Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c14c' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6202559-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 0.68 PID: 9125 Logging PID: 9126 Task: {'appstream': False, 'background': True, 'build_id': 6202559, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '700b857209231752524349fa157d82955b0fd2ea', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/torsava/automatic-obsoletes/smoldyn', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'smoldyn', 'package_version': '2.67.3-6', 'project_dirname': 'automatic-obsoletes', 'project_name': 'automatic-obsoletes', 'project_owner': 'torsava', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/torsava/automatic-obsoletes/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository'}], 'sandbox': 'torsava/automatic-obsoletes--https://src.fedoraproject.org/user/releng', 'source_json': {}, 'source_type': None, 'submitter': 'https://src.fedoraproject.org/user/releng', 'tags': [], 'task_id': '6202559-fedora-rawhide-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/torsava/automatic-obsoletes/smoldyn /var/lib/copr-rpmbuild/workspace/workdir-fte6e8ue/smoldyn --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/torsava/automatic-obsoletes/smoldyn', '/var/lib/copr-rpmbuild/workspace/workdir-fte6e8ue/smoldyn', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-fte6e8ue/smoldyn'... Running: git checkout 700b857209231752524349fa157d82955b0fd2ea -- cmd: ['git', 'checkout', '700b857209231752524349fa157d82955b0fd2ea', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-fte6e8ue/smoldyn rc: 0 stdout: stderr: Note: switching to '700b857209231752524349fa157d82955b0fd2ea'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 700b857 automatic import of smoldyn Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-fte6e8ue/smoldyn rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading Smoldyn-2.67.3.tar.gz INFO: Calling: curl -H Pragma: -o Smoldyn-2.67.3.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/torsava/automatic-obsoletes/smoldyn/Smoldyn-2.67.3.tar.gz/md5/061227e5683e484b0dd465d378e5390b/Smoldyn-2.67.3.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated 100 92.0M 100 92.0M 0 0 15.2M 0 0:00:06 0:00:06 --:--:-- 17.4M INFO: Reading stdout from command: md5sum Smoldyn-2.67.3.tar.gz Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-fte6e8ue/smoldyn/smoldyn.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-fte6e8ue/smoldyn --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1689991478.342716 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 4.1 starting (python version = 3.11.3, NVR = mock-4.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-fte6e8ue/smoldyn/smoldyn.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1689991478.342716/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (fallback) Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 9.3 MB/s | 15 MB 00:01 fedora 19 MB/s | 72 MB 00:03 Last metadata expiration check: 0:00:03 ago on Sat Jul 22 02:04:47 2023. Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: dnf-plugins-core noarch 4.4.1-5.fc39 copr_base 38 k python3-dnf noarch 4.16.1-3.fc39 fedora 586 k Installing dependencies: alternatives x86_64 1.24-1.fc39 fedora 39 k audit-libs x86_64 3.1.1-4.fc39 copr_base 117 k basesystem noarch 11-17.fc39 fedora 7.0 k bash x86_64 5.2.15-3.fc38 fedora 1.8 M bzip2-libs x86_64 1.0.8-16.fc39 fedora 41 k ca-certificates noarch 2023.2.60-2.fc38 fedora 845 k coreutils x86_64 9.3-1.fc39 fedora 1.1 M coreutils-common x86_64 9.3-1.fc39 fedora 2.1 M crypto-policies noarch 20230614-1.git5f3458e.fc39 fedora 94 k curl x86_64 8.2.0-1.fc39 fedora 348 k cyrus-sasl-lib x86_64 2.1.28-10.fc39 fedora 792 k dbus-libs x86_64 1:1.14.8-1.fc39 fedora 156 k dnf-data noarch 4.16.1-3.fc39 fedora 38 k elfutils-default-yama-scope noarch 0.189-3.fc39 fedora 13 k elfutils-libelf x86_64 0.189-3.fc39 fedora 195 k elfutils-libs x86_64 0.189-3.fc39 fedora 258 k expat x86_64 2.5.0-2.fc38 fedora 110 k fedora-gpg-keys noarch 39-0.3 fedora 127 k fedora-release noarch 39-0.21 fedora 6.9 k fedora-release-common noarch 39-0.21 fedora 17 k fedora-release-identity-basic noarch 39-0.21 fedora 7.6 k fedora-repos noarch 39-0.3 fedora 8.8 k fedora-repos-rawhide noarch 39-0.3 fedora 8.4 k file-libs x86_64 5.44-5.fc39 copr_base 730 k filesystem x86_64 3.18-4.fc39 fedora 1.1 M findutils x86_64 1:4.9.0-4.fc39 fedora 491 k fmt x86_64 10.0.0-2.fc39 fedora 127 k gawk x86_64 5.2.2-1.fc39 fedora 1.1 M gdbm-libs x86_64 1:1.23-3.fc38 fedora 56 k glib2 x86_64 2.77.0-7.fc39 fedora 2.8 M glibc x86_64 2.37.9000-17.fc39 fedora 2.2 M glibc-common x86_64 2.37.9000-17.fc39 fedora 346 k glibc-minimal-langpack x86_64 2.37.9000-17.fc39 fedora 64 k gmp x86_64 1:6.2.1-4.fc38 fedora 313 k gnupg2 x86_64 2.4.3-1.fc39 fedora 2.6 M gnutls x86_64 3.8.0-6.fc39 fedora 1.1 M gpgme x86_64 1.20.0-4.fc39 fedora 210 k grep x86_64 3.11-1.fc39 fedora 298 k ima-evm-utils x86_64 1.5-1.fc39 fedora 63 k json-c x86_64 0.16-4.fc38 fedora 41 k keyutils-libs x86_64 1.6.1-6.fc38 fedora 31 k krb5-libs x86_64 1.21-2.fc39 fedora 765 k libacl x86_64 2.3.1-7.fc39 fedora 23 k libarchive x86_64 3.6.1-5.fc39 fedora 400 k libassuan x86_64 2.5.6-1.fc39 fedora 67 k libattr x86_64 2.5.1-7.fc39 fedora 18 k libb2 x86_64 0.98.1-8.fc38 fedora 25 k libblkid x86_64 2.39.1-2.fc39 copr_base 117 k libbrotli x86_64 1.0.9-13.fc39 copr_base 317 k libcap x86_64 2.48-6.fc38 fedora 67 k libcap-ng x86_64 0.8.3-7.fc39 copr_base 33 k libcom_err x86_64 1.47.0-1.fc39 fedora 26 k libcomps x86_64 0.1.19-3.fc39 copr_base 77 k libcurl x86_64 8.2.0-1.fc39 fedora 324 k libdnf x86_64 0.70.1-5.fc39 copr_base 658 k libdnf5 x86_64 5.1.0-1.fc39 fedora 879 k libeconf x86_64 0.4.0-5.fc38 fedora 27 k libevent x86_64 2.1.12-8.fc38 fedora 257 k libffi x86_64 3.4.4-3.fc39 fedora 40 k libfsverity x86_64 1.4-9.fc38 fedora 19 k libgcc x86_64 13.1.1-4.fc39 fedora 107 k libgcrypt x86_64 1.10.2-1.fc39 fedora 514 k libgomp x86_64 13.1.1-4.fc39 fedora 317 k libgpg-error x86_64 1.47-1.fc39 fedora 230 k libidn2 x86_64 2.3.4-2.fc38 fedora 160 k libksba x86_64 1.6.4-1.fc39 fedora 159 k libmodulemd x86_64 2.15.0-5.fc39 copr_base 232 k libmount x86_64 2.39.1-2.fc39 copr_base 155 k libnghttp2 x86_64 1.55.1-1.fc39 fedora 75 k libnsl2 x86_64 2.0.0-5.fc38 fedora 30 k libpsl x86_64 0.21.2-3.fc39 fedora 63 k librepo x86_64 1.15.1-3.fc39 fedora 95 k libreport-filesystem noarch 2.17.11-3.fc39 copr_base 15 k libselinux x86_64 3.5-5.fc39 copr_base 87 k libsemanage x86_64 3.5-4.fc39 copr_base 120 k libsepol x86_64 3.5-1.fc39 fedora 324 k libsigsegv x86_64 2.14-4.fc38 fedora 27 k libsmartcols x86_64 2.39.1-2.fc39 copr_base 68 k libsolv x86_64 0.7.24-8.fc39 copr_base 426 k libssh x86_64 0.10.5-1.fc39 fedora 211 k libssh-config noarch 0.10.5-1.fc39 fedora 9.0 k libstdc++ x86_64 13.1.1-4.fc39 fedora 861 k libtasn1 x86_64 4.19.0-2.fc38 fedora 74 k libtirpc x86_64 1.3.3-1.rc1.fc39 fedora 93 k libunistring x86_64 1.1-3.fc38 fedora 545 k libunistring1.0 x86_64 1.0-1.fc38 fedora 539 k libuuid x86_64 2.39.1-2.fc39 copr_base 29 k libverto x86_64 0.3.2-5.fc38 fedora 21 k libxcrypt x86_64 4.4.36-1.fc39 fedora 119 k libxml2 x86_64 2.10.4-3.fc39 copr_base 701 k libyaml x86_64 0.2.5-9.fc38 fedora 59 k libzstd x86_64 1.5.5-1.fc39 fedora 308 k lua-libs x86_64 5.4.4-9.fc39 fedora 133 k lz4-libs x86_64 1.9.4-3.fc39 fedora 67 k mpdecimal x86_64 2.5.1-6.fc38 fedora 89 k mpfr x86_64 4.2.0-2.fc39 fedora 343 k ncurses-base noarch 6.4-5.20230520.fc39 fedora 88 k ncurses-libs x86_64 6.4-5.20230520.fc39 fedora 336 k nettle x86_64 3.9.1-1.fc39 fedora 425 k npth x86_64 1.6-13.fc39 fedora 24 k openldap x86_64 2.6.4-3.fc39 fedora 254 k openssl-libs x86_64 1:3.0.8-2.fc39 fedora 2.1 M p11-kit x86_64 0.24.1-6.fc38 fedora 359 k p11-kit-trust x86_64 0.24.1-6.fc38 fedora 136 k pcre2 x86_64 10.42-1.fc38.1 fedora 234 k pcre2-syntax noarch 10.42-1.fc38.1 fedora 144 k popt x86_64 1.19-2.fc38 fedora 67 k publicsuffix-list-dafsa noarch 20230614-1.fc39 fedora 57 k python-pip-wheel noarch 23.1.2-4.fc39 copr_base 1.4 M python3 x86_64 3.12.0~b4-1.fc39 fedora 26 k python3-dateutil noarch 1:2.8.2-9.fc39 fedora 355 k python3-dbus x86_64 1.3.2-3.fc39 fedora 157 k python3-distro noarch 1.8.0-5.fc39 fedora 49 k python3-dnf-plugins-core noarch 4.4.1-5.fc39 copr_base 279 k python3-gpg x86_64 1.20.0-4.fc39 fedora 298 k python3-hawkey x86_64 0.70.1-5.fc39 copr_base 107 k python3-libcomps x86_64 0.1.19-3.fc39 copr_base 48 k python3-libdnf x86_64 0.70.1-5.fc39 copr_base 823 k python3-libs x86_64 3.12.0~b4-1.fc39 fedora 9.2 M python3-rpm x86_64 4.18.91-8.fc39 copr_base 68 k python3-six noarch 1.16.0-11.fc39 fedora 41 k python3-systemd x86_64 235-4.fc39 fedora 107 k readline x86_64 8.2-3.fc38 fedora 212 k rpm x86_64 4.18.91-8.fc39 copr_base 500 k rpm-build-libs x86_64 4.18.91-8.fc39 copr_base 96 k rpm-libs x86_64 4.18.91-8.fc39 copr_base 309 k rpm-sequoia x86_64 1.4.1-1.fc39 fedora 843 k rpm-sign-libs x86_64 4.18.91-8.fc39 copr_base 27 k sed x86_64 4.8-12.fc38 fedora 306 k setup noarch 2.14.3-3.fc39 fedora 152 k shadow-utils x86_64 2:4.13-7.fc39 fedora 1.3 M sqlite-libs x86_64 3.42.0-6.fc39 fedora 678 k systemd-libs x86_64 254~rc2-4.fc39 fedora 686 k tpm2-tss x86_64 4.0.1-3.fc38 fedora 675 k tzdata noarch 2023c-1.fc39 fedora 718 k xz-libs x86_64 5.4.3-1.fc39 fedora 108 k zchunk-libs x86_64 1.3.1-1.fc39 fedora 52 k zlib x86_64 1.2.13-3.fc38 fedora 95 k Transaction Summary ================================================================================ Install 140 Packages Total download size: 57 M Installed size: 201 M Downloading Packages: (1/140): dnf-plugins-core-4.4.1-5.fc39.noarch.r 117 kB/s | 38 kB 00:00 (2/140): audit-libs-3.1.1-4.fc39.x86_64.rpm 256 kB/s | 117 kB 00:00 (3/140): libblkid-2.39.1-2.fc39.x86_64.rpm 572 kB/s | 117 kB 00:00 (4/140): libbrotli-1.0.9-13.fc39.x86_64.rpm 1.6 MB/s | 317 kB 00:00 (5/140): libcap-ng-0.8.3-7.fc39.x86_64.rpm 256 kB/s | 33 kB 00:00 (6/140): file-libs-5.44-5.fc39.x86_64.rpm 1.0 MB/s | 730 kB 00:00 (7/140): libcomps-0.1.19-3.fc39.x86_64.rpm 774 kB/s | 77 kB 00:00 (8/140): libdnf-0.70.1-5.fc39.x86_64.rpm 3.3 MB/s | 658 kB 00:00 (9/140): libmodulemd-2.15.0-5.fc39.x86_64.rpm 1.2 MB/s | 232 kB 00:00 (10/140): libmount-2.39.1-2.fc39.x86_64.rpm 1.1 MB/s | 155 kB 00:00 (11/140): libreport-filesystem-2.17.11-3.fc39.n 135 kB/s | 15 kB 00:00 (12/140): libselinux-3.5-5.fc39.x86_64.rpm 808 kB/s | 87 kB 00:00 (13/140): libsemanage-3.5-4.fc39.x86_64.rpm 1.0 MB/s | 120 kB 00:00 (14/140): libsmartcols-2.39.1-2.fc39.x86_64.rpm 636 kB/s | 68 kB 00:00 (15/140): libsolv-0.7.24-8.fc39.x86_64.rpm 3.3 MB/s | 426 kB 00:00 (16/140): libuuid-2.39.1-2.fc39.x86_64.rpm 177 kB/s | 29 kB 00:00 (17/140): libxml2-2.10.4-3.fc39.x86_64.rpm 4.7 MB/s | 701 kB 00:00 (18/140): python-pip-wheel-23.1.2-4.fc39.noarch 6.8 MB/s | 1.4 MB 00:00 (19/140): python3-dnf-plugins-core-4.4.1-5.fc39 1.6 MB/s | 279 kB 00:00 (20/140): python3-hawkey-0.70.1-5.fc39.x86_64.r 866 kB/s | 107 kB 00:00 (21/140): python3-libcomps-0.1.19-3.fc39.x86_64 436 kB/s | 48 kB 00:00 (22/140): python3-libdnf-0.70.1-5.fc39.x86_64.r 6.2 MB/s | 823 kB 00:00 (23/140): python3-rpm-4.18.91-8.fc39.x86_64.rpm 523 kB/s | 68 kB 00:00 (24/140): rpm-4.18.91-8.fc39.x86_64.rpm 4.0 MB/s | 500 kB 00:00 (25/140): rpm-build-libs-4.18.91-8.fc39.x86_64. 857 kB/s | 96 kB 00:00 (26/140): rpm-libs-4.18.91-8.fc39.x86_64.rpm 2.5 MB/s | 309 kB 00:00 (27/140): rpm-sign-libs-4.18.91-8.fc39.x86_64.r 229 kB/s | 27 kB 00:00 (28/140): basesystem-11-17.fc39.noarch.rpm 15 kB/s | 7.0 kB 00:00 (29/140): alternatives-1.24-1.fc39.x86_64.rpm 65 kB/s | 39 kB 00:00 (30/140): bzip2-libs-1.0.8-16.fc39.x86_64.rpm 194 kB/s | 41 kB 00:00 (31/140): bash-5.2.15-3.fc38.x86_64.rpm 1.8 MB/s | 1.8 MB 00:00 (32/140): ca-certificates-2023.2.60-2.fc38.noar 1.6 MB/s | 845 kB 00:00 (33/140): crypto-policies-20230614-1.git5f3458e 761 kB/s | 94 kB 00:00 (34/140): coreutils-9.3-1.fc39.x86_64.rpm 2.0 MB/s | 1.1 MB 00:00 (35/140): coreutils-common-9.3-1.fc39.x86_64.rp 9.6 MB/s | 2.1 MB 00:00 (36/140): curl-8.2.0-1.fc39.x86_64.rpm 2.0 MB/s | 348 kB 00:00 (37/140): dbus-libs-1.14.8-1.fc39.x86_64.rpm 1.2 MB/s | 156 kB 00:00 (38/140): cyrus-sasl-lib-2.1.28-10.fc39.x86_64. 4.2 MB/s | 792 kB 00:00 (39/140): elfutils-default-yama-scope-0.189-3.f 106 kB/s | 13 kB 00:00 (40/140): elfutils-libelf-0.189-3.fc39.x86_64.r 1.3 MB/s | 195 kB 00:00 (41/140): dnf-data-4.16.1-3.fc39.noarch.rpm 192 kB/s | 38 kB 00:00 (42/140): elfutils-libs-0.189-3.fc39.x86_64.rpm 2.0 MB/s | 258 kB 00:00 (43/140): expat-2.5.0-2.fc38.x86_64.rpm 762 kB/s | 110 kB 00:00 (44/140): fedora-gpg-keys-39-0.3.noarch.rpm 869 kB/s | 127 kB 00:00 (45/140): fedora-release-39-0.21.noarch.rpm 60 kB/s | 6.9 kB 00:00 (46/140): fedora-release-common-39-0.21.noarch. 126 kB/s | 17 kB 00:00 (47/140): fedora-release-identity-basic-39-0.21 54 kB/s | 7.6 kB 00:00 (48/140): fedora-repos-39-0.3.noarch.rpm 72 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298 kB 00:00 (64/140): ima-evm-utils-1.5-1.fc39.x86_64.rpm 471 kB/s | 63 kB 00:00 (65/140): json-c-0.16-4.fc38.x86_64.rpm 304 kB/s | 41 kB 00:00 (66/140): keyutils-libs-1.6.1-6.fc38.x86_64.rpm 255 kB/s | 31 kB 00:00 (67/140): libacl-2.3.1-7.fc39.x86_64.rpm 207 kB/s | 23 kB 00:00 (68/140): krb5-libs-1.21-2.fc39.x86_64.rpm 4.5 MB/s | 765 kB 00:00 (69/140): libarchive-3.6.1-5.fc39.x86_64.rpm 2.9 MB/s | 400 kB 00:00 (70/140): libassuan-2.5.6-1.fc39.x86_64.rpm 528 kB/s | 67 kB 00:00 (71/140): libattr-2.5.1-7.fc39.x86_64.rpm 114 kB/s | 18 kB 00:00 (72/140): libb2-0.98.1-8.fc38.x86_64.rpm 220 kB/s | 25 kB 00:00 (73/140): libcap-2.48-6.fc38.x86_64.rpm 620 kB/s | 67 kB 00:00 (74/140): libcom_err-1.47.0-1.fc39.x86_64.rpm 216 kB/s | 26 kB 00:00 (75/140): libcurl-8.2.0-1.fc39.x86_64.rpm 1.9 MB/s | 324 kB 00:00 (76/140): libdnf5-5.1.0-1.fc39.x86_64.rpm 5.7 MB/s | 879 kB 00:00 (77/140): libeconf-0.4.0-5.fc38.x86_64.rpm 227 kB/s | 27 kB 00:00 (78/140): libevent-2.1.12-8.fc38.x86_64.rpm 2.0 MB/s | 257 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(137/140): tzdata-2023c-1.fc39.noarch.rpm 5.0 MB/s | 718 kB 00:00 (138/140): zchunk-libs-1.3.1-1.fc39.x86_64.rpm 466 kB/s | 52 kB 00:00 (139/140): xz-libs-5.4.3-1.fc39.x86_64.rpm 712 kB/s | 108 kB 00:00 (140/140): zlib-1.2.13-3.fc38.x86_64.rpm 766 kB/s | 95 kB 00:00 -------------------------------------------------------------------------------- Total 7.3 MB/s | 57 MB 00:07 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary (0x18B8E74C) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-4.fc39.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.1.1-4.fc39.x86_64 1/140 Running scriptlet: libgcc-13.1.1-4.fc39.x86_64 1/140 Installing : tzdata-2023c-1.fc39.noarch 2/140 Installing : crypto-policies-20230614-1.git5f3458e.fc39.noarc 3/140 Running scriptlet: crypto-policies-20230614-1.git5f3458e.fc39.noarc 3/140 Installing : fedora-release-identity-basic-39-0.21.noarch 4/140 Installing : publicsuffix-list-dafsa-20230614-1.fc39.noarch 5/140 Installing : pcre2-syntax-10.42-1.fc38.1.noarch 6/140 Installing : ncurses-base-6.4-5.20230520.fc39.noarch 7/140 Installing : libssh-config-0.10.5-1.fc39.noarch 8/140 Installing : fedora-gpg-keys-39-0.3.noarch 9/140 Installing : fedora-release-39-0.21.noarch 10/140 Installing : fedora-release-common-39-0.21.noarch 11/140 Installing : fedora-repos-rawhide-39-0.3.noarch 12/140 Installing : fedora-repos-39-0.3.noarch 13/140 Installing : setup-2.14.3-3.fc39.noarch 14/140 Running scriptlet: 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python3-gpg-1.20.0-4.fc39.x86_64 120/140 Installing : ima-evm-utils-1.5-1.fc39.x86_64 121/140 Installing : curl-8.2.0-1.fc39.x86_64 122/140 Installing : libfsverity-1.4-9.fc38.x86_64 123/140 Installing : rpm-sequoia-1.4.1-1.fc39.x86_64 124/140 Installing : rpm-libs-4.18.91-8.fc39.x86_64 125/140 Installing : libmodulemd-2.15.0-5.fc39.x86_64 126/140 Installing : libsolv-0.7.24-8.fc39.x86_64 127/140 Installing : libdnf-0.70.1-5.fc39.x86_64 128/140 Installing : python3-libdnf-0.70.1-5.fc39.x86_64 129/140 Installing : python3-hawkey-0.70.1-5.fc39.x86_64 130/140 Installing : libdnf5-5.1.0-1.fc39.x86_64 131/140 warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew Installing : rpm-build-libs-4.18.91-8.fc39.x86_64 132/140 Installing : rpm-sign-libs-4.18.91-8.fc39.x86_64 133/140 Installing : python3-rpm-4.18.91-8.fc39.x86_64 134/140 Installing : libreport-filesystem-2.17.11-3.fc39.noarch 135/140 Installing : dnf-data-4.16.1-3.fc39.noarch 136/140 Installing : python3-dnf-4.16.1-3.fc39.noarch 137/140 Installing : python3-dnf-plugins-core-4.4.1-5.fc39.noarch 138/140 Installing : dnf-plugins-core-4.4.1-5.fc39.noarch 139/140 Running scriptlet: rpm-4.18.91-8.fc39.x86_64 140/140 Installing : rpm-4.18.91-8.fc39.x86_64 140/140 Running scriptlet: filesystem-3.18-4.fc39.x86_64 140/140 Running scriptlet: ca-certificates-2023.2.60-2.fc38.noarch 140/140 Running scriptlet: rpm-4.18.91-8.fc39.x86_64 140/140 Verifying : audit-libs-3.1.1-4.fc39.x86_64 1/140 Verifying : dnf-plugins-core-4.4.1-5.fc39.noarch 2/140 Verifying : file-libs-5.44-5.fc39.x86_64 3/140 Verifying : libblkid-2.39.1-2.fc39.x86_64 4/140 Verifying : libbrotli-1.0.9-13.fc39.x86_64 5/140 Verifying : libcap-ng-0.8.3-7.fc39.x86_64 6/140 Verifying : libcomps-0.1.19-3.fc39.x86_64 7/140 Verifying : libdnf-0.70.1-5.fc39.x86_64 8/140 Verifying : libmodulemd-2.15.0-5.fc39.x86_64 9/140 Verifying : libmount-2.39.1-2.fc39.x86_64 10/140 Verifying : libreport-filesystem-2.17.11-3.fc39.noarch 11/140 Verifying : libselinux-3.5-5.fc39.x86_64 12/140 Verifying : libsemanage-3.5-4.fc39.x86_64 13/140 Verifying : libsmartcols-2.39.1-2.fc39.x86_64 14/140 Verifying : libsolv-0.7.24-8.fc39.x86_64 15/140 Verifying : libuuid-2.39.1-2.fc39.x86_64 16/140 Verifying : libxml2-2.10.4-3.fc39.x86_64 17/140 Verifying : python-pip-wheel-23.1.2-4.fc39.noarch 18/140 Verifying : python3-dnf-plugins-core-4.4.1-5.fc39.noarch 19/140 Verifying : python3-hawkey-0.70.1-5.fc39.x86_64 20/140 Verifying : python3-libcomps-0.1.19-3.fc39.x86_64 21/140 Verifying : python3-libdnf-0.70.1-5.fc39.x86_64 22/140 Verifying : python3-rpm-4.18.91-8.fc39.x86_64 23/140 Verifying : rpm-4.18.91-8.fc39.x86_64 24/140 Verifying : rpm-build-libs-4.18.91-8.fc39.x86_64 25/140 Verifying : rpm-libs-4.18.91-8.fc39.x86_64 26/140 Verifying : rpm-sign-libs-4.18.91-8.fc39.x86_64 27/140 Verifying : alternatives-1.24-1.fc39.x86_64 28/140 Verifying : basesystem-11-17.fc39.noarch 29/140 Verifying : bash-5.2.15-3.fc38.x86_64 30/140 Verifying : bzip2-libs-1.0.8-16.fc39.x86_64 31/140 Verifying : ca-certificates-2023.2.60-2.fc38.noarch 32/140 Verifying : coreutils-9.3-1.fc39.x86_64 33/140 Verifying : coreutils-common-9.3-1.fc39.x86_64 34/140 Verifying : crypto-policies-20230614-1.git5f3458e.fc39.noarc 35/140 Verifying : curl-8.2.0-1.fc39.x86_64 36/140 Verifying : cyrus-sasl-lib-2.1.28-10.fc39.x86_64 37/140 Verifying : dbus-libs-1:1.14.8-1.fc39.x86_64 38/140 Verifying : dnf-data-4.16.1-3.fc39.noarch 39/140 Verifying : elfutils-default-yama-scope-0.189-3.fc39.noarch 40/140 Verifying : elfutils-libelf-0.189-3.fc39.x86_64 41/140 Verifying : elfutils-libs-0.189-3.fc39.x86_64 42/140 Verifying : expat-2.5.0-2.fc38.x86_64 43/140 Verifying : fedora-gpg-keys-39-0.3.noarch 44/140 Verifying : fedora-release-39-0.21.noarch 45/140 Verifying : fedora-release-common-39-0.21.noarch 46/140 Verifying : fedora-release-identity-basic-39-0.21.noarch 47/140 Verifying : fedora-repos-39-0.3.noarch 48/140 Verifying : fedora-repos-rawhide-39-0.3.noarch 49/140 Verifying : filesystem-3.18-4.fc39.x86_64 50/140 Verifying : findutils-1:4.9.0-4.fc39.x86_64 51/140 Verifying : fmt-10.0.0-2.fc39.x86_64 52/140 Verifying : gawk-5.2.2-1.fc39.x86_64 53/140 Verifying : gdbm-libs-1:1.23-3.fc38.x86_64 54/140 Verifying : glib2-2.77.0-7.fc39.x86_64 55/140 Verifying : glibc-2.37.9000-17.fc39.x86_64 56/140 Verifying : glibc-common-2.37.9000-17.fc39.x86_64 57/140 Verifying : glibc-minimal-langpack-2.37.9000-17.fc39.x86_64 58/140 Verifying : gmp-1:6.2.1-4.fc38.x86_64 59/140 Verifying : gnupg2-2.4.3-1.fc39.x86_64 60/140 Verifying : gnutls-3.8.0-6.fc39.x86_64 61/140 Verifying : gpgme-1.20.0-4.fc39.x86_64 62/140 Verifying : grep-3.11-1.fc39.x86_64 63/140 Verifying : ima-evm-utils-1.5-1.fc39.x86_64 64/140 Verifying : json-c-0.16-4.fc38.x86_64 65/140 Verifying : keyutils-libs-1.6.1-6.fc38.x86_64 66/140 Verifying : krb5-libs-1.21-2.fc39.x86_64 67/140 Verifying : libacl-2.3.1-7.fc39.x86_64 68/140 Verifying : libarchive-3.6.1-5.fc39.x86_64 69/140 Verifying : libassuan-2.5.6-1.fc39.x86_64 70/140 Verifying : libattr-2.5.1-7.fc39.x86_64 71/140 Verifying : libb2-0.98.1-8.fc38.x86_64 72/140 Verifying : libcap-2.48-6.fc38.x86_64 73/140 Verifying : libcom_err-1.47.0-1.fc39.x86_64 74/140 Verifying : libcurl-8.2.0-1.fc39.x86_64 75/140 Verifying : libdnf5-5.1.0-1.fc39.x86_64 76/140 Verifying : libeconf-0.4.0-5.fc38.x86_64 77/140 Verifying : libevent-2.1.12-8.fc38.x86_64 78/140 Verifying : libffi-3.4.4-3.fc39.x86_64 79/140 Verifying : libfsverity-1.4-9.fc38.x86_64 80/140 Verifying : libgcc-13.1.1-4.fc39.x86_64 81/140 Verifying : libgcrypt-1.10.2-1.fc39.x86_64 82/140 Verifying : libgomp-13.1.1-4.fc39.x86_64 83/140 Verifying : libgpg-error-1.47-1.fc39.x86_64 84/140 Verifying : libidn2-2.3.4-2.fc38.x86_64 85/140 Verifying : libksba-1.6.4-1.fc39.x86_64 86/140 Verifying : libnghttp2-1.55.1-1.fc39.x86_64 87/140 Verifying : libnsl2-2.0.0-5.fc38.x86_64 88/140 Verifying : libpsl-0.21.2-3.fc39.x86_64 89/140 Verifying : librepo-1.15.1-3.fc39.x86_64 90/140 Verifying : libsepol-3.5-1.fc39.x86_64 91/140 Verifying : libsigsegv-2.14-4.fc38.x86_64 92/140 Verifying : libssh-0.10.5-1.fc39.x86_64 93/140 Verifying : libssh-config-0.10.5-1.fc39.noarch 94/140 Verifying : libstdc++-13.1.1-4.fc39.x86_64 95/140 Verifying : libtasn1-4.19.0-2.fc38.x86_64 96/140 Verifying : libtirpc-1.3.3-1.rc1.fc39.x86_64 97/140 Verifying : libunistring-1.1-3.fc38.x86_64 98/140 Verifying : libunistring1.0-1.0-1.fc38.x86_64 99/140 Verifying : libverto-0.3.2-5.fc38.x86_64 100/140 Verifying : libxcrypt-4.4.36-1.fc39.x86_64 101/140 Verifying : libyaml-0.2.5-9.fc38.x86_64 102/140 Verifying : libzstd-1.5.5-1.fc39.x86_64 103/140 Verifying : lua-libs-5.4.4-9.fc39.x86_64 104/140 Verifying : lz4-libs-1.9.4-3.fc39.x86_64 105/140 Verifying : mpdecimal-2.5.1-6.fc38.x86_64 106/140 Verifying : mpfr-4.2.0-2.fc39.x86_64 107/140 Verifying : ncurses-base-6.4-5.20230520.fc39.noarch 108/140 Verifying : ncurses-libs-6.4-5.20230520.fc39.x86_64 109/140 Verifying : nettle-3.9.1-1.fc39.x86_64 110/140 Verifying : npth-1.6-13.fc39.x86_64 111/140 Verifying : openldap-2.6.4-3.fc39.x86_64 112/140 Verifying : openssl-libs-1:3.0.8-2.fc39.x86_64 113/140 Verifying : p11-kit-0.24.1-6.fc38.x86_64 114/140 Verifying : p11-kit-trust-0.24.1-6.fc38.x86_64 115/140 Verifying : pcre2-10.42-1.fc38.1.x86_64 116/140 Verifying : pcre2-syntax-10.42-1.fc38.1.noarch 117/140 Verifying : popt-1.19-2.fc38.x86_64 118/140 Verifying : publicsuffix-list-dafsa-20230614-1.fc39.noarch 119/140 Verifying : python3-3.12.0~b4-1.fc39.x86_64 120/140 Verifying : python3-dateutil-1:2.8.2-9.fc39.noarch 121/140 Verifying : python3-dbus-1.3.2-3.fc39.x86_64 122/140 Verifying : python3-distro-1.8.0-5.fc39.noarch 123/140 Verifying : python3-dnf-4.16.1-3.fc39.noarch 124/140 Verifying : python3-gpg-1.20.0-4.fc39.x86_64 125/140 Verifying : python3-libs-3.12.0~b4-1.fc39.x86_64 126/140 Verifying : python3-six-1.16.0-11.fc39.noarch 127/140 Verifying : python3-systemd-235-4.fc39.x86_64 128/140 Verifying : readline-8.2-3.fc38.x86_64 129/140 Verifying : rpm-sequoia-1.4.1-1.fc39.x86_64 130/140 Verifying : sed-4.8-12.fc38.x86_64 131/140 Verifying : setup-2.14.3-3.fc39.noarch 132/140 Verifying : shadow-utils-2:4.13-7.fc39.x86_64 133/140 Verifying : sqlite-libs-3.42.0-6.fc39.x86_64 134/140 Verifying : systemd-libs-254~rc2-4.fc39.x86_64 135/140 Verifying : tpm2-tss-4.0.1-3.fc38.x86_64 136/140 Verifying : tzdata-2023c-1.fc39.noarch 137/140 Verifying : xz-libs-5.4.3-1.fc39.x86_64 138/140 Verifying : zchunk-libs-1.3.1-1.fc39.x86_64 139/140 Verifying : zlib-1.2.13-3.fc38.x86_64 140/140 Installed products updated. Installed: alternatives-1.24-1.fc39.x86_64 audit-libs-3.1.1-4.fc39.x86_64 basesystem-11-17.fc39.noarch bash-5.2.15-3.fc38.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.60-2.fc38.noarch coreutils-9.3-1.fc39.x86_64 coreutils-common-9.3-1.fc39.x86_64 crypto-policies-20230614-1.git5f3458e.fc39.noarch curl-8.2.0-1.fc39.x86_64 cyrus-sasl-lib-2.1.28-10.fc39.x86_64 dbus-libs-1:1.14.8-1.fc39.x86_64 dnf-data-4.16.1-3.fc39.noarch dnf-plugins-core-4.4.1-5.fc39.noarch elfutils-default-yama-scope-0.189-3.fc39.noarch elfutils-libelf-0.189-3.fc39.x86_64 elfutils-libs-0.189-3.fc39.x86_64 expat-2.5.0-2.fc38.x86_64 fedora-gpg-keys-39-0.3.noarch fedora-release-39-0.21.noarch fedora-release-common-39-0.21.noarch fedora-release-identity-basic-39-0.21.noarch fedora-repos-39-0.3.noarch fedora-repos-rawhide-39-0.3.noarch file-libs-5.44-5.fc39.x86_64 filesystem-3.18-4.fc39.x86_64 findutils-1:4.9.0-4.fc39.x86_64 fmt-10.0.0-2.fc39.x86_64 gawk-5.2.2-1.fc39.x86_64 gdbm-libs-1:1.23-3.fc38.x86_64 glib2-2.77.0-7.fc39.x86_64 glibc-2.37.9000-17.fc39.x86_64 glibc-common-2.37.9000-17.fc39.x86_64 glibc-minimal-langpack-2.37.9000-17.fc39.x86_64 gmp-1:6.2.1-4.fc38.x86_64 gnupg2-2.4.3-1.fc39.x86_64 gnutls-3.8.0-6.fc39.x86_64 gpgme-1.20.0-4.fc39.x86_64 grep-3.11-1.fc39.x86_64 ima-evm-utils-1.5-1.fc39.x86_64 json-c-0.16-4.fc38.x86_64 keyutils-libs-1.6.1-6.fc38.x86_64 krb5-libs-1.21-2.fc39.x86_64 libacl-2.3.1-7.fc39.x86_64 libarchive-3.6.1-5.fc39.x86_64 libassuan-2.5.6-1.fc39.x86_64 libattr-2.5.1-7.fc39.x86_64 libb2-0.98.1-8.fc38.x86_64 libblkid-2.39.1-2.fc39.x86_64 libbrotli-1.0.9-13.fc39.x86_64 libcap-2.48-6.fc38.x86_64 libcap-ng-0.8.3-7.fc39.x86_64 libcom_err-1.47.0-1.fc39.x86_64 libcomps-0.1.19-3.fc39.x86_64 libcurl-8.2.0-1.fc39.x86_64 libdnf-0.70.1-5.fc39.x86_64 libdnf5-5.1.0-1.fc39.x86_64 libeconf-0.4.0-5.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libffi-3.4.4-3.fc39.x86_64 libfsverity-1.4-9.fc38.x86_64 libgcc-13.1.1-4.fc39.x86_64 libgcrypt-1.10.2-1.fc39.x86_64 libgomp-13.1.1-4.fc39.x86_64 libgpg-error-1.47-1.fc39.x86_64 libidn2-2.3.4-2.fc38.x86_64 libksba-1.6.4-1.fc39.x86_64 libmodulemd-2.15.0-5.fc39.x86_64 libmount-2.39.1-2.fc39.x86_64 libnghttp2-1.55.1-1.fc39.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libpsl-0.21.2-3.fc39.x86_64 librepo-1.15.1-3.fc39.x86_64 libreport-filesystem-2.17.11-3.fc39.noarch libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-1.fc39.x86_64 libsigsegv-2.14-4.fc38.x86_64 libsmartcols-2.39.1-2.fc39.x86_64 libsolv-0.7.24-8.fc39.x86_64 libssh-0.10.5-1.fc39.x86_64 libssh-config-0.10.5-1.fc39.noarch libstdc++-13.1.1-4.fc39.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libtirpc-1.3.3-1.rc1.fc39.x86_64 libunistring-1.1-3.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libuuid-2.39.1-2.fc39.x86_64 libverto-0.3.2-5.fc38.x86_64 libxcrypt-4.4.36-1.fc39.x86_64 libxml2-2.10.4-3.fc39.x86_64 libyaml-0.2.5-9.fc38.x86_64 libzstd-1.5.5-1.fc39.x86_64 lua-libs-5.4.4-9.fc39.x86_64 lz4-libs-1.9.4-3.fc39.x86_64 mpdecimal-2.5.1-6.fc38.x86_64 mpfr-4.2.0-2.fc39.x86_64 ncurses-base-6.4-5.20230520.fc39.noarch ncurses-libs-6.4-5.20230520.fc39.x86_64 nettle-3.9.1-1.fc39.x86_64 npth-1.6-13.fc39.x86_64 openldap-2.6.4-3.fc39.x86_64 openssl-libs-1:3.0.8-2.fc39.x86_64 p11-kit-0.24.1-6.fc38.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 pcre2-10.42-1.fc38.1.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch popt-1.19-2.fc38.x86_64 publicsuffix-list-dafsa-20230614-1.fc39.noarch python-pip-wheel-23.1.2-4.fc39.noarch python3-3.12.0~b4-1.fc39.x86_64 python3-dateutil-1:2.8.2-9.fc39.noarch python3-dbus-1.3.2-3.fc39.x86_64 python3-distro-1.8.0-5.fc39.noarch python3-dnf-4.16.1-3.fc39.noarch python3-dnf-plugins-core-4.4.1-5.fc39.noarch python3-gpg-1.20.0-4.fc39.x86_64 python3-hawkey-0.70.1-5.fc39.x86_64 python3-libcomps-0.1.19-3.fc39.x86_64 python3-libdnf-0.70.1-5.fc39.x86_64 python3-libs-3.12.0~b4-1.fc39.x86_64 python3-rpm-4.18.91-8.fc39.x86_64 python3-six-1.16.0-11.fc39.noarch python3-systemd-235-4.fc39.x86_64 readline-8.2-3.fc38.x86_64 rpm-4.18.91-8.fc39.x86_64 rpm-build-libs-4.18.91-8.fc39.x86_64 rpm-libs-4.18.91-8.fc39.x86_64 rpm-sequoia-1.4.1-1.fc39.x86_64 rpm-sign-libs-4.18.91-8.fc39.x86_64 sed-4.8-12.fc38.x86_64 setup-2.14.3-3.fc39.noarch shadow-utils-2:4.13-7.fc39.x86_64 sqlite-libs-3.42.0-6.fc39.x86_64 systemd-libs-254~rc2-4.fc39.x86_64 tpm2-tss-4.0.1-3.fc38.x86_64 tzdata-2023c-1.fc39.noarch xz-libs-5.4.3-1.fc39.x86_64 zchunk-libs-1.3.1-1.fc39.x86_64 zlib-1.2.13-3.fc38.x86_64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1689991478.342716/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (direct choice) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 9.1 MB/s | 15 MB 00:01 fedora 15 MB/s | 72 MB 00:04 Last metadata expiration check: 0:00:04 ago on Sat Jul 22 02:05:36 2023. Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.15-3.fc38 fedora 1.8 M bzip2 x86_64 1.0.8-16.fc39 fedora 52 k coreutils x86_64 9.3-1.fc39 fedora 1.1 M cpio x86_64 2.14-2.fc39 fedora 279 k diffutils x86_64 3.10-2.fc39 fedora 398 k fedora-release-common noarch 39-0.21 fedora 17 k findutils x86_64 1:4.9.0-4.fc39 fedora 491 k gawk x86_64 5.2.2-1.fc39 fedora 1.1 M glibc-minimal-langpack x86_64 2.37.9000-17.fc39 fedora 64 k grep x86_64 3.11-1.fc39 fedora 298 k gzip x86_64 1.12-3.fc38 fedora 166 k info x86_64 7.0.3-2.fc39 fedora 182 k patch x86_64 2.7.6-21.fc39 fedora 126 k redhat-rpm-config noarch 261-1.fc39 fedora 84 k rpm-build x86_64 4.18.91-8.fc39 copr_base 71 k sed x86_64 4.8-12.fc38 fedora 306 k shadow-utils x86_64 2:4.13-7.fc39 fedora 1.3 M tar x86_64 2:1.34-8.fc39 fedora 888 k unzip x86_64 6.0-60.fc38 fedora 184 k util-linux x86_64 2.39.1-2.fc39 copr_base 1.1 M which x86_64 2.21-39.fc39 fedora 42 k xz x86_64 5.4.3-1.fc39 fedora 555 k Installing dependencies: alternatives x86_64 1.24-1.fc39 fedora 39 k ansible-srpm-macros noarch 1-10.fc39 fedora 21 k audit-libs x86_64 3.1.1-4.fc39 copr_base 117 k authselect x86_64 1.4.2-2.fc38 fedora 144 k authselect-libs x86_64 1.4.2-2.fc38 fedora 249 k basesystem noarch 11-17.fc39 fedora 7.0 k binutils x86_64 2.40-9.fc39 fedora 5.6 M binutils-gold x86_64 2.40-9.fc39 fedora 797 k bzip2-libs x86_64 1.0.8-16.fc39 fedora 41 k ca-certificates noarch 2023.2.60-2.fc38 fedora 845 k coreutils-common x86_64 9.3-1.fc39 fedora 2.1 M cracklib x86_64 2.9.11-1.fc39 fedora 94 k crypto-policies noarch 20230614-1.git5f3458e.fc39 fedora 94 k curl x86_64 8.2.0-1.fc39 fedora 348 k cyrus-sasl-lib x86_64 2.1.28-10.fc39 fedora 792 k debugedit x86_64 5.0-9.fc39 fedora 77 k dwz x86_64 0.15-2.fc38 fedora 135 k ed x86_64 1.19-2.fc38 fedora 78 k efi-srpm-macros noarch 5-8.fc39 fedora 22 k elfutils x86_64 0.189-3.fc39 fedora 537 k elfutils-debuginfod-client x86_64 0.189-3.fc39 fedora 38 k elfutils-default-yama-scope noarch 0.189-3.fc39 fedora 13 k elfutils-libelf x86_64 0.189-3.fc39 fedora 195 k elfutils-libs x86_64 0.189-3.fc39 fedora 258 k fedora-gpg-keys noarch 39-0.3 fedora 127 k fedora-release noarch 39-0.21 fedora 6.9 k fedora-release-identity-basic noarch 39-0.21 fedora 7.6 k fedora-repos noarch 39-0.3 fedora 8.8 k fedora-repos-rawhide noarch 39-0.3 fedora 8.4 k file x86_64 5.44-5.fc39 copr_base 50 k file-libs x86_64 5.44-5.fc39 copr_base 730 k filesystem x86_64 3.18-4.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-11.fc38 fedora 26 k fpc-srpm-macros noarch 1.3-7.fc38 fedora 7.8 k gdb-minimal x86_64 13.2-5.fc39 fedora 4.2 M gdbm-libs x86_64 1:1.23-3.fc38 fedora 56 k ghc-srpm-macros noarch 1.6.1-1.fc38 fedora 8.0 k glibc x86_64 2.37.9000-17.fc39 fedora 2.2 M glibc-common x86_64 2.37.9000-17.fc39 fedora 346 k glibc-gconv-extra x86_64 2.37.9000-17.fc39 fedora 1.6 M gmp x86_64 1:6.2.1-4.fc38 fedora 313 k gnat-srpm-macros noarch 6-2.fc38 fedora 8.8 k go-srpm-macros noarch 3.2.0-3.fc39 fedora 27 k jansson x86_64 2.13.1-6.fc38 fedora 44 k kernel-srpm-macros noarch 1.0-19.fc39 fedora 10 k keyutils-libs x86_64 1.6.1-6.fc38 fedora 31 k krb5-libs x86_64 1.21-2.fc39 fedora 765 k libacl x86_64 2.3.1-7.fc39 fedora 23 k libarchive x86_64 3.6.1-5.fc39 fedora 400 k libattr x86_64 2.5.1-7.fc39 fedora 18 k libblkid x86_64 2.39.1-2.fc39 copr_base 117 k libbrotli x86_64 1.0.9-13.fc39 copr_base 317 k libcap x86_64 2.48-6.fc38 fedora 67 k libcap-ng x86_64 0.8.3-7.fc39 copr_base 33 k libcom_err x86_64 1.47.0-1.fc39 fedora 26 k libcurl x86_64 8.2.0-1.fc39 fedora 324 k libdb x86_64 5.3.28-55.fc38 fedora 758 k libeconf x86_64 0.4.0-5.fc38 fedora 27 k libevent x86_64 2.1.12-8.fc38 fedora 257 k libfdisk x86_64 2.39.1-2.fc39 copr_base 163 k libffi x86_64 3.4.4-3.fc39 fedora 40 k libgcc x86_64 13.1.1-4.fc39 fedora 107 k libgomp x86_64 13.1.1-4.fc39 fedora 317 k libidn2 x86_64 2.3.4-2.fc38 fedora 160 k libmount x86_64 2.39.1-2.fc39 copr_base 155 k libnghttp2 x86_64 1.55.1-1.fc39 fedora 75 k libnsl2 x86_64 2.0.0-5.fc38 fedora 30 k libpkgconf x86_64 1.9.5-1.fc39 fedora 38 k libpsl x86_64 0.21.2-3.fc39 fedora 63 k libpwquality x86_64 1.4.5-6.fc39 copr_base 109 k libselinux x86_64 3.5-5.fc39 copr_base 87 k libsemanage x86_64 3.5-4.fc39 copr_base 120 k libsepol x86_64 3.5-1.fc39 fedora 324 k libsigsegv x86_64 2.14-4.fc38 fedora 27 k libsmartcols x86_64 2.39.1-2.fc39 copr_base 68 k libssh x86_64 0.10.5-1.fc39 fedora 211 k libssh-config noarch 0.10.5-1.fc39 fedora 9.0 k libstdc++ x86_64 13.1.1-4.fc39 fedora 861 k libtasn1 x86_64 4.19.0-2.fc38 fedora 74 k libtirpc x86_64 1.3.3-1.rc1.fc39 fedora 93 k libunistring x86_64 1.1-3.fc38 fedora 545 k libunistring1.0 x86_64 1.0-1.fc38 fedora 539 k libutempter x86_64 1.2.1-9.fc39 fedora 26 k libuuid x86_64 2.39.1-2.fc39 copr_base 29 k libverto x86_64 0.3.2-5.fc38 fedora 21 k libxcrypt x86_64 4.4.36-1.fc39 fedora 119 k libxml2 x86_64 2.10.4-3.fc39 copr_base 701 k libzstd x86_64 1.5.5-1.fc39 fedora 308 k lua-libs x86_64 5.4.4-9.fc39 fedora 133 k lua-srpm-macros noarch 1-8.fc38 fedora 8.6 k lz4-libs x86_64 1.9.4-3.fc39 fedora 67 k mpfr x86_64 4.2.0-2.fc39 fedora 343 k ncurses-base noarch 6.4-5.20230520.fc39 fedora 88 k ncurses-libs x86_64 6.4-5.20230520.fc39 fedora 336 k ocaml-srpm-macros noarch 8-1.fc39 fedora 13 k openblas-srpm-macros noarch 2-13.fc38 fedora 7.5 k openldap x86_64 2.6.4-3.fc39 fedora 254 k openssl-libs x86_64 1:3.0.8-2.fc39 fedora 2.1 M p11-kit x86_64 0.24.1-6.fc38 fedora 359 k p11-kit-trust x86_64 0.24.1-6.fc38 fedora 136 k package-notes-srpm-macros noarch 0.5-8.fc39 fedora 11 k pam x86_64 1.5.3-1.fc39 fedora 547 k pam-libs x86_64 1.5.3-1.fc39 fedora 57 k pcre2 x86_64 10.42-1.fc38.1 fedora 234 k pcre2-syntax noarch 10.42-1.fc38.1 fedora 144 k perl-srpm-macros noarch 1-50.fc39 fedora 8.3 k pkgconf x86_64 1.9.5-1.fc39 fedora 42 k pkgconf-m4 noarch 1.9.5-1.fc39 fedora 14 k pkgconf-pkg-config x86_64 1.9.5-1.fc39 fedora 9.6 k popt x86_64 1.19-2.fc38 fedora 67 k publicsuffix-list-dafsa noarch 20230614-1.fc39 fedora 57 k pyproject-srpm-macros noarch 1.9.0-1.fc39 fedora 15 k python-srpm-macros noarch 3.12-1.fc39 fedora 25 k qt5-srpm-macros noarch 5.15.10-1.fc39 fedora 7.8 k qt6-srpm-macros noarch 6.5.1-1.fc39 fedora 9.2 k readline x86_64 8.2-3.fc38 fedora 212 k rpm x86_64 4.18.91-8.fc39 copr_base 500 k rpm-build-libs x86_64 4.18.91-8.fc39 copr_base 96 k rpm-libs x86_64 4.18.91-8.fc39 copr_base 309 k rpm-sequoia x86_64 1.4.1-1.fc39 fedora 843 k rpmautospec-rpm-macros noarch 0.3.5-3.fc39 fedora 8.7 k rust-srpm-macros noarch 24-2.fc39 copr_base 13 k setup noarch 2.14.3-3.fc39 fedora 152 k sqlite-libs x86_64 3.42.0-6.fc39 fedora 678 k systemd-libs x86_64 254~rc2-4.fc39 fedora 686 k tzdata noarch 2023c-1.fc39 fedora 718 k util-linux-core x86_64 2.39.1-2.fc39 copr_base 480 k xxhash-libs x86_64 0.8.1-5.fc39 fedora 40 k xz-libs x86_64 5.4.3-1.fc39 fedora 108 k zip x86_64 3.0-36.fc38 fedora 265 k zlib x86_64 1.2.13-3.fc38 fedora 95 k zstd x86_64 1.5.5-1.fc39 fedora 482 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 154 Packages Total download size: 53 M Installed size: 180 M Downloading Packages: (1/154): file-5.44-5.fc39.x86_64.rpm 82 kB/s | 50 kB 00:00 (2/154): audit-libs-3.1.1-4.fc39.x86_64.rpm 171 kB/s | 117 kB 00:00 (3/154): libblkid-2.39.1-2.fc39.x86_64.rpm 626 kB/s | 117 kB 00:00 (4/154): libbrotli-1.0.9-13.fc39.x86_64.rpm 1.4 MB/s | 317 kB 00:00 (5/154): libcap-ng-0.8.3-7.fc39.x86_64.rpm 259 kB/s | 33 kB 00:00 (6/154): file-libs-5.44-5.fc39.x86_64.rpm 770 kB/s | 730 kB 00:00 (7/154): libfdisk-2.39.1-2.fc39.x86_64.rpm 1.7 MB/s | 163 kB 00:00 (8/154): libmount-2.39.1-2.fc39.x86_64.rpm 1.4 MB/s | 155 kB 00:00 (9/154): libpwquality-1.4.5-6.fc39.x86_64.rpm 1.1 MB/s | 109 kB 00:00 (10/154): libselinux-3.5-5.fc39.x86_64.rpm 883 kB/s | 87 kB 00:00 (11/154): libsemanage-3.5-4.fc39.x86_64.rpm 1.1 MB/s | 120 kB 00:00 (12/154): libsmartcols-2.39.1-2.fc39.x86_64.rpm 673 kB/s | 68 kB 00:00 (13/154): libuuid-2.39.1-2.fc39.x86_64.rpm 295 kB/s | 29 kB 00:00 (14/154): libxml2-2.10.4-3.fc39.x86_64.rpm 4.0 MB/s | 701 kB 00:00 (15/154): rpm-4.18.91-8.fc39.x86_64.rpm 2.4 MB/s | 500 kB 00:00 (16/154): rpm-build-4.18.91-8.fc39.x86_64.rpm 453 kB/s | 71 kB 00:00 (17/154): rpm-build-libs-4.18.91-8.fc39.x86_64. 1.0 MB/s | 96 kB 00:00 (18/154): rpm-libs-4.18.91-8.fc39.x86_64.rpm 2.6 MB/s | 309 kB 00:00 (19/154): rust-srpm-macros-24-2.fc39.noarch.rpm 117 kB/s | 13 kB 00:00 (20/154): util-linux-2.39.1-2.fc39.x86_64.rpm 7.1 MB/s | 1.1 MB 00:00 (21/154): util-linux-core-2.39.1-2.fc39.x86_64. 4.0 MB/s | 480 kB 00:00 (22/154): ansible-srpm-macros-1-10.fc39.noarch. 40 kB/s | 21 kB 00:00 (23/154): alternatives-1.24-1.fc39.x86_64.rpm 58 kB/s | 39 kB 00:00 (24/154): basesystem-11-17.fc39.noarch.rpm 21 kB/s | 7.0 kB 00:00 (25/154): authselect-1.4.2-2.fc38.x86_64.rpm 162 kB/s | 144 kB 00:00 (26/154): authselect-libs-1.4.2-2.fc38.x86_64.r 291 kB/s | 249 kB 00:00 (27/154): binutils-gold-2.40-9.fc39.x86_64.rpm 1.3 MB/s | 797 kB 00:00 (28/154): binutils-2.40-9.fc39.x86_64.rpm 4.9 MB/s | 5.6 MB 00:01 (29/154): bash-5.2.15-3.fc38.x86_64.rpm 1.5 MB/s | 1.8 MB 00:01 (30/154): bzip2-1.0.8-16.fc39.x86_64.rpm 306 kB/s | 52 kB 00:00 (31/154): bzip2-libs-1.0.8-16.fc39.x86_64.rpm 232 kB/s | 41 kB 00:00 (32/154): ca-certificates-2023.2.60-2.fc38.noar 3.5 MB/s | 845 kB 00:00 (33/154): coreutils-9.3-1.fc39.x86_64.rpm 2.9 MB/s | 1.1 MB 00:00 (34/154): cpio-2.14-2.fc39.x86_64.rpm 1.4 MB/s | 279 kB 00:00 (35/154): coreutils-common-9.3-1.fc39.x86_64.rp 5.5 MB/s | 2.1 MB 00:00 (36/154): cracklib-2.9.11-1.fc39.x86_64.rpm 435 kB/s | 94 kB 00:00 (37/154): cyrus-sasl-lib-2.1.28-10.fc39.x86_64. 2.6 MB/s | 792 kB 00:00 (38/154): curl-8.2.0-1.fc39.x86_64.rpm 837 kB/s | 348 kB 00:00 (39/154): crypto-policies-20230614-1.git5f3458e 154 kB/s | 94 kB 00:00 (40/154): debugedit-5.0-9.fc39.x86_64.rpm 483 kB/s | 77 kB 00:00 (41/154): diffutils-3.10-2.fc39.x86_64.rpm 2.1 MB/s | 398 kB 00:00 (42/154): ed-1.19-2.fc38.x86_64.rpm 449 kB/s | 78 kB 00:00 (43/154): efi-srpm-macros-5-8.fc39.noarch.rpm 166 kB/s | 22 kB 00:00 (44/154): dwz-0.15-2.fc38.x86_64.rpm 448 kB/s | 135 kB 00:00 (45/154): elfutils-debuginfod-client-0.189-3.fc 282 kB/s | 38 kB 00:00 (46/154): elfutils-0.189-3.fc39.x86_64.rpm 3.1 MB/s | 537 kB 00:00 (47/154): elfutils-default-yama-scope-0.189-3.f 88 kB/s | 13 kB 00:00 (48/154): elfutils-libelf-0.189-3.fc39.x86_64.r 1.2 MB/s | 195 kB 00:00 (49/154): elfutils-libs-0.189-3.fc39.x86_64.rpm 1.4 MB/s | 258 kB 00:00 (50/154): fedora-gpg-keys-39-0.3.noarch.rpm 671 kB/s | 127 kB 00:00 (51/154): fedora-release-39-0.21.noarch.rpm 41 kB/s | 6.9 kB 00:00 (52/154): fedora-release-common-39-0.21.noarch. 99 kB/s | 17 kB 00:00 (53/154): fedora-release-identity-basic-39-0.21 42 kB/s | 7.6 kB 00:00 (54/154): fedora-repos-39-0.3.noarch.rpm 49 kB/s | 8.8 kB 00:00 (55/154): fedora-repos-rawhide-39-0.3.noarch.rp 48 kB/s | 8.4 kB 00:00 (56/154): findutils-4.9.0-4.fc39.x86_64.rpm 3.4 MB/s | 491 kB 00:00 (57/154): fonts-srpm-macros-2.0.5-11.fc38.noarc 206 kB/s | 26 kB 00:00 (58/154): fpc-srpm-macros-1.3-7.fc38.noarch.rpm 49 kB/s | 7.8 kB 00:00 (59/154): filesystem-3.18-4.fc39.x86_64.rpm 3.1 MB/s | 1.1 MB 00:00 (60/154): gawk-5.2.2-1.fc39.x86_64.rpm 3.1 MB/s | 1.1 MB 00:00 (61/154): gdbm-libs-1.23-3.fc38.x86_64.rpm 298 kB/s | 56 kB 00:00 (62/154): ghc-srpm-macros-1.6.1-1.fc38.noarch.r 54 kB/s | 8.0 kB 00:00 (63/154): gdb-minimal-13.2-5.fc39.x86_64.rpm 8.1 MB/s | 4.2 MB 00:00 (64/154): glibc-common-2.37.9000-17.fc39.x86_64 1.9 MB/s | 346 kB 00:00 (65/154): glibc-minimal-langpack-2.37.9000-17.f 377 kB/s | 64 kB 00:00 (66/154): glibc-2.37.9000-17.fc39.x86_64.rpm 3.6 MB/s | 2.2 MB 00:00 (67/154): glibc-gconv-extra-2.37.9000-17.fc39.x 4.8 MB/s | 1.6 MB 00:00 (68/154): gmp-6.2.1-4.fc38.x86_64.rpm 1.7 MB/s | 313 kB 00:00 (69/154): gnat-srpm-macros-6-2.fc38.noarch.rpm 53 kB/s | 8.8 kB 00:00 (70/154): go-srpm-macros-3.2.0-3.fc39.noarch.rp 160 kB/s | 27 kB 00:00 (71/154): grep-3.11-1.fc39.x86_64.rpm 1.6 MB/s | 298 kB 00:00 (72/154): gzip-1.12-3.fc38.x86_64.rpm 823 kB/s | 166 kB 00:00 (73/154): info-7.0.3-2.fc39.x86_64.rpm 1.0 MB/s | 182 kB 00:00 (74/154): jansson-2.13.1-6.fc38.x86_64.rpm 252 kB/s | 44 kB 00:00 (75/154): kernel-srpm-macros-1.0-19.fc39.noarch 57 kB/s | 10 kB 00:00 (76/154): keyutils-libs-1.6.1-6.fc38.x86_64.rpm 176 kB/s | 31 kB 00:00 (77/154): krb5-libs-1.21-2.fc39.x86_64.rpm 3.4 MB/s | 765 kB 00:00 (78/154): libacl-2.3.1-7.fc39.x86_64.rpm 128 kB/s | 23 kB 00:00 (79/154): libarchive-3.6.1-5.fc39.x86_64.rpm 2.1 MB/s | 400 kB 00:00 (80/154): libattr-2.5.1-7.fc39.x86_64.rpm 99 kB/s | 18 kB 00:00 (81/154): libcap-2.48-6.fc38.x86_64.rpm 353 kB/s | 67 kB 00:00 (82/154): libcom_err-1.47.0-1.fc39.x86_64.rpm 146 kB/s | 26 kB 00:00 (83/154): libcurl-8.2.0-1.fc39.x86_64.rpm 1.6 MB/s | 324 kB 00:00 (84/154): libeconf-0.4.0-5.fc38.x86_64.rpm 169 kB/s | 27 kB 00:00 (85/154): libevent-2.1.12-8.fc38.x86_64.rpm 1.5 MB/s | 257 kB 00:00 (86/154): libdb-5.3.28-55.fc38.x86_64.rpm 2.4 MB/s | 758 kB 00:00 (87/154): libffi-3.4.4-3.fc39.x86_64.rpm 271 kB/s | 40 kB 00:00 (88/154): libgcc-13.1.1-4.fc39.x86_64.rpm 738 kB/s | 107 kB 00:00 (89/154): libidn2-2.3.4-2.fc38.x86_64.rpm 1.1 MB/s | 160 kB 00:00 (90/154): libgomp-13.1.1-4.fc39.x86_64.rpm 1.5 MB/s | 317 kB 00:00 (91/154): libnghttp2-1.55.1-1.fc39.x86_64.rpm 481 kB/s | 75 kB 00:00 (92/154): libnsl2-2.0.0-5.fc38.x86_64.rpm 200 kB/s | 30 kB 00:00 (93/154): libpkgconf-1.9.5-1.fc39.x86_64.rpm 241 kB/s | 38 kB 00:00 (94/154): libpsl-0.21.2-3.fc39.x86_64.rpm 391 kB/s | 63 kB 00:00 (95/154): libsepol-3.5-1.fc39.x86_64.rpm 2.0 MB/s | 324 kB 00:00 (96/154): libsigsegv-2.14-4.fc38.x86_64.rpm 172 kB/s | 27 kB 00:00 (97/154): libssh-0.10.5-1.fc39.x86_64.rpm 1.2 MB/s | 211 kB 00:00 (98/154): libssh-config-0.10.5-1.fc39.noarch.rp 58 kB/s | 9.0 kB 00:00 (99/154): libtasn1-4.19.0-2.fc38.x86_64.rpm 485 kB/s | 74 kB 00:00 (100/154): libtirpc-1.3.3-1.rc1.fc39.x86_64.rpm 618 kB/s | 93 kB 00:00 (101/154): libstdc++-13.1.1-4.fc39.x86_64.rpm 2.7 MB/s | 861 kB 00:00 (102/154): libunistring-1.1-3.fc38.x86_64.rpm 2.8 MB/s | 545 kB 00:00 (103/154): libunistring1.0-1.0-1.fc38.x86_64.rp 3.2 MB/s | 539 kB 00:00 (104/154): libutempter-1.2.1-9.fc39.x86_64.rpm 160 kB/s | 26 kB 00:00 (105/154): libverto-0.3.2-5.fc38.x86_64.rpm 127 kB/s | 21 kB 00:00 (106/154): libxcrypt-4.4.36-1.fc39.x86_64.rpm 736 kB/s | 119 kB 00:00 (107/154): libzstd-1.5.5-1.fc39.x86_64.rpm 1.4 MB/s | 308 kB 00:00 (108/154): lua-srpm-macros-1-8.fc38.noarch.rpm 53 kB/s | 8.6 kB 00:00 (109/154): lua-libs-5.4.4-9.fc39.x86_64.rpm 780 kB/s | 133 kB 00:00 (110/154): lz4-libs-1.9.4-3.fc39.x86_64.rpm 381 kB/s | 67 kB 00:00 (111/154): mpfr-4.2.0-2.fc39.x86_64.rpm 2.0 MB/s | 343 kB 00:00 (112/154): ncurses-base-6.4-5.20230520.fc39.noa 524 kB/s | 88 kB 00:00 (113/154): ncurses-libs-6.4-5.20230520.fc39.x86 1.4 MB/s | 336 kB 00:00 (114/154): ocaml-srpm-macros-8-1.fc39.noarch.rp 80 kB/s | 13 kB 00:00 (115/154): openblas-srpm-macros-2-13.fc38.noarc 46 kB/s | 7.5 kB 00:00 (116/154): p11-kit-0.24.1-6.fc38.x86_64.rpm 1.8 MB/s | 359 kB 00:00 (117/154): openldap-2.6.4-3.fc39.x86_64.rpm 1.1 MB/s | 254 kB 00:00 (118/154): openssl-libs-3.0.8-2.fc39.x86_64.rpm 5.8 MB/s | 2.1 MB 00:00 (119/154): p11-kit-trust-0.24.1-6.fc38.x86_64.r 780 kB/s | 136 kB 00:00 (120/154): package-notes-srpm-macros-0.5-8.fc39 67 kB/s | 11 kB 00:00 (121/154): pam-1.5.3-1.fc39.x86_64.rpm 2.8 MB/s | 547 kB 00:00 (122/154): pam-libs-1.5.3-1.fc39.x86_64.rpm 312 kB/s | 57 kB 00:00 (123/154): patch-2.7.6-21.fc39.x86_64.rpm 569 kB/s | 126 kB 00:00 (124/154): pcre2-10.42-1.fc38.1.x86_64.rpm 1.2 MB/s | 234 kB 00:00 (125/154): pcre2-syntax-10.42-1.fc38.1.noarch.r 720 kB/s | 144 kB 00:00 (126/154): 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-------------------------------------------------------------------------------- Total 3.8 MB/s | 53 MB 00:13 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary (0x18B8E74C) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-4.fc39.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.1.1-4.fc39.x86_64 1/154 Running scriptlet: libgcc-13.1.1-4.fc39.x86_64 1/154 Installing : crypto-policies-20230614-1.git5f3458e.fc39.noarc 2/154 Running scriptlet: crypto-policies-20230614-1.git5f3458e.fc39.noarc 2/154 Installing : tzdata-2023c-1.fc39.noarch 3/154 Installing : fedora-release-identity-basic-39-0.21.noarch 4/154 Installing : qt6-srpm-macros-6.5.1-1.fc39.noarch 5/154 Installing : qt5-srpm-macros-5.15.10-1.fc39.noarch 6/154 Installing : pyproject-srpm-macros-1.9.0-1.fc39.noarch 7/154 Installing : publicsuffix-list-dafsa-20230614-1.fc39.noarch 8/154 Installing : pkgconf-m4-1.9.5-1.fc39.noarch 9/154 Installing : perl-srpm-macros-1-50.fc39.noarch 10/154 Installing : pcre2-syntax-10.42-1.fc38.1.noarch 11/154 Installing : package-notes-srpm-macros-0.5-8.fc39.noarch 12/154 Installing : openblas-srpm-macros-2-13.fc38.noarch 13/154 Installing : 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11/154 Verifying : libsmartcols-2.39.1-2.fc39.x86_64 12/154 Verifying : libuuid-2.39.1-2.fc39.x86_64 13/154 Verifying : libxml2-2.10.4-3.fc39.x86_64 14/154 Verifying : rpm-4.18.91-8.fc39.x86_64 15/154 Verifying : rpm-build-4.18.91-8.fc39.x86_64 16/154 Verifying : rpm-build-libs-4.18.91-8.fc39.x86_64 17/154 Verifying : rpm-libs-4.18.91-8.fc39.x86_64 18/154 Verifying : rust-srpm-macros-24-2.fc39.noarch 19/154 Verifying : util-linux-2.39.1-2.fc39.x86_64 20/154 Verifying : util-linux-core-2.39.1-2.fc39.x86_64 21/154 Verifying : alternatives-1.24-1.fc39.x86_64 22/154 Verifying : ansible-srpm-macros-1-10.fc39.noarch 23/154 Verifying : authselect-1.4.2-2.fc38.x86_64 24/154 Verifying : authselect-libs-1.4.2-2.fc38.x86_64 25/154 Verifying : basesystem-11-17.fc39.noarch 26/154 Verifying : bash-5.2.15-3.fc38.x86_64 27/154 Verifying : binutils-2.40-9.fc39.x86_64 28/154 Verifying : binutils-gold-2.40-9.fc39.x86_64 29/154 Verifying : bzip2-1.0.8-16.fc39.x86_64 30/154 Verifying : bzip2-libs-1.0.8-16.fc39.x86_64 31/154 Verifying : ca-certificates-2023.2.60-2.fc38.noarch 32/154 Verifying : coreutils-9.3-1.fc39.x86_64 33/154 Verifying : coreutils-common-9.3-1.fc39.x86_64 34/154 Verifying : cpio-2.14-2.fc39.x86_64 35/154 Verifying : cracklib-2.9.11-1.fc39.x86_64 36/154 Verifying : crypto-policies-20230614-1.git5f3458e.fc39.noarc 37/154 Verifying : curl-8.2.0-1.fc39.x86_64 38/154 Verifying : cyrus-sasl-lib-2.1.28-10.fc39.x86_64 39/154 Verifying : debugedit-5.0-9.fc39.x86_64 40/154 Verifying : diffutils-3.10-2.fc39.x86_64 41/154 Verifying : dwz-0.15-2.fc38.x86_64 42/154 Verifying : ed-1.19-2.fc38.x86_64 43/154 Verifying : efi-srpm-macros-5-8.fc39.noarch 44/154 Verifying : elfutils-0.189-3.fc39.x86_64 45/154 Verifying : elfutils-debuginfod-client-0.189-3.fc39.x86_64 46/154 Verifying : elfutils-default-yama-scope-0.189-3.fc39.noarch 47/154 Verifying : elfutils-libelf-0.189-3.fc39.x86_64 48/154 Verifying : elfutils-libs-0.189-3.fc39.x86_64 49/154 Verifying : fedora-gpg-keys-39-0.3.noarch 50/154 Verifying : fedora-release-39-0.21.noarch 51/154 Verifying : fedora-release-common-39-0.21.noarch 52/154 Verifying : fedora-release-identity-basic-39-0.21.noarch 53/154 Verifying : fedora-repos-39-0.3.noarch 54/154 Verifying : fedora-repos-rawhide-39-0.3.noarch 55/154 Verifying : filesystem-3.18-4.fc39.x86_64 56/154 Verifying : findutils-1:4.9.0-4.fc39.x86_64 57/154 Verifying : fonts-srpm-macros-1:2.0.5-11.fc38.noarch 58/154 Verifying : fpc-srpm-macros-1.3-7.fc38.noarch 59/154 Verifying : gawk-5.2.2-1.fc39.x86_64 60/154 Verifying : gdb-minimal-13.2-5.fc39.x86_64 61/154 Verifying : gdbm-libs-1:1.23-3.fc38.x86_64 62/154 Verifying : ghc-srpm-macros-1.6.1-1.fc38.noarch 63/154 Verifying : glibc-2.37.9000-17.fc39.x86_64 64/154 Verifying : glibc-common-2.37.9000-17.fc39.x86_64 65/154 Verifying : glibc-gconv-extra-2.37.9000-17.fc39.x86_64 66/154 Verifying : glibc-minimal-langpack-2.37.9000-17.fc39.x86_64 67/154 Verifying : gmp-1:6.2.1-4.fc38.x86_64 68/154 Verifying : gnat-srpm-macros-6-2.fc38.noarch 69/154 Verifying : go-srpm-macros-3.2.0-3.fc39.noarch 70/154 Verifying : grep-3.11-1.fc39.x86_64 71/154 Verifying : gzip-1.12-3.fc38.x86_64 72/154 Verifying : info-7.0.3-2.fc39.x86_64 73/154 Verifying : jansson-2.13.1-6.fc38.x86_64 74/154 Verifying : kernel-srpm-macros-1.0-19.fc39.noarch 75/154 Verifying : keyutils-libs-1.6.1-6.fc38.x86_64 76/154 Verifying : krb5-libs-1.21-2.fc39.x86_64 77/154 Verifying : libacl-2.3.1-7.fc39.x86_64 78/154 Verifying : libarchive-3.6.1-5.fc39.x86_64 79/154 Verifying : libattr-2.5.1-7.fc39.x86_64 80/154 Verifying : libcap-2.48-6.fc38.x86_64 81/154 Verifying : libcom_err-1.47.0-1.fc39.x86_64 82/154 Verifying : libcurl-8.2.0-1.fc39.x86_64 83/154 Verifying : libdb-5.3.28-55.fc38.x86_64 84/154 Verifying : libeconf-0.4.0-5.fc38.x86_64 85/154 Verifying : libevent-2.1.12-8.fc38.x86_64 86/154 Verifying : libffi-3.4.4-3.fc39.x86_64 87/154 Verifying : libgcc-13.1.1-4.fc39.x86_64 88/154 Verifying : libgomp-13.1.1-4.fc39.x86_64 89/154 Verifying : libidn2-2.3.4-2.fc38.x86_64 90/154 Verifying : libnghttp2-1.55.1-1.fc39.x86_64 91/154 Verifying : libnsl2-2.0.0-5.fc38.x86_64 92/154 Verifying : libpkgconf-1.9.5-1.fc39.x86_64 93/154 Verifying : libpsl-0.21.2-3.fc39.x86_64 94/154 Verifying : libsepol-3.5-1.fc39.x86_64 95/154 Verifying : libsigsegv-2.14-4.fc38.x86_64 96/154 Verifying : libssh-0.10.5-1.fc39.x86_64 97/154 Verifying : libssh-config-0.10.5-1.fc39.noarch 98/154 Verifying : libstdc++-13.1.1-4.fc39.x86_64 99/154 Verifying : libtasn1-4.19.0-2.fc38.x86_64 100/154 Verifying : libtirpc-1.3.3-1.rc1.fc39.x86_64 101/154 Verifying : libunistring-1.1-3.fc38.x86_64 102/154 Verifying : libunistring1.0-1.0-1.fc38.x86_64 103/154 Verifying : libutempter-1.2.1-9.fc39.x86_64 104/154 Verifying : libverto-0.3.2-5.fc38.x86_64 105/154 Verifying : libxcrypt-4.4.36-1.fc39.x86_64 106/154 Verifying : libzstd-1.5.5-1.fc39.x86_64 107/154 Verifying : lua-libs-5.4.4-9.fc39.x86_64 108/154 Verifying : lua-srpm-macros-1-8.fc38.noarch 109/154 Verifying : lz4-libs-1.9.4-3.fc39.x86_64 110/154 Verifying : mpfr-4.2.0-2.fc39.x86_64 111/154 Verifying : ncurses-base-6.4-5.20230520.fc39.noarch 112/154 Verifying : ncurses-libs-6.4-5.20230520.fc39.x86_64 113/154 Verifying : ocaml-srpm-macros-8-1.fc39.noarch 114/154 Verifying : openblas-srpm-macros-2-13.fc38.noarch 115/154 Verifying : openldap-2.6.4-3.fc39.x86_64 116/154 Verifying : openssl-libs-1:3.0.8-2.fc39.x86_64 117/154 Verifying : p11-kit-0.24.1-6.fc38.x86_64 118/154 Verifying : p11-kit-trust-0.24.1-6.fc38.x86_64 119/154 Verifying : package-notes-srpm-macros-0.5-8.fc39.noarch 120/154 Verifying : pam-1.5.3-1.fc39.x86_64 121/154 Verifying : pam-libs-1.5.3-1.fc39.x86_64 122/154 Verifying : patch-2.7.6-21.fc39.x86_64 123/154 Verifying : pcre2-10.42-1.fc38.1.x86_64 124/154 Verifying : pcre2-syntax-10.42-1.fc38.1.noarch 125/154 Verifying : perl-srpm-macros-1-50.fc39.noarch 126/154 Verifying : pkgconf-1.9.5-1.fc39.x86_64 127/154 Verifying : pkgconf-m4-1.9.5-1.fc39.noarch 128/154 Verifying : pkgconf-pkg-config-1.9.5-1.fc39.x86_64 129/154 Verifying : popt-1.19-2.fc38.x86_64 130/154 Verifying : publicsuffix-list-dafsa-20230614-1.fc39.noarch 131/154 Verifying : pyproject-srpm-macros-1.9.0-1.fc39.noarch 132/154 Verifying : python-srpm-macros-3.12-1.fc39.noarch 133/154 Verifying : qt5-srpm-macros-5.15.10-1.fc39.noarch 134/154 Verifying : qt6-srpm-macros-6.5.1-1.fc39.noarch 135/154 Verifying : readline-8.2-3.fc38.x86_64 136/154 Verifying : redhat-rpm-config-261-1.fc39.noarch 137/154 Verifying : rpm-sequoia-1.4.1-1.fc39.x86_64 138/154 Verifying : rpmautospec-rpm-macros-0.3.5-3.fc39.noarch 139/154 Verifying : sed-4.8-12.fc38.x86_64 140/154 Verifying : setup-2.14.3-3.fc39.noarch 141/154 Verifying : shadow-utils-2:4.13-7.fc39.x86_64 142/154 Verifying : sqlite-libs-3.42.0-6.fc39.x86_64 143/154 Verifying : systemd-libs-254~rc2-4.fc39.x86_64 144/154 Verifying : tar-2:1.34-8.fc39.x86_64 145/154 Verifying : tzdata-2023c-1.fc39.noarch 146/154 Verifying : unzip-6.0-60.fc38.x86_64 147/154 Verifying : which-2.21-39.fc39.x86_64 148/154 Verifying : xxhash-libs-0.8.1-5.fc39.x86_64 149/154 Verifying : xz-5.4.3-1.fc39.x86_64 150/154 Verifying : xz-libs-5.4.3-1.fc39.x86_64 151/154 Verifying : zip-3.0-36.fc38.x86_64 152/154 Verifying : zlib-1.2.13-3.fc38.x86_64 153/154 Verifying : zstd-1.5.5-1.fc39.x86_64 154/154 Installed: alternatives-1.24-1.fc39.x86_64 ansible-srpm-macros-1-10.fc39.noarch audit-libs-3.1.1-4.fc39.x86_64 authselect-1.4.2-2.fc38.x86_64 authselect-libs-1.4.2-2.fc38.x86_64 basesystem-11-17.fc39.noarch bash-5.2.15-3.fc38.x86_64 binutils-2.40-9.fc39.x86_64 binutils-gold-2.40-9.fc39.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.60-2.fc38.noarch coreutils-9.3-1.fc39.x86_64 coreutils-common-9.3-1.fc39.x86_64 cpio-2.14-2.fc39.x86_64 cracklib-2.9.11-1.fc39.x86_64 crypto-policies-20230614-1.git5f3458e.fc39.noarch curl-8.2.0-1.fc39.x86_64 cyrus-sasl-lib-2.1.28-10.fc39.x86_64 debugedit-5.0-9.fc39.x86_64 diffutils-3.10-2.fc39.x86_64 dwz-0.15-2.fc38.x86_64 ed-1.19-2.fc38.x86_64 efi-srpm-macros-5-8.fc39.noarch elfutils-0.189-3.fc39.x86_64 elfutils-debuginfod-client-0.189-3.fc39.x86_64 elfutils-default-yama-scope-0.189-3.fc39.noarch elfutils-libelf-0.189-3.fc39.x86_64 elfutils-libs-0.189-3.fc39.x86_64 fedora-gpg-keys-39-0.3.noarch fedora-release-39-0.21.noarch fedora-release-common-39-0.21.noarch fedora-release-identity-basic-39-0.21.noarch fedora-repos-39-0.3.noarch fedora-repos-rawhide-39-0.3.noarch file-5.44-5.fc39.x86_64 file-libs-5.44-5.fc39.x86_64 filesystem-3.18-4.fc39.x86_64 findutils-1:4.9.0-4.fc39.x86_64 fonts-srpm-macros-1:2.0.5-11.fc38.noarch fpc-srpm-macros-1.3-7.fc38.noarch gawk-5.2.2-1.fc39.x86_64 gdb-minimal-13.2-5.fc39.x86_64 gdbm-libs-1:1.23-3.fc38.x86_64 ghc-srpm-macros-1.6.1-1.fc38.noarch glibc-2.37.9000-17.fc39.x86_64 glibc-common-2.37.9000-17.fc39.x86_64 glibc-gconv-extra-2.37.9000-17.fc39.x86_64 glibc-minimal-langpack-2.37.9000-17.fc39.x86_64 gmp-1:6.2.1-4.fc38.x86_64 gnat-srpm-macros-6-2.fc38.noarch go-srpm-macros-3.2.0-3.fc39.noarch grep-3.11-1.fc39.x86_64 gzip-1.12-3.fc38.x86_64 info-7.0.3-2.fc39.x86_64 jansson-2.13.1-6.fc38.x86_64 kernel-srpm-macros-1.0-19.fc39.noarch keyutils-libs-1.6.1-6.fc38.x86_64 krb5-libs-1.21-2.fc39.x86_64 libacl-2.3.1-7.fc39.x86_64 libarchive-3.6.1-5.fc39.x86_64 libattr-2.5.1-7.fc39.x86_64 libblkid-2.39.1-2.fc39.x86_64 libbrotli-1.0.9-13.fc39.x86_64 libcap-2.48-6.fc38.x86_64 libcap-ng-0.8.3-7.fc39.x86_64 libcom_err-1.47.0-1.fc39.x86_64 libcurl-8.2.0-1.fc39.x86_64 libdb-5.3.28-55.fc38.x86_64 libeconf-0.4.0-5.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 libfdisk-2.39.1-2.fc39.x86_64 libffi-3.4.4-3.fc39.x86_64 libgcc-13.1.1-4.fc39.x86_64 libgomp-13.1.1-4.fc39.x86_64 libidn2-2.3.4-2.fc38.x86_64 libmount-2.39.1-2.fc39.x86_64 libnghttp2-1.55.1-1.fc39.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libpkgconf-1.9.5-1.fc39.x86_64 libpsl-0.21.2-3.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-1.fc39.x86_64 libsigsegv-2.14-4.fc38.x86_64 libsmartcols-2.39.1-2.fc39.x86_64 libssh-0.10.5-1.fc39.x86_64 libssh-config-0.10.5-1.fc39.noarch libstdc++-13.1.1-4.fc39.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libtirpc-1.3.3-1.rc1.fc39.x86_64 libunistring-1.1-3.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 libutempter-1.2.1-9.fc39.x86_64 libuuid-2.39.1-2.fc39.x86_64 libverto-0.3.2-5.fc38.x86_64 libxcrypt-4.4.36-1.fc39.x86_64 libxml2-2.10.4-3.fc39.x86_64 libzstd-1.5.5-1.fc39.x86_64 lua-libs-5.4.4-9.fc39.x86_64 lua-srpm-macros-1-8.fc38.noarch lz4-libs-1.9.4-3.fc39.x86_64 mpfr-4.2.0-2.fc39.x86_64 ncurses-base-6.4-5.20230520.fc39.noarch ncurses-libs-6.4-5.20230520.fc39.x86_64 ocaml-srpm-macros-8-1.fc39.noarch openblas-srpm-macros-2-13.fc38.noarch openldap-2.6.4-3.fc39.x86_64 openssl-libs-1:3.0.8-2.fc39.x86_64 p11-kit-0.24.1-6.fc38.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 package-notes-srpm-macros-0.5-8.fc39.noarch pam-1.5.3-1.fc39.x86_64 pam-libs-1.5.3-1.fc39.x86_64 patch-2.7.6-21.fc39.x86_64 pcre2-10.42-1.fc38.1.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch perl-srpm-macros-1-50.fc39.noarch pkgconf-1.9.5-1.fc39.x86_64 pkgconf-m4-1.9.5-1.fc39.noarch pkgconf-pkg-config-1.9.5-1.fc39.x86_64 popt-1.19-2.fc38.x86_64 publicsuffix-list-dafsa-20230614-1.fc39.noarch pyproject-srpm-macros-1.9.0-1.fc39.noarch python-srpm-macros-3.12-1.fc39.noarch qt5-srpm-macros-5.15.10-1.fc39.noarch qt6-srpm-macros-6.5.1-1.fc39.noarch readline-8.2-3.fc38.x86_64 redhat-rpm-config-261-1.fc39.noarch rpm-4.18.91-8.fc39.x86_64 rpm-build-4.18.91-8.fc39.x86_64 rpm-build-libs-4.18.91-8.fc39.x86_64 rpm-libs-4.18.91-8.fc39.x86_64 rpm-sequoia-1.4.1-1.fc39.x86_64 rpmautospec-rpm-macros-0.3.5-3.fc39.noarch rust-srpm-macros-24-2.fc39.noarch sed-4.8-12.fc38.x86_64 setup-2.14.3-3.fc39.noarch shadow-utils-2:4.13-7.fc39.x86_64 sqlite-libs-3.42.0-6.fc39.x86_64 systemd-libs-254~rc2-4.fc39.x86_64 tar-2:1.34-8.fc39.x86_64 tzdata-2023c-1.fc39.noarch unzip-6.0-60.fc38.x86_64 util-linux-2.39.1-2.fc39.x86_64 util-linux-core-2.39.1-2.fc39.x86_64 which-2.21-39.fc39.x86_64 xxhash-libs-0.8.1-5.fc39.x86_64 xz-5.4.3-1.fc39.x86_64 xz-libs-5.4.3-1.fc39.x86_64 zip-3.0-36.fc38.x86_64 zlib-1.2.13-3.fc38.x86_64 zstd-1.5.5-1.fc39.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: libcurl-8.2.0-1.fc39.x86_64 libstdc++-13.1.1-4.fc39.x86_64 gpg-pubkey-eb10b464-6202d9c6 libidn2-2.3.4-2.fc38.x86_64 ca-certificates-2023.2.60-2.fc38.noarch fedora-release-39-0.21.noarch libarchive-3.6.1-5.fc39.x86_64 libacl-2.3.1-7.fc39.x86_64 libssh-0.10.5-1.fc39.x86_64 dwz-0.15-2.fc38.x86_64 zip-3.0-36.fc38.x86_64 libffi-3.4.4-3.fc39.x86_64 krb5-libs-1.21-2.fc39.x86_64 jansson-2.13.1-6.fc38.x86_64 zstd-1.5.5-1.fc39.x86_64 go-srpm-macros-3.2.0-3.fc39.noarch libpwquality-1.4.5-6.fc39.x86_64 libxcrypt-4.4.36-1.fc39.x86_64 ncurses-base-6.4-5.20230520.fc39.noarch ncurses-libs-6.4-5.20230520.fc39.x86_64 libdb-5.3.28-55.fc38.x86_64 fedora-repos-39-0.3.noarch binutils-gold-2.40-9.fc39.x86_64 rpm-sequoia-1.4.1-1.fc39.x86_64 libuuid-2.39.1-2.fc39.x86_64 util-linux-core-2.39.1-2.fc39.x86_64 openssl-libs-3.0.8-2.fc39.x86_64 bash-5.2.15-3.fc38.x86_64 libcap-2.48-6.fc38.x86_64 libunistring1.0-1.0-1.fc38.x86_64 binutils-2.40-9.fc39.x86_64 fonts-srpm-macros-2.0.5-11.fc38.noarch fedora-gpg-keys-39-0.3.noarch glibc-minimal-langpack-2.37.9000-17.fc39.x86_64 libbrotli-1.0.9-13.fc39.x86_64 cyrus-sasl-lib-2.1.28-10.fc39.x86_64 openldap-2.6.4-3.fc39.x86_64 unzip-6.0-60.fc38.x86_64 redhat-rpm-config-261-1.fc39.noarch libtirpc-1.3.3-1.rc1.fc39.x86_64 authselect-1.4.2-2.fc38.x86_64 lz4-libs-1.9.4-3.fc39.x86_64 pam-libs-1.5.3-1.fc39.x86_64 tzdata-2023c-1.fc39.noarch pkgconf-pkg-config-1.9.5-1.fc39.x86_64 libxml2-2.10.4-3.fc39.x86_64 lua-libs-5.4.4-9.fc39.x86_64 libgomp-13.1.1-4.fc39.x86_64 fedora-release-identity-basic-39-0.21.noarch pkgconf-1.9.5-1.fc39.x86_64 gnat-srpm-macros-6-2.fc38.noarch curl-8.2.0-1.fc39.x86_64 pkgconf-m4-1.9.5-1.fc39.noarch libmount-2.39.1-2.fc39.x86_64 libpkgconf-1.9.5-1.fc39.x86_64 lua-srpm-macros-1-8.fc38.noarch bzip2-1.0.8-16.fc39.x86_64 xxhash-libs-0.8.1-5.fc39.x86_64 rust-srpm-macros-24-2.fc39.noarch filesystem-3.18-4.fc39.x86_64 xz-libs-5.4.3-1.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 keyutils-libs-1.6.1-6.fc38.x86_64 gawk-5.2.2-1.fc39.x86_64 libssh-config-0.10.5-1.fc39.noarch elfutils-default-yama-scope-0.189-3.fc39.noarch gpg-pubkey-18b8e74c-62f2920f libunistring-1.1-3.fc38.x86_64 libpsl-0.21.2-3.fc39.x86_64 pcre2-10.42-1.fc38.1.x86_64 fedora-repos-rawhide-39-0.3.noarch libselinux-3.5-5.fc39.x86_64 fpc-srpm-macros-1.3-7.fc38.noarch setup-2.14.3-3.fc39.noarch rpm-libs-4.18.91-8.fc39.x86_64 libcap-ng-0.8.3-7.fc39.x86_64 libzstd-1.5.5-1.fc39.x86_64 authselect-libs-1.4.2-2.fc38.x86_64 file-libs-5.44-5.fc39.x86_64 libcom_err-1.47.0-1.fc39.x86_64 package-notes-srpm-macros-0.5-8.fc39.noarch glibc-2.37.9000-17.fc39.x86_64 systemd-libs-254~rc2-4.fc39.x86_64 sed-4.8-12.fc38.x86_64 libtasn1-4.19.0-2.fc38.x86_64 libsepol-3.5-1.fc39.x86_64 elfutils-libelf-0.189-3.fc39.x86_64 libsmartcols-2.39.1-2.fc39.x86_64 efi-srpm-macros-5-8.fc39.noarch which-2.21-39.fc39.x86_64 ghc-srpm-macros-1.6.1-1.fc38.noarch rpmautospec-rpm-macros-0.3.5-3.fc39.noarch python-srpm-macros-3.12-1.fc39.noarch libverto-0.3.2-5.fc38.x86_64 readline-8.2-3.fc38.x86_64 debugedit-5.0-9.fc39.x86_64 findutils-4.9.0-4.fc39.x86_64 zlib-1.2.13-3.fc38.x86_64 qt6-srpm-macros-6.5.1-1.fc39.noarch fedora-release-common-39-0.21.noarch pam-1.5.3-1.fc39.x86_64 p11-kit-trust-0.24.1-6.fc38.x86_64 publicsuffix-list-dafsa-20230614-1.fc39.noarch elfutils-debuginfod-client-0.189-3.fc39.x86_64 tar-1.34-8.fc39.x86_64 rpm-4.18.91-8.fc39.x86_64 elfutils-0.189-3.fc39.x86_64 glibc-common-2.37.9000-17.fc39.x86_64 patch-2.7.6-21.fc39.x86_64 libsigsegv-2.14-4.fc38.x86_64 libeconf-0.4.0-5.fc38.x86_64 libevent-2.1.12-8.fc38.x86_64 info-7.0.3-2.fc39.x86_64 popt-1.19-2.fc38.x86_64 coreutils-9.3-1.fc39.x86_64 gzip-1.12-3.fc38.x86_64 gdb-minimal-13.2-5.fc39.x86_64 qt5-srpm-macros-5.15.10-1.fc39.noarch elfutils-libs-0.189-3.fc39.x86_64 glibc-gconv-extra-2.37.9000-17.fc39.x86_64 libgcc-13.1.1-4.fc39.x86_64 libutempter-1.2.1-9.fc39.x86_64 xz-5.4.3-1.fc39.x86_64 libnghttp2-1.55.1-1.fc39.x86_64 rpm-build-4.18.91-8.fc39.x86_64 pyproject-srpm-macros-1.9.0-1.fc39.noarch libattr-2.5.1-7.fc39.x86_64 mpfr-4.2.0-2.fc39.x86_64 perl-srpm-macros-1-50.fc39.noarch grep-3.11-1.fc39.x86_64 basesystem-11-17.fc39.noarch openblas-srpm-macros-2-13.fc38.noarch libsemanage-3.5-4.fc39.x86_64 libnsl2-2.0.0-5.fc38.x86_64 libblkid-2.39.1-2.fc39.x86_64 alternatives-1.24-1.fc39.x86_64 ansible-srpm-macros-1-10.fc39.noarch shadow-utils-4.13-7.fc39.x86_64 libfdisk-2.39.1-2.fc39.x86_64 coreutils-common-9.3-1.fc39.x86_64 util-linux-2.39.1-2.fc39.x86_64 crypto-policies-20230614-1.git5f3458e.fc39.noarch ocaml-srpm-macros-8-1.fc39.noarch audit-libs-3.1.1-4.fc39.x86_64 rpm-build-libs-4.18.91-8.fc39.x86_64 file-5.44-5.fc39.x86_64 cpio-2.14-2.fc39.x86_64 ed-1.19-2.fc38.x86_64 p11-kit-0.24.1-6.fc38.x86_64 diffutils-3.10-2.fc39.x86_64 gmp-6.2.1-4.fc38.x86_64 cracklib-2.9.11-1.fc39.x86_64 pcre2-syntax-10.42-1.fc38.1.noarch kernel-srpm-macros-1.0-19.fc39.noarch sqlite-libs-3.42.0-6.fc39.x86_64 gdbm-libs-1.23-3.fc38.x86_64 Start: buildsrpm Start: rpmbuild -bs warning: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689984000 Wrote: /builddir/build/SRPMS/smoldyn-2.67.3-6.fc39.src.rpm RPM build warnings: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1689991478.342716/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1689991478.342716/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1689991478.342716/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-fte6e8ue/smoldyn/smoldyn.spec) Config(child) 1 minutes 48 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/smoldyn-2.67.3-6.fc39.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1689991478.342716 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 4.1 starting (python version = 3.11.3, NVR = mock-4.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/smoldyn-2.67.3-6.fc39.src.rpm) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1689991478.342716/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1689991478.342716/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (fallback) Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1689991478.342716/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 4.1 INFO: Mock Version: 4.1 INFO: Package manager dnf detected and used (direct choice) Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 5.4 kB/s | 2.2 kB 00:00 fedora 131 kB/s | 18 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for smoldyn-2.67.3-6.fc39.src.rpm Start: build setup for smoldyn-2.67.3-6.fc39.src.rpm warning: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689984000 Wrote: /builddir/build/SRPMS/smoldyn-2.67.3-6.fc39.src.rpm RPM build warnings: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 7.4 kB/s | 2.2 kB 00:00 fedora 150 kB/s | 18 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing: boost-devel x86_64 1.81.0-5.fc39 fedora 14 M cmake x86_64 3.27.0-1.fc39 fedora 8.0 M freeglut-devel x86_64 3.4.0-3.fc39 fedora 949 k gcc x86_64 13.1.1-4.fc39 fedora 34 M gcc-c++ x86_64 13.1.1-4.fc39 fedora 13 M libXi-devel x86_64 1.8.1-1.fc39 fedora 116 k libXmu-devel x86_64 1.1.4-2.fc38 fedora 27 k libglvnd-devel x86_64 1:1.6.0-2.fc38 fedora 163 k libtiff-devel x86_64 4.4.0-5.fc38 fedora 546 k make x86_64 1:4.4.1-1.fc39 fedora 589 k perl-macros noarch 4:5.38.0-499.fc39 fedora 12 k pybind11-devel x86_64 2.10.4-2.fc39 fedora 172 k python3-devel x86_64 3.12.0~b4-1.fc39 fedora 310 k python3-flaky noarch 3.7.0-11.fc39 fedora 45 k python3-matplotlib x86_64 3.7.2-1.fc39 fedora 4.2 M python3-setuptools noarch 67.7.2-5.fc39 fedora 1.5 M python3-wheel noarch 1:0.40.0-3.fc39 fedora 162 k xorg-x11-server-Xvfb x86_64 1.20.14-23.fc39 fedora 888 k zlib-devel x86_64 1.2.13-3.fc38 fedora 45 k Installing dependencies: abattis-cantarell-vf-fonts noarch 0.301-9.fc38 fedora 121 k annobin-docs noarch 12.21-1.fc39 fedora 95 k annobin-plugin-gcc x86_64 12.21-1.fc39 fedora 959 k boost x86_64 1.81.0-5.fc39 fedora 14 k boost-atomic x86_64 1.81.0-5.fc39 fedora 20 k boost-chrono x86_64 1.81.0-5.fc39 fedora 26 k boost-container x86_64 1.81.0-5.fc39 fedora 40 k boost-context x86_64 1.81.0-5.fc39 fedora 17 k boost-contract x86_64 1.81.0-5.fc39 fedora 46 k boost-coroutine x86_64 1.81.0-5.fc39 fedora 20 k boost-date-time x86_64 1.81.0-5.fc39 fedora 16 k boost-fiber x86_64 1.81.0-5.fc39 fedora 42 k boost-filesystem x86_64 1.81.0-5.fc39 fedora 68 k boost-graph x86_64 1.81.0-5.fc39 fedora 153 k boost-iostreams x86_64 1.81.0-5.fc39 fedora 42 k boost-json x86_64 1.81.0-5.fc39 fedora 110 k boost-locale x86_64 1.81.0-5.fc39 fedora 222 k boost-log x86_64 1.81.0-5.fc39 fedora 493 k boost-math x86_64 1.81.0-5.fc39 fedora 219 k boost-nowide x86_64 1.81.0-5.fc39 fedora 21 k boost-numpy3 x86_64 1.81.0-5.fc39 fedora 30 k boost-program-options x86_64 1.81.0-5.fc39 fedora 110 k boost-python3 x86_64 1.81.0-5.fc39 fedora 97 k boost-random x86_64 1.81.0-5.fc39 fedora 24 k boost-regex x86_64 1.81.0-5.fc39 fedora 112 k boost-serialization x86_64 1.81.0-5.fc39 fedora 135 k boost-stacktrace x86_64 1.81.0-5.fc39 fedora 30 k boost-system x86_64 1.81.0-5.fc39 fedora 16 k boost-test x86_64 1.81.0-5.fc39 fedora 241 k boost-thread x86_64 1.81.0-5.fc39 fedora 59 k boost-timer x86_64 1.81.0-5.fc39 fedora 24 k boost-type_erasure x86_64 1.81.0-5.fc39 fedora 34 k boost-wave x86_64 1.81.0-5.fc39 fedora 225 k cairo x86_64 1.17.8-4.fc39 fedora 706 k cmake-data noarch 3.27.0-1.fc39 fedora 2.2 M cmake-filesystem x86_64 3.27.0-1.fc39 fedora 18 k cmake-rpm-macros noarch 3.27.0-1.fc39 fedora 17 k cpp x86_64 13.1.1-4.fc39 fedora 11 M default-fonts-core-sans noarch 4.0-1.fc39 fedora 31 k dejavu-sans-fonts noarch 2.37-20.fc38 fedora 1.3 M emacs-filesystem noarch 1:28.2-6.fc39 fedora 7.8 k expat x86_64 2.5.0-2.fc38 fedora 110 k flexiblas x86_64 3.3.1-3.fc39 fedora 33 k flexiblas-netlib x86_64 3.3.1-3.fc39 fedora 3.1 M flexiblas-openblas-openmp x86_64 3.3.1-3.fc39 fedora 17 k fontconfig x86_64 2.14.2-3.fc39 fedora 296 k fonts-filesystem noarch 1:2.0.5-11.fc38 fedora 8.1 k freeglut x86_64 3.4.0-3.fc39 fedora 155 k freetype x86_64 2.13.1-1.fc39 fedora 414 k fribidi x86_64 1.0.13-1.fc39 fedora 90 k gc x86_64 8.2.2-3.fc38 fedora 110 k gcc-plugin-annobin x86_64 13.1.1-4.fc39 fedora 45 k gl-manpages noarch 1.1-28.20190306.fc39 fedora 1.2 M glib2 x86_64 2.77.0-7.fc39 fedora 2.8 M glibc-devel x86_64 2.37.9000-17.fc39 fedora 80 k glibc-headers-x86 noarch 2.37.9000-17.fc39 fedora 563 k gnutls x86_64 3.8.0-6.fc39 fedora 1.1 M google-noto-fonts-common noarch 20230601-3.fc39 fedora 16 k google-noto-sans-vf-fonts noarch 20230601-3.fc39 fedora 582 k graphite2 x86_64 1.3.14-11.fc38 fedora 95 k groff-base x86_64 1.23.0-1.fc39 fedora 1.1 M guile22 x86_64 2.2.7-8.fc39 fedora 6.5 M harfbuzz x86_64 8.0.1-2.fc39 fedora 937 k hwdata noarch 0.372-1.fc39 fedora 1.6 M jbigkit-libs x86_64 2.1-25.fc38 fedora 53 k jsoncpp x86_64 1.9.5-4.fc38 fedora 97 k kernel-headers x86_64 6.5.0-0.rc2.git0.1.fc39 fedora 1.5 M lcms2 x86_64 2.15-1.fc39 fedora 177 k libICE x86_64 1.0.10-10.fc38 fedora 71 k libICE-devel x86_64 1.0.10-10.fc38 fedora 46 k libSM x86_64 1.2.3-12.fc38 fedora 41 k libSM-devel x86_64 1.2.3-12.fc38 fedora 12 k libX11 x86_64 1.8.6-1.fc39 fedora 649 k libX11-common noarch 1.8.6-1.fc39 fedora 175 k libX11-devel x86_64 1.8.6-1.fc39 fedora 1.0 M libX11-xcb x86_64 1.8.6-1.fc39 fedora 11 k libXau x86_64 1.0.11-2.fc38 fedora 32 k libXau-devel x86_64 1.0.11-2.fc38 fedora 14 k libXdmcp x86_64 1.1.3-10.fc38 fedora 35 k libXext x86_64 1.3.5-2.fc38 fedora 39 k libXext-devel x86_64 1.3.5-2.fc38 fedora 85 k libXfixes x86_64 6.0.0-5.fc38 fedora 19 k libXfixes-devel x86_64 6.0.0-5.fc38 fedora 12 k libXfont2 x86_64 2.0.3-14.fc38 fedora 144 k libXft x86_64 2.3.8-2.fc39 fedora 72 k libXi x86_64 1.8.1-1.fc39 fedora 40 k libXmu x86_64 1.1.4-2.fc38 fedora 77 k libXrender x86_64 0.9.11-2.fc38 fedora 27 k libXt x86_64 1.2.1-4.fc38 fedora 179 k libXt-devel x86_64 1.2.1-4.fc38 fedora 460 k libXxf86vm x86_64 1.1.5-2.fc38 fedora 18 k libb2 x86_64 0.98.1-8.fc38 fedora 25 k libdrm x86_64 2.4.114-2.fc38 fedora 157 k libdrm-devel x86_64 2.4.114-2.fc38 fedora 174 k libfontenc x86_64 1.1.6-2.fc38 fedora 32 k libgfortran x86_64 13.1.1-4.fc39 fedora 896 k libglvnd x86_64 1:1.6.0-2.fc38 fedora 134 k libglvnd-core-devel x86_64 1:1.6.0-2.fc38 fedora 18 k libglvnd-egl x86_64 1:1.6.0-2.fc38 fedora 36 k libglvnd-gles x86_64 1:1.6.0-2.fc38 fedora 32 k libglvnd-glx x86_64 1:1.6.0-2.fc38 fedora 142 k libglvnd-opengl x86_64 1:1.6.0-2.fc38 fedora 43 k libicu x86_64 73.2-1.fc39 fedora 11 M libicu-devel x86_64 73.2-1.fc39 fedora 924 k libimagequant x86_64 4.0.1-4.fc39 fedora 302 k libjpeg-turbo x86_64 2.1.4-2.fc38 fedora 183 k libmpc x86_64 1.3.1-2.fc38 fedora 70 k libpciaccess x86_64 0.16-8.fc38 fedora 26 k libpciaccess-devel x86_64 0.16-8.fc38 fedora 12 k libpng x86_64 2:1.6.37-14.fc38 fedora 120 k libqhull_r x86_64 1:7.2.1-12.fc38 fedora 167 k libquadmath x86_64 13.1.1-4.fc39 fedora 192 k libquadmath-devel x86_64 13.1.1-4.fc39 fedora 34 k libraqm x86_64 0.8.0-4.fc38 fedora 20 k libstdc++-devel x86_64 13.1.1-4.fc39 fedora 2.6 M libtiff x86_64 4.4.0-5.fc38 fedora 197 k libtool-ltdl x86_64 2.4.7-6.fc38 fedora 37 k libunwind x86_64 1.7.0-0.1.rc2.fc39 fedora 70 k libuv x86_64 1:1.46.0-1.fc39 fedora 159 k libwayland-client x86_64 1.22.0-1.fc39 fedora 33 k libwayland-server x86_64 1.22.0-1.fc39 fedora 42 k libwebp x86_64 1.3.1-1.fc39 fedora 283 k libxcb x86_64 1.13.1-11.fc38 fedora 231 k libxcb-devel x86_64 1.13.1-11.fc38 fedora 1.4 M libxcrypt-devel x86_64 4.4.36-1.fc39 fedora 30 k libxkbfile x86_64 1.1.1-2.fc38 fedora 90 k libxshmfence x86_64 1.3-12.fc38 fedora 12 k libxslt x86_64 1.1.38-2.fc39 fedora 186 k mesa-libEGL x86_64 23.1.3-1.fc39 fedora 132 k mesa-libGL x86_64 23.1.3-1.fc39 fedora 174 k mesa-libGL-devel x86_64 23.1.3-1.fc39 fedora 36 k mesa-libGLU x86_64 9.0.1-8.fc38 fedora 155 k mesa-libGLU-devel x86_64 9.0.1-8.fc38 fedora 13 k mesa-libgbm x86_64 23.1.3-1.fc39 fedora 45 k mesa-libglapi x86_64 23.1.3-1.fc39 fedora 54 k mpdecimal x86_64 2.5.1-6.fc38 fedora 89 k ncurses x86_64 6.4-5.20230520.fc39 fedora 416 k nettle x86_64 3.9.1-1.fc39 fedora 425 k openblas x86_64 0.3.21-4.fc38 fedora 35 k openblas-openmp x86_64 0.3.21-4.fc38 fedora 5.1 M openjpeg2 x86_64 2.5.0-3.fc38 fedora 178 k perl-Carp noarch 1.54-499.fc39 fedora 29 k perl-Class-Struct noarch 0.68-499.fc39 fedora 22 k perl-DynaLoader x86_64 1.54-499.fc39 fedora 26 k perl-Encode x86_64 4:3.19-499.fc39 fedora 1.7 M perl-Errno x86_64 1.37-499.fc39 fedora 15 k perl-Exporter noarch 5.77-499.fc39 fedora 30 k perl-Fcntl x86_64 1.15-499.fc39 fedora 20 k perl-File-Basename noarch 2.86-499.fc39 fedora 17 k perl-File-Path noarch 2.18-499.fc39 fedora 35 k perl-File-Temp noarch 1:0.231.100-499.fc39 fedora 59 k perl-File-stat noarch 1.13-499.fc39 fedora 17 k perl-Getopt-Long noarch 1:2.54-499.fc39 fedora 60 k perl-Getopt-Std noarch 1.13-499.fc39 fedora 16 k perl-HTTP-Tiny noarch 0.088-1.fc39 fedora 55 k perl-IO x86_64 1.52-499.fc39 fedora 82 k perl-IPC-Open3 noarch 1.22-499.fc39 fedora 22 k perl-MIME-Base64 x86_64 3.16-499.fc39 fedora 30 k perl-POSIX x86_64 2.13-499.fc39 fedora 97 k perl-PathTools x86_64 3.89-499.fc39 fedora 87 k perl-Pod-Escapes noarch 1:1.07-499.fc39 fedora 19 k perl-Pod-Perldoc noarch 3.28.01-500.fc39 fedora 86 k perl-Pod-Simple noarch 1:3.45-3.fc39 fedora 218 k perl-Pod-Usage noarch 4:2.03-499.fc39 fedora 40 k perl-Scalar-List-Utils x86_64 5:1.63-499.fc39 fedora 72 k perl-SelectSaver noarch 1.02-499.fc39 fedora 12 k perl-Socket x86_64 4:2.037-2.fc39 fedora 55 k perl-Storable x86_64 1:3.32-499.fc39 fedora 99 k perl-Symbol noarch 1.09-499.fc39 fedora 14 k perl-Term-ANSIColor noarch 5.01-500.fc39 fedora 47 k perl-Term-Cap noarch 1.18-499.fc39 fedora 22 k perl-Text-ParseWords noarch 3.31-499.fc39 fedora 16 k perl-Text-Tabs+Wrap noarch 2023.0511-2.fc39 fedora 22 k perl-Time-Local noarch 2:1.350-2.fc39 fedora 34 k perl-constant noarch 1.33-500.fc39 fedora 23 k perl-if noarch 0.61.000-499.fc39 fedora 14 k perl-interpreter x86_64 4:5.38.0-499.fc39 fedora 72 k perl-libs x86_64 4:5.38.0-499.fc39 fedora 2.3 M perl-locale noarch 1.10-499.fc39 fedora 14 k perl-mro x86_64 1.28-499.fc39 fedora 29 k perl-overload noarch 1.37-499.fc39 fedora 45 k perl-overloading noarch 0.02-499.fc39 fedora 13 k perl-parent noarch 1:0.241-499.fc39 fedora 15 k perl-podlators noarch 1:5.01-499.fc39 fedora 125 k perl-vars noarch 1.05-499.fc39 fedora 13 k pixman x86_64 0.42.2-1.fc39 fedora 284 k pyproject-rpm-macros noarch 1.9.0-1.fc39 fedora 42 k python-pip-wheel noarch 23.1.2-4.fc39 copr_base 1.4 M python-rpm-macros noarch 3.12-1.fc39 fedora 19 k python3 x86_64 3.12.0~b4-1.fc39 fedora 26 k python3-appdirs noarch 1.4.4-11.fc39 copr_base 23 k python3-brotli x86_64 1.0.9-13.fc39 copr_base 320 k python3-cairo x86_64 1.24.0-1.fc39 fedora 125 k python3-contourpy x86_64 1.1.0-1.fc39 fedora 237 k python3-cycler noarch 0.11.0-8.fc39 fedora 21 k python3-dateutil noarch 1:2.8.2-9.fc39 fedora 355 k python3-fonttools x86_64 4.41.0-1.fc39 fedora 2.8 M python3-fs noarch 2.4.16-3.fc39 fedora 302 k python3-kiwisolver x86_64 1.4.4-8.fc39 fedora 66 k python3-libs x86_64 3.12.0~b4-1.fc39 fedora 9.2 M python3-lxml x86_64 4.9.2-8.fc39 fedora 1.4 M python3-matplotlib-data noarch 3.7.2-1.fc39 fedora 542 k python3-matplotlib-data-fonts noarch 3.7.2-1.fc39 fedora 2.3 M python3-matplotlib-tk x86_64 3.7.2-1.fc39 fedora 52 k python3-munkres noarch 1.1.2-16.fc39 copr_base 26 k python3-numpy x86_64 1:1.24.4-1.fc39 fedora 7.7 M python3-numpy-f2py x86_64 1:1.24.4-1.fc39 fedora 478 k python3-olefile noarch 0.46-21.fc39 copr_base 66 k python3-packaging noarch 23.1-3.fc39 fedora 114 k python3-pillow x86_64 10.0.0-1.fc39 fedora 913 k python3-pillow-tk x86_64 10.0.0-1.fc39 fedora 29 k python3-pyparsing noarch 3.0.9-10.fc39 fedora 254 k python3-rpm-generators noarch 14-6.fc39 fedora 30 k python3-rpm-macros noarch 3.12-1.fc39 fedora 15 k python3-scipy x86_64 1.10.1-5.fc39 fedora 21 M python3-six noarch 1.16.0-11.fc39 fedora 41 k python3-tkinter x86_64 3.12.0~b4-1.fc39 fedora 406 k rhash x86_64 1.4.3-2.fc38 fedora 194 k tcl x86_64 1:8.6.12-4.fc39 fedora 1.1 M tk x86_64 1:8.6.12-4.fc38 fedora 1.6 M vim-filesystem noarch 2:9.0.1677-2.fc39 fedora 18 k xkbcomp x86_64 1.4.6-5.fc38 fedora 101 k xkeyboard-config noarch 2.39-1.fc39 fedora 962 k xml-common noarch 0.6.3-60.fc38 fedora 31 k xorg-x11-proto-devel noarch 2023.2-1.fc39 fedora 297 k xorg-x11-server-common x86_64 1.20.14-23.fc39 fedora 35 k xorg-x11-xauth x86_64 1:1.1.2-3.fc38 fedora 36 k Transaction Summary ================================================================================ Install 246 Packages Total download size: 211 M Installed size: 867 M Downloading Packages: (1/246): python3-appdirs-1.4.4-11.fc39.noarch.r 72 kB/s | 23 kB 00:00 (2/246): python3-brotli-1.0.9-13.fc39.x86_64.rp 475 kB/s | 320 kB 00:00 (3/246): python3-munkres-1.1.2-16.fc39.noarch.r 48 kB/s | 26 kB 00:00 (4/246): python-pip-wheel-23.1.2-4.fc39.noarch. 1.6 MB/s | 1.4 MB 00:00 (5/246): python3-olefile-0.46-21.fc39.noarch.rp 307 kB/s | 66 kB 00:00 (6/246): annobin-docs-12.21-1.fc39.noarch.rpm 132 kB/s | 95 kB 00:00 (7/246): boost-1.81.0-5.fc39.x86_64.rpm 100 kB/s | 14 kB 00:00 (8/246): abattis-cantarell-vf-fonts-0.301-9.fc3 131 kB/s | 121 kB 00:00 (9/246): boost-atomic-1.81.0-5.fc39.x86_64.rpm 128 kB/s | 20 kB 00:00 (10/246): boost-chrono-1.81.0-5.fc39.x86_64.rpm 150 kB/s | 26 kB 00:00 (11/246): boost-container-1.81.0-5.fc39.x86_64. 205 kB/s | 40 kB 00:00 (12/246): boost-context-1.81.0-5.fc39.x86_64.rp 40 kB/s | 17 kB 00:00 (13/246): boost-contract-1.81.0-5.fc39.x86_64.r 160 kB/s | 46 kB 00:00 (14/246): annobin-plugin-gcc-12.21-1.fc39.x86_6 637 kB/s | 959 kB 00:01 (15/246): boost-coroutine-1.81.0-5.fc39.x86_64. 153 kB/s | 20 kB 00:00 (16/246): boost-date-time-1.81.0-5.fc39.x86_64. 123 kB/s | 16 kB 00:00 (17/246): boost-fiber-1.81.0-5.fc39.x86_64.rpm 238 kB/s | 42 kB 00:00 (18/246): boost-filesystem-1.81.0-5.fc39.x86_64 217 kB/s | 68 kB 00:00 (19/246): boost-graph-1.81.0-5.fc39.x86_64.rpm 632 kB/s | 153 kB 00:00 (20/246): boost-json-1.81.0-5.fc39.x86_64.rpm 328 kB/s | 110 kB 00:00 (21/246): boost-iostreams-1.81.0-5.fc39.x86_64. 91 kB/s | 42 kB 00:00 (22/246): boost-locale-1.81.0-5.fc39.x86_64.rpm 352 kB/s | 222 kB 00:00 (23/246): boost-math-1.81.0-5.fc39.x86_64.rpm 1.2 MB/s | 219 kB 00:00 (24/246): boost-devel-1.81.0-5.fc39.x86_64.rpm 8.2 MB/s | 14 MB 00:01 (25/246): boost-numpy3-1.81.0-5.fc39.x86_64.rpm 231 kB/s | 30 kB 00:00 (26/246): boost-nowide-1.81.0-5.fc39.x86_64.rpm 142 kB/s | 21 kB 00:00 (27/246): boost-program-options-1.81.0-5.fc39.x 386 kB/s | 110 kB 00:00 (28/246): boost-random-1.81.0-5.fc39.x86_64.rpm 124 kB/s | 24 kB 00:00 (29/246): boost-python3-1.81.0-5.fc39.x86_64.rp 200 kB/s | 97 kB 00:00 (30/246): boost-regex-1.81.0-5.fc39.x86_64.rpm 475 kB/s | 112 kB 00:00 (31/246): boost-log-1.81.0-5.fc39.x86_64.rpm 282 kB/s | 493 kB 00:01 (32/246): boost-stacktrace-1.81.0-5.fc39.x86_64 179 kB/s | 30 kB 00:00 (33/246): boost-serialization-1.81.0-5.fc39.x86 327 kB/s | 135 kB 00:00 (34/246): boost-system-1.81.0-5.fc39.x86_64.rpm 101 kB/s | 16 kB 00:00 (35/246): boost-test-1.81.0-5.fc39.x86_64.rpm 1.5 MB/s | 241 kB 00:00 (36/246): boost-thread-1.81.0-5.fc39.x86_64.rpm 389 kB/s | 59 kB 00:00 (37/246): boost-timer-1.81.0-5.fc39.x86_64.rpm 130 kB/s | 24 kB 00:00 (38/246): boost-type_erasure-1.81.0-5.fc39.x86_ 189 kB/s | 34 kB 00:00 (39/246): boost-wave-1.81.0-5.fc39.x86_64.rpm 709 kB/s | 225 kB 00:00 (40/246): cmake-3.27.0-1.fc39.x86_64.rpm 16 MB/s | 8.0 MB 00:00 (41/246): cmake-filesystem-3.27.0-1.fc39.x86_64 155 kB/s | 18 kB 00:00 (42/246): cmake-data-3.27.0-1.fc39.noarch.rpm 4.3 MB/s | 2.2 MB 00:00 (43/246): cmake-rpm-macros-3.27.0-1.fc39.noarch 110 kB/s | 17 kB 00:00 (44/246): default-fonts-core-sans-4.0-1.fc39.no 238 kB/s | 31 kB 00:00 (45/246): dejavu-sans-fonts-2.37-20.fc38.noarch 8.0 MB/s | 1.3 MB 00:00 (46/246): emacs-filesystem-28.2-6.fc39.noarch.r 65 kB/s | 7.8 kB 00:00 (47/246): expat-2.5.0-2.fc38.x86_64.rpm 836 kB/s | 110 kB 00:00 (48/246): cairo-1.17.8-4.fc39.x86_64.rpm 500 kB/s | 706 kB 00:01 (49/246): cpp-13.1.1-4.fc39.x86_64.rpm 14 MB/s | 11 MB 00:00 (50/246): flexiblas-3.3.1-3.fc39.x86_64.rpm 203 kB/s | 33 kB 00:00 (51/246): flexiblas-openblas-openmp-3.3.1-3.fc3 122 kB/s | 17 kB 00:00 (52/246): fontconfig-2.14.2-3.fc39.x86_64.rpm 2.1 MB/s | 296 kB 00:00 (53/246): fonts-filesystem-2.0.5-11.fc38.noarch 47 kB/s | 8.1 kB 00:00 (54/246): freeglut-3.4.0-3.fc39.x86_64.rpm 1.0 MB/s | 155 kB 00:00 (55/246): freetype-2.13.1-1.fc39.x86_64.rpm 3.3 MB/s | 414 kB 00:00 (56/246): freeglut-devel-3.4.0-3.fc39.x86_64.rp 5.0 MB/s | 949 kB 00:00 (57/246): fribidi-1.0.13-1.fc39.x86_64.rpm 735 kB/s | 90 kB 00:00 (58/246): gc-8.2.2-3.fc38.x86_64.rpm 956 kB/s | 110 kB 00:00 (59/246): gcc-c++-13.1.1-4.fc39.x86_64.rpm 15 MB/s | 13 MB 00:00 (60/246): gcc-plugin-annobin-13.1.1-4.fc39.x86_ 292 kB/s | 45 kB 00:00 (61/246): gl-manpages-1.1-28.20190306.fc39.noar 6.8 MB/s | 1.2 MB 00:00 (62/246): glib2-2.77.0-7.fc39.x86_64.rpm 8.0 MB/s | 2.8 MB 00:00 (63/246): glibc-devel-2.37.9000-17.fc39.x86_64. 693 kB/s | 80 kB 00:00 (64/246): glibc-headers-x86-2.37.9000-17.fc39.n 3.9 MB/s | 563 kB 00:00 (65/246): gnutls-3.8.0-6.fc39.x86_64.rpm 6.0 MB/s | 1.1 MB 00:00 (66/246): google-noto-fonts-common-20230601-3.f 121 kB/s | 16 kB 00:00 (67/246): gcc-13.1.1-4.fc39.x86_64.rpm 15 MB/s | 34 MB 00:02 (68/246): google-noto-sans-vf-fonts-20230601-3. 5.8 MB/s | 582 kB 00:00 (69/246): graphite2-1.3.14-11.fc38.x86_64.rpm 688 kB/s | 95 kB 00:00 (70/246): groff-base-1.23.0-1.fc39.x86_64.rpm 3.3 MB/s | 1.1 MB 00:00 (71/246): flexiblas-netlib-3.3.1-3.fc39.x86_64. 834 kB/s | 3.1 MB 00:03 (72/246): guile22-2.2.7-8.fc39.x86_64.rpm 7.1 MB/s | 6.5 MB 00:00 (73/246): jbigkit-libs-2.1-25.fc38.x86_64.rpm 356 kB/s | 53 kB 00:00 (74/246): jsoncpp-1.9.5-4.fc38.x86_64.rpm 668 kB/s | 97 kB 00:00 (75/246): kernel-headers-6.5.0-0.rc2.git0.1.fc3 9.4 MB/s | 1.5 MB 00:00 (76/246): lcms2-2.15-1.fc39.x86_64.rpm 1.3 MB/s | 177 kB 00:00 (77/246): harfbuzz-8.0.1-2.fc39.x86_64.rpm 611 kB/s | 937 kB 00:01 (78/246): libICE-1.0.10-10.fc38.x86_64.rpm 210 kB/s | 71 kB 00:00 (79/246): libICE-devel-1.0.10-10.fc38.x86_64.rp 262 kB/s | 46 kB 00:00 (80/246): libSM-1.2.3-12.fc38.x86_64.rpm 312 kB/s | 41 kB 00:00 (81/246): libSM-devel-1.2.3-12.fc38.x86_64.rpm 86 kB/s | 12 kB 00:00 (82/246): libX11-1.8.6-1.fc39.x86_64.rpm 5.3 MB/s | 649 kB 00:00 (83/246): libX11-devel-1.8.6-1.fc39.x86_64.rpm 6.6 MB/s | 1.0 MB 00:00 (84/246): hwdata-0.372-1.fc39.noarch.rpm 1.0 MB/s | 1.6 MB 00:01 (85/246): libX11-xcb-1.8.6-1.fc39.x86_64.rpm 103 kB/s | 11 kB 00:00 (86/246): libX11-common-1.8.6-1.fc39.noarch.rpm 561 kB/s | 175 kB 00:00 (87/246): libXau-1.0.11-2.fc38.x86_64.rpm 235 kB/s | 32 kB 00:00 (88/246): libXau-devel-1.0.11-2.fc38.x86_64.rpm 110 kB/s | 14 kB 00:00 (89/246): libXdmcp-1.1.3-10.fc38.x86_64.rpm 193 kB/s | 35 kB 00:00 (90/246): libXext-1.3.5-2.fc38.x86_64.rpm 281 kB/s | 39 kB 00:00 (91/246): libXext-devel-1.3.5-2.fc38.x86_64.rpm 637 kB/s | 85 kB 00:00 (92/246): libXfixes-6.0.0-5.fc38.x86_64.rpm 150 kB/s | 19 kB 00:00 (93/246): libXfixes-devel-6.0.0-5.fc38.x86_64.r 96 kB/s | 12 kB 00:00 (94/246): libXfont2-2.0.3-14.fc38.x86_64.rpm 1.1 MB/s | 144 kB 00:00 (95/246): libXi-1.8.1-1.fc39.x86_64.rpm 251 kB/s | 40 kB 00:00 (96/246): libXft-2.3.8-2.fc39.x86_64.rpm 336 kB/s | 72 kB 00:00 (97/246): libXi-devel-1.8.1-1.fc39.x86_64.rpm 798 kB/s | 116 kB 00:00 (98/246): libXmu-1.1.4-2.fc38.x86_64.rpm 444 kB/s | 77 kB 00:00 (99/246): libXrender-0.9.11-2.fc38.x86_64.rpm 212 kB/s | 27 kB 00:00 (100/246): libXmu-devel-1.1.4-2.fc38.x86_64.rpm 163 kB/s | 27 kB 00:00 (101/246): libXt-devel-1.2.1-4.fc38.x86_64.rpm 2.8 MB/s | 460 kB 00:00 (102/246): libXxf86vm-1.1.5-2.fc38.x86_64.rpm 112 kB/s | 18 kB 00:00 (103/246): libXt-1.2.1-4.fc38.x86_64.rpm 714 kB/s | 179 kB 00:00 (104/246): libb2-0.98.1-8.fc38.x86_64.rpm 172 kB/s | 25 kB 00:00 (105/246): libfontenc-1.1.6-2.fc38.x86_64.rpm 235 kB/s | 32 kB 00:00 (106/246): libdrm-devel-2.4.114-2.fc38.x86_64.r 750 kB/s | 174 kB 00:00 (107/246): libdrm-2.4.114-2.fc38.x86_64.rpm 501 kB/s | 157 kB 00:00 (108/246): libgfortran-13.1.1-4.fc39.x86_64.rpm 4.4 MB/s | 896 kB 00:00 (109/246): libglvnd-core-devel-1.6.0-2.fc38.x86 111 kB/s | 18 kB 00:00 (110/246): libglvnd-1.6.0-2.fc38.x86_64.rpm 545 kB/s | 134 kB 00:00 (111/246): libglvnd-devel-1.6.0-2.fc38.x86_64.r 1.0 MB/s | 163 kB 00:00 (112/246): libglvnd-egl-1.6.0-2.fc38.x86_64.rpm 191 kB/s | 36 kB 00:00 (113/246): libglvnd-gles-1.6.0-2.fc38.x86_64.rp 202 kB/s | 32 kB 00:00 (114/246): libglvnd-glx-1.6.0-2.fc38.x86_64.rpm 569 kB/s | 142 kB 00:00 (115/246): libglvnd-opengl-1.6.0-2.fc38.x86_64. 155 kB/s | 43 kB 00:00 (116/246): libimagequant-4.0.1-4.fc39.x86_64.rp 625 kB/s | 302 kB 00:00 (117/246): libjpeg-turbo-2.1.4-2.fc38.x86_64.rp 653 kB/s | 183 kB 00:00 (118/246): libmpc-1.3.1-2.fc38.x86_64.rpm 357 kB/s | 70 kB 00:00 (119/246): libpciaccess-0.16-8.fc38.x86_64.rpm 168 kB/s | 26 kB 00:00 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xkeyboard-config-2.39-1.fc39.noarch. 496 kB/s | 962 kB 00:01 -------------------------------------------------------------------------------- Total 6.7 MB/s | 211 MB 00:31 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. 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libquadmath-devel-13.1.1-4.fc39.x86_64 126/246 Verifying : libraqm-0.8.0-4.fc38.x86_64 127/246 Verifying : libstdc++-devel-13.1.1-4.fc39.x86_64 128/246 Verifying : libtiff-4.4.0-5.fc38.x86_64 129/246 Verifying : libtiff-devel-4.4.0-5.fc38.x86_64 130/246 Verifying : libtool-ltdl-2.4.7-6.fc38.x86_64 131/246 Verifying : libunwind-1.7.0-0.1.rc2.fc39.x86_64 132/246 Verifying : libuv-1:1.46.0-1.fc39.x86_64 133/246 Verifying : libwayland-client-1.22.0-1.fc39.x86_64 134/246 Verifying : libwayland-server-1.22.0-1.fc39.x86_64 135/246 Verifying : libwebp-1.3.1-1.fc39.x86_64 136/246 Verifying : libxcb-1.13.1-11.fc38.x86_64 137/246 Verifying : libxcb-devel-1.13.1-11.fc38.x86_64 138/246 Verifying : libxcrypt-devel-4.4.36-1.fc39.x86_64 139/246 Verifying : libxkbfile-1.1.1-2.fc38.x86_64 140/246 Verifying : libxshmfence-1.3-12.fc38.x86_64 141/246 Verifying : libxslt-1.1.38-2.fc39.x86_64 142/246 Verifying : make-1:4.4.1-1.fc39.x86_64 143/246 Verifying : mesa-libEGL-23.1.3-1.fc39.x86_64 144/246 Verifying : mesa-libGL-23.1.3-1.fc39.x86_64 145/246 Verifying : mesa-libGL-devel-23.1.3-1.fc39.x86_64 146/246 Verifying : mesa-libGLU-9.0.1-8.fc38.x86_64 147/246 Verifying : mesa-libGLU-devel-9.0.1-8.fc38.x86_64 148/246 Verifying : mesa-libgbm-23.1.3-1.fc39.x86_64 149/246 Verifying : mesa-libglapi-23.1.3-1.fc39.x86_64 150/246 Verifying : mpdecimal-2.5.1-6.fc38.x86_64 151/246 Verifying : ncurses-6.4-5.20230520.fc39.x86_64 152/246 Verifying : nettle-3.9.1-1.fc39.x86_64 153/246 Verifying : openblas-0.3.21-4.fc38.x86_64 154/246 Verifying : openblas-openmp-0.3.21-4.fc38.x86_64 155/246 Verifying : openjpeg2-2.5.0-3.fc38.x86_64 156/246 Verifying : perl-Carp-1.54-499.fc39.noarch 157/246 Verifying : perl-Class-Struct-0.68-499.fc39.noarch 158/246 Verifying : perl-DynaLoader-1.54-499.fc39.x86_64 159/246 Verifying : perl-Encode-4:3.19-499.fc39.x86_64 160/246 Verifying : perl-Errno-1.37-499.fc39.x86_64 161/246 Verifying : perl-Exporter-5.77-499.fc39.noarch 162/246 Verifying : perl-Fcntl-1.15-499.fc39.x86_64 163/246 Verifying : perl-File-Basename-2.86-499.fc39.noarch 164/246 Verifying : perl-File-Path-2.18-499.fc39.noarch 165/246 Verifying : perl-File-Temp-1:0.231.100-499.fc39.noarch 166/246 Verifying : perl-File-stat-1.13-499.fc39.noarch 167/246 Verifying : perl-Getopt-Long-1:2.54-499.fc39.noarch 168/246 Verifying : perl-Getopt-Std-1.13-499.fc39.noarch 169/246 Verifying : perl-HTTP-Tiny-0.088-1.fc39.noarch 170/246 Verifying : perl-IO-1.52-499.fc39.x86_64 171/246 Verifying : perl-IPC-Open3-1.22-499.fc39.noarch 172/246 Verifying : perl-MIME-Base64-3.16-499.fc39.x86_64 173/246 Verifying : perl-POSIX-2.13-499.fc39.x86_64 174/246 Verifying : perl-PathTools-3.89-499.fc39.x86_64 175/246 Verifying : perl-Pod-Escapes-1:1.07-499.fc39.noarch 176/246 Verifying : perl-Pod-Perldoc-3.28.01-500.fc39.noarch 177/246 Verifying : perl-Pod-Simple-1:3.45-3.fc39.noarch 178/246 Verifying : perl-Pod-Usage-4:2.03-499.fc39.noarch 179/246 Verifying : perl-Scalar-List-Utils-5:1.63-499.fc39.x86_64 180/246 Verifying : perl-SelectSaver-1.02-499.fc39.noarch 181/246 Verifying : perl-Socket-4:2.037-2.fc39.x86_64 182/246 Verifying : perl-Storable-1:3.32-499.fc39.x86_64 183/246 Verifying : perl-Symbol-1.09-499.fc39.noarch 184/246 Verifying : perl-Term-ANSIColor-5.01-500.fc39.noarch 185/246 Verifying : perl-Term-Cap-1.18-499.fc39.noarch 186/246 Verifying : perl-Text-ParseWords-3.31-499.fc39.noarch 187/246 Verifying : perl-Text-Tabs+Wrap-2023.0511-2.fc39.noarch 188/246 Verifying : perl-Time-Local-2:1.350-2.fc39.noarch 189/246 Verifying : perl-constant-1.33-500.fc39.noarch 190/246 Verifying : perl-if-0.61.000-499.fc39.noarch 191/246 Verifying : perl-interpreter-4:5.38.0-499.fc39.x86_64 192/246 Verifying : perl-libs-4:5.38.0-499.fc39.x86_64 193/246 Verifying : perl-locale-1.10-499.fc39.noarch 194/246 Verifying : perl-macros-4:5.38.0-499.fc39.noarch 195/246 Verifying : perl-mro-1.28-499.fc39.x86_64 196/246 Verifying : perl-overload-1.37-499.fc39.noarch 197/246 Verifying : perl-overloading-0.02-499.fc39.noarch 198/246 Verifying : perl-parent-1:0.241-499.fc39.noarch 199/246 Verifying : perl-podlators-1:5.01-499.fc39.noarch 200/246 Verifying : perl-vars-1.05-499.fc39.noarch 201/246 Verifying : pixman-0.42.2-1.fc39.x86_64 202/246 Verifying : pybind11-devel-2.10.4-2.fc39.x86_64 203/246 Verifying : pyproject-rpm-macros-1.9.0-1.fc39.noarch 204/246 Verifying : python-rpm-macros-3.12-1.fc39.noarch 205/246 Verifying : python3-3.12.0~b4-1.fc39.x86_64 206/246 Verifying : python3-cairo-1.24.0-1.fc39.x86_64 207/246 Verifying : python3-contourpy-1.1.0-1.fc39.x86_64 208/246 Verifying : python3-cycler-0.11.0-8.fc39.noarch 209/246 Verifying : python3-dateutil-1:2.8.2-9.fc39.noarch 210/246 Verifying : python3-devel-3.12.0~b4-1.fc39.x86_64 211/246 Verifying : python3-flaky-3.7.0-11.fc39.noarch 212/246 Verifying : python3-fonttools-4.41.0-1.fc39.x86_64 213/246 Verifying : python3-fs-2.4.16-3.fc39.noarch 214/246 Verifying : python3-kiwisolver-1.4.4-8.fc39.x86_64 215/246 Verifying : python3-libs-3.12.0~b4-1.fc39.x86_64 216/246 Verifying : python3-lxml-4.9.2-8.fc39.x86_64 217/246 Verifying : python3-matplotlib-3.7.2-1.fc39.x86_64 218/246 Verifying : python3-matplotlib-data-3.7.2-1.fc39.noarch 219/246 Verifying : python3-matplotlib-data-fonts-3.7.2-1.fc39.noarc 220/246 Verifying : python3-matplotlib-tk-3.7.2-1.fc39.x86_64 221/246 Verifying : python3-numpy-1:1.24.4-1.fc39.x86_64 222/246 Verifying : python3-numpy-f2py-1:1.24.4-1.fc39.x86_64 223/246 Verifying : python3-packaging-23.1-3.fc39.noarch 224/246 Verifying : python3-pillow-10.0.0-1.fc39.x86_64 225/246 Verifying : python3-pillow-tk-10.0.0-1.fc39.x86_64 226/246 Verifying : python3-pyparsing-3.0.9-10.fc39.noarch 227/246 Verifying : python3-rpm-generators-14-6.fc39.noarch 228/246 Verifying : python3-rpm-macros-3.12-1.fc39.noarch 229/246 Verifying : python3-scipy-1.10.1-5.fc39.x86_64 230/246 Verifying : python3-setuptools-67.7.2-5.fc39.noarch 231/246 Verifying : python3-six-1.16.0-11.fc39.noarch 232/246 Verifying : python3-tkinter-3.12.0~b4-1.fc39.x86_64 233/246 Verifying : python3-wheel-1:0.40.0-3.fc39.noarch 234/246 Verifying : rhash-1.4.3-2.fc38.x86_64 235/246 Verifying : tcl-1:8.6.12-4.fc39.x86_64 236/246 Verifying : tk-1:8.6.12-4.fc38.x86_64 237/246 Verifying : vim-filesystem-2:9.0.1677-2.fc39.noarch 238/246 Verifying : xkbcomp-1.4.6-5.fc38.x86_64 239/246 Verifying : xkeyboard-config-2.39-1.fc39.noarch 240/246 Verifying : xml-common-0.6.3-60.fc38.noarch 241/246 Verifying : xorg-x11-proto-devel-2023.2-1.fc39.noarch 242/246 Verifying : xorg-x11-server-Xvfb-1.20.14-23.fc39.x86_64 243/246 Verifying : xorg-x11-server-common-1.20.14-23.fc39.x86_64 244/246 Verifying : xorg-x11-xauth-1:1.1.2-3.fc38.x86_64 245/246 Verifying : zlib-devel-1.2.13-3.fc38.x86_64 246/246 Installed: abattis-cantarell-vf-fonts-0.301-9.fc38.noarch annobin-docs-12.21-1.fc39.noarch annobin-plugin-gcc-12.21-1.fc39.x86_64 boost-1.81.0-5.fc39.x86_64 boost-atomic-1.81.0-5.fc39.x86_64 boost-chrono-1.81.0-5.fc39.x86_64 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libtiff-devel-4.4.0-5.fc38.x86_64 libtool-ltdl-2.4.7-6.fc38.x86_64 libunwind-1.7.0-0.1.rc2.fc39.x86_64 libuv-1:1.46.0-1.fc39.x86_64 libwayland-client-1.22.0-1.fc39.x86_64 libwayland-server-1.22.0-1.fc39.x86_64 libwebp-1.3.1-1.fc39.x86_64 libxcb-1.13.1-11.fc38.x86_64 libxcb-devel-1.13.1-11.fc38.x86_64 libxcrypt-devel-4.4.36-1.fc39.x86_64 libxkbfile-1.1.1-2.fc38.x86_64 libxshmfence-1.3-12.fc38.x86_64 libxslt-1.1.38-2.fc39.x86_64 make-1:4.4.1-1.fc39.x86_64 mesa-libEGL-23.1.3-1.fc39.x86_64 mesa-libGL-23.1.3-1.fc39.x86_64 mesa-libGL-devel-23.1.3-1.fc39.x86_64 mesa-libGLU-9.0.1-8.fc38.x86_64 mesa-libGLU-devel-9.0.1-8.fc38.x86_64 mesa-libgbm-23.1.3-1.fc39.x86_64 mesa-libglapi-23.1.3-1.fc39.x86_64 mpdecimal-2.5.1-6.fc38.x86_64 ncurses-6.4-5.20230520.fc39.x86_64 nettle-3.9.1-1.fc39.x86_64 openblas-0.3.21-4.fc38.x86_64 openblas-openmp-0.3.21-4.fc38.x86_64 openjpeg2-2.5.0-3.fc38.x86_64 perl-Carp-1.54-499.fc39.noarch perl-Class-Struct-0.68-499.fc39.noarch perl-DynaLoader-1.54-499.fc39.x86_64 perl-Encode-4:3.19-499.fc39.x86_64 perl-Errno-1.37-499.fc39.x86_64 perl-Exporter-5.77-499.fc39.noarch perl-Fcntl-1.15-499.fc39.x86_64 perl-File-Basename-2.86-499.fc39.noarch perl-File-Path-2.18-499.fc39.noarch perl-File-Temp-1:0.231.100-499.fc39.noarch perl-File-stat-1.13-499.fc39.noarch perl-Getopt-Long-1:2.54-499.fc39.noarch perl-Getopt-Std-1.13-499.fc39.noarch perl-HTTP-Tiny-0.088-1.fc39.noarch perl-IO-1.52-499.fc39.x86_64 perl-IPC-Open3-1.22-499.fc39.noarch perl-MIME-Base64-3.16-499.fc39.x86_64 perl-POSIX-2.13-499.fc39.x86_64 perl-PathTools-3.89-499.fc39.x86_64 perl-Pod-Escapes-1:1.07-499.fc39.noarch perl-Pod-Perldoc-3.28.01-500.fc39.noarch perl-Pod-Simple-1:3.45-3.fc39.noarch perl-Pod-Usage-4:2.03-499.fc39.noarch perl-Scalar-List-Utils-5:1.63-499.fc39.x86_64 perl-SelectSaver-1.02-499.fc39.noarch perl-Socket-4:2.037-2.fc39.x86_64 perl-Storable-1:3.32-499.fc39.x86_64 perl-Symbol-1.09-499.fc39.noarch perl-Term-ANSIColor-5.01-500.fc39.noarch perl-Term-Cap-1.18-499.fc39.noarch perl-Text-ParseWords-3.31-499.fc39.noarch perl-Text-Tabs+Wrap-2023.0511-2.fc39.noarch perl-Time-Local-2:1.350-2.fc39.noarch perl-constant-1.33-500.fc39.noarch perl-if-0.61.000-499.fc39.noarch perl-interpreter-4:5.38.0-499.fc39.x86_64 perl-libs-4:5.38.0-499.fc39.x86_64 perl-locale-1.10-499.fc39.noarch perl-macros-4:5.38.0-499.fc39.noarch perl-mro-1.28-499.fc39.x86_64 perl-overload-1.37-499.fc39.noarch perl-overloading-0.02-499.fc39.noarch perl-parent-1:0.241-499.fc39.noarch perl-podlators-1:5.01-499.fc39.noarch perl-vars-1.05-499.fc39.noarch pixman-0.42.2-1.fc39.x86_64 pybind11-devel-2.10.4-2.fc39.x86_64 pyproject-rpm-macros-1.9.0-1.fc39.noarch python-pip-wheel-23.1.2-4.fc39.noarch python-rpm-macros-3.12-1.fc39.noarch python3-3.12.0~b4-1.fc39.x86_64 python3-appdirs-1.4.4-11.fc39.noarch python3-brotli-1.0.9-13.fc39.x86_64 python3-cairo-1.24.0-1.fc39.x86_64 python3-contourpy-1.1.0-1.fc39.x86_64 python3-cycler-0.11.0-8.fc39.noarch python3-dateutil-1:2.8.2-9.fc39.noarch python3-devel-3.12.0~b4-1.fc39.x86_64 python3-flaky-3.7.0-11.fc39.noarch python3-fonttools-4.41.0-1.fc39.x86_64 python3-fs-2.4.16-3.fc39.noarch python3-kiwisolver-1.4.4-8.fc39.x86_64 python3-libs-3.12.0~b4-1.fc39.x86_64 python3-lxml-4.9.2-8.fc39.x86_64 python3-matplotlib-3.7.2-1.fc39.x86_64 python3-matplotlib-data-3.7.2-1.fc39.noarch python3-matplotlib-data-fonts-3.7.2-1.fc39.noarch python3-matplotlib-tk-3.7.2-1.fc39.x86_64 python3-munkres-1.1.2-16.fc39.noarch python3-numpy-1:1.24.4-1.fc39.x86_64 python3-numpy-f2py-1:1.24.4-1.fc39.x86_64 python3-olefile-0.46-21.fc39.noarch python3-packaging-23.1-3.fc39.noarch python3-pillow-10.0.0-1.fc39.x86_64 python3-pillow-tk-10.0.0-1.fc39.x86_64 python3-pyparsing-3.0.9-10.fc39.noarch python3-rpm-generators-14-6.fc39.noarch python3-rpm-macros-3.12-1.fc39.noarch python3-scipy-1.10.1-5.fc39.x86_64 python3-setuptools-67.7.2-5.fc39.noarch python3-six-1.16.0-11.fc39.noarch python3-tkinter-3.12.0~b4-1.fc39.x86_64 python3-wheel-1:0.40.0-3.fc39.noarch rhash-1.4.3-2.fc38.x86_64 tcl-1:8.6.12-4.fc39.x86_64 tk-1:8.6.12-4.fc38.x86_64 vim-filesystem-2:9.0.1677-2.fc39.noarch xkbcomp-1.4.6-5.fc38.x86_64 xkeyboard-config-2.39-1.fc39.noarch xml-common-0.6.3-60.fc38.noarch xorg-x11-proto-devel-2023.2-1.fc39.noarch xorg-x11-server-Xvfb-1.20.14-23.fc39.x86_64 xorg-x11-server-common-1.20.14-23.fc39.x86_64 xorg-x11-xauth-1:1.1.2-3.fc38.x86_64 zlib-devel-1.2.13-3.fc38.x86_64 Complete! Finish: build setup for smoldyn-2.67.3-6.fc39.src.rpm Start: rpmbuild smoldyn-2.67.3-6.fc39.src.rpm warning: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689984000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.rPyO9x + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf Smoldyn-2.67.3 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Smoldyn-2.67.3.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd Smoldyn-2.67.3 + /usr/bin/mkdir -p SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #0 (smoldyn-fix_libpaths.patch): + echo 'Patch #0 (smoldyn-fix_libpaths.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .fix_libpaths --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 253 (offset 44 lines). Hunk #2 succeeded at 269 (offset 44 lines). Hunk #3 succeeded at 433 (offset 44 lines). Hunk #4 succeeded at 510 (offset 47 lines). Patch #1 (smoldyn-freeglut.patch): + echo 'Patch #1 (smoldyn-freeglut.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .freeglut --fuzz=0 patching file CMakeLists.txt Hunk #1 succeeded at 365 (offset 39 lines). Patch #2 (smoldyn-create_soname.patch): + echo 'Patch #2 (smoldyn-create_soname.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .create_soname --fuzz=0 patching file CMakeLists.txt Hunk #2 succeeded at 517 (offset 47 lines). Patch #3 (smoldyn-avoid_automatic_wheel.patch): + echo 'Patch #3 (smoldyn-avoid_automatic_wheel.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 -b --suffix .avoid_automatic_wheel --fuzz=0 patching file source/python/CMakeLists.txt Hunk #1 succeeded at 20 (offset -3 lines). Patch #4 (smoldyn-bug121.patch): + echo 'Patch #4 (smoldyn-bug121.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .bug121 --fuzz=0 patching file tests/test_api.py Patch #5 (smoldyn-bug123.patch): + echo 'Patch #5 (smoldyn-bug123.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .bug123 --fuzz=0 patching file tests/test_api.py + rm -rf source/MSVClibs + rm -rf source/pybind11 + rm -rf source/BioNetGen source/MinGWlibs Toolchain-mingw32.cmake + rm -rf source/vcell/SimpleMesh.cpp source/vcell/SimpleMesh.h source/vcell/SimpleValueProvider.cpp source/vcell/SimpleValueProvider.h source/vcell/zconf.h source/vcell/zlib.h source/vcell/zlib.lib source/NextSubVolume/Eigen + rm -rf source/NextSubVolume/boost_include + rm -f 'source/vtk/*' + find . -type f -name '*.h' -exec chmod 0644 '{}' ';' + find . -type f -name '*.c' -exec chmod 0644 '{}' ';' + find . -type f -name '*.pdf' -exec chmod 0644 '{}' ';' + find . -type f -name '*.txt' -exec chmod 0644 '{}' ';' + find . -type f -name '*.txt' -exec sed -i 's/\r$//' '{}' ';' + sed -e 's|../../../source/BioNetGen/BNG2.pl|/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl|g' -i examples/S95_regression/lrmsim.txt examples/S12_bionetgen/lrm/lrmsim.txt examples/S12_bionetgen/abba/abbasim.txt examples/S94_archive/Andrews_2016/BioNetGen/lrm/lrmsim.txt examples/S94_archive/Andrews_2016/BioNetGen/abba/abbasim.txt + cp -p source/libSteve/SFMT/LICENSE.txt source/libSteve/SFMT/SFMT-LICENSE.txt + cp -p source/libSteve/SFMT/README.txt source/libSteve/SFMT/SFMT-README.txt + find -name '*.pyc' -delete + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.6Lrpgm + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.67.3 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -Wno-dev -B build -DCPACK_BINARY_STGZ:BOOL=OFF -DCPACK_BINARY_TGZ:BOOL=OFF -DCPACK_BINARY_TZ:BOOL=OFF -DCPACK_SOURCE_TBZ2:BOOL=OFF -DCPACK_SOURCE_TGZ:BOOL=OFF -DCPACK_SOURCE_TXZ:BOOL=OFF -DCPACK_SOURCE_TZ:BOOL=OFF -DOPTION_VCELL:BOOL=OFF -DOPTION_VTK:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=ON -DSMOLDYN_VERSION:STRING=2.67.3 -DSMOLDYN_VERSION_MAJOR:STRING=2 -DOPTION_TARGET_LIBSMOLDYN:BOOL=ON -DOPTION_STATIC:BOOL=OFF -DOPTION_PYTHON:BOOL=ON -DPYBIND11_FINDPYTHON:BOOL=ON -Dpybind11_DIR:PATH=/usr/share/cmake/pybind11 -DOPTION_USE_ZLIB:BOOL=ON -DOPTION_PDE:BOOL=ON -DPERL_VENDORLIB:PATH=/usr/share/perl5/vendor_perl -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_COLOR_MAKEFILE:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=YES -DHAVE_GL_FREEGLUT_H=TRUE -DOPTION_EXAMPLES:BOOL=OFF -DOPTION_DOCS:BOOL=OFF -- The CXX compiler identification is GNU 13.1.1 -- The C compiler identification is GNU 13.1.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Smoldyn version is set to: '2.67.3' -- Compiling for Smoldyn: ON -- Compiling for Libsmoldyn: ON -- Option to compile Smoldyn for VCell: OFF -- Option to cross-compile for Windows using MinGW: OFF -- Option to include NextSubvolume: ON -- Option to include VTK: OFF -- Option to compile with static libraries: OFF -- Option to include OpenGL support: ON -- Option to include LibTiff: ON -- Option to include Zlib: ON -- Option to incude Python module: ON -- Option to run Libsmoldyn examples: OFF -- Option to build documentation: OFF -- Performing Test C_FLAG_EXISTS -- Performing Test C_FLAG_EXISTS - Success -- Performing Test CXX_FLAG_EXISTS -- Performing Test CXX_FLAG_EXISTS - Success -- [COMPILER] Adding -Wno-unused-parameter -- Build type: Release -- Compiling on a Linux computer -- CMAKE_CXX_FLAGS variable: '-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer' -- BioNetGen path: '/usr/share/perl5/vendor_perl/BioNetGen/BNG2.pl' -- Found OpenGL: /usr/lib64/libOpenGL.so -- OpenGL found: '/usr/include', '/usr/lib64/libGL.so;/usr/lib64/libGLU.so' -- Found GLUT: /usr/lib64/libglut.so -- Found TIFF: /usr/lib64/libtiff.so (found version "4.4.0") -- Found Libtiff: '/usr/include', '/usr/lib64/libtiff.so' -- Found Zlib: '/usr/include', '/usr/lib64/libz.so' -- Boost headers found: '/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include' -- Found Python3: /usr/bin/python3.12 (found version "3.12.0") found components: Interpreter Development Development.Module Development.Embed -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.10.4") -- [TEST] Found 15 test scripts -- Configuring done (1.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP LIB_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/Smoldyn-2.67.3/build + /usr/bin/make -O -j2 V=1 VERBOSE=1 -C build make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -S/builddir/build/BUILD/Smoldyn-2.67.3 -B/builddir/build/BUILD/Smoldyn-2.67.3/build --check-build-system CMakeFiles/Makefile.cmake 0 make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles /builddir/build/BUILD/Smoldyn-2.67.3/build//CMakeFiles/progress.marks make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/depend /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve/CMakeFiles/Steve.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume 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make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 4%] Building C object source/libSteve/CMakeFiles/Steve.dir/List.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o -MF CMakeFiles/nsv.dir/Species.cpp.o.d -o CMakeFiles/nsv.dir/Species.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/Species.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 6%] Building C object source/libSteve/CMakeFiles/Steve.dir/math2.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/math2.c.o -MF CMakeFiles/Steve.dir/math2.c.o.d -o CMakeFiles/Steve.dir/math2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/math2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 7%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o -MF CMakeFiles/nsv.dir/ReactionEquation.cpp.o.d -o CMakeFiles/nsv.dir/ReactionEquation.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/ReactionEquation.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 8%] Building C object source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o -MF CMakeFiles/Steve.dir/opengl2.c.o.d -o CMakeFiles/Steve.dir/opengl2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/opengl2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 11%] Building C object source/libSteve/CMakeFiles/Steve.dir/parse.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/parse.c.o -MF CMakeFiles/Steve.dir/parse.c.o.d -o CMakeFiles/Steve.dir/parse.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/parse.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 12%] Building C object source/libSteve/CMakeFiles/Steve.dir/queue.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/queue.c.o -MF CMakeFiles/Steve.dir/queue.c.o.d -o CMakeFiles/Steve.dir/queue.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/queue.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 13%] Building C object source/libSteve/CMakeFiles/Steve.dir/random2.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/random2.c.o -MF CMakeFiles/Steve.dir/random2.c.o.d -o CMakeFiles/Steve.dir/random2.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 14%] Building C object source/libSteve/CMakeFiles/Steve.dir/Rn.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/Rn.c.o -MF CMakeFiles/Steve.dir/Rn.c.o.d -o CMakeFiles/Steve.dir/Rn.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/Rn.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 16%] Building C object source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o cd 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-c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/RnSort.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 9%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -MF CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o.d -o CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 17%] Building C object source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o -MF CMakeFiles/Steve.dir/rxnparam.c.o.d -o CMakeFiles/Steve.dir/rxnparam.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/rxnparam.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 19%] Building C object source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o cd 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CMakeFiles/Steve.dir/SimCommand.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SimCommand.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 20%] Building C object source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 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-g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o -MF CMakeFiles/nsv.dir/Kairos.cpp.o.d -o CMakeFiles/nsv.dir/Kairos.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/Kairos.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 23%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ 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'/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 24%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -isystem /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/boost_include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC 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-I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o -MF CMakeFiles/Steve.dir/SurfaceParam.c.o.d -o CMakeFiles/Steve.dir/SurfaceParam.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SurfaceParam.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 28%] Building C object source/libSteve/CMakeFiles/Steve.dir/Zn.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/../Smoldyn -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra 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-fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o -MF CMakeFiles/Steve.dir/SFMT/SFMT.c.o.d -o CMakeFiles/Steve.dir/SFMT/SFMT.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SFMT/SFMT.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Built target Steve make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 25%] Building CXX object source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume && /usr/bin/g++ 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'/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Built target nsv make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/depend /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_static.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_shared.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 30%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 32%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 34%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 33%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 35%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 37%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 38%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcomparts.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 39%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcomparts.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 40%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolfilament.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 41%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolfilament.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 43%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolgraphics.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 44%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolgraphics.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 45%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolmolec.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 46%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolmolec.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 48%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolport.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 49%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolport.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 50%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smollattice.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 51%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smollattice.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 53%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolreact.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 54%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolreact.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 55%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolrule.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 56%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolrule.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 58%] Building CXX object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o /usr/bin/g++ -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 59%] Building CXX object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 60%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsurface.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 62%] Building C object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o /usr/bin/gcc -Dsmoldyn_shared_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o -MF CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o.d -o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolwall.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 61%] Building C object CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic 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-pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o -MF CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o.d -o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolwall.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 64%] Building CXX object CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o /usr/bin/g++ -Dsmoldyn_shared_EXPORTS 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CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn_static.dir/source/Smoldyn/libsmoldyn.cpp.o source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o source/libSteve/CMakeFiles/Steve.dir/List.c.o source/libSteve/CMakeFiles/Steve.dir/math2.c.o source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/bin/ranlib libsmoldyn_static.a make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 69%] Built target smoldyn_static make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_pysmoldyn.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 70%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolbng.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 71%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/random2.h:17, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:13: /usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 72%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcmd.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 74%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolcomparts.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 75%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolgraphics.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 77%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolmolec.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 79%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolport.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 80%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smollattice.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 81%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolreact.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 82%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolrule.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 83%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:15, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsim.cpp:27: /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::func_' [-Wattributes] 20 | class CallbackFunc | ^~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::target_' [-Wattributes] /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::args_' [-Wattributes] make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 67%] Linking CXX shared library libsmoldyn_shared.so /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn_shared.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libsmoldyn_shared.so.2 -o libsmoldyn_shared.so.2.67.3 CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolbng.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolboxes.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcmd.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolcomparts.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolfilament.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolgraphics.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolmolec.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolport.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smollattice.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolreact.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolrule.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsim.cpp.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolsurface.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/smolwall.c.o CMakeFiles/smoldyn_shared.dir/source/Smoldyn/libsmoldyn.cpp.o source/libSteve/CMakeFiles/Steve.dir/Geometry.c.o source/libSteve/CMakeFiles/Steve.dir/List.c.o source/libSteve/CMakeFiles/Steve.dir/math2.c.o source/libSteve/CMakeFiles/Steve.dir/opengl2.c.o source/libSteve/CMakeFiles/Steve.dir/parse.c.o source/libSteve/CMakeFiles/Steve.dir/queue.c.o source/libSteve/CMakeFiles/Steve.dir/random2.c.o source/libSteve/CMakeFiles/Steve.dir/Rn.c.o source/libSteve/CMakeFiles/Steve.dir/RnSort.c.o source/libSteve/CMakeFiles/Steve.dir/rxnparam.c.o source/libSteve/CMakeFiles/Steve.dir/SimCommand.c.o source/libSteve/CMakeFiles/Steve.dir/Sphere.c.o source/libSteve/CMakeFiles/Steve.dir/string2.c.o source/libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o source/libSteve/CMakeFiles/Steve.dir/Zn.c.o source/libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o source/NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o source/NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so /usr/bin/cmake -E cmake_symlink_library libsmoldyn_shared.so.2.67.3 libsmoldyn_shared.so.2 libsmoldyn_shared.so make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: warning: type 'struct latticestruct' violates the C++ One Definition Rule [-Wodr] 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field 'nsv' 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: type name 'NextSubvolumeMethod' should match type name 'Kairos::NextSubvolumeMethod' 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here 137 | class NextSubvolumeMethod | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^ /usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^ make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 85%] Built target smoldyn_shared make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 86%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolwall.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 85%] Building C object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/gcc -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu11 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolsurface.c make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 88%] Building CXX object CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -Wno-unused-parameter -Wall -Wextra -MD -MT CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -MF CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o.d -o CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 90%] Linking CXX executable smoldyn /usr/bin/cmake -E cmake_link_script CMakeFiles/smoldyn.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes CMakeFiles/smoldyn.dir/source/Smoldyn/smoldyn.cpp.o -o smoldyn libsmoldyn_shared.so.2.67.3 /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 90%] Built target smoldyn make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 87%] Building CXX object source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/usr/include/python3.12 -I/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -Wno-unused-parameter -Wall -Wextra -DENABLE_PYTHON_CALLBACK -DCOMPILE_AS_PY_MODULE -MD -MT source/python/CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -MF CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o.d -o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/libsmoldyn.cpp In file included from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:15, from /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/libsmoldyn.cpp:15: /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::func_' [-Wattributes] 20 | class CallbackFunc | ^~~~~~~~~~~~ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::target_' [-Wattributes] /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/../python/CallbackFunc.h:20:7: warning: 'CallbackFunc' declared with greater visibility than the type of its field 'CallbackFunc::args_' [-Wattributes] make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 91%] Linking CXX static library lib_pysmoldyn.a cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -P CMakeFiles/_pysmoldyn.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_pysmoldyn.dir/link.txt --verbose=1 /usr/bin/ar qc lib_pysmoldyn.a CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolbng.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolboxes.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcmd.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolcomparts.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolfilament.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolgraphics.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolmolec.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolport.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smollattice.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolreact.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolrule.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsim.cpp.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolsurface.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/smolwall.c.o CMakeFiles/_pysmoldyn.dir/__/Smoldyn/libsmoldyn.cpp.o ../libSteve/CMakeFiles/Steve.dir/Geometry.c.o ../libSteve/CMakeFiles/Steve.dir/List.c.o ../libSteve/CMakeFiles/Steve.dir/math2.c.o ../libSteve/CMakeFiles/Steve.dir/opengl2.c.o ../libSteve/CMakeFiles/Steve.dir/parse.c.o ../libSteve/CMakeFiles/Steve.dir/queue.c.o ../libSteve/CMakeFiles/Steve.dir/random2.c.o ../libSteve/CMakeFiles/Steve.dir/Rn.c.o ../libSteve/CMakeFiles/Steve.dir/RnSort.c.o ../libSteve/CMakeFiles/Steve.dir/rxnparam.c.o ../libSteve/CMakeFiles/Steve.dir/SimCommand.c.o ../libSteve/CMakeFiles/Steve.dir/Sphere.c.o ../libSteve/CMakeFiles/Steve.dir/string2.c.o ../libSteve/CMakeFiles/Steve.dir/SurfaceParam.c.o ../libSteve/CMakeFiles/Steve.dir/Zn.c.o ../libSteve/CMakeFiles/Steve.dir/SFMT/SFMT.c.o ../NextSubVolume/CMakeFiles/nsv.dir/StructuredGrid.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Species.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/ReactionEquation.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/NextSubvolumeMethod.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Kairos.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Io.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/Geometry.cpp.o ../NextSubVolume/CMakeFiles/nsv.dir/nsvc.cpp.o /usr/bin/ranlib lib_pysmoldyn.a make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 91%] Built target _pysmoldyn make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_smoldyn.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 92%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -MF CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o.d -o CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/CallbackFunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 93%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/Command.cpp.o -MF CMakeFiles/_smoldyn.dir/Command.cpp.o.d -o CMakeFiles/_smoldyn.dir/Command.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/Command.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 95%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/Simulation.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/Simulation.cpp.o -MF CMakeFiles/_smoldyn.dir/Simulation.cpp.o.d -o CMakeFiles/_smoldyn.dir/Simulation.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/Simulation.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 96%] Building CXX object source/python/CMakeFiles/_smoldyn.dir/module.cpp.o cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/g++ -D_smoldyn_EXPORTS -I/builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve -I/builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn -I/builddir/build/BUILD/Smoldyn-2.67.3/build -I/usr/include/GL -I/builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume -I/builddir/build/BUILD/Smoldyn-2.67.3/source/external/pybind11/include -isystem /usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -std=gnu++14 -fPIC -fvisibility=hidden -Wno-unused-parameter -Wall -Wextra -DSMOLDYN_VERSION=2.67.3 -DENABLE_PYTHON_CALLBACK -fvisibility=hidden -flto -fno-fat-lto-objects -MD -MT source/python/CMakeFiles/_smoldyn.dir/module.cpp.o -MF CMakeFiles/_smoldyn.dir/module.cpp.o.d -o CMakeFiles/_smoldyn.dir/module.cpp.o -c /builddir/build/BUILD/Smoldyn-2.67.3/source/python/module.cpp make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 97%] Linking CXX shared module /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/_smoldyn.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -DNDEBUG -flto -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so CMakeFiles/_smoldyn.dir/CallbackFunc.cpp.o CMakeFiles/_smoldyn.dir/Command.cpp.o CMakeFiles/_smoldyn.dir/Simulation.cpp.o CMakeFiles/_smoldyn.dir/module.cpp.o lib_pysmoldyn.a /usr/lib64/libGL.so /usr/lib64/libGLU.so -lglut /usr/lib64/libtiff.so /usr/lib64/libz.so cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/strip /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 97%] Built target _smoldyn make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/depend /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/depend /builddir/build/BUILD/Smoldyn-2.67.3/source/python/../Smoldyn/smoldyn.h:1044:16: warning: type 'struct simstruct' violates the C++ One Definition Rule [-Wodr] 1044 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:1044:16: note: a different type is defined in another translation unit 1044 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/python/../Smoldyn/smoldyn.h:1104:19: note: the first difference of corresponding definitions is field 'callbacks' 1104 | CallbackFunc* callbacks[MAX_PY_CALLBACK]; // Python callback. | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:1044:16: note: a type with different number of fields is defined in another translation unit 1044 | typedef struct simstruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: warning: type 'struct latticestruct' violates the C++ One Definition Rule [-Wodr] 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: a different type is defined in another translation unit 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: the first difference of corresponding definitions is field 'nsv' 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:739:26: note: a field of same name but different type is defined in another translation unit 739 | NextSubvolumeMethod* nsv; // nsv class | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smoldyn.h:714:16: note: type name 'NextSubvolumeMethod' should match type name 'Kairos::NextSubvolumeMethod' 714 | typedef struct latticestruct | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume/NextSubvolumeMethod.h:137:7: note: the incompatible type is defined here 137 | class NextSubvolumeMethod | ^ /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c: In function 'boxesupdatelists': /builddir/build/BUILD/Smoldyn-2.67.3/source/Smoldyn/smolboxes.c:783:55: warning: argument 1 range [18446744071562067968, 18446744073709551614] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 783 | bptr->neigh=(boxptr*) calloc(nneigh,sizeof(boxptr)); | ^ /usr/include/stdlib.h:675:14: note: in a call to allocation function 'calloc' declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^ make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/copy_python_tree.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/wheel.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 98%] Copying python source tree to binary directory cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Built target copy_python_tree make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Generating wheel in /builddir/build/BUILD/Smoldyn-2.67.3/build cd /builddir/build/BUILD/Smoldyn-2.67.3/build/py && /usr/bin/python3.12 setup.py bdist_wheel -d /builddir/build/BUILD/Smoldyn-2.67.3/build running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-cpython-312 creating build/lib.linux-x86_64-cpython-312/smoldyn copying smoldyn/__init__.py -> build/lib.linux-x86_64-cpython-312/smoldyn copying smoldyn/__main__.py -> build/lib.linux-x86_64-cpython-312/smoldyn copying smoldyn/smoldyn.py -> build/lib.linux-x86_64-cpython-312/smoldyn copying smoldyn/types.py -> build/lib.linux-x86_64-cpython-312/smoldyn copying smoldyn/utils.py -> build/lib.linux-x86_64-cpython-312/smoldyn creating build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/__init__.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/__main__.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/_version.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/combine.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/data_model.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/utils.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators copying smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so -> build/lib.linux-x86_64-cpython-312/smoldyn running build_ext installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-312/smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/smoldyn creating build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/data_model.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/combine.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/_version.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-312/smoldyn/types.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-312/smoldyn/smoldyn.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-312/smoldyn/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-312/smoldyn/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn running install_egg_info running egg_info creating smoldyn.egg-info writing smoldyn.egg-info/PKG-INFO writing dependency_links to smoldyn.egg-info/dependency_links.txt writing requirements to smoldyn.egg-info/requires.txt writing top-level names to smoldyn.egg-info/top_level.txt writing manifest file 'smoldyn.egg-info/SOURCES.txt' reading manifest file 'smoldyn.egg-info/SOURCES.txt' writing manifest file 'smoldyn.egg-info/SOURCES.txt' Copying smoldyn.egg-info to build/bdist.linux-x86_64/wheel/smoldyn-2.67.3-py3.12.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/smoldyn-2.67.3.dist-info/WHEEL creating '/builddir/build/BUILD/Smoldyn-2.67.3/build/smoldyn-2.67.3-cp312-cp312-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'smoldyn/__init__.py' adding 'smoldyn/__main__.py' adding 'smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so' adding 'smoldyn/smoldyn.py' adding 'smoldyn/types.py' adding 'smoldyn/utils.py' adding 'smoldyn/biosimulators/__init__.py' adding 'smoldyn/biosimulators/__main__.py' adding 'smoldyn/biosimulators/_version.py' adding 'smoldyn/biosimulators/combine.py' adding 'smoldyn/biosimulators/data_model.py' adding 'smoldyn/biosimulators/utils.py' adding 'smoldyn-2.67.3.dist-info/METADATA' adding 'smoldyn-2.67.3.dist-info/WHEEL' adding 'smoldyn-2.67.3.dist-info/top_level.txt' adding 'smoldyn-2.67.3.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer, pypa/build or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Built target wheel make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles 0 make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.BFF28j + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64 ++ dirname /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.67.3 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64 'INSTALL=/usr/bin/install -p' -C build make: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -S/builddir/build/BUILD/Smoldyn-2.67.3 -B/builddir/build/BUILD/Smoldyn-2.67.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles /builddir/build/BUILD/Smoldyn-2.67.3/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve /builddir/build/BUILD/Smoldyn-2.67.3/build/source/libSteve/CMakeFiles/Steve.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/libSteve/CMakeFiles/Steve.dir/build.make source/libSteve/CMakeFiles/Steve.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/libSteve/CMakeFiles/Steve.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 19%] Built target Steve /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume /builddir/build/BUILD/Smoldyn-2.67.3/build/source/NextSubVolume/CMakeFiles/nsv.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/NextSubVolume/CMakeFiles/nsv.dir/build.make source/NextSubVolume/CMakeFiles/nsv.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/NextSubVolume/CMakeFiles/nsv.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 29%] Built target nsv /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_static.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_static.dir/build.make CMakeFiles/smoldyn_static.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'CMakeFiles/smoldyn_static.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 49%] Built target smoldyn_static /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn_shared.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn_shared.dir/build.make CMakeFiles/smoldyn_shared.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'CMakeFiles/smoldyn_shared.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 69%] Built target smoldyn_shared /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles/smoldyn.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f CMakeFiles/smoldyn.dir/build.make CMakeFiles/smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'CMakeFiles/smoldyn.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 71%] Built target smoldyn /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_pysmoldyn.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_pysmoldyn.dir/build.make source/python/CMakeFiles/_pysmoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/python/CMakeFiles/_pysmoldyn.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 91%] Built target _pysmoldyn /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/_smoldyn.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/_smoldyn.dir/build.make source/python/CMakeFiles/_smoldyn.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[2]: Nothing to be done for 'source/python/CMakeFiles/_smoldyn.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 97%] Built target _smoldyn /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/copy_python_tree.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/copy_python_tree.dir/build.make source/python/CMakeFiles/copy_python_tree.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 98%] Copying python source tree to binary directory cd /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python && /usr/bin/cmake -E copy_directory /builddir/build/BUILD/Smoldyn-2.67.3/source/python/smoldyn /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [ 98%] Built target copy_python_tree /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' cd /builddir/build/BUILD/Smoldyn-2.67.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/Smoldyn-2.67.3 /builddir/build/BUILD/Smoldyn-2.67.3/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python/CMakeFiles/wheel.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/make -f source/python/CMakeFiles/wheel.dir/build.make source/python/CMakeFiles/wheel.dir/build make[2]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Generating wheel in /builddir/build/BUILD/Smoldyn-2.67.3/build cd /builddir/build/BUILD/Smoldyn-2.67.3/build/py && /usr/bin/python3.12 setup.py bdist_wheel -d /builddir/build/BUILD/Smoldyn-2.67.3/build running bdist_wheel running build running build_py copying smoldyn/__init__.py -> build/lib.linux-x86_64-cpython-312/smoldyn copying smoldyn/__main__.py -> build/lib.linux-x86_64-cpython-312/smoldyn copying smoldyn/smoldyn.py -> build/lib.linux-x86_64-cpython-312/smoldyn copying smoldyn/types.py -> build/lib.linux-x86_64-cpython-312/smoldyn copying smoldyn/utils.py -> build/lib.linux-x86_64-cpython-312/smoldyn copying smoldyn/biosimulators/__init__.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/__main__.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/_version.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/combine.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/data_model.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators copying smoldyn/biosimulators/utils.py -> build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators copying smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so -> build/lib.linux-x86_64-cpython-312/smoldyn running build_ext /usr/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer, pypa/build or other standards-based tools. Follow the current Python packaging guidelines when building Python RPM packages. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details. ******************************************************************************** !! self.initialize_options() installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-312/smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-312/smoldyn/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-312/smoldyn/types.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-312/smoldyn/smoldyn.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-312/smoldyn/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn copying build/lib.linux-x86_64-cpython-312/smoldyn/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn creating build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/utils.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/data_model.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/combine.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/_version.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/__main__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators copying build/lib.linux-x86_64-cpython-312/smoldyn/biosimulators/__init__.py -> build/bdist.linux-x86_64/wheel/smoldyn/biosimulators running install_egg_info running egg_info writing smoldyn.egg-info/PKG-INFO writing dependency_links to smoldyn.egg-info/dependency_links.txt writing requirements to smoldyn.egg-info/requires.txt writing top-level names to smoldyn.egg-info/top_level.txt reading manifest file 'smoldyn.egg-info/SOURCES.txt' writing manifest file 'smoldyn.egg-info/SOURCES.txt' Copying smoldyn.egg-info to build/bdist.linux-x86_64/wheel/smoldyn-2.67.3-py3.12.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/smoldyn-2.67.3.dist-info/WHEEL creating '/builddir/build/BUILD/Smoldyn-2.67.3/build/smoldyn-2.67.3-cp312-cp312-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'smoldyn/__init__.py' adding 'smoldyn/__main__.py' adding 'smoldyn/_smoldyn.cpython-312-x86_64-linux-gnu.so' adding 'smoldyn/smoldyn.py' adding 'smoldyn/types.py' adding 'smoldyn/utils.py' adding 'smoldyn/biosimulators/__init__.py' adding 'smoldyn/biosimulators/__main__.py' adding 'smoldyn/biosimulators/_version.py' adding 'smoldyn/biosimulators/combine.py' adding 'smoldyn/biosimulators/data_model.py' adding 'smoldyn/biosimulators/utils.py' adding 'smoldyn-2.67.3.dist-info/METADATA' adding 'smoldyn-2.67.3.dist-info/WHEEL' adding 'smoldyn-2.67.3.dist-info/top_level.txt' adding 'smoldyn-2.67.3.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel make[2]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' [100%] Built target wheel make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/Smoldyn-2.67.3/build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/bin/smoldyn -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/lib64/libsmoldyn_shared.so.2.67.3 -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/lib64/libsmoldyn_shared.so.2 -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/lib64/libsmoldyn_shared.so -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/lib64/libsmoldyn_static.a -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/include/smoldyn/libsmoldyn.h -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/include/smoldyn/smoldyn.h -- Installing: /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/include/smoldyn/smoldynconfigure.h make: Leaving directory '/builddir/build/BUILD/Smoldyn-2.67.3/build' + pushd build/py ~/build/BUILD/Smoldyn-2.67.3/build/py ~/build/BUILD/Smoldyn-2.67.3 + mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/lib64/python3.12/site-packages + cp -a smoldyn smoldyn.egg-info /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/lib64/python3.12/site-packages/ + popd ~/build/BUILD/Smoldyn-2.67.3 + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 2.67.3-6.fc39 --unique-debug-suffix -2.67.3-6.fc39.x86_64 --unique-debug-src-base smoldyn-2.67.3-6.fc39.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/Smoldyn-2.67.3 find-debuginfo: starting Extracting debug info from 2 files DWARF-compressing 2 files sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/smoldyn-2.67.3-6.fc39.x86_64 3516 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/lib64/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Wrzbjk + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Smoldyn-2.67.3 + cd build + export LD_LIBRARY_PATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/lib64 + LD_LIBRARY_PATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/lib64 + export PYTHONPATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/lib64/python3.12/site-packages + PYTHONPATH=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/lib64/python3.12/site-packages + xvfb-run ctest -j1 -VV -R 'test_api|test_sanity|test_biosimulator' --output-on-failure --debug /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:424 Here: 424 /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:709 UpdateCTestConfiguration from :/builddir/build/BUILD/Smoldyn-2.67.3/build/DartConfiguration.tcl /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:436 Here: 436 /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:3036 * Read custom CTest configuration directory: /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:3041 * Check for file: /builddir/build/BUILD/Smoldyn-2.67.3/build/CTestCustom.cmake /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:3061 * Check for file: /builddir/build/BUILD/Smoldyn-2.67.3/build/CTestCustom.ctest /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:709 UpdateCTestConfiguration from :/builddir/build/BUILD/Smoldyn-2.67.3/build/DartConfiguration.tcl /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:408 Test project /builddir/build/BUILD/Smoldyn-2.67.3/build /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:1783 Constructing a list of tests /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_actions /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_api /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_biosimulators /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_concurrent_simulation /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_connect_func /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_connect_var /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_data_in_array /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_data_outputfile /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_getters /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_issue_118 /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_libsmoldyn /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_multiple_iterations /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_prd_placement /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_sanity /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2442 Add test: test_sim_from_file /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:2485 Set test directory: /builddir/build/BUILD/Smoldyn-2.67.3/build/source/python /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:1834 Done constructing a list of tests /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:984 Updating test list for fixtures /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:1207 Added 0 tests to meet fixture requirements /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:09 UTC /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:09 UTC /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestMultiProcessHandler.cxx:1414 Checking test dependency graph... /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestMultiProcessHandler.cxx:1443 Checking test dependency graph end /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestMultiProcessHandler.cxx:168 test 2 /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:526 Start 2: test_api /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:687 2: Test command: /usr/bin/python3.12 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_api.py" /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:695 2: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:703 2: Environment variables: /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:708 2: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:708 2: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:09 UTC /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:804 2: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:983 1/3 Test #2: test_api ......................... /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:986 Testing test_api ... /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:256 Passed 0.25 sec /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:09 UTC /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestMultiProcessHandler.cxx:168 test 3 /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:526 Start 3: test_biosimulators /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:687 3: Test command: /usr/bin/python3.12 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_biosimulators.py" /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:695 3: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:703 3: Environment variables: /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:708 3: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:708 3: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:09 UTC /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:804 3: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 3: ssssssssssssssssssssssss /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 3: ---------------------------------------------------------------------- /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 3: Ran 24 tests in 0.000s /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 3: /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 3: OK (skipped=24) /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:983 2/3 Test #3: test_biosimulators ............... /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:986 Testing test_biosimulators ... /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:256 Passed 0.27 sec /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:09 UTC /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestMultiProcessHandler.cxx:168 test 14 /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:526 Start 14: test_sanity /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:687 14: Test command: /usr/bin/python3.12 "/builddir/build/BUILD/Smoldyn-2.67.3/tests/test_sanity.py" /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:695 14: Working Directory: /builddir/build/BUILD/Smoldyn-2.67.3/tests /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:703 14: Environment variables: /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:708 14: PYTHONPATH=/builddir/build/BUILD/Smoldyn-2.67.3/build/py /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:708 14: SMOLDYN_NO_PROMPT=1 /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:09 UTC /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:804 14: Test timeout computed to be: 10000000 /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 14: Using smoldyn from /builddir/build/BUILD/Smoldyn-2.67.3/build/py/smoldyn/__init__.py /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 14: test_newcursim /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 14: /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 14: Testing test_get_err /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:39 14: (, '') /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:983 3/3 Test #14: test_sanity ...................... /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:986 Testing test_sanity ... /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestRunTest.cxx:256 Passed 0.23 sec /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:09 UTC /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:09 UTC /builddir/build/BUILD/cmake-3.27.0/Source/cmCTest.cxx:309 Current_Time: Jul 22 02:09 UTC /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:447 The following tests passed: /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:452 test_api /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:452 test_biosimulators /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:452 test_sanity /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:613 100% tests passed, 0 tests failed out of 3 /builddir/build/BUILD/cmake-3.27.0/Source/CTest/cmCTestTestHandler.cxx:629 Total Test time (real) = 0.76 sec + RPM_EC=0 ++ jobs -p + exit 0 Processing files: smoldyn-2.67.3-6.fc39.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.CgKuua + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + DOCDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/Using-Smoldyn-with-SED-ML-COMBINE-BioSimulators.md /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/README.md /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn + RPM_EC=0 ++ jobs -p + exit 0 Provides: bundled(SFMT) = 1.3.3 smoldyn = 2.67.3-6.fc39 smoldyn(x86-64) = 2.67.3-6.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libsmoldyn_shared.so.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) rtld(GNU_HASH) Processing files: smoldyn-doc-2.67.3-6.fc39.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.FTl08y + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + DOCDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/BioNetGen /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/CMakeLists.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/Doxyfile.in /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/README.md /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/SmolCrowd /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/SmolEmulate /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/Smoldyn /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/_static /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/build_doxygen /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/conf.py /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/doxygen /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/examples /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/index.rst /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/libSteve /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/python /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/requirements.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/tikz /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/user /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/docs/wrl2smol /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/doc/smoldyn-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: smoldyn-doc = 2.67.3-6.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: smoldyn-libs-2.67.3-6.fc39.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.LtYfTu + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + LICENSEDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/licenses/smoldyn-libs + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/licenses/smoldyn-libs + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/License.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/licenses/smoldyn-libs + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/licenses/smoldyn-libs + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/LICENSE /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/licenses/smoldyn-libs + RPM_EC=0 ++ jobs -p + exit 0 Provides: libsmoldyn_shared.so.2()(64bit) smoldyn-libs = 2.67.3-6.fc39 smoldyn-libs(x86-64) = 2.67.3-6.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: glibc >= 2.37.9000-17 libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) rtld(GNU_HASH) Processing files: smoldyn-libs-devel-2.67.3-6.fc39.x86_64 Provides: smoldyn-libs-devel = 2.67.3-6.fc39 smoldyn-libs-devel(x86-64) = 2.67.3-6.fc39 smoldyn-libs-static = 0:2.67.3-6.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libsmoldyn_shared.so.2()(64bit) Processing files: python3-smoldyn-2.67.3-6.fc39.x86_64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.jVkeAx + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + LICENSEDIR=/builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/licenses/python3-smoldyn + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/licenses/python3-smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/License.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/licenses/python3-smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/source/libSteve/SFMT/SFMT-LICENSE.txt /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/licenses/python3-smoldyn + cp -pr /builddir/build/BUILD/Smoldyn-2.67.3/LICENSE /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64/usr/share/licenses/python3-smoldyn + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-smoldyn = 2.67.3-6.fc39 python3-smoldyn = 2.67.3-6.fc39 python3-smoldyn(x86-64) = 2.67.3-6.fc39 python3.12-smoldyn = 2.67.3-6.fc39 python3.12dist(smoldyn) = 2.67.3 python3dist(smoldyn) = 2.67.3 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: glibc >= 2.37.9000-17 libGL.so.1()(64bit) libGLU.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libglut.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.13)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libtiff.so.5()(64bit) libtiff.so.5(LIBTIFF_4.0)(64bit) python(abi) = 3.12 rtld(GNU_HASH) Obsoletes: python-smoldyn < 2.67.3-6.fc39 Processing files: smoldyn-debugsource-2.67.3-6.fc39.x86_64 Provides: smoldyn-debugsource = 2.67.3-6.fc39 smoldyn-debugsource(x86-64) = 2.67.3-6.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: smoldyn-debuginfo-2.67.3-6.fc39.x86_64 Provides: debuginfo(build-id) = a20d07e1cd01609907483e99c976fa37893fe91d smoldyn-debuginfo = 2.67.3-6.fc39 smoldyn-debuginfo(x86-64) = 2.67.3-6.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: smoldyn-debugsource(x86-64) = 2.67.3-6.fc39 Processing files: smoldyn-libs-debuginfo-2.67.3-6.fc39.x86_64 Provides: debuginfo(build-id) = d698915c964bb271f05d47003a4386c6fede0351 libsmoldyn_shared.so.2.67.3-2.67.3-6.fc39.x86_64.debug()(64bit) smoldyn-libs-debuginfo = 2.67.3-6.fc39 smoldyn-libs-debuginfo(x86-64) = 2.67.3-6.fc39 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: smoldyn-debugsource(x86-64) = 2.67.3-6.fc39 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64 Wrote: /builddir/build/RPMS/smoldyn-libs-debuginfo-2.67.3-6.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/python3-smoldyn-2.67.3-6.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-libs-devel-2.67.3-6.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-debugsource-2.67.3-6.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-libs-2.67.3-6.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-debuginfo-2.67.3-6.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-2.67.3-6.fc39.x86_64.rpm Wrote: /builddir/build/RPMS/smoldyn-doc-2.67.3-6.fc39.noarch.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.mVAqTz + umask 022 + cd /builddir/build/BUILD + cd Smoldyn-2.67.3 + /usr/bin/rm -rf /builddir/build/BUILDROOT/smoldyn-2.67.3-6.fc39.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.8cOCwD + umask 022 + cd /builddir/build/BUILD + rm -rf Smoldyn-2.67.3 Smoldyn-2.67.3.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: %patchN is deprecated (6 usages found), use %patch N (or %patch -P N) Finish: rpmbuild smoldyn-2.67.3-6.fc39.src.rpm Finish: build phase for smoldyn-2.67.3-6.fc39.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1689991478.342716/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1689991478.342716/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1689991478.342716/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/smoldyn-2.67.3-6.fc39.src.rpm) Config(child) 2 minutes 44 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool