Built target AvogadroRendering /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Automatic MOC for target AvogadroQtGui cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 23%] Built target AvogadroQtGui_autogen /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build.make avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Built target AvogadroQtGui /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Automatic MOC for target AvogadroQtOpenGL cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 29%] Built target AvogadroQtOpenGL_autogen /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build.make avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtopengl/CMakeFiles/AvogadroQtOpenGL.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 30%] Built target AvogadroQtOpenGL /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 30%] Automatic MOC for target AvogadroMoleQueue cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 30%] Built target AvogadroMoleQueue_autogen /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build.make avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/molequeue/CMakeFiles/AvogadroMoleQueue.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 33%] Built target AvogadroMoleQueue /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 34%] Automatic MOC for target QTAIMScenePlugin cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 34%] Built target QTAIMScenePlugin_autogen /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/qtaim/CMakeFiles/QTAIMScenePlugin.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 34%] Built target QTAIMScenePlugin /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 34%] Automatic MOC for target ThreeDMol cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 34%] Built target ThreeDMol_autogen /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build.make avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/3dmol/CMakeFiles/ThreeDMol.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 35%] Built target ThreeDMol /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 36%] Automatic MOC for target ApplyColors cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 36%] Built target ApplyColors_autogen /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build.make avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/applycolors/CMakeFiles/ApplyColors.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 36%] Built target ApplyColors /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 37%] Automatic MOC for target BondCentric cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 37%] Built target BondCentric_autogen /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build.make avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/bondcentrictool/CMakeFiles/BondCentric.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Built target BondCentric /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Automatic MOC for target Bonding cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 38%] Built target Bonding_autogen /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build.make avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/bonding/CMakeFiles/Bonding.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 39%] Built target Bonding /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target Cartoons cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target Cartoons_autogen /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build.make avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/cartoons/CMakeFiles/Cartoons.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target Cartoons /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Automatic MOC for target CoordinateEditor cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 40%] Built target CoordinateEditor_autogen /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build.make avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/coordinateeditor/CMakeFiles/CoordinateEditor.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 42%] Built target CoordinateEditor /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Automatic MOC for target CopyPaste cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Built target CopyPaste_autogen /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build.make avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/copypaste/CMakeFiles/CopyPaste.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Built target CopyPaste /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Automatic MOC for target Crystal cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 43%] Built target Crystal_autogen /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/crystal/CMakeFiles/Crystal.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 45%] Built target Crystal /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Automatic MOC for target CrystalScene cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Built target CrystalScene_autogen /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build.make avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/crystal/CMakeFiles/CrystalScene.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 46%] Built target CrystalScene /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Automatic MOC for target CustomElements cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Built target CustomElements_autogen /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build.make avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/customelements/CMakeFiles/CustomElements.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Built target CustomElements /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Automatic MOC for target Editor cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 47%] Built target Editor_autogen /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/editor/CMakeFiles/Editor.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build.make avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/editor/CMakeFiles/Editor.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Built target Editor /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Automatic MOC for target FetchPDB cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 48%] Built target FetchPDB_autogen /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build.make avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/fetchpdb/CMakeFiles/FetchPDB.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Built target FetchPDB /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Automatic MOC for target Focus cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/CMakeFiles/Focus_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 49%] Built target Focus_autogen /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/focus/CMakeFiles/Focus.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build.make avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/focus/CMakeFiles/Focus.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Built target Focus /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Automatic MOC for target Hydrogens cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 50%] Built target Hydrogens_autogen /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build.make avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/hydrogens/CMakeFiles/Hydrogens.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 51%] Built target Hydrogens /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 51%] Automatic MOC for target ImportPQR cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 51%] Built target ImportPQR_autogen /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build.make avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/importpqr/CMakeFiles/ImportPQR.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 52%] Built target ImportPQR /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 53%] Automatic MOC for target NucleicInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 53%] Built target NucleicInput_autogen /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build.make avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/insertdna/CMakeFiles/NucleicInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 53%] Built target NucleicInput /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Automatic MOC for target InsertFragment cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 54%] Built target InsertFragment_autogen /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build.make avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/insertfragment/CMakeFiles/InsertFragment.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 55%] Built target InsertFragment /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 56%] Automatic MOC for target Label cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/Label_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 56%] Built target Label_autogen /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/Label.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/Label.dir/build.make avogadro/qtplugins/label/CMakeFiles/Label.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/label/CMakeFiles/Label.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 56%] Built target Label /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 56%] Automatic MOC for target LabelEditor cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 56%] Built target LabelEditor_autogen /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build.make avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/label/CMakeFiles/LabelEditor.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Built target LabelEditor /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Automatic MOC for target LammpsInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 57%] Built target LammpsInput_autogen /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build.make avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/lammpsinput/CMakeFiles/LammpsInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 58%] Built target LammpsInput /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 58%] Automatic MOC for target LineFormatInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 58%] Built target LineFormatInput_autogen /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build.make avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/lineformatinput/CMakeFiles/LineFormatInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 59%] Built target LineFormatInput /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 59%] Automatic MOC for target Manipulator cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 59%] Built target Manipulator_autogen /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build.make avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/manipulator/CMakeFiles/Manipulator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 60%] Built target Manipulator /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 60%] Automatic MOC for target MeasureTool cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 60%] Built target MeasureTool_autogen /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build.make avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/measuretool/CMakeFiles/MeasureTool.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Built target MeasureTool /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Automatic MOC for target MolecularProperties cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 61%] Built target MolecularProperties_autogen /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build.make avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/molecularproperties/CMakeFiles/MolecularProperties.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 62%] Built target MolecularProperties /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Automatic MOC for target MongoChem cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 63%] Built target MongoChem_autogen /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build.make avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/mongochem/CMakeFiles/MongoChem.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 65%] Built target MongoChem /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 65%] Automatic MOC for target Navigator cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 65%] Built target Navigator_autogen /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build.make avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/navigator/CMakeFiles/Navigator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 66%] Built target Navigator /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Automatic MOC for target NetworkDatabases cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Built target NetworkDatabases_autogen /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build.make avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/networkdatabases/CMakeFiles/NetworkDatabases.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Built target NetworkDatabases /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Automatic MOC for target OpenBabel cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 67%] Built target OpenBabel_autogen /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build.make avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/openbabel/CMakeFiles/OpenBabel.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 68%] Built target OpenBabel /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 68%] Automatic MOC for target OpenMMInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 68%] Built target OpenMMInput_autogen /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build.make avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/openmminput/CMakeFiles/OpenMMInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 69%] Built target OpenMMInput /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 69%] Automatic MOC for target PlayerTool cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 69%] Built target PlayerTool_autogen /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build.make avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/playertool/CMakeFiles/PlayerTool.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Built target PlayerTool /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Automatic MOC for target PropertyTables cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 70%] Built target PropertyTables_autogen /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build.make avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/propertytables/CMakeFiles/PropertyTables.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 71%] Built target PropertyTables /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 71%] Automatic MOC for target POVRay cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 71%] Built target POVRay_autogen /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build.make avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/povray/CMakeFiles/POVRay.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 72%] Built target POVRay /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 72%] Automatic MOC for target ResetView cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 72%] Built target ResetView_autogen /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build.make avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/resetview/CMakeFiles/ResetView.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 73%] Built target ResetView /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 73%] Automatic MOC for target Select cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/CMakeFiles/Select_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 73%] Built target Select_autogen /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/select/CMakeFiles/Select.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/select/CMakeFiles/Select.dir/build.make avogadro/qtplugins/select/CMakeFiles/Select.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/select/CMakeFiles/Select.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 74%] Built target Select /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Automatic MOC for target Selection cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 75%] Built target Selection_autogen /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build.make avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/selectiontool/CMakeFiles/Selection.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 76%] Built target Selection /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 76%] Automatic MOC for target SpaceGroup cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 76%] Built target SpaceGroup_autogen /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build.make avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/spacegroup/CMakeFiles/SpaceGroup.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 76%] Built target SpaceGroup /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 76%] Automatic MOC for target Surfaces cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 76%] Built target Surfaces_autogen /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build.make avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/surfaces/CMakeFiles/Surfaces.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Built target Surfaces /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Automatic MOC for target SVG cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/CMakeFiles/SVG_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 77%] Built target SVG_autogen /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/svg/CMakeFiles/SVG.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build.make avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/svg/CMakeFiles/SVG.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 78%] Built target SVG /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 78%] Automatic MOC for target Spectra cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 78%] Built target Spectra_autogen /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build.make avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Built target Spectra /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Automatic MOC for target VRML cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 80%] Built target VRML_autogen /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build.make avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/vrml/CMakeFiles/VRML.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Built target VRML /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Automatic MOC for target apbs cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 81%] Built target apbs_autogen /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build.make avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/apbs/CMakeFiles/apbs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 82%] Built target apbs /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 82%] Automatic MOC for target Cp2kInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 82%] Built target Cp2kInput_autogen /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build.make avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/cp2kinput/CMakeFiles/Cp2kInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Built target Cp2kInput /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Automatic MOC for target GamessInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 83%] Built target GamessInput_autogen /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build.make avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/gamessinput/CMakeFiles/GamessInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 84%] Built target GamessInput /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 84%] Automatic MOC for target commands cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 84%] Built target commands_autogen /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build.make avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/commandscripts/CMakeFiles/commands.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Built target commands /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Automatic MOC for target QuantumInput cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Built target QuantumInput_autogen /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build.make avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/quantuminput/CMakeFiles/QuantumInput.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Built target QuantumInput /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Automatic MOC for target ScriptFileFormats cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 85%] Built target ScriptFileFormats_autogen /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build.make avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/scriptfileformats/CMakeFiles/ScriptFileFormats.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 86%] Built target ScriptFileFormats /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 86%] Automatic MOC for target ScriptCharges cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 86%] Built target ScriptCharges_autogen /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build.make avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/scriptcharges/CMakeFiles/ScriptCharges.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 87%] Built target ScriptCharges /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Automatic MOC for target PluginDownloader cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 88%] Built target PluginDownloader_autogen /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build.make avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/plugindownloader/CMakeFiles/PluginDownloader.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Built target PluginDownloader /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Automatic MOC for target BallStick cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Built target BallStick_autogen /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build.make avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Built target BallStick /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Automatic MOC for target CloseContacts cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Built target CloseContacts_autogen /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build.make avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/closecontacts/CMakeFiles/CloseContacts.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 89%] Built target CloseContacts /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Automatic MOC for target Force cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/CMakeFiles/Force_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Built target Force_autogen /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/force/CMakeFiles/Force.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/force/CMakeFiles/Force.dir/build.make avogadro/qtplugins/force/CMakeFiles/Force.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/force/CMakeFiles/Force.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 90%] Built target Force /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Automatic MOC for target Licorice cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Built target Licorice_autogen /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build.make avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Built target Licorice /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Automatic MOC for target Meshes cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 91%] Built target Meshes_autogen /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build.make avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 92%] Built target Meshes /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Automatic MOC for target NonCovalent cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Built target NonCovalent_autogen /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build.make avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/noncovalent/CMakeFiles/NonCovalent.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Built target NonCovalent /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Automatic MOC for target VanDerWaals cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 93%] Built target VanDerWaals_autogen /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build.make avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 94%] Built target VanDerWaals /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 94%] Automatic MOC for target VanDerWaalsAO cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 94%] Built target VanDerWaalsAO_autogen /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build.make avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/vanderwaalsao/CMakeFiles/VanDerWaalsAO.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Built target VanDerWaalsAO /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Automatic MOC for target Wireframe cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 95%] Built target Wireframe_autogen /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build.make avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Built target Wireframe /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Automatic MOC for target OverlayAxes cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 96%] Built target OverlayAxes_autogen /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build.make avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/overlayaxes/CMakeFiles/OverlayAxes.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Built target OverlayAxes /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Automatic MOC for target QTAIMExtension cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 97%] Built target QTAIMExtension_autogen /usr/bin/make -f avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/build.make avogadro/qtplugins/qtaim/CMakeFiles/QTAIMExtension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins/qtaim /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/qtaim 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/builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Automatic MOC for target AvogadroQtPlugins cd /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins && /usr/bin/cmake -E cmake_autogen /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins_autogen.dir/AutogenInfo.json Release make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [ 99%] Built target AvogadroQtPlugins_autogen /usr/bin/make -f avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/depend make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' cd /builddir/build/BUILD/avogadrolibs-1.97.0/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/avogadrolibs-1.97.0 /builddir/build/BUILD/avogadrolibs-1.97.0/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.97.0/build /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins /builddir/build/BUILD/avogadrolibs-1.97.0/build/avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/make -f avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/build.make avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/build make[2]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[2]: Nothing to be done for 'avogadro/qtplugins/CMakeFiles/AvogadroQtPlugins.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' [100%] Built target AvogadroQtPlugins make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/avogadrolibs-1.97.0/build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/avogadrolibs-1.97.0/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/share/doc/AvogadroLibs/avogadrolibs/README.md -- Installing: 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Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/include/avogadro2/avogadro/core/version.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/include/avogadro2/avogadro/core/sharedmutex.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/include/avogadro2/avogadro/core/avospglib.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/include/avogadro2/avogadro/core/avogadrocoreexport.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/libAvogadroCore.so.1.97.0 -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/libAvogadroCore.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/libAvogadroCore.so.1.97.0" to "/usr/lib64" -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/libAvogadroCore.so -- Installing: 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Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/libAvogadroIO.so.1.97.0 -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/libAvogadroIO.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/libAvogadroIO.so.1.97.0" to "/usr/lib64" -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/libAvogadroIO.so -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/include/avogadro2/avogadro/quantumio/gamessus.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/include/avogadro2/avogadro/quantumio/gaussianfchk.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/include/avogadro2/avogadro/quantumio/gaussiancube.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/include/avogadro2/avogadro/quantumio/molden.h -- Installing: 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/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/include/avogadro2/avogadro/rendering/volumegeometry.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/include/avogadro2/avogadro/rendering/vrmlvisitor.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/include/avogadro2/avogadro/rendering/avogadrorenderingexport.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/libAvogadroRendering.so.1.97.0 -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/libAvogadroRendering.so.1 -- Set runtime path of "/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/libAvogadroRendering.so.1.97.0" to "/usr/lib64" -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/libAvogadroRendering.so -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/include/avogadro2/avogadro/qtgui/backgroundfileformat.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/include/avogadro2/avogadro/qtgui/colorbutton.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/include/avogadro2/avogadro/qtgui/containerwidget.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/include/avogadro2/avogadro/qtgui/customelementdialog.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/include/avogadro2/avogadro/qtgui/elementtranslator.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/include/avogadro2/avogadro/qtgui/extensionplugin.h -- Installing: /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/include/avogadro2/avogadro/qtgui/filebrowsewidget.h -- Installing: 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/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/pyscf.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/qchem.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/terachem.py /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/charges/antechamber.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/charges/xtb.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/formatScripts/zyx.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/dalton.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/gamessuk.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/gaussian.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/molpro.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/mopac.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/nwchem.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/orca.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/psi4.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/pyscf.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/qchem.py: no change /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/terachem.py: no change + ln -sf /usr/lib64/python3.12/site-packages/avogadro2/scripts /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/avogadro2/scripts + chrpath -d /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/libAvogadroCalc.so /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/libAvogadroCore.so /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/libAvogadroIO.so /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/libAvogadroMoleQueue.so /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/libAvogadroQtGui.so /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/libAvogadroQtOpenGL.so /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/libAvogadroQtPlugins.so /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/libAvogadroQuantumIO.so /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/libAvogadroRendering.so + rm -rf /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/share/doc + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.97.0-5.fc39 --unique-debug-suffix -1.97.0-5.fc39.x86_64 --unique-debug-src-base avogadro2-libs-1.97.0-5.fc39.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/avogadrolibs-1.97.0 find-debuginfo: starting Extracting debug info from 9 files DWARF-compressing 9 files sepdebugcrcfix: Updated 9 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/avogadro2-libs-1.97.0-5.fc39.x86_64 12408 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/charges/antechamber.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/charges/xtb.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/formatScripts/zyx.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/terachem.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/qchem.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/pyscf.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/psi4.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/orca.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/nwchem.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/mopac.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/molpro.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/gaussian.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/gamessuk.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/python3.12/site-packages/avogadro2/scripts/inputGenerators/dalton.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/charges/antechamber.py is executable but has no shebang, removing executable bit *** WARNING: ./usr/lib64/avogadro2/scripts/charges/xtb.py is executable but has no shebang, removing executable bit + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/lib64/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: avogadro2-libs-1.97.0-5.fc39.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.bDwzJL + umask 022 + cd /builddir/build/BUILD + cd avogadrolibs-1.97.0 + DOCDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/share/doc/avogadro2-libs + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/share/doc/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadrolibs-1.97.0/README.md /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/share/doc/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadrolibs-1.97.0/thirdparty/libgwavi/README-libgwavi.md /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/share/doc/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadrolibs-1.97.0/avogadrogenerators/README-avogenerators.md /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/share/doc/avogadro2-libs + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Qysjly + umask 022 + cd /builddir/build/BUILD + cd avogadrolibs-1.97.0 + LICENSEDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/share/licenses/avogadro2-libs + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/share/licenses/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadrolibs-1.97.0/LICENSE /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/share/licenses/avogadro2-libs + cp -pr /builddir/build/BUILD/avogadrolibs-1.97.0/molecules/LICENSE-molecules /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/share/licenses/avogadro2-libs + RPM_EC=0 ++ jobs -p + exit 0 warning: absolute symlink: /usr/lib64/avogadro2/scripts/scripts -> /usr/lib64/python3.12/site-packages/avogadro2/scripts Provides: avogadro2-libs = 1.97.0-5.fc39 avogadro2-libs(x86-64) = 1.97.0-5.fc39 avogadro2-libs-static = 0:1.97.0-5.fc39 libAvogadroCalc.so.1()(64bit) libAvogadroCore.so.1()(64bit) libAvogadroIO.so.1()(64bit) libAvogadroMoleQueue.so.1()(64bit) libAvogadroQtGui.so.1()(64bit) libAvogadroQtOpenGL.so.1()(64bit) libAvogadroQtPlugins.so.1()(64bit) libAvogadroQuantumIO.so.1()(64bit) libAvogadroRendering.so.1()(64bit) python-avogadro2-libs = 1.97.0-5.fc39 python3.12-avogadro2-libs = 1.97.0-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: glibc >= 2.37.9000-17 ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libAvogadroCalc.so.1()(64bit) libAvogadroCore.so.1()(64bit) libAvogadroIO.so.1()(64bit) libAvogadroMoleQueue.so.1()(64bit) libAvogadroQtGui.so.1()(64bit) libAvogadroQtOpenGL.so.1()(64bit) libAvogadroQuantumIO.so.1()(64bit) libAvogadroRendering.so.1()(64bit) libGL.so.1()(64bit) libGLEW.so.2.2()(64bit) libQt5Concurrent.so.5()(64bit) libQt5Concurrent.so.5(Qt_5)(64bit) libQt5Core.so.5()(64bit) libQt5Core.so.5(Qt_5)(64bit) libQt5Core.so.5(Qt_5.15)(64bit) libQt5Gui.so.5()(64bit) libQt5Gui.so.5(Qt_5)(64bit) libQt5Network.so.5()(64bit) libQt5Network.so.5(Qt_5)(64bit) libQt5Svg.so.5()(64bit) libQt5Svg.so.5(Qt_5)(64bit) libQt5Widgets.so.5()(64bit) libQt5Widgets.so.5(Qt_5)(64bit) libarchive.so.13()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libhdf5.so.200()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.27)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libsymspg.so.1()(64bit) python(abi) = 3.12 rtld(GNU_HASH) Obsoletes: python-avogadro2-libs < 1.97.0-5.fc39 Processing files: avogadro2-libs-devel-1.97.0-5.fc39.x86_64 Provides: avogadro2-libs-devel = 1.97.0-5.fc39 avogadro2-libs-devel(x86-64) = 1.97.0-5.fc39 cmake(AvogadroLibs) = 1.97.0 cmake(avogadrolibs) = 1.97.0 libgwavi-static Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: cmake-filesystem(x86-64) libAvogadroCalc.so.1()(64bit) libAvogadroCore.so.1()(64bit) libAvogadroIO.so.1()(64bit) libAvogadroMoleQueue.so.1()(64bit) libAvogadroQtGui.so.1()(64bit) libAvogadroQtOpenGL.so.1()(64bit) libAvogadroQtPlugins.so.1()(64bit) libAvogadroQuantumIO.so.1()(64bit) libAvogadroRendering.so.1()(64bit) Processing files: avogadro2-libs-doc-1.97.0-5.fc39.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.LvB8wh + umask 022 + cd /builddir/build/BUILD + cd avogadrolibs-1.97.0 + DOCDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/share/doc/avogadro2-libs-doc + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/share/doc/avogadro2-libs-doc + cp -pr /builddir/build/BUILD/avogadrolibs-1.97.0/README.md /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/share/doc/avogadro2-libs-doc + cp -pr /builddir/build/BUILD/avogadrolibs-1.97.0/build/docs/html /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/share/doc/avogadro2-libs-doc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.vR43zu + umask 022 + cd /builddir/build/BUILD + cd avogadrolibs-1.97.0 + LICENSEDIR=/builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/share/licenses/avogadro2-libs-doc + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/share/licenses/avogadro2-libs-doc + cp -pr /builddir/build/BUILD/avogadrolibs-1.97.0/LICENSE /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64/usr/share/licenses/avogadro2-libs-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: avogadro2-libs-doc = 1.97.0-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: avogadro2-libs-debugsource-1.97.0-5.fc39.x86_64 Provides: avogadro2-libs-debugsource = 1.97.0-5.fc39 avogadro2-libs-debugsource(x86-64) = 1.97.0-5.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: avogadro2-libs-debuginfo-1.97.0-5.fc39.x86_64 Provides: avogadro2-libs-debuginfo = 1.97.0-5.fc39 avogadro2-libs-debuginfo(x86-64) = 1.97.0-5.fc39 debuginfo(build-id) = 3227214e6d55926eb2a203b6ff5d9c23a0ee9c51 debuginfo(build-id) = 32e674e98b4b6daf20b6479f42a65e94191c198c debuginfo(build-id) = 432a5fb17aa743b6f35780e7810f9081bc9a8b56 debuginfo(build-id) = 4b4ee2542ff4513809e2b74977a622098a43b197 debuginfo(build-id) = 730f5a7339437353dd626a6a82d2c5e280f5c688 debuginfo(build-id) = 757991f08e949272e29576501e58874c912a6ce0 debuginfo(build-id) = 75e3fcda8d80e85b81282d5c68aae56a2cd49380 debuginfo(build-id) = 76a33968a2779d57c14d6676fdf86a478daeef39 debuginfo(build-id) = bb8749bb4f633b7f885ccc4259f9cc7f0f745fc2 libAvogadroCalc.so.1.97.0-1.97.0-5.fc39.x86_64.debug()(64bit) libAvogadroCore.so.1.97.0-1.97.0-5.fc39.x86_64.debug()(64bit) libAvogadroIO.so.1.97.0-1.97.0-5.fc39.x86_64.debug()(64bit) libAvogadroMoleQueue.so.1.97.0-1.97.0-5.fc39.x86_64.debug()(64bit) libAvogadroQtGui.so.1.97.0-1.97.0-5.fc39.x86_64.debug()(64bit) libAvogadroQtOpenGL.so.1.97.0-1.97.0-5.fc39.x86_64.debug()(64bit) libAvogadroQtPlugins.so.1.97.0-1.97.0-5.fc39.x86_64.debug()(64bit) libAvogadroQuantumIO.so.1.97.0-1.97.0-5.fc39.x86_64.debug()(64bit) libAvogadroRendering.so.1.97.0-1.97.0-5.fc39.x86_64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: avogadro2-libs-debugsource(x86-64) = 1.97.0-5.fc39 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64 Wrote: /builddir/build/RPMS/avogadro2-libs-1.97.0-5.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/avogadro2-libs-doc-1.97.0-5.fc39.noarch.rpm Wrote: /builddir/build/RPMS/avogadro2-libs-debugsource-1.97.0-5.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/avogadro2-libs-devel-1.97.0-5.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/avogadro2-libs-debuginfo-1.97.0-5.fc39.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.nOfEuD + umask 022 + cd /builddir/build/BUILD + cd avogadrolibs-1.97.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/avogadro2-libs-1.97.0-5.fc39.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.qRRxhp + umask 022 + cd /builddir/build/BUILD + rm -rf avogadrolibs-1.97.0 avogadrolibs-1.97.0.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: %patchN is deprecated (3 usages found), use %patch N (or %patch -P N) absolute symlink: /usr/lib64/avogadro2/scripts/scripts -> /usr/lib64/python3.12/site-packages/avogadro2/scripts Finish: rpmbuild avogadro2-libs-1.97.0-5.fc39.src.rpm Finish: build phase for avogadro2-libs-1.97.0-5.fc39.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1689776071.383479/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1689776071.383479/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1689776071.383479/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/avogadro2-libs-1.97.0-5.fc39.src.rpm) Config(child) 17 minutes 44 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool